Multiple sequence alignment - TraesCS1B01G299000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G299000 chr1B 100.000 3524 0 0 1 3524 520363626 520360103 0.000000e+00 6508
1 TraesCS1B01G299000 chr1B 87.270 597 51 15 129 713 10486456 10485873 0.000000e+00 658
2 TraesCS1B01G299000 chr1A 93.119 1744 94 15 906 2632 486697478 486695744 0.000000e+00 2532
3 TraesCS1B01G299000 chr1A 86.825 463 50 8 1581 2034 557135360 557134900 1.130000e-139 507
4 TraesCS1B01G299000 chr7D 95.617 867 34 4 2661 3524 205947707 205948572 0.000000e+00 1387
5 TraesCS1B01G299000 chr7D 95.298 872 35 5 2658 3524 575713860 575714730 0.000000e+00 1378
6 TraesCS1B01G299000 chr7D 94.718 852 37 6 2660 3503 31173613 31172762 0.000000e+00 1317
7 TraesCS1B01G299000 chr7D 94.607 853 41 3 2676 3524 580895959 580896810 0.000000e+00 1315
8 TraesCS1B01G299000 chr7D 79.249 1171 168 30 1361 2517 59703837 59704946 0.000000e+00 747
9 TraesCS1B01G299000 chr2D 94.616 873 42 3 2657 3524 66155885 66155013 0.000000e+00 1347
10 TraesCS1B01G299000 chr1D 93.548 899 57 1 1517 2414 386937031 386936133 0.000000e+00 1338
11 TraesCS1B01G299000 chr1D 83.057 785 101 15 1116 1888 464858435 464857671 0.000000e+00 684
12 TraesCS1B01G299000 chr1D 86.526 616 63 8 1910 2519 464857683 464857082 0.000000e+00 660
13 TraesCS1B01G299000 chr1D 85.554 623 63 14 133 738 402836738 402836126 8.300000e-176 627
14 TraesCS1B01G299000 chr1D 90.150 467 30 11 1064 1521 386937565 386937106 8.420000e-166 593
15 TraesCS1B01G299000 chr1D 95.722 187 8 0 2446 2632 386904625 386904439 5.720000e-78 302
16 TraesCS1B01G299000 chr1D 92.742 124 9 0 959 1082 386939798 386939675 2.790000e-41 180
17 TraesCS1B01G299000 chr2A 94.064 876 46 5 2654 3524 17030796 17029922 0.000000e+00 1325
18 TraesCS1B01G299000 chr2A 99.123 114 1 0 1 114 729979423 729979536 4.610000e-49 206
19 TraesCS1B01G299000 chr3B 94.145 871 48 3 2656 3524 688150602 688151471 0.000000e+00 1323
20 TraesCS1B01G299000 chr3A 94.425 861 42 4 2666 3524 13349335 13348479 0.000000e+00 1319
21 TraesCS1B01G299000 chr5D 93.636 880 39 13 2658 3524 372335138 372334263 0.000000e+00 1299
22 TraesCS1B01G299000 chr5D 79.386 1140 188 32 1384 2518 520301829 520300732 0.000000e+00 760
23 TraesCS1B01G299000 chr5D 87.923 621 54 7 136 735 477032797 477033417 0.000000e+00 712
24 TraesCS1B01G299000 chr5D 79.715 631 73 32 135 738 402975233 402974631 4.240000e-109 405
25 TraesCS1B01G299000 chr5D 81.667 360 54 8 2166 2518 520342660 520342306 4.450000e-74 289
26 TraesCS1B01G299000 chr6A 81.368 1170 174 22 1361 2517 22171946 22173084 0.000000e+00 913
27 TraesCS1B01G299000 chr6A 80.511 1175 181 24 1366 2528 22193323 22192185 0.000000e+00 857
28 TraesCS1B01G299000 chr6A 79.694 1177 190 31 1366 2528 22200837 22199696 0.000000e+00 804
29 TraesCS1B01G299000 chr6A 81.107 741 116 14 1783 2514 98187421 98186696 3.950000e-159 571
30 TraesCS1B01G299000 chr6A 80.255 471 87 6 2051 2518 22351399 22350932 2.010000e-92 350
31 TraesCS1B01G299000 chr6B 80.467 1157 178 25 1366 2513 38625613 38624496 0.000000e+00 841
32 TraesCS1B01G299000 chr6B 80.119 1177 192 24 1366 2525 46654104 46655255 0.000000e+00 839
33 TraesCS1B01G299000 chr6B 79.797 1183 177 27 1366 2525 37035614 37036757 0.000000e+00 804
34 TraesCS1B01G299000 chr6B 86.010 629 66 8 131 738 57124044 57123417 0.000000e+00 654
35 TraesCS1B01G299000 chr6B 78.475 892 155 22 1651 2528 38565225 38564357 1.850000e-152 549
36 TraesCS1B01G299000 chr6B 80.352 738 124 15 1783 2514 156404724 156404002 1.110000e-149 540
37 TraesCS1B01G299000 chr6D 79.898 1179 188 26 1366 2531 23632011 23630869 0.000000e+00 819
38 TraesCS1B01G299000 chr6D 79.779 1177 189 32 1366 2528 23642055 23640914 0.000000e+00 809
39 TraesCS1B01G299000 chr6D 81.649 1019 146 20 1373 2381 22762609 22761622 0.000000e+00 808
40 TraesCS1B01G299000 chr6D 85.942 626 53 18 133 735 17388103 17388716 1.380000e-178 636
41 TraesCS1B01G299000 chr6D 79.424 938 152 22 1580 2513 23748579 23747679 2.990000e-175 625
42 TraesCS1B01G299000 chr6D 81.326 739 115 15 1783 2514 81738563 81737841 2.360000e-161 579
43 TraesCS1B01G299000 chr6D 98.276 116 2 0 1 116 463557376 463557491 1.660000e-48 204
44 TraesCS1B01G299000 chr6D 78.261 207 34 7 2321 2517 23415122 23415327 4.780000e-24 122
45 TraesCS1B01G299000 chr7B 88.455 615 55 9 136 738 113914679 113914069 0.000000e+00 728
46 TraesCS1B01G299000 chr5B 87.419 620 54 10 137 735 703842624 703843240 0.000000e+00 691
47 TraesCS1B01G299000 chr5B 79.530 1021 167 26 1368 2385 655279013 655279994 0.000000e+00 689
48 TraesCS1B01G299000 chr5B 84.579 629 69 14 135 738 609270868 609270243 1.810000e-167 599
49 TraesCS1B01G299000 chr5A 79.314 1020 167 25 1368 2385 648361538 648360561 0.000000e+00 675
50 TraesCS1B01G299000 chr5A 97.368 114 3 0 1 114 582629280 582629167 9.980000e-46 195
51 TraesCS1B01G299000 chr5A 96.522 115 4 0 1 115 37841022 37841136 1.290000e-44 191
52 TraesCS1B01G299000 chr3D 86.124 627 65 13 133 738 474520248 474519623 0.000000e+00 656
53 TraesCS1B01G299000 chrUn 77.378 1167 211 28 1366 2518 294624788 294623661 0.000000e+00 643
54 TraesCS1B01G299000 chr4D 82.035 629 75 17 137 738 461224134 461223517 5.250000e-138 501
55 TraesCS1B01G299000 chr2B 99.123 114 1 0 1 114 690892767 690892654 4.610000e-49 206
56 TraesCS1B01G299000 chr2B 99.123 114 1 0 1 114 769901408 769901295 4.610000e-49 206
57 TraesCS1B01G299000 chr7A 72.173 672 124 27 1862 2524 677704094 677703477 2.830000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G299000 chr1B 520360103 520363626 3523 True 6508.000000 6508 100.000000 1 3524 1 chr1B.!!$R2 3523
1 TraesCS1B01G299000 chr1B 10485873 10486456 583 True 658.000000 658 87.270000 129 713 1 chr1B.!!$R1 584
2 TraesCS1B01G299000 chr1A 486695744 486697478 1734 True 2532.000000 2532 93.119000 906 2632 1 chr1A.!!$R1 1726
3 TraesCS1B01G299000 chr7D 205947707 205948572 865 False 1387.000000 1387 95.617000 2661 3524 1 chr7D.!!$F2 863
4 TraesCS1B01G299000 chr7D 575713860 575714730 870 False 1378.000000 1378 95.298000 2658 3524 1 chr7D.!!$F3 866
5 TraesCS1B01G299000 chr7D 31172762 31173613 851 True 1317.000000 1317 94.718000 2660 3503 1 chr7D.!!$R1 843
6 TraesCS1B01G299000 chr7D 580895959 580896810 851 False 1315.000000 1315 94.607000 2676 3524 1 chr7D.!!$F4 848
7 TraesCS1B01G299000 chr7D 59703837 59704946 1109 False 747.000000 747 79.249000 1361 2517 1 chr7D.!!$F1 1156
