Multiple sequence alignment - TraesCS1B01G298900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G298900 chr1B 100.000 2195 0 0 1 2195 520359270 520357076 0.000000e+00 4054
1 TraesCS1B01G298900 chr1B 82.196 337 37 16 901 1232 520368822 520368504 3.590000e-68 268
2 TraesCS1B01G298900 chr1B 81.667 180 17 6 962 1140 520366482 520366318 3.800000e-28 135
3 TraesCS1B01G298900 chr1D 93.279 610 33 6 1494 2099 386895592 386894987 0.000000e+00 893
4 TraesCS1B01G298900 chr1D 89.710 379 22 12 912 1289 386896475 386896113 3.300000e-128 468
5 TraesCS1B01G298900 chr1D 80.385 520 37 26 355 827 386896990 386896489 3.490000e-88 335
6 TraesCS1B01G298900 chr1D 83.333 294 28 9 901 1194 386814174 386813902 3.620000e-63 252
7 TraesCS1B01G298900 chr1D 91.351 185 15 1 92 276 386904268 386904085 3.620000e-63 252
8 TraesCS1B01G298900 chr1D 90.789 152 14 0 1043 1194 386944165 386944014 1.030000e-48 204
9 TraesCS1B01G298900 chr1D 80.311 193 19 9 951 1136 386941256 386941076 6.360000e-26 128
10 TraesCS1B01G298900 chr1D 91.358 81 6 1 1290 1370 352563634 352563713 2.300000e-20 110
11 TraesCS1B01G298900 chr1A 81.182 829 67 38 68 827 486669034 486668226 3.140000e-163 584
12 TraesCS1B01G298900 chr1A 92.982 342 21 3 1437 1776 486667281 486666941 1.510000e-136 496
13 TraesCS1B01G298900 chr1A 89.666 329 32 1 1818 2144 486665457 486665129 3.370000e-113 418
14 TraesCS1B01G298900 chr1A 89.583 288 17 8 912 1197 486668212 486667936 9.640000e-94 353
15 TraesCS1B01G298900 chr1A 85.763 295 31 7 902 1194 486663526 486663241 3.540000e-78 302
16 TraesCS1B01G298900 chr1A 84.082 245 32 7 989 1232 486747026 486746788 1.700000e-56 230
17 TraesCS1B01G298900 chr2A 95.775 71 2 1 1289 1359 701501161 701501092 1.780000e-21 113
18 TraesCS1B01G298900 chr5B 90.476 84 4 4 1290 1372 620953575 620953655 8.290000e-20 108
19 TraesCS1B01G298900 chr5A 92.308 78 3 3 1290 1366 624117212 624117287 8.290000e-20 108
20 TraesCS1B01G298900 chr5A 90.123 81 7 1 1290 1370 697891812 697891733 1.070000e-18 104
21 TraesCS1B01G298900 chr6D 90.789 76 7 0 1290 1365 467088025 467087950 3.860000e-18 102
22 TraesCS1B01G298900 chr4A 90.000 80 7 1 1290 1369 557873053 557872975 3.860000e-18 102
23 TraesCS1B01G298900 chr2D 89.157 83 7 2 1289 1370 561881419 561881338 3.860000e-18 102
24 TraesCS1B01G298900 chr4B 90.667 75 6 1 1296 1370 36182099 36182026 4.990000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G298900 chr1B 520357076 520359270 2194 True 4054.000000 4054 100.000000 1 2195 1 chr1B.!!$R1 2194
1 TraesCS1B01G298900 chr1B 520366318 520368822 2504 True 201.500000 268 81.931500 901 1232 2 chr1B.!!$R2 331
2 TraesCS1B01G298900 chr1D 386894987 386896990 2003 True 565.333333 893 87.791333 355 2099 3 chr1D.!!$R3 1744