8 TraesCS1B01G299000 chr2D 66155013 66155885 872 True 1347.000000 1347 94.616000 2657 3524 1 chr2D.!!$R1 867
9 TraesCS1B01G299000 chr1D 386936133 386939798 3665 True 703.666667 1338 92.146667 959 2414 3 chr1D.!!$R3 1455
10 TraesCS1B01G299000 chr1D 464857082 464858435 1353 True 672.000000 684 84.791500 1116 2519 2 chr1D.!!$R4 1403
11 TraesCS1B01G299000 chr1D 402836126 402836738 612 True 627.000000 627 85.554000 133 738 1 chr1D.!!$R2 605
12 TraesCS1B01G299000 chr2A 17029922 17030796 874 True 1325.000000 1325 94.064000 2654 3524 1 chr2A.!!$R1 870
13 TraesCS1B01G299000 chr3B 688150602 688151471 869 False 1323.000000 1323 94.145000 2656 3524 1 chr3B.!!$F1 868
14 TraesCS1B01G299000 chr3A 13348479 13349335 856 True 1319.000000 1319 94.425000 2666 3524 1 chr3A.!!$R1 858
15 TraesCS1B01G299000 chr5D 372334263 372335138 875 True 1299.000000 1299 93.636000 2658 3524 1 chr5D.!!$R1 866
16 TraesCS1B01G299000 chr5D 520300732 520301829 1097 True 760.000000 760 79.386000 1384 2518 1 chr5D.!!$R3 1134
17 TraesCS1B01G299000 chr5D 477032797 477033417 620 False 712.000000 712 87.923000 136 735 1 chr5D.!!$F1 599
18 TraesCS1B01G299000 chr5D 402974631 402975233 602 True 405.000000 405 79.715000 135 738 1 chr5D.!!$R2 603
19 TraesCS1B01G299000 chr6A 22171946 22173084 1138 False 913.000000 913 81.368000 1361 2517 1 chr6A.!!$F1 1156
20 TraesCS1B01G299000 chr6A 22192185 22193323 1138 True 857.000000 857 80.511000 1366 2528 1 chr6A.!!$R1 1162
21 TraesCS1B01G299000 chr6A 22199696 22200837 1141 True 804.000000 804 79.694000 1366 2528 1 chr6A.!!$R2 1162
22 TraesCS1B01G299000 chr6A 98186696 98187421 725 True 571.000000 571 81.107000 1783 2514 1 chr6A.!!$R4 731
23 TraesCS1B01G299000 chr6B 38624496 38625613 1117 True 841.000000 841 80.467000 1366 2513 1 chr6B.!!$R2 1147
24 TraesCS1B01G299000 chr6B 46654104 46655255 1151 False 839.000000 839 80.119000 1366 2525 1 chr6B.!!$F2 1159
25 TraesCS1B01G299000 chr6B 37035614 37036757 1143 False 804.000000 804 79.797000 1366 2525 1 chr6B.!!$F1 1159
26 TraesCS1B01G299000 chr6B 57123417 57124044 627 True 654.000000 654 86.010000 131 738 1 chr6B.!!$R3 607
27 TraesCS1B01G299000 chr6B 38564357 38565225 868 True 549.000000 549 78.475000 1651 2528 1 chr6B.!!$R1 877
28 TraesCS1B01G299000 chr6B 156404002 156404724 722 True 540.000000 540 80.352000 1783 2514 1 chr6B.!!$R4 731
29 TraesCS1B01G299000 chr6D 23630869 23632011 1142 True 819.000000 819 79.898000 1366 2531 1 chr6D.!!$R2 1165
30 TraesCS1B01G299000 chr6D 23640914 23642055 1141 True 809.000000 809 79.779000 1366 2528 1 chr6D.!!$R3 1162
31 TraesCS1B01G299000 chr6D 22761622 22762609 987 True 808.000000 808 81.649000 1373 2381 1 chr6D.!!$R1 1008
32 TraesCS1B01G299000 chr6D 17388103 17388716 613 False 636.000000 636 85.942000 133 735 1 chr6D.!!$F1 602
33 TraesCS1B01G299000 chr6D 23747679 23748579 900 True 625.000000 625 79.424000 1580 2513 1 chr6D.!!$R4 933
34 TraesCS1B01G299000 chr6D 81737841 81738563 722 True 579.000000 579 81.326000 1783 2514 1 chr6D.!!$R5 731
35 TraesCS1B01G299000 chr7B 113914069 113914679 610 True 728.000000 728 88.455000 136 738 1 chr7B.!!$R1 602
36 TraesCS1B01G299000 chr5B 703842624 703843240 616 False 691.000000 691 87.419000 137 735 1 chr5B.!!$F2 598
37 TraesCS1B01G299000 chr5B 655279013 655279994 981 False 689.000000 689 79.530000 1368 2385 1 chr5B.!!$F1 1017
38 TraesCS1B01G299000 chr5B 609270243 609270868 625 True 599.000000 599 84.579000 135 738 1 chr5B.!!$R1 603
39 TraesCS1B01G299000 chr5A 648360561 648361538 977 True 675.000000 675 79.314000 1368 2385 1 chr5A.!!$R2 1017
40 TraesCS1B01G299000 chr3D 474519623 474520248 625 True 656.000000 656 86.124000 133 738 1 chr3D.!!$R1 605
41 TraesCS1B01G299000 chrUn 294623661 294624788 1127 True 643.000000 643 77.378000 1366 2518 1 chrUn.!!$R1 1152
42 TraesCS1B01G299000 chr4D 461223517 461224134 617 True 501.000000 501 82.035000 137 738 1 chr4D.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.026803 GCTCGATTTCATGGTCGTGC 59.973 55.0 19.17 19.17 45.70 5.34 F
111 112 0.032130 TGTCGTCTGTGGAGCAGTTC 59.968 55.0 0.00 0.00 45.23 3.01 F
876 938 0.035247 AATTTACGGCGGGGCACTTA 60.035 50.0 13.24 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 3996 0.178301 GGTCCGAGGAGAAATCCACC 59.822 60.000 0.0 0.0 0.0 4.61 R
2058 4376 1.414550 GGGAGGAGGAGAAGCATGTAC 59.585 57.143 0.0 0.0 0.0 2.90 R
2636 4981 0.034476 TCCAGATGCGATCCAGATGC 59.966 55.000 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.238903 CATGCACGACGATGTAAATCC 57.761 47.619 0.00 0.00 0.00 3.01
21 22 2.371910 TGCACGACGATGTAAATCCA 57.628 45.000 0.00 0.00 0.00 3.41
22 23 2.267426 TGCACGACGATGTAAATCCAG 58.733 47.619 0.00 0.00 0.00 3.86
23 24 1.004927 GCACGACGATGTAAATCCAGC 60.005 52.381 0.00 0.00 0.00 4.85
24 25 1.593006 CACGACGATGTAAATCCAGCC 59.407 52.381 0.00 0.00 0.00 4.85
25 26 1.206132 ACGACGATGTAAATCCAGCCA 59.794 47.619 0.00 0.00 0.00 4.75
26 27 1.593006 CGACGATGTAAATCCAGCCAC 59.407 52.381 0.00 0.00 0.00 5.01
27 28 2.627945 GACGATGTAAATCCAGCCACA 58.372 47.619 0.00 0.00 0.00 4.17
28 29 2.351726 GACGATGTAAATCCAGCCACAC 59.648 50.000 0.00 0.00 0.00 3.82
29 30 2.290008 ACGATGTAAATCCAGCCACACA 60.290 45.455 0.00 0.00 0.00 3.72
30 31 2.945008 CGATGTAAATCCAGCCACACAT 59.055 45.455 0.00 0.00 0.00 3.21
31 32 3.242837 CGATGTAAATCCAGCCACACATG 60.243 47.826 0.00 0.00 0.00 3.21
32 33 3.153369 TGTAAATCCAGCCACACATGT 57.847 42.857 0.00 0.00 0.00 3.21
33 34 4.293662 TGTAAATCCAGCCACACATGTA 57.706 40.909 0.00 0.00 0.00 2.29
34 35 4.260985 TGTAAATCCAGCCACACATGTAG 58.739 43.478 0.00 0.00 0.00 2.74
35 36 3.439857 AAATCCAGCCACACATGTAGT 57.560 42.857 0.00 0.00 0.00 2.73
36 37 2.698855 ATCCAGCCACACATGTAGTC 57.301 50.000 0.00 0.00 0.00 2.59
37 38 0.246360 TCCAGCCACACATGTAGTCG 59.754 55.000 0.00 0.00 0.00 4.18
38 39 0.246360 CCAGCCACACATGTAGTCGA 59.754 55.000 0.00 0.00 0.00 4.20
39 40 1.350193 CAGCCACACATGTAGTCGAC 58.650 55.000 7.70 7.70 0.00 4.20
40 41 1.067565 CAGCCACACATGTAGTCGACT 60.068 52.381 23.66 23.66 0.00 4.18
41 42 1.618837 AGCCACACATGTAGTCGACTT 59.381 47.619 25.44 2.19 0.00 3.01
42 43 2.823747 AGCCACACATGTAGTCGACTTA 59.176 45.455 25.44 13.92 0.00 2.24
43 44 3.257375 AGCCACACATGTAGTCGACTTAA 59.743 43.478 25.44 12.88 0.00 1.85
44 45 3.991773 GCCACACATGTAGTCGACTTAAA 59.008 43.478 25.44 10.17 0.00 1.52
45 46 4.091509 GCCACACATGTAGTCGACTTAAAG 59.908 45.833 25.44 14.04 0.00 1.85
46 47 4.625742 CCACACATGTAGTCGACTTAAAGG 59.374 45.833 25.44 13.49 0.00 3.11
47 48 4.625742 CACACATGTAGTCGACTTAAAGGG 59.374 45.833 25.44 15.06 0.00 3.95
48 49 3.617263 CACATGTAGTCGACTTAAAGGGC 59.383 47.826 25.44 6.32 0.00 5.19
49 50 3.259876 ACATGTAGTCGACTTAAAGGGCA 59.740 43.478 25.44 11.46 0.00 5.36
50 51 4.250464 CATGTAGTCGACTTAAAGGGCAA 58.750 43.478 25.44 0.00 0.00 4.52
51 52 3.656559 TGTAGTCGACTTAAAGGGCAAC 58.343 45.455 25.44 12.67 0.00 4.17
52 53 2.922740 AGTCGACTTAAAGGGCAACA 57.077 45.000 13.58 0.00 39.74 3.33
53 54 2.767505 AGTCGACTTAAAGGGCAACAG 58.232 47.619 13.58 0.00 39.74 3.16
54 55 1.197036 GTCGACTTAAAGGGCAACAGC 59.803 52.381 8.70 0.00 39.74 4.40
63 64 3.127533 GGCAACAGCCGCTCGATT 61.128 61.111 0.00 0.00 38.93 3.34
64 65 2.690778 GGCAACAGCCGCTCGATTT 61.691 57.895 0.00 0.00 38.93 2.17
65 66 1.226128 GCAACAGCCGCTCGATTTC 60.226 57.895 0.00 0.00 0.00 2.17
66 67 1.911293 GCAACAGCCGCTCGATTTCA 61.911 55.000 0.00 0.00 0.00 2.69
67 68 0.729116 CAACAGCCGCTCGATTTCAT 59.271 50.000 0.00 0.00 0.00 2.57
68 69 0.729116 AACAGCCGCTCGATTTCATG 59.271 50.000 0.00 0.00 0.00 3.07
69 70 1.091771 ACAGCCGCTCGATTTCATGG 61.092 55.000 0.00 0.00 0.00 3.66
70 71 1.091771 CAGCCGCTCGATTTCATGGT 61.092 55.000 0.00 0.00 0.00 3.55
71 72 0.811616 AGCCGCTCGATTTCATGGTC 60.812 55.000 0.00 0.00 0.00 4.02
72 73 1.927210 CCGCTCGATTTCATGGTCG 59.073 57.895 8.97 8.97 39.11 4.79
73 74 0.806102 CCGCTCGATTTCATGGTCGT 60.806 55.000 13.14 0.00 38.85 4.34
74 75 0.298707 CGCTCGATTTCATGGTCGTG 59.701 55.000 13.14 12.13 38.85 4.35
75 76 0.026803 GCTCGATTTCATGGTCGTGC 59.973 55.000 19.17 19.17 45.70 5.34
76 77 0.298707 CTCGATTTCATGGTCGTGCG 59.701 55.000 13.14 0.00 38.85 5.34
77 78 0.109039 TCGATTTCATGGTCGTGCGA 60.109 50.000 13.14 0.00 38.85 5.10
78 79 0.718904 CGATTTCATGGTCGTGCGAA 59.281 50.000 0.00 0.00 33.42 4.70
79 80 1.127766 CGATTTCATGGTCGTGCGAAA 59.872 47.619 0.00 0.00 33.42 3.46
80 81 2.412195 CGATTTCATGGTCGTGCGAAAA 60.412 45.455 0.00 0.00 31.64 2.29
81 82 3.727673 CGATTTCATGGTCGTGCGAAAAT 60.728 43.478 0.00 0.00 31.64 1.82
82 83 2.892373 TTCATGGTCGTGCGAAAATC 57.108 45.000 0.00 0.00 0.00 2.17
83 84 0.718904 TCATGGTCGTGCGAAAATCG 59.281 50.000 0.00 0.00 43.89 3.34
84 85 0.247655 CATGGTCGTGCGAAAATCGG 60.248 55.000 1.64 0.00 40.84 4.18
85 86 0.672401 ATGGTCGTGCGAAAATCGGT 60.672 50.000 1.64 0.00 40.84 4.69
86 87 0.881159 TGGTCGTGCGAAAATCGGTT 60.881 50.000 1.64 0.00 40.84 4.44
87 88 0.452122 GGTCGTGCGAAAATCGGTTG 60.452 55.000 1.64 0.00 40.84 3.77
88 89 1.058057 GTCGTGCGAAAATCGGTTGC 61.058 55.000 1.64 0.00 40.84 4.17
89 90 1.082431 CGTGCGAAAATCGGTTGCA 60.082 52.632 1.64 0.00 40.84 4.08
90 91 4.933483 TGCGAAAATCGGTTGCAC 57.067 50.000 1.64 0.00 40.84 4.57
91 92 2.025719 TGCGAAAATCGGTTGCACA 58.974 47.368 1.64 0.00 40.84 4.57
92 93 0.595588 TGCGAAAATCGGTTGCACAT 59.404 45.000 1.64 0.00 40.84 3.21
93 94 0.984109 GCGAAAATCGGTTGCACATG 59.016 50.000 1.64 0.00 40.84 3.21
94 95 1.665735 GCGAAAATCGGTTGCACATGT 60.666 47.619 0.00 0.00 40.84 3.21
95 96 2.241722 CGAAAATCGGTTGCACATGTC 58.758 47.619 0.00 0.00 36.00 3.06
96 97 2.241722 GAAAATCGGTTGCACATGTCG 58.758 47.619 0.00 0.00 0.00 4.35
97 98 1.234821 AAATCGGTTGCACATGTCGT 58.765 45.000 0.00 0.00 0.00 4.34
98 99 0.796312 AATCGGTTGCACATGTCGTC 59.204 50.000 0.00 0.00 0.00 4.20
99 100 0.037326 ATCGGTTGCACATGTCGTCT 60.037 50.000 0.00 0.00 0.00 4.18
100 101 0.943835 TCGGTTGCACATGTCGTCTG 60.944 55.000 0.00 0.00 0.00 3.51
101 102 1.221466 CGGTTGCACATGTCGTCTGT 61.221 55.000 0.00 0.00 0.00 3.41
102 103 0.235665 GGTTGCACATGTCGTCTGTG 59.764 55.000 0.00 9.39 45.39 3.66
103 104 0.235665 GTTGCACATGTCGTCTGTGG 59.764 55.000 0.00 0.00 43.34 4.17
104 105 0.105778 TTGCACATGTCGTCTGTGGA 59.894 50.000 0.00 9.72 43.34 4.02
105 106 0.319813 TGCACATGTCGTCTGTGGAG 60.320 55.000 0.00 0.00 43.34 3.86
106 107 1.630244 GCACATGTCGTCTGTGGAGC 61.630 60.000 0.00 0.00 43.34 4.70
107 108 0.319813 CACATGTCGTCTGTGGAGCA 60.320 55.000 0.00 0.00 40.23 4.26
108 109 0.037882 ACATGTCGTCTGTGGAGCAG 60.038 55.000 0.00 0.00 46.34 4.24
109 110 0.037882 CATGTCGTCTGTGGAGCAGT 60.038 55.000 0.00 0.00 45.23 4.40
110 111 0.681733 ATGTCGTCTGTGGAGCAGTT 59.318 50.000 0.00 0.00 45.23 3.16
111 112 0.032130 TGTCGTCTGTGGAGCAGTTC 59.968 55.000 0.00 0.00 45.23 3.01
112 113 0.667792 GTCGTCTGTGGAGCAGTTCC 60.668 60.000 0.00 0.00 45.23 3.62
121 122 1.291132 GGAGCAGTTCCGATGTTAGC 58.709 55.000 0.00 0.00 35.91 3.09
122 123 1.291132 GAGCAGTTCCGATGTTAGCC 58.709 55.000 0.00 0.00 0.00 3.93
123 124 0.613260 AGCAGTTCCGATGTTAGCCA 59.387 50.000 0.00 0.00 0.00 4.75
124 125 1.009829 GCAGTTCCGATGTTAGCCAG 58.990 55.000 0.00 0.00 0.00 4.85
125 126 1.009829 CAGTTCCGATGTTAGCCAGC 58.990 55.000 0.00 0.00 0.00 4.85
126 127 0.613260 AGTTCCGATGTTAGCCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
127 128 1.003118 AGTTCCGATGTTAGCCAGCAA 59.997 47.619 0.00 0.00 0.00 3.91
128 129 1.130561 GTTCCGATGTTAGCCAGCAAC 59.869 52.381 0.00 0.00 0.00 4.17
129 130 0.613260 TCCGATGTTAGCCAGCAACT 59.387 50.000 0.00 0.00 0.00 3.16
130 131 1.003118 TCCGATGTTAGCCAGCAACTT 59.997 47.619 0.00 0.00 0.00 2.66
131 132 1.812571 CCGATGTTAGCCAGCAACTTT 59.187 47.619 0.00 0.00 0.00 2.66
187 190 2.602217 CGCTAAAAAGACGTTTGCAGCT 60.602 45.455 14.39 0.00 36.56 4.24
215 218 2.127758 CTGTTTTGACGCGGCGAC 60.128 61.111 30.94 23.79 0.00 5.19
249 252 3.046390 CAACGACCGCTGCAAATTTTAA 58.954 40.909 0.00 0.00 0.00 1.52
381 397 6.272318 ACACATGGCATAATTTAAATCACCG 58.728 36.000 0.00 0.00 0.00 4.94
426 445 6.710278 AGTGCATGCCCATAAGTTTAAATTT 58.290 32.000 16.68 1.35 0.00 1.82
485 508 6.983307 CCAAACCAATCATGACACAAAAGTTA 59.017 34.615 0.00 0.00 0.00 2.24
488 511 6.205784 ACCAATCATGACACAAAAGTTAACG 58.794 36.000 0.00 0.00 0.00 3.18
543 568 2.229302 CCTCGTCTTCGTCTTCCTCTTT 59.771 50.000 0.00 0.00 38.33 2.52
647 696 2.416747 TGGCAAGATCTTCAACGACAG 58.583 47.619 4.57 0.00 0.00 3.51
725 787 2.086869 CTCCCATGAGACACGCAAAAT 58.913 47.619 0.00 0.00 41.42 1.82
738 800 2.163010 ACGCAAAATTCATGCCTCTCAG 59.837 45.455 9.77 0.00 40.72 3.35
739 801 2.421073 CGCAAAATTCATGCCTCTCAGA 59.579 45.455 9.77 0.00 40.72 3.27
740 802 3.487042 CGCAAAATTCATGCCTCTCAGAG 60.487 47.826 9.77 0.00 40.72 3.35
741 803 3.442977 GCAAAATTCATGCCTCTCAGAGT 59.557 43.478 0.00 0.00 37.85 3.24
742 804 4.674623 GCAAAATTCATGCCTCTCAGAGTG 60.675 45.833 0.00 0.00 37.85 3.51
743 805 2.328819 ATTCATGCCTCTCAGAGTGC 57.671 50.000 0.00 4.60 0.00 4.40
744 806 0.108472 TTCATGCCTCTCAGAGTGCG 60.108 55.000 0.00 0.00 31.72 5.34
745 807 1.521010 CATGCCTCTCAGAGTGCGG 60.521 63.158 0.00 0.00 31.72 5.69