3 TraesCS1B01G298900 chr1A 486663241 486669034 5793 True 430.600000 584 87.835200 68 2144 5 chr1A.!!$R2 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 326 0.251787 GGTCATCAGGGGCTTTTGGT 60.252 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 4409 0.110486 ACACCTCTTTTGGCACGGAT 59.89 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.892723 CATTTAGTTTTACTGGCTATCACATCA 58.107 33.333 0.00 0.00 0.00 3.07
27 28 8.856153 TTTAGTTTTACTGGCTATCACATCAA 57.144 30.769 0.00 0.00 0.00 2.57
28 29 8.856153 TTAGTTTTACTGGCTATCACATCAAA 57.144 30.769 0.00 0.00 0.00 2.69
29 30 7.944729 AGTTTTACTGGCTATCACATCAAAT 57.055 32.000 0.00 0.00 0.00 2.32
30 31 8.353423 AGTTTTACTGGCTATCACATCAAATT 57.647 30.769 0.00 0.00 0.00 1.82
31 32 9.461312 AGTTTTACTGGCTATCACATCAAATTA 57.539 29.630 0.00 0.00 0.00 1.40
34 35 8.800370 TTACTGGCTATCACATCAAATTAACA 57.200 30.769 0.00 0.00 0.00 2.41
35 36 7.325660 ACTGGCTATCACATCAAATTAACAG 57.674 36.000 0.00 0.00 0.00 3.16
36 37 7.112122 ACTGGCTATCACATCAAATTAACAGA 58.888 34.615 0.00 0.00 0.00 3.41
37 38 7.611467 ACTGGCTATCACATCAAATTAACAGAA 59.389 33.333 0.00 0.00 0.00 3.02
38 39 8.347004 TGGCTATCACATCAAATTAACAGAAA 57.653 30.769 0.00 0.00 0.00 2.52
39 40 8.243426 TGGCTATCACATCAAATTAACAGAAAC 58.757 33.333 0.00 0.00 0.00 2.78
40 41 8.462016 GGCTATCACATCAAATTAACAGAAACT 58.538 33.333 0.00 0.00 0.00 2.66
41 42 9.282247 GCTATCACATCAAATTAACAGAAACTG 57.718 33.333 0.00 0.00 37.52 3.16
45 46 8.564574 TCACATCAAATTAACAGAAACTGTACC 58.435 33.333 4.84 0.00 44.62 3.34
46 47 8.567948 CACATCAAATTAACAGAAACTGTACCT 58.432 33.333 4.84 0.00 44.62 3.08
47 48 8.567948 ACATCAAATTAACAGAAACTGTACCTG 58.432 33.333 4.84 7.53 44.62 4.00
48 49 8.783093 CATCAAATTAACAGAAACTGTACCTGA 58.217 33.333 13.87 5.16 44.62 3.86
49 50 8.918202 TCAAATTAACAGAAACTGTACCTGAT 57.082 30.769 13.87 6.80 44.62 2.90
50 51 9.349713 TCAAATTAACAGAAACTGTACCTGATT 57.650 29.630 13.87 8.39 44.62 2.57
51 52 9.398170 CAAATTAACAGAAACTGTACCTGATTG 57.602 33.333 13.87 3.73 44.62 2.67
52 53 8.918202 AATTAACAGAAACTGTACCTGATTGA 57.082 30.769 13.87 4.90 44.62 2.57
53 54 8.918202 ATTAACAGAAACTGTACCTGATTGAA 57.082 30.769 13.87 5.18 44.62 2.69
54 55 8.740123 TTAACAGAAACTGTACCTGATTGAAA 57.260 30.769 13.87 1.89 44.62 2.69
55 56 6.867662 ACAGAAACTGTACCTGATTGAAAG 57.132 37.500 13.87 0.00 43.46 2.62
56 57 5.765182 ACAGAAACTGTACCTGATTGAAAGG 59.235 40.000 13.87 0.00 43.46 3.11
57 58 6.634955 ACAGAAACTGTACCTGATTGAAAGGT 60.635 38.462 13.87 0.14 43.46 3.50
58 59 6.263168 CAGAAACTGTACCTGATTGAAAGGTT 59.737 38.462 0.00 0.00 46.14 3.50
59 60 6.833933 AGAAACTGTACCTGATTGAAAGGTTT 59.166 34.615 0.00 0.00 46.14 3.27
60 61 7.342026 AGAAACTGTACCTGATTGAAAGGTTTT 59.658 33.333 0.00 0.00 46.14 2.43