746 808 3.382803 ATGCCTCTCAGAGTGCGGC 62.383 63.158 16.43 16.43 41.06 6.53
748 810 3.753434 CCTCTCAGAGTGCGGCGT 61.753 66.667 9.37 0.00 0.00 5.68
749 811 2.505777 CTCTCAGAGTGCGGCGTG 60.506 66.667 9.37 0.00 0.00 5.34
750 812 4.724602 TCTCAGAGTGCGGCGTGC 62.725 66.667 9.37 1.18 46.70 5.34
768 830 2.909965 GGAAGCGGGCACACCAAA 60.910 61.111 0.00 0.00 40.22 3.28
769 831 2.275380 GGAAGCGGGCACACCAAAT 61.275 57.895 0.00 0.00 40.22 2.32
770 832 0.963355 GGAAGCGGGCACACCAAATA 60.963 55.000 0.00 0.00 40.22 1.40
771 833 0.885196 GAAGCGGGCACACCAAATAA 59.115 50.000 0.00 0.00 40.22 1.40
772 834 1.271102 GAAGCGGGCACACCAAATAAA 59.729 47.619 0.00 0.00 40.22 1.40
773 835 0.601057 AGCGGGCACACCAAATAAAC 59.399 50.000 0.00 0.00 40.22 2.01
774 836 0.315568 GCGGGCACACCAAATAAACA 59.684 50.000 0.00 0.00 40.22 2.83
775 837 1.668628 GCGGGCACACCAAATAAACAG 60.669 52.381 0.00 0.00 40.22 3.16
776 838 1.668628 CGGGCACACCAAATAAACAGC 60.669 52.381 0.00 0.00 40.22 4.40
777 839 1.337728 GGGCACACCAAATAAACAGCC 60.338 52.381 0.00 0.00 39.85 4.85
778 840 1.668628 GGCACACCAAATAAACAGCCG 60.669 52.381 0.00 0.00 35.26 5.52
779 841 1.696988 CACACCAAATAAACAGCCGC 58.303 50.000 0.00 0.00 0.00 6.53
780 842 0.239879 ACACCAAATAAACAGCCGCG 59.760 50.000 0.00 0.00 0.00 6.46
781 843 0.519519 CACCAAATAAACAGCCGCGA 59.480 50.000 8.23 0.00 0.00 5.87
782 844 1.132262 CACCAAATAAACAGCCGCGAT 59.868 47.619 8.23 0.00 0.00 4.58
783 845 1.132262 ACCAAATAAACAGCCGCGATG 59.868 47.619 8.23 8.96 0.00 3.84
784 846 1.533756 CCAAATAAACAGCCGCGATGG 60.534 52.381 8.23 0.00 42.50 3.51
795 857 3.338676 GCGATGGCGATTCGGACC 61.339 66.667 8.34 1.97 40.82 4.46
796 858 3.030308 CGATGGCGATTCGGACCG 61.030 66.667 7.84 7.84 40.82 4.79
804 866 4.501714 ATTCGGACCGCGCGCTTA 62.502 61.111 30.48 5.98 0.00 3.09
805 867 3.993376 ATTCGGACCGCGCGCTTAA 62.993 57.895 30.48 13.69 0.00 1.85
806 868 3.993376 TTCGGACCGCGCGCTTAAT 62.993 57.895 30.48 11.46 0.00 1.40
807 869 4.279535 CGGACCGCGCGCTTAATG 62.280 66.667 30.48 12.58 0.00 1.90
808 870 4.591317 GGACCGCGCGCTTAATGC 62.591 66.667 30.48 12.81 38.57 3.56
831 893 4.268687 CGCTGAAGCCCGGATATC 57.731 61.111 0.73 0.00 37.91 1.63
832 894 1.734477 CGCTGAAGCCCGGATATCG 60.734 63.158 0.73 0.00 37.91 2.92
833 895 1.666011 GCTGAAGCCCGGATATCGA 59.334 57.895 0.73 0.00 39.14 3.59
834 896 0.247736 GCTGAAGCCCGGATATCGAT 59.752 55.000 0.73 2.16 39.14 3.59
835 897 1.338200 GCTGAAGCCCGGATATCGATT 60.338 52.381 0.73 0.00 39.14 3.34
836 898 2.341257 CTGAAGCCCGGATATCGATTG 58.659 52.381 0.73 0.00 42.43 2.67
837 899 1.079503 GAAGCCCGGATATCGATTGC 58.920 55.000 0.73 0.00 42.43 3.56
838 900 0.670546 AAGCCCGGATATCGATTGCG 60.671 55.000 0.73 8.75 42.43 4.85
839 901 2.740714 GCCCGGATATCGATTGCGC 61.741 63.158 0.73 0.00 42.43 6.09
840 902 2.444624 CCCGGATATCGATTGCGCG 61.445 63.158 0.73 0.00 42.43 6.86
841 903 1.733041 CCGGATATCGATTGCGCGT 60.733 57.895 8.43 0.00 42.43 6.01
842 904 1.412226 CGGATATCGATTGCGCGTG 59.588 57.895 8.43 0.00 42.43 5.34
843 905 1.130613 GGATATCGATTGCGCGTGC 59.869 57.895 15.48 15.48 43.20 5.34
853 915 2.754473 GCGCGTGCGTTAAAAAGC 59.246 55.556 16.27 0.00 42.09 3.51
854 916 2.006587 GCGCGTGCGTTAAAAAGCA 61.007 52.632 16.27 0.00 40.99 3.91
864 926 5.952816 TGCGTTAAAAAGCACAAATTTACG 58.047 33.333 0.00 0.00 38.45 3.18
865 927 5.051641 TGCGTTAAAAAGCACAAATTTACGG 60.052 36.000 0.00 0.00 38.45 4.02
866 928 5.359493 CGTTAAAAAGCACAAATTTACGGC 58.641 37.500 0.00 0.00 0.00 5.68
867 929 5.359493 GTTAAAAAGCACAAATTTACGGCG 58.641 37.500 4.80 4.80 0.00 6.46
868 930 2.058913 AAAGCACAAATTTACGGCGG 57.941 45.000 13.24 0.00 0.00 6.13
869 931 0.242555 AAGCACAAATTTACGGCGGG 59.757 50.000 13.24 0.00 0.00 6.13
870 932 1.153920 GCACAAATTTACGGCGGGG 60.154 57.895 13.24 0.00 0.00 5.73
871 933 1.153920 CACAAATTTACGGCGGGGC 60.154 57.895 13.24 0.00 0.00 5.80
872 934 1.604023 ACAAATTTACGGCGGGGCA 60.604 52.632 13.24 0.00 0.00 5.36
873 935 1.153920 CAAATTTACGGCGGGGCAC 60.154 57.895 13.24 0.00 0.00 5.01
874 936 1.303806 AAATTTACGGCGGGGCACT 60.304 52.632 13.24 0.00 0.00 4.40
875 937 0.896479 AAATTTACGGCGGGGCACTT 60.896 50.000 13.24 0.00 0.00 3.16
876 938 0.035247 AATTTACGGCGGGGCACTTA 60.035 50.000 13.24 0.00 0.00 2.24
877 939 0.181824 ATTTACGGCGGGGCACTTAT 59.818 50.000 13.24 0.00 0.00 1.73
878 940 0.035247 TTTACGGCGGGGCACTTATT 60.035 50.000 13.24 0.00 0.00 1.40
879 941 0.035247 TTACGGCGGGGCACTTATTT 60.035 50.000 13.24 0.00 0.00 1.40
880 942 0.829333 TACGGCGGGGCACTTATTTA 59.171 50.000 13.24 0.00 0.00 1.40
881 943 0.463116 ACGGCGGGGCACTTATTTAG 60.463 55.000 13.24 0.00 0.00 1.85
882 944 1.782028 CGGCGGGGCACTTATTTAGC 61.782 60.000 0.00 0.00 0.00 3.09
883 945 1.647084 GCGGGGCACTTATTTAGCG 59.353 57.895 0.00 0.00 0.00 4.26
884 946 1.647084 CGGGGCACTTATTTAGCGC 59.353 57.895 0.00 0.00 40.08 5.92
885 947 1.647084 GGGGCACTTATTTAGCGCG 59.353 57.895 0.00 0.00 41.50 6.86
886 948 1.647084 GGGCACTTATTTAGCGCGG 59.353 57.895 8.83 0.00 32.58 6.46
887 949 1.010013 GGCACTTATTTAGCGCGGC 60.010 57.895 8.83 0.00 32.58 6.53
888 950 1.010013 GCACTTATTTAGCGCGGCC 60.010 57.895 8.83 0.00 0.00 6.13
889 951 1.436983 GCACTTATTTAGCGCGGCCT 61.437 55.000 8.83 0.00 0.00 5.19
890 952 1.014352 CACTTATTTAGCGCGGCCTT 58.986 50.000 8.83 0.00 0.00 4.35
891 953 1.400494 CACTTATTTAGCGCGGCCTTT 59.600 47.619 8.83 0.00 0.00 3.11
892 954 2.610374 CACTTATTTAGCGCGGCCTTTA 59.390 45.455 8.83 0.00 0.00 1.85
893 955 3.064271 CACTTATTTAGCGCGGCCTTTAA 59.936 43.478 8.83 0.00 0.00 1.52
894 956 3.311596 ACTTATTTAGCGCGGCCTTTAAG 59.688 43.478 8.83 8.78 0.00 1.85
895 957 1.021968 ATTTAGCGCGGCCTTTAAGG 58.978 50.000 8.83 6.64 38.80 2.69
896 958 0.036199 TTTAGCGCGGCCTTTAAGGA 60.036 50.000 16.18 0.00 37.67 3.36
897 959 0.179468 TTAGCGCGGCCTTTAAGGAT 59.821 50.000 16.18 0.00 37.67 3.24
898 960 0.531974 TAGCGCGGCCTTTAAGGATG 60.532 55.000 16.18 6.86 37.67 3.51
899 961 2.715624 CGCGGCCTTTAAGGATGC 59.284 61.111 16.18 15.49 37.67 3.91
900 962 1.819632 CGCGGCCTTTAAGGATGCT 60.820 57.895 16.18 0.00 37.67 3.79
901 963 1.776034 CGCGGCCTTTAAGGATGCTC 61.776 60.000 16.18 0.00 37.67 4.26
902 964 0.464554 GCGGCCTTTAAGGATGCTCT 60.465 55.000 16.18 0.00 37.67 4.09
903 965 1.202651 GCGGCCTTTAAGGATGCTCTA 60.203 52.381 16.18 0.00 37.67 2.43
904 966 2.760374 CGGCCTTTAAGGATGCTCTAG 58.240 52.381 16.18 0.00 37.67 2.43
905 967 2.548920 CGGCCTTTAAGGATGCTCTAGG 60.549 54.545 16.18 5.27 37.67 3.02
906 968 2.439880 GGCCTTTAAGGATGCTCTAGGT 59.560 50.000 16.18 0.00 37.67 3.08
907 969 3.117851 GGCCTTTAAGGATGCTCTAGGTT 60.118 47.826 16.18 0.00 37.67 3.50
908 970 4.130857 GCCTTTAAGGATGCTCTAGGTTC 58.869 47.826 16.18 0.00 37.67 3.62
909 971 4.709250 CCTTTAAGGATGCTCTAGGTTCC 58.291 47.826 4.75 0.00 37.67 3.62
910 972 4.164221 CCTTTAAGGATGCTCTAGGTTCCA 59.836 45.833 4.75 0.00 37.67 3.53
911 973 5.339200 CCTTTAAGGATGCTCTAGGTTCCAA 60.339 44.000 4.75 0.00 37.67 3.53
912 974 3.636153 AAGGATGCTCTAGGTTCCAAC 57.364 47.619 0.00 0.00 0.00 3.77
931 993 5.047590 TCCAACTAAACGAGCTTACTGATGA 60.048 40.000 0.00 0.00 0.00 2.92
938 1000 3.182967 CGAGCTTACTGATGAGTGGTTC 58.817 50.000 0.00 0.00 33.21 3.62
952 1014 7.888021 TGATGAGTGGTTCTTATTGGTTTACAT 59.112 33.333 0.00 0.00 0.00 2.29
953 1015 8.650143 ATGAGTGGTTCTTATTGGTTTACATT 57.350 30.769 0.00 0.00 0.00 2.71
954 1016 9.747898 ATGAGTGGTTCTTATTGGTTTACATTA 57.252 29.630 0.00 0.00 0.00 1.90
957 1019 9.528489 AGTGGTTCTTATTGGTTTACATTACAT 57.472 29.630 0.00 0.00 0.00 2.29
1067 1134 2.646175 CGATGGACGGACAGTGGGT 61.646 63.158 0.00 0.00 38.46 4.51
1092 3286 2.093106 AGGTCAACTAGTGGCTAGTCG 58.907 52.381 8.98 0.00 45.28 4.18
1258 3458 1.990060 GGCCAGAGCTACCTCCACA 60.990 63.158 0.00 0.00 38.96 4.17
1265 3471 2.534042 AGCTACCTCCACAGCTCTTA 57.466 50.000 0.00 0.00 44.83 2.10
1313 3519 2.259818 CTTGCTCGACGAGGTGCT 59.740 61.111 25.31 0.00 0.00 4.40
1326 3532 2.036256 GTGCTTCCAGGTGGCCAT 59.964 61.111 9.72 0.00 34.44 4.40
1349 3555 4.101448 GTCTGTGGGGGCAGCGAT 62.101 66.667 0.00 0.00 36.49 4.58
1350 3556 2.364973 TCTGTGGGGGCAGCGATA 60.365 61.111 0.00 0.00 36.49 2.92
1352 3558 3.466791 CTGTGGGGGCAGCGATAGG 62.467 68.421 0.00 0.00 0.00 2.57
1362 3568 4.750460 GCGATAGGTGGCGATGAA 57.250 55.556 0.00 0.00 0.00 2.57
1722 4017 1.327690 TGGATTTCTCCTCGGACCCG 61.328 60.000 1.31 1.31 42.59 5.28
2240 4561 2.579787 GTCGTCGGACATGCGGAG 60.580 66.667 9.10 0.00 42.91 4.63
2279 4600 3.181967 CGAAGGCGGCGACTTCTG 61.182 66.667 42.02 33.01 44.83 3.02
2545 4890 2.478539 GCAATTGACTCTCGGATTTGGC 60.479 50.000 10.34 0.00 0.00 4.52
2567 4912 4.386424 GCCTTTGGGAGTGGGTATAAAGAT 60.386 45.833 0.00 0.00 33.58 2.40
2573 4918 4.141551 GGGAGTGGGTATAAAGATTTCCGT 60.142 45.833 0.00 0.00 0.00 4.69
2581 4926 5.648960 GGTATAAAGATTTCCGTTGAACCCA 59.351 40.000 0.00 0.00 0.00 4.51
2632 4977 6.317088 GTGTGATATGTCAACATTGTTCTGG 58.683 40.000 0.00 0.00 37.76 3.86
2633 4978 6.149308 GTGTGATATGTCAACATTGTTCTGGA 59.851 38.462 0.00 0.00 37.76 3.86
2634 4979 6.885918 TGTGATATGTCAACATTGTTCTGGAT 59.114 34.615 0.00 0.00 37.76 3.41
2635 4980 7.066163 TGTGATATGTCAACATTGTTCTGGATC 59.934 37.037 0.00 1.04 37.76 3.36
2636 4981 4.952262 ATGTCAACATTGTTCTGGATCG 57.048 40.909 0.00 0.00 31.37 3.69
2637 4982 2.483877 TGTCAACATTGTTCTGGATCGC 59.516 45.455 0.00 0.00 0.00 4.58
2638 4983 2.483877 GTCAACATTGTTCTGGATCGCA 59.516 45.455 0.00 0.00 0.00 5.10
2639 4984 3.127548 GTCAACATTGTTCTGGATCGCAT 59.872 43.478 0.00 0.00 0.00 4.73
2640 4985 3.374988 TCAACATTGTTCTGGATCGCATC 59.625 43.478 0.00 0.00 0.00 3.91
2641 4986 3.272574 ACATTGTTCTGGATCGCATCT 57.727 42.857 0.00 0.00 0.00 2.90
2642 4987 2.941064 ACATTGTTCTGGATCGCATCTG 59.059 45.455 0.00 0.00 0.00 2.90
2643 4988 2.028420 TTGTTCTGGATCGCATCTGG 57.972 50.000 0.00 0.00 0.00 3.86
2644 4989 1.194218 TGTTCTGGATCGCATCTGGA 58.806 50.000 0.00 0.00 0.00 3.86
2645 4990 1.764723 TGTTCTGGATCGCATCTGGAT 59.235 47.619 0.00 0.00 0.00 3.41
2646 4991 2.224137 TGTTCTGGATCGCATCTGGATC 60.224 50.000 0.00 0.00 39.63 3.36
2647 4992 0.600057 TCTGGATCGCATCTGGATCG 59.400 55.000 0.00 0.00 40.93 3.69
2648 4993 1.005748 TGGATCGCATCTGGATCGC 60.006 57.895 0.00 0.00 40.93 4.58
2649 4994 1.005748 GGATCGCATCTGGATCGCA 60.006 57.895 0.00 0.00 40.93 5.10
2650 4995 0.390866 GGATCGCATCTGGATCGCAT 60.391 55.000 0.00 0.00 40.93 4.73
2651 4996 0.997932 GATCGCATCTGGATCGCATC 59.002 55.000 0.00 0.00 31.85 3.91
2652 4997 0.607112 ATCGCATCTGGATCGCATCT 59.393 50.000 0.00 0.00 0.00 2.90
2653 4998 0.319297 TCGCATCTGGATCGCATCTG 60.319 55.000 0.00 0.00 0.00 2.90
2654 4999 1.289800 CGCATCTGGATCGCATCTGG 61.290 60.000 0.00 0.00 0.00 3.86
2743 5094 2.695970 CCTCCTCCTCTCCCTCCGT 61.696 68.421 0.00 0.00 0.00 4.69
2809 5160 2.503382 GGCGTGGGATCTCCTCTCC 61.503 68.421 0.00 0.00 36.20 3.71
2817 5168 0.818445 GATCTCCTCTCCCGTGCGTA 60.818 60.000 0.00 0.00 0.00 4.42
2852 5203 4.579384 CCCAAGGCGTGTGGTGGT 62.579 66.667 0.00 0.00 34.01 4.16
3218 5581 1.886886 ACGTAGTTGCCGGTGAAAAT 58.113 45.000 1.90 0.00 37.78 1.82
3398 5761 1.160137 GAGCATCGTTTTGTGGAGCT 58.840 50.000 0.00 0.00 0.00 4.09
3509 5872 1.303561 GCTTGGTCATGCCTGGTCA 60.304 57.895 7.54 0.00 38.35 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.593006 GTGGCTGGATTTACATCGTCG 59.407 52.381 0.00 0.00 0.00 5.12
8 9 2.290008 TGTGTGGCTGGATTTACATCGT 60.290 45.455 0.00 0.00 0.00 3.73
10 11 3.696051 ACATGTGTGGCTGGATTTACATC 59.304 43.478 0.00 0.00 0.00 3.06
11 12 3.700538 ACATGTGTGGCTGGATTTACAT 58.299 40.909 0.00 0.00 0.00 2.29
12 13 3.153369 ACATGTGTGGCTGGATTTACA 57.847 42.857 0.00 0.00 0.00 2.41
13 14 4.261801 ACTACATGTGTGGCTGGATTTAC 58.738 43.478 9.11 0.00 0.00 2.01
14 15 4.513442 GACTACATGTGTGGCTGGATTTA 58.487 43.478 9.11 0.00 0.00 1.40
15 16 3.347216 GACTACATGTGTGGCTGGATTT 58.653 45.455 9.11 0.00 0.00 2.17
16 17 2.677902 CGACTACATGTGTGGCTGGATT 60.678 50.000 9.11 0.00 0.00 3.01
17 18 1.134699 CGACTACATGTGTGGCTGGAT 60.135 52.381 9.11 0.00 0.00 3.41
18 19 0.246360 CGACTACATGTGTGGCTGGA 59.754 55.000 9.11 0.00 0.00 3.86
19 20 0.246360 TCGACTACATGTGTGGCTGG 59.754 55.000 9.11 0.00 0.00 4.85
20 21 1.067565 AGTCGACTACATGTGTGGCTG 60.068 52.381 18.46 0.94 0.00 4.85
21 22 1.257743 AGTCGACTACATGTGTGGCT 58.742 50.000 18.46 0.00 0.00 4.75
22 23 2.080286 AAGTCGACTACATGTGTGGC 57.920 50.000 20.39 2.28 0.00 5.01
23 24 4.625742 CCTTTAAGTCGACTACATGTGTGG 59.374 45.833 20.39 9.35 0.00 4.17
24 25 4.625742 CCCTTTAAGTCGACTACATGTGTG 59.374 45.833 20.39 3.79 0.00 3.82
25 26 4.817517 CCCTTTAAGTCGACTACATGTGT 58.182 43.478 20.39 3.44 0.00 3.72
26 27 3.617263 GCCCTTTAAGTCGACTACATGTG 59.383 47.826 20.39 8.00 0.00 3.21
27 28 3.259876 TGCCCTTTAAGTCGACTACATGT 59.740 43.478 20.39 5.08 0.00 3.21
28 29 3.857052 TGCCCTTTAAGTCGACTACATG 58.143 45.455 20.39 10.23 0.00 3.21
29 30 4.251268 GTTGCCCTTTAAGTCGACTACAT 58.749 43.478 20.39 5.93 0.00 2.29
30 31 3.069872 TGTTGCCCTTTAAGTCGACTACA 59.930 43.478 20.39 13.00 0.00 2.74
31 32 3.656559 TGTTGCCCTTTAAGTCGACTAC 58.343 45.455 20.39 10.36 0.00 2.73
32 33 3.863400 GCTGTTGCCCTTTAAGTCGACTA 60.863 47.826 20.39 0.04 0.00 2.59