61 62 8.528044 AAACTGTACCTGATTGAAAGGTTTTA 57.472 30.769 0.00 0.00 46.14 1.52
62 63 8.706322 AACTGTACCTGATTGAAAGGTTTTAT 57.294 30.769 0.00 0.00 46.14 1.40
63 64 8.336801 ACTGTACCTGATTGAAAGGTTTTATC 57.663 34.615 0.00 0.00 46.14 1.75
64 65 7.942341 ACTGTACCTGATTGAAAGGTTTTATCA 59.058 33.333 0.00 0.00 46.14 2.15
65 66 8.698973 TGTACCTGATTGAAAGGTTTTATCAA 57.301 30.769 0.00 0.00 46.14 2.57
66 67 8.792633 TGTACCTGATTGAAAGGTTTTATCAAG 58.207 33.333 0.00 0.00 46.14 3.02
158 159 6.151648 CAGTCAGAAGCATTTTCCAGGATTTA 59.848 38.462 0.00 0.00 0.00 1.40
162 163 4.725790 AGCATTTTCCAGGATTTACAGC 57.274 40.909 0.00 0.00 0.00 4.40
178 179 1.012486 CAGCGTACGTGTTCTTCCCC 61.012 60.000 17.90 0.00 0.00 4.81
182 185 1.670967 CGTACGTGTTCTTCCCCCTTC 60.671 57.143 7.22 0.00 0.00 3.46
190 193 5.506815 CGTGTTCTTCCCCCTTCTTTTTAAC 60.507 44.000 0.00 0.00 0.00 2.01
197 200 7.840210 TCTTCCCCCTTCTTTTTAACTGTTTTA 59.160 33.333 0.00 0.00 0.00 1.52
202 205 9.476202 CCCCTTCTTTTTAACTGTTTTATTCAG 57.524 33.333 0.00 0.00 38.68 3.02
237 240 8.299570 ACAAATCTTGTATTTGTCACATCTTCC 58.700 33.333 9.67 0.00 45.82 3.46
238 241 7.396540 AATCTTGTATTTGTCACATCTTCCC 57.603 36.000 0.00 0.00 0.00 3.97
276 279 0.755327 ACAGCCCGTGCCTTTCTTTT 60.755 50.000 0.00 0.00 38.69 2.27
277 280 1.243902 CAGCCCGTGCCTTTCTTTTA 58.756 50.000 0.00 0.00 38.69 1.52
278 281 1.200020 CAGCCCGTGCCTTTCTTTTAG 59.800 52.381 0.00 0.00 38.69 1.85
284 287 5.676331 GCCCGTGCCTTTCTTTTAGAATTAG 60.676 44.000 0.00 0.00 33.67 1.73
285 288 5.414765 CCCGTGCCTTTCTTTTAGAATTAGT 59.585 40.000 0.00 0.00 33.67 2.24
286 289 6.314784 CCGTGCCTTTCTTTTAGAATTAGTG 58.685 40.000 0.00 0.00 33.67 2.74
287 290 6.072673 CCGTGCCTTTCTTTTAGAATTAGTGT 60.073 38.462 0.00 0.00 33.67 3.55
288 291 7.118680 CCGTGCCTTTCTTTTAGAATTAGTGTA 59.881 37.037 0.00 0.00 33.67 2.90
302 308 6.375455 AGAATTAGTGTATTTTCCACTGCTGG 59.625 38.462 3.44 0.00 42.85 4.85
320 326 0.251787 GGTCATCAGGGGCTTTTGGT 60.252 55.000 0.00 0.00 0.00 3.67
321 327 1.005450 GGTCATCAGGGGCTTTTGGTA 59.995 52.381 0.00 0.00 0.00 3.25
326 332 1.284785 TCAGGGGCTTTTGGTATCTGG 59.715 52.381 0.00 0.00 0.00 3.86
328 334 2.000048 AGGGGCTTTTGGTATCTGGAA 59.000 47.619 0.00 0.00 0.00 3.53
329 335 2.381961 AGGGGCTTTTGGTATCTGGAAA 59.618 45.455 0.00 0.00 0.00 3.13
349 355 0.679321 TGTGGCAGCAAGTTGTGACA 60.679 50.000 9.17 9.17 0.00 3.58
373 396 5.424895 ACCTGAGATTCTTCAAGCATCTACT 59.575 40.000 0.00 0.00 28.43 2.57
374 397 5.984926 CCTGAGATTCTTCAAGCATCTACTC 59.015 44.000 0.00 0.00 28.43 2.59
376 399 5.660417 TGAGATTCTTCAAGCATCTACTCCT 59.340 40.000 0.00 0.00 28.43 3.69
377 400 6.160576 AGATTCTTCAAGCATCTACTCCTC 57.839 41.667 0.00 0.00 26.44 3.71
451 482 7.759607 AGCCTGATATAAACCCATTTATCAGT 58.240 34.615 14.37 0.00 38.31 3.41