33 34 2.767505 CTGTTGCCCTTTAAGTCGACT 58.232 47.619 13.58 13.58 0.00 4.18
34 35 1.197036 GCTGTTGCCCTTTAAGTCGAC 59.803 52.381 7.70 7.70 0.00 4.20
35 36 1.519408 GCTGTTGCCCTTTAAGTCGA 58.481 50.000 0.00 0.00 0.00 4.20
47 48 1.226128 GAAATCGAGCGGCTGTTGC 60.226 57.895 7.50 0.00 38.76 4.17
48 49 0.729116 ATGAAATCGAGCGGCTGTTG 59.271 50.000 7.50 0.00 0.00 3.33
49 50 0.729116 CATGAAATCGAGCGGCTGTT 59.271 50.000 7.50 0.00 0.00 3.16
50 51 1.091771 CCATGAAATCGAGCGGCTGT 61.092 55.000 7.50 0.00 0.00 4.40
51 52 1.091771 ACCATGAAATCGAGCGGCTG 61.092 55.000 7.50 0.00 0.00 4.85
52 53 0.811616 GACCATGAAATCGAGCGGCT 60.812 55.000 0.00 0.00 0.00 5.52
53 54 1.643832 GACCATGAAATCGAGCGGC 59.356 57.895 0.00 0.00 0.00 6.53
54 55 0.806102 ACGACCATGAAATCGAGCGG 60.806 55.000 17.33 0.00 40.86 5.52
55 56 0.298707 CACGACCATGAAATCGAGCG 59.701 55.000 17.33 0.00 40.86 5.03
56 57 0.026803 GCACGACCATGAAATCGAGC 59.973 55.000 17.33 16.61 45.12 5.03
57 58 0.298707 CGCACGACCATGAAATCGAG 59.701 55.000 17.33 12.00 40.86 4.04
58 59 0.109039 TCGCACGACCATGAAATCGA 60.109 50.000 17.33 0.00 40.86 3.59
59 60 0.718904 TTCGCACGACCATGAAATCG 59.281 50.000 11.06 11.06 43.97 3.34
60 61 2.892373 TTTCGCACGACCATGAAATC 57.108 45.000 0.00 0.00 0.00 2.17
61 62 3.727673 CGATTTTCGCACGACCATGAAAT 60.728 43.478 0.00 0.00 31.14 2.17
62 63 2.412195 CGATTTTCGCACGACCATGAAA 60.412 45.455 0.00 0.00 31.14 2.69
63 64 1.127766 CGATTTTCGCACGACCATGAA 59.872 47.619 0.00 0.00 31.14 2.57
64 65 0.718904 CGATTTTCGCACGACCATGA 59.281 50.000 0.00 0.00 31.14 3.07
65 66 0.247655 CCGATTTTCGCACGACCATG 60.248 55.000 0.00 0.00 38.82 3.66
66 67 0.672401 ACCGATTTTCGCACGACCAT 60.672 50.000 0.00 0.00 38.82 3.55
67 68 0.881159 AACCGATTTTCGCACGACCA 60.881 50.000 0.00 0.00 38.82 4.02
68 69 0.452122 CAACCGATTTTCGCACGACC 60.452 55.000 0.00 0.00 38.82 4.79
69 70 1.058057 GCAACCGATTTTCGCACGAC 61.058 55.000 0.00 0.00 38.82 4.34
70 71 1.205568 GCAACCGATTTTCGCACGA 59.794 52.632 0.00 0.00 38.82 4.35
71 72 1.082431 TGCAACCGATTTTCGCACG 60.082 52.632 0.00 0.00 38.82 5.34
72 73 2.420097 GTGCAACCGATTTTCGCAC 58.580 52.632 0.00 0.00 45.25 5.34
73 74 0.595588 ATGTGCAACCGATTTTCGCA 59.404 45.000 0.00 0.00 38.82 5.10
74 75 0.984109 CATGTGCAACCGATTTTCGC 59.016 50.000 0.00 0.00 38.82 4.70
75 76 2.241722 GACATGTGCAACCGATTTTCG 58.758 47.619 1.15 0.00 40.07 3.46
76 77 2.241722 CGACATGTGCAACCGATTTTC 58.758 47.619 1.15 0.00 34.36 2.29
77 78 1.606668 ACGACATGTGCAACCGATTTT 59.393 42.857 1.15 0.00 34.36 1.82
78 79 1.196808 GACGACATGTGCAACCGATTT 59.803 47.619 1.15 0.00 34.36 2.17
79 80 0.796312 GACGACATGTGCAACCGATT 59.204 50.000 1.15 0.00 34.36 3.34
80 81 0.037326 AGACGACATGTGCAACCGAT 60.037 50.000 1.15 0.00 34.36 4.18
81 82 0.943835 CAGACGACATGTGCAACCGA 60.944 55.000 1.15 0.00 34.36 4.69
82 83 1.221466 ACAGACGACATGTGCAACCG 61.221 55.000 1.15 2.09 34.36 4.44
83 84 0.235665 CACAGACGACATGTGCAACC 59.764 55.000 1.15 0.00 41.39 3.77
84 85 0.235665 CCACAGACGACATGTGCAAC 59.764 55.000 1.15 0.00 45.37 4.17
85 86 0.105778 TCCACAGACGACATGTGCAA 59.894 50.000 1.15 2.79 45.37 4.08
86 87 0.319813 CTCCACAGACGACATGTGCA 60.320 55.000 1.15 0.00 45.37 4.57
87 88 1.630244 GCTCCACAGACGACATGTGC 61.630 60.000 1.15 0.00 45.37 4.57
88 89 0.319813 TGCTCCACAGACGACATGTG 60.320 55.000 1.15 10.90 46.11 3.21
89 90 2.049435 TGCTCCACAGACGACATGT 58.951 52.632 0.00 0.00 0.00 3.21
90 91 4.994744 TGCTCCACAGACGACATG 57.005 55.556 0.00 0.00 0.00 3.21
99 100 0.396435 AACATCGGAACTGCTCCACA 59.604 50.000 0.00 0.00 45.74 4.17
100 101 2.271800 CTAACATCGGAACTGCTCCAC 58.728 52.381 0.00 0.00 45.74 4.02
101 102 1.405526 GCTAACATCGGAACTGCTCCA 60.406 52.381 0.00 0.00 45.74 3.86
102 103 1.291132 GCTAACATCGGAACTGCTCC 58.709 55.000 0.00 0.00 41.40 4.70
103 104 1.291132 GGCTAACATCGGAACTGCTC 58.709 55.000 0.00 0.00 0.00 4.26
104 105 0.613260 TGGCTAACATCGGAACTGCT 59.387 50.000 0.00 0.00 0.00 4.24
105 106 1.009829 CTGGCTAACATCGGAACTGC 58.990 55.000 0.00 0.00 0.00 4.40
106 107 1.009829 GCTGGCTAACATCGGAACTG 58.990 55.000 0.00 0.00 0.00 3.16
107 108 0.613260 TGCTGGCTAACATCGGAACT 59.387 50.000 0.00 0.00 0.00 3.01
108 109 1.130561 GTTGCTGGCTAACATCGGAAC 59.869 52.381 0.00 0.00 0.00 3.62
109 110 1.003118 AGTTGCTGGCTAACATCGGAA 59.997 47.619 9.28 0.00 0.00 4.30
110 111 0.613260 AGTTGCTGGCTAACATCGGA 59.387 50.000 9.28 0.00 0.00 4.55
111 112 1.453155 AAGTTGCTGGCTAACATCGG 58.547 50.000 9.28 0.00 0.00 4.18
112 113 3.559238 AAAAGTTGCTGGCTAACATCG 57.441 42.857 9.28 0.00 0.00 3.84
113 114 6.254281 TCTTAAAAGTTGCTGGCTAACATC 57.746 37.500 9.28 0.00 0.00 3.06
114 115 5.335976 GCTCTTAAAAGTTGCTGGCTAACAT 60.336 40.000 9.28 0.00 0.00 2.71
115 116 4.023193 GCTCTTAAAAGTTGCTGGCTAACA 60.023 41.667 9.28 0.00 0.00 2.41
116 117 4.023193 TGCTCTTAAAAGTTGCTGGCTAAC 60.023 41.667 10.12 0.00 0.00 2.34
117 118 4.141287 TGCTCTTAAAAGTTGCTGGCTAA 58.859 39.130 10.12 0.00 0.00 3.09
118 119 3.750371 TGCTCTTAAAAGTTGCTGGCTA 58.250 40.909 10.12 0.00 0.00 3.93
119 120 2.586425 TGCTCTTAAAAGTTGCTGGCT 58.414 42.857 10.12 0.00 0.00 4.75
120 121 3.192212 AGATGCTCTTAAAAGTTGCTGGC 59.808 43.478 10.12 0.00 0.00 4.85
121 122 4.142513 GGAGATGCTCTTAAAAGTTGCTGG 60.143 45.833 0.00 0.00 0.00 4.85
122 123 4.456911 TGGAGATGCTCTTAAAAGTTGCTG 59.543 41.667 0.00 0.00 0.00 4.41
123 124 4.655963 TGGAGATGCTCTTAAAAGTTGCT 58.344 39.130 0.00 0.00 0.00 3.91
124 125 5.157067 GTTGGAGATGCTCTTAAAAGTTGC 58.843 41.667 0.00 4.42 0.00 4.17
125 126 6.317789 TGTTGGAGATGCTCTTAAAAGTTG 57.682 37.500 0.00 0.00 0.00 3.16
126 127 6.513393 CGTTGTTGGAGATGCTCTTAAAAGTT 60.513 38.462 0.00 0.00 0.00 2.66
127 128 5.049405 CGTTGTTGGAGATGCTCTTAAAAGT 60.049 40.000 0.00 0.00 0.00 2.66
128 129 5.385617 CGTTGTTGGAGATGCTCTTAAAAG 58.614 41.667 0.00 0.00 0.00 2.27
129 130 4.320202 GCGTTGTTGGAGATGCTCTTAAAA 60.320 41.667 0.00 0.00 0.00 1.52
130 131 3.188460 GCGTTGTTGGAGATGCTCTTAAA 59.812 43.478 0.00 0.00 0.00 1.52
131 132 2.742053 GCGTTGTTGGAGATGCTCTTAA 59.258 45.455 0.00 0.00 0.00 1.85
161 163 1.226030 AACGTCTTTTTAGCGCGCCT 61.226 50.000 30.33 17.79 0.00 5.52
187 190 1.529438 GTCAAAACAGGCGATCAACGA 59.471 47.619 0.00 0.00 45.77 3.85
230 233 2.657184 GTTAAAATTTGCAGCGGTCGT 58.343 42.857 0.00 0.00 0.00 4.34
233 236 2.389998 CACGTTAAAATTTGCAGCGGT 58.610 42.857 11.94 0.00 0.00 5.68
249 252 0.458543 CTGGAGCTATTCACGCACGT 60.459 55.000 0.00 0.00 0.00 4.49
358 367 6.502652 TCGGTGATTTAAATTATGCCATGTG 58.497 36.000 1.43 0.00 0.00 3.21