469 516 2.005188 GTGAAAAGCGACTTGTCACG 57.995 50.000 19.91 0.00 45.06 4.35
472 519 1.192534 GAAAAGCGACTTGTCACGAGG 59.807 52.381 0.00 0.00 28.80 4.63
478 525 2.254459 CGACTTGTCACGAGGAAGATG 58.746 52.381 0.00 0.00 0.00 2.90
483 530 3.961480 TGTCACGAGGAAGATGAACAT 57.039 42.857 0.00 0.00 0.00 2.71
484 531 3.849911 TGTCACGAGGAAGATGAACATC 58.150 45.455 6.68 6.68 38.09 3.06
494 541 5.012893 GGAAGATGAACATCCAACTTTCCT 58.987 41.667 17.62 0.00 38.58 3.36
495 542 5.478332 GGAAGATGAACATCCAACTTTCCTT 59.522 40.000 17.62 3.91 38.58 3.36
496 543 5.972107 AGATGAACATCCAACTTTCCTTG 57.028 39.130 10.63 0.00 38.58 3.61
497 544 5.388654 AGATGAACATCCAACTTTCCTTGT 58.611 37.500 10.63 0.00 38.58 3.16
498 545 6.542821 AGATGAACATCCAACTTTCCTTGTA 58.457 36.000 10.63 0.00 38.58 2.41
499 546 6.431234 AGATGAACATCCAACTTTCCTTGTAC 59.569 38.462 10.63 0.00 38.58 2.90
500 547 5.441500 TGAACATCCAACTTTCCTTGTACA 58.558 37.500 0.00 0.00 0.00 2.90
501 548 5.298276 TGAACATCCAACTTTCCTTGTACAC 59.702 40.000 0.00 0.00 0.00 2.90
502 549 5.048846 ACATCCAACTTTCCTTGTACACT 57.951 39.130 0.00 0.00 0.00 3.55
503 550 5.445964 ACATCCAACTTTCCTTGTACACTT 58.554 37.500 0.00 0.00 0.00 3.16
504 551 5.299279 ACATCCAACTTTCCTTGTACACTTG 59.701 40.000 0.00 0.00 0.00 3.16
505 552 4.850680 TCCAACTTTCCTTGTACACTTGT 58.149 39.130 0.00 0.00 0.00 3.16
506 553 5.991861 TCCAACTTTCCTTGTACACTTGTA 58.008 37.500 0.00 0.00 0.00 2.41
507 554 6.597562 TCCAACTTTCCTTGTACACTTGTAT 58.402 36.000 0.00 0.00 32.54 2.29
508 555 7.057894 TCCAACTTTCCTTGTACACTTGTATT 58.942 34.615 0.00 0.00 32.54 1.89
509 556 7.558444 TCCAACTTTCCTTGTACACTTGTATTT 59.442 33.333 0.00 0.00 32.54 1.40
510 557 8.194769 CCAACTTTCCTTGTACACTTGTATTTT 58.805 33.333 0.00 0.00 32.54 1.82
511 558 9.233232 CAACTTTCCTTGTACACTTGTATTTTC 57.767 33.333 0.00 0.00 32.54 2.29
555 614 3.440127 TCCCCAGAAAATTAGGGCTTTG 58.560 45.455 0.00 0.00 41.42 2.77
577 637 2.563179 TCTGAAGTGCTAGTTGACCCTC 59.437 50.000 0.00 0.00 0.00 4.30
611 672 3.941483 GTGTGCTAGCAAGTTCCACATAT 59.059 43.478 21.29 0.00 38.50 1.78
612 673 5.116180 GTGTGCTAGCAAGTTCCACATATA 58.884 41.667 21.29 0.00 38.50 0.86
613 674 5.760253 GTGTGCTAGCAAGTTCCACATATAT 59.240 40.000 21.29 0.00 38.50 0.86
614 675 6.929049 GTGTGCTAGCAAGTTCCACATATATA 59.071 38.462 21.29 0.00 38.50 0.86
661 724 8.416329 CCATGTAAATATCTTGGAAAGGAAAGG 58.584 37.037 0.00 0.00 46.24 3.11
662 725 9.189156 CATGTAAATATCTTGGAAAGGAAAGGA 57.811 33.333 0.00 0.00 46.24 3.36
663 726 9.768215 ATGTAAATATCTTGGAAAGGAAAGGAA 57.232 29.630 0.00 0.00 46.24 3.36
664 727 9.594936 TGTAAATATCTTGGAAAGGAAAGGAAA 57.405 29.630 0.00 0.00 46.24 3.13
666 729 6.782082 ATATCTTGGAAAGGAAAGGAAAGC 57.218 37.500 0.00 0.00 46.24 3.51
667 730 4.184649 TCTTGGAAAGGAAAGGAAAGCT 57.815 40.909 0.00 0.00 46.24 3.74