381 397 7.434897 TGCACTTTTATGTCATGAACTTGTTTC 59.565 33.333 0.00 0.00 34.41 2.78
426 445 3.023119 GTTGGATGATGTTGTGGGCATA 58.977 45.455 0.00 0.00 0.00 3.14
543 568 3.004839 GTCTTCGGATGATGAATCGGAGA 59.995 47.826 0.00 0.00 43.27 3.71
614 660 1.134220 TCTTGCCAACACCTTTCGAGT 60.134 47.619 0.00 0.00 0.00 4.18
647 696 0.376152 CCTCACACATCTTCGCATGC 59.624 55.000 7.91 7.91 0.00 4.06
716 778 2.095110 TGAGAGGCATGAATTTTGCGTG 60.095 45.455 12.44 0.00 41.07 5.34
725 787 0.108472 CGCACTCTGAGAGGCATGAA 60.108 55.000 14.83 0.00 33.35 2.57
751 813 0.963355 TATTTGGTGTGCCCGCTTCC 60.963 55.000 0.00 0.00 35.15 3.46
752 814 0.885196 TTATTTGGTGTGCCCGCTTC 59.115 50.000 0.00 0.00 35.15 3.86
753 815 1.000394 GTTTATTTGGTGTGCCCGCTT 60.000 47.619 0.00 0.00 35.15 4.68
754 816 0.601057 GTTTATTTGGTGTGCCCGCT 59.399 50.000 0.00 0.00 35.15 5.52
755 817 0.315568 TGTTTATTTGGTGTGCCCGC 59.684 50.000 0.00 0.00 35.15 6.13
756 818 1.668628 GCTGTTTATTTGGTGTGCCCG 60.669 52.381 0.00 0.00 35.15 6.13
757 819 1.337728 GGCTGTTTATTTGGTGTGCCC 60.338 52.381 0.00 0.00 33.66 5.36
758 820 1.668628 CGGCTGTTTATTTGGTGTGCC 60.669 52.381 0.00 0.00 36.14 5.01
759 821 1.696988 CGGCTGTTTATTTGGTGTGC 58.303 50.000 0.00 0.00 0.00 4.57
760 822 1.696988 GCGGCTGTTTATTTGGTGTG 58.303 50.000 0.00 0.00 0.00 3.82
761 823 0.239879 CGCGGCTGTTTATTTGGTGT 59.760 50.000 0.00 0.00 0.00 4.16
762 824 0.519519 TCGCGGCTGTTTATTTGGTG 59.480 50.000 6.13 0.00 0.00 4.17
763 825 1.132262 CATCGCGGCTGTTTATTTGGT 59.868 47.619 6.13 0.00 0.00 3.67
764 826 1.533756 CCATCGCGGCTGTTTATTTGG 60.534 52.381 6.13 0.00 0.00 3.28
765 827 1.826327 CCATCGCGGCTGTTTATTTG 58.174 50.000 6.13 0.00 0.00 2.32
778 840 3.338676 GGTCCGAATCGCCATCGC 61.339 66.667 0.00 0.00 38.93 4.58
779 841 3.030308 CGGTCCGAATCGCCATCG 61.030 66.667 4.91 0.00 39.92 3.84
780 842 3.338676 GCGGTCCGAATCGCCATC 61.339 66.667 17.49 0.00 45.42 3.51
787 849 3.993376 TTAAGCGCGCGGTCCGAAT 62.993 57.895 36.00 21.53 40.02 3.34
788 850 3.993376 ATTAAGCGCGCGGTCCGAA 62.993 57.895 36.00 27.12 40.02 4.30
789 851 4.501714 ATTAAGCGCGCGGTCCGA 62.502 61.111 36.00 23.02 40.02 4.55
790 852 4.279535 CATTAAGCGCGCGGTCCG 62.280 66.667 36.00 19.11 40.75 4.79
791 853 4.591317 GCATTAAGCGCGCGGTCC 62.591 66.667 36.00 16.98 0.00 4.46
811 873 2.100879 ATATCCGGGCTTCAGCGGAC 62.101 60.000 0.00 0.00 43.26 4.79
812 874 1.816863 GATATCCGGGCTTCAGCGGA 61.817 60.000 0.00 4.34 43.26 5.54
813 875 1.374758 GATATCCGGGCTTCAGCGG 60.375 63.158 0.00 0.00 43.26 5.52
814 876 1.734477 CGATATCCGGGCTTCAGCG 60.734 63.158 0.00 0.00 43.26 5.18
815 877 0.247736 ATCGATATCCGGGCTTCAGC 59.752 55.000 0.00 0.00 39.14 4.26
816 878 2.341257 CAATCGATATCCGGGCTTCAG 58.659 52.381 0.00 0.00 39.14 3.02
817 879 1.608025 GCAATCGATATCCGGGCTTCA 60.608 52.381 0.00 0.00 39.14 3.02
818 880 1.079503 GCAATCGATATCCGGGCTTC 58.920 55.000 0.00 0.00 39.14 3.86
819 881 0.670546 CGCAATCGATATCCGGGCTT 60.671 55.000 0.00 0.00 39.14 4.35
820 882 1.079819 CGCAATCGATATCCGGGCT 60.080 57.895 0.00 0.00 39.14 5.19
821 883 2.740714 GCGCAATCGATATCCGGGC 61.741 63.158 0.30 4.40 39.14 6.13
822 884 2.444624 CGCGCAATCGATATCCGGG 61.445 63.158 8.75 6.64 39.14 5.73
823 885 1.733041 ACGCGCAATCGATATCCGG 60.733 57.895 5.73 0.00 39.14 5.14
824 886 1.412226 CACGCGCAATCGATATCCG 59.588 57.895 5.73 3.04 38.10 4.18
825 887 1.130613 GCACGCGCAATCGATATCC 59.869 57.895 5.73 0.00 38.36 2.59
826 888 1.225209 CGCACGCGCAATCGATATC 60.225 57.895 5.73 0.00 38.40 1.63
827 889 1.487452 AACGCACGCGCAATCGATAT 61.487 50.000 12.02 2.72 44.19 1.63
828 890 0.866483 TAACGCACGCGCAATCGATA 60.866 50.000 12.02 8.25 44.19 2.92
829 891 1.688422 TTAACGCACGCGCAATCGAT 61.688 50.000 12.02 9.13 44.19 3.59
830 892 1.887909 TTTAACGCACGCGCAATCGA 61.888 50.000 12.02 0.00 44.19 3.59
831 893 1.055405 TTTTAACGCACGCGCAATCG 61.055 50.000 12.02 9.52 44.19 3.34
832 894 1.046230 TTTTTAACGCACGCGCAATC 58.954 45.000 12.02 0.00 44.19 2.67
833 895 1.049251 CTTTTTAACGCACGCGCAAT 58.951 45.000 12.02 0.65 44.19 3.56
834 896 1.533165 GCTTTTTAACGCACGCGCAA 61.533 50.000 12.02 3.06 44.19 4.85
835 897 2.006587 GCTTTTTAACGCACGCGCA 61.007 52.632 12.02 0.00 44.19 6.09
836 898 2.006587 TGCTTTTTAACGCACGCGC 61.007 52.632 12.02 0.00 44.19 6.86
837 899 1.758371 GTGCTTTTTAACGCACGCG 59.242 52.632 10.36 10.36 45.74 6.01
841 903 5.051641 CCGTAAATTTGTGCTTTTTAACGCA 60.052 36.000 0.00 0.00 0.00 5.24
842 904 5.359493 CCGTAAATTTGTGCTTTTTAACGC 58.641 37.500 0.00 0.00 0.00 4.84
843 905 5.359493 GCCGTAAATTTGTGCTTTTTAACG 58.641 37.500 0.00 0.00 0.00 3.18
844 906 5.359493 CGCCGTAAATTTGTGCTTTTTAAC 58.641 37.500 0.00 0.00 0.00 2.01
845 907 4.444720 CCGCCGTAAATTTGTGCTTTTTAA 59.555 37.500 0.00 0.00 0.00 1.52
846 908 3.982058 CCGCCGTAAATTTGTGCTTTTTA 59.018 39.130 0.00 0.00 0.00 1.52
847 909 2.797719 CCGCCGTAAATTTGTGCTTTTT 59.202 40.909 0.00 0.00 0.00 1.94
848 910 2.399448 CCGCCGTAAATTTGTGCTTTT 58.601 42.857 0.00 0.00 0.00 2.27
849 911 1.336424 CCCGCCGTAAATTTGTGCTTT 60.336 47.619 0.00 0.00 0.00 3.51
850 912 0.242555 CCCGCCGTAAATTTGTGCTT 59.757 50.000 0.00 0.00 0.00 3.91
851 913 1.591504 CCCCGCCGTAAATTTGTGCT 61.592 55.000 0.00 0.00 0.00 4.40
852 914 1.153920 CCCCGCCGTAAATTTGTGC 60.154 57.895 0.00 0.00 0.00 4.57
853 915 1.153920 GCCCCGCCGTAAATTTGTG 60.154 57.895 0.00 0.00 0.00 3.33
854 916 1.604023 TGCCCCGCCGTAAATTTGT 60.604 52.632 0.00 0.00 0.00 2.83
855 917 1.153920 GTGCCCCGCCGTAAATTTG 60.154 57.895 0.00 0.00 0.00 2.32
856 918 0.896479 AAGTGCCCCGCCGTAAATTT 60.896 50.000 0.00 0.00 0.00 1.82
857 919 0.035247 TAAGTGCCCCGCCGTAAATT 60.035 50.000 0.00 0.00 0.00 1.82
858 920 0.181824 ATAAGTGCCCCGCCGTAAAT 59.818 50.000 0.00 0.00 0.00 1.40
859 921 0.035247 AATAAGTGCCCCGCCGTAAA 60.035 50.000 0.00 0.00 0.00 2.01
860 922 0.035247 AAATAAGTGCCCCGCCGTAA 60.035 50.000 0.00 0.00 0.00 3.18
861 923 0.829333 TAAATAAGTGCCCCGCCGTA 59.171 50.000 0.00 0.00 0.00 4.02
862 924 0.463116 CTAAATAAGTGCCCCGCCGT 60.463 55.000 0.00 0.00 0.00 5.68
863 925 1.782028 GCTAAATAAGTGCCCCGCCG 61.782 60.000 0.00 0.00 0.00 6.46
864 926 1.782028 CGCTAAATAAGTGCCCCGCC 61.782 60.000 0.00 0.00 0.00 6.13
865 927 1.647084 CGCTAAATAAGTGCCCCGC 59.353 57.895 0.00 0.00 0.00 6.13
871 933 1.014352 AAGGCCGCGCTAAATAAGTG 58.986 50.000 5.56 0.00 38.84 3.16
872 934 1.746470 AAAGGCCGCGCTAAATAAGT 58.254 45.000 5.56 0.00 0.00 2.24
873 935 3.303791 CCTTAAAGGCCGCGCTAAATAAG 60.304 47.826 5.56 6.42 0.00 1.73
874 936 2.614983 CCTTAAAGGCCGCGCTAAATAA 59.385 45.455 5.56 0.00 0.00 1.40
875 937 2.158928 TCCTTAAAGGCCGCGCTAAATA 60.159 45.455 5.56 0.00 34.61 1.40
876 938 1.021968 CCTTAAAGGCCGCGCTAAAT 58.978 50.000 5.56 0.00 0.00 1.40
877 939 0.036199 TCCTTAAAGGCCGCGCTAAA 60.036 50.000 5.56 0.00 34.61 1.85
878 940 0.179468 ATCCTTAAAGGCCGCGCTAA 59.821 50.000 5.56 0.00 34.61 3.09
879 941 0.531974 CATCCTTAAAGGCCGCGCTA 60.532 55.000 5.56 0.00 34.61 4.26
880 942 1.819632 CATCCTTAAAGGCCGCGCT 60.820 57.895 5.56 0.00 34.61 5.92
881 943 2.715624 CATCCTTAAAGGCCGCGC 59.284 61.111 0.00 0.00 34.61 6.86
882 944 1.776034 GAGCATCCTTAAAGGCCGCG 61.776 60.000 0.00 0.00 37.34 6.46
883 945 0.464554 AGAGCATCCTTAAAGGCCGC 60.465 55.000 0.00 0.00 34.61 6.53
884 946 2.548920 CCTAGAGCATCCTTAAAGGCCG 60.549 54.545 0.00 0.00 34.61 6.13
885 947 2.439880 ACCTAGAGCATCCTTAAAGGCC 59.560 50.000 0.00 0.00 34.61 5.19
886 948 3.847671 ACCTAGAGCATCCTTAAAGGC 57.152 47.619 0.00 0.00 34.61 4.35
887 949 4.164221 TGGAACCTAGAGCATCCTTAAAGG 59.836 45.833 0.00 0.00 36.46 3.11
888 950 5.359194 TGGAACCTAGAGCATCCTTAAAG 57.641 43.478 0.00 0.00 33.66 1.85
889 951 5.250774 AGTTGGAACCTAGAGCATCCTTAAA 59.749 40.000 0.00 0.00 33.66 1.52
890 952 4.783227 AGTTGGAACCTAGAGCATCCTTAA 59.217 41.667 0.00 0.00 33.66 1.85
891 953 4.362677 AGTTGGAACCTAGAGCATCCTTA 58.637 43.478 0.00 0.00 33.66 2.69
892 954 3.185455 AGTTGGAACCTAGAGCATCCTT 58.815 45.455 0.00 0.00 33.66 3.36
893 955 2.839228 AGTTGGAACCTAGAGCATCCT 58.161 47.619 0.00 0.00 33.66 3.24
894 956 4.755266 TTAGTTGGAACCTAGAGCATCC 57.245 45.455 0.00 0.00 33.66 3.51
895 957 4.567159 CGTTTAGTTGGAACCTAGAGCATC 59.433 45.833 0.00 0.00 0.00 3.91
896 958 4.222145 TCGTTTAGTTGGAACCTAGAGCAT 59.778 41.667 0.00 0.00 0.00 3.79
897 959 3.575256 TCGTTTAGTTGGAACCTAGAGCA 59.425 43.478 0.00 0.00 0.00 4.26
898 960 4.174762 CTCGTTTAGTTGGAACCTAGAGC 58.825 47.826 0.00 0.00 0.00 4.09
899 961 4.082136 AGCTCGTTTAGTTGGAACCTAGAG 60.082 45.833 0.00 0.00 0.00 2.43
900 962 3.830755 AGCTCGTTTAGTTGGAACCTAGA 59.169 43.478 0.00 0.00 0.00 2.43
901 963 4.189639 AGCTCGTTTAGTTGGAACCTAG 57.810 45.455 0.00 0.00 0.00 3.02
902 964 4.612264 AAGCTCGTTTAGTTGGAACCTA 57.388 40.909 0.00 0.00 0.00 3.08
903 965 3.487120 AAGCTCGTTTAGTTGGAACCT 57.513 42.857 0.00 0.00 0.00 3.50
904 966 4.151867 CAGTAAGCTCGTTTAGTTGGAACC 59.848 45.833 0.00 0.00 0.00 3.62
905 967 4.986659 TCAGTAAGCTCGTTTAGTTGGAAC 59.013 41.667 0.00 0.00 0.00 3.62
906 968 5.204409 TCAGTAAGCTCGTTTAGTTGGAA 57.796 39.130 0.00 0.00 0.00 3.53
907 969 4.859304 TCAGTAAGCTCGTTTAGTTGGA 57.141 40.909 0.00 0.00 0.00 3.53
908 970 5.168569 TCATCAGTAAGCTCGTTTAGTTGG 58.831 41.667 0.00 0.00 0.00 3.77
909 971 5.864474 ACTCATCAGTAAGCTCGTTTAGTTG 59.136 40.000 0.00 0.00 0.00 3.16
910 972 5.864474 CACTCATCAGTAAGCTCGTTTAGTT 59.136 40.000 0.00 0.00 0.00 2.24
911 973 5.403246 CACTCATCAGTAAGCTCGTTTAGT 58.597 41.667 0.00 0.00 0.00 2.24
912 974 4.800993 CCACTCATCAGTAAGCTCGTTTAG 59.199 45.833 0.00 0.00 0.00 1.85
931 993 8.927675 TGTAATGTAAACCAATAAGAACCACT 57.072 30.769 0.00 0.00 0.00 4.00
957 1019 9.923143 TTCGATCTCAACTCTAAGTAAATCAAA 57.077 29.630 0.00 0.00 0.00 2.69
984 1050 6.041409 GTGAATGACAGGATAGGATCTCTCAA 59.959 42.308 0.00 0.00 0.00 3.02
1029 1095 1.521681 GGCATCGACCAGGTAGTGC 60.522 63.158 14.66 14.66 0.00 4.40
1031 1097 2.506065 GAGGCATCGACCAGGTAGT 58.494 57.895 0.00 0.00 0.00 2.73
1067 1134 3.857157 AGCCACTAGTTGACCTTTGAA 57.143 42.857 0.00 0.00 0.00 2.69
1092 3286 0.814457 AGATCGCCGATCTATCTGCC 59.186 55.000 27.03 0.00 46.15 4.85
1096 3290 2.425312 ACATCCAGATCGCCGATCTATC 59.575 50.000 27.57 3.08 46.25 2.08
1097 3291 2.425312 GACATCCAGATCGCCGATCTAT 59.575 50.000 27.57 16.62 46.25 1.98
1098 3292 1.813178 GACATCCAGATCGCCGATCTA 59.187 52.381 27.57 15.05 46.25 1.98
1304 3510 2.743718 CACCTGGAAGCACCTCGT 59.256 61.111 0.00 0.00 39.86 4.18
1310 3516 1.304381 GAATGGCCACCTGGAAGCA 60.304 57.895 8.16 0.00 37.39 3.91
1313 3519 0.251297 CACAGAATGGCCACCTGGAA 60.251 55.000 29.73 0.65 43.62 3.53
1326 3532 2.055689 CTGCCCCCACAGACACAGAA 62.056 60.000 0.00 0.00 40.25 3.02
1348 3554 1.069765 CGCCTTCATCGCCACCTAT 59.930 57.895 0.00 0.00 0.00 2.57
1349 3555 2.499205 CGCCTTCATCGCCACCTA 59.501 61.111 0.00 0.00 0.00 3.08
1350 3556 4.473520 CCGCCTTCATCGCCACCT 62.474 66.667 0.00 0.00 0.00 4.00
1352 3558 3.969250 TTCCCGCCTTCATCGCCAC 62.969 63.158 0.00 0.00 0.00 5.01
1353 3559 3.680620 CTTCCCGCCTTCATCGCCA 62.681 63.158 0.00 0.00 0.00 5.69
1355 3561 2.897350 CCTTCCCGCCTTCATCGC 60.897 66.667 0.00 0.00 0.00 4.58
1356 3562 2.897350 GCCTTCCCGCCTTCATCG 60.897 66.667 0.00 0.00 0.00 3.84
1357 3563 2.897350 CGCCTTCCCGCCTTCATC 60.897 66.667 0.00 0.00 0.00 2.92
1358 3564 3.682292 GACGCCTTCCCGCCTTCAT 62.682 63.158 0.00 0.00 0.00 2.57
1359 3565 4.388499 GACGCCTTCCCGCCTTCA 62.388 66.667 0.00 0.00 0.00 3.02
1360 3566 3.682292 ATGACGCCTTCCCGCCTTC 62.682 63.158 0.00 0.00 0.00 3.46
1361 3567 3.717294 ATGACGCCTTCCCGCCTT 61.717 61.111 0.00 0.00 0.00 4.35
1362 3568 4.473520 CATGACGCCTTCCCGCCT 62.474 66.667 0.00 0.00 0.00 5.52
1561 3847 2.437895 AGCCAGATCCGTCGACGA 60.438 61.111 37.65 23.58 43.02 4.20
1572 3858 3.251509 TTGAGCCTGCCAGCCAGA 61.252 61.111 0.00 0.00 44.64 3.86
1701 3996 0.178301 GGTCCGAGGAGAAATCCACC 59.822 60.000 0.00 0.00 0.00 4.61
2058 4376 1.414550 GGGAGGAGGAGAAGCATGTAC 59.585 57.143 0.00 0.00 0.00 2.90
2536 4881 0.611896 ACTCCCAAAGGCCAAATCCG 60.612 55.000 5.01 0.00 0.00 4.18
2545 4890 4.855298 TCTTTATACCCACTCCCAAAGG 57.145 45.455 0.00 0.00 0.00 3.11
2567 4912 0.882927 CGAGCTGGGTTCAACGGAAA 60.883 55.000 0.00 0.00 34.13 3.13
2573 4918 0.753867 TACACACGAGCTGGGTTCAA 59.246 50.000 0.00 0.00 37.77 2.69
2581 4926 3.021269 TCACGAAAATACACACGAGCT 57.979 42.857 0.00 0.00 0.00 4.09
2632 4977 0.997932 GATGCGATCCAGATGCGATC 59.002 55.000 0.00 0.00 34.08 3.69
2633 4978 0.607112 AGATGCGATCCAGATGCGAT 59.393 50.000 0.00 0.00 0.00 4.58
2634 4979 0.319297 CAGATGCGATCCAGATGCGA 60.319 55.000 0.00 0.00 0.00 5.10
2635 4980 1.289800 CCAGATGCGATCCAGATGCG 61.290 60.000 0.00 0.00 0.00 4.73
2636 4981 0.034476 TCCAGATGCGATCCAGATGC 59.966 55.000 0.00 0.00 0.00 3.91
2637 4982 2.347731 CATCCAGATGCGATCCAGATG 58.652 52.381 0.00 0.00 34.82 2.90
2638 4983 2.764439 CATCCAGATGCGATCCAGAT 57.236 50.000 0.00 0.00 31.39 2.90
2852 5203 1.455773 AGATCCCAGATCGGTCGCA 60.456 57.895 0.00 0.00 0.00 5.10
3017 5379 1.068083 GCCATCGCCGATCTGAAGA 59.932 57.895 0.00 0.00 0.00 2.87
3398 5761 2.659016 CCTCTGACTTCCAGCGCA 59.341 61.111 11.47 0.00 42.62 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.