684 747 2.393271 GCTCTGTGCTATGGTCTTGT 57.607 50.000 0.00 0.00 38.95 3.16
689 752 5.222079 TCTGTGCTATGGTCTTGTTGTAA 57.778 39.130 0.00 0.00 0.00 2.41
690 753 5.804639 TCTGTGCTATGGTCTTGTTGTAAT 58.195 37.500 0.00 0.00 0.00 1.89
691 754 6.237901 TCTGTGCTATGGTCTTGTTGTAATT 58.762 36.000 0.00 0.00 0.00 1.40
700 763 4.273969 GGTCTTGTTGTAATTTGGTCGACA 59.726 41.667 18.91 0.27 0.00 4.35
732 795 9.469807 TTTGTTCACTTTATCGCAAATATGTTT 57.530 25.926 0.00 0.00 0.00 2.83
734 797 8.293157 TGTTCACTTTATCGCAAATATGTTTCA 58.707 29.630 0.00 0.00 0.00 2.69
735 798 8.788813 GTTCACTTTATCGCAAATATGTTTCAG 58.211 33.333 0.00 0.00 0.00 3.02
736 799 8.262715 TCACTTTATCGCAAATATGTTTCAGA 57.737 30.769 0.00 0.00 0.00 3.27
737 800 8.892723 TCACTTTATCGCAAATATGTTTCAGAT 58.107 29.630 6.80 6.80 0.00 2.90
738 801 8.950961 CACTTTATCGCAAATATGTTTCAGATG 58.049 33.333 10.14 0.74 0.00 2.90
739 802 8.131100 ACTTTATCGCAAATATGTTTCAGATGG 58.869 33.333 10.14 5.35 0.00 3.51
740 803 4.898829 TCGCAAATATGTTTCAGATGGG 57.101 40.909 0.00 0.00 0.00 4.00
741 804 4.522114 TCGCAAATATGTTTCAGATGGGA 58.478 39.130 0.00 0.00 0.00 4.37
742 805 4.576053 TCGCAAATATGTTTCAGATGGGAG 59.424 41.667 0.00 0.00 0.00 4.30
743 806 4.576053 CGCAAATATGTTTCAGATGGGAGA 59.424 41.667 0.00 0.00 0.00 3.71
744 807 5.066375 CGCAAATATGTTTCAGATGGGAGAA 59.934 40.000 0.00 0.00 0.00 2.87
745 808 6.404623 CGCAAATATGTTTCAGATGGGAGAAA 60.405 38.462 0.00 0.00 0.00 2.52
760 843 2.227626 GGAGAAAGGAGAAAGTGCAAGC 59.772 50.000 0.00 0.00 0.00 4.01
776 859 4.326278 GTGCAAGCATCTGAATCATTTGTG 59.674 41.667 0.00 0.00 0.00 3.33
800 883 3.444916 CATGGCATTTCATTCTGCAGAC 58.555 45.455 18.03 1.58 40.18 3.51
802 885 1.470098 GGCATTTCATTCTGCAGACGT 59.530 47.619 18.03 5.32 40.18 4.34
824 907 2.248280 TAAGAAGCGAACAAGGTGCA 57.752 45.000 0.00 0.00 0.00 4.57
825 908 0.663153 AAGAAGCGAACAAGGTGCAC 59.337 50.000 8.80 8.80 0.00 4.57
826 909 1.082756 GAAGCGAACAAGGTGCACG 60.083 57.895 11.45 0.00 0.00 5.34
827 910 1.772063 GAAGCGAACAAGGTGCACGT 61.772 55.000 11.45 8.83 0.00 4.49
828 911 2.047151 AAGCGAACAAGGTGCACGTG 62.047 55.000 13.63 12.28 34.52 4.49
829 912 2.819552 GCGAACAAGGTGCACGTGT 61.820 57.895 18.38 15.39 43.82 4.49
830 913 1.492319 GCGAACAAGGTGCACGTGTA 61.492 55.000 21.10 10.46 41.02 2.90
831 914 0.506932 CGAACAAGGTGCACGTGTAG 59.493 55.000 21.10 15.46 41.02 2.74
832 915 0.865769 GAACAAGGTGCACGTGTAGG 59.134 55.000 21.10 10.94 41.02 3.18
833 916 1.164041 AACAAGGTGCACGTGTAGGC 61.164 55.000 21.10 2.58 41.02 3.93
834 917 2.032071 AAGGTGCACGTGTAGGCC 59.968 61.111 18.38 11.26 0.00 5.19
835 918 2.813726 AAGGTGCACGTGTAGGCCA 61.814 57.895 18.38 2.76 0.00 5.36
836 919 2.281208 GGTGCACGTGTAGGCCAA 60.281 61.111 18.38 0.00 0.00 4.52
837 920 2.613506 GGTGCACGTGTAGGCCAAC 61.614 63.158 18.38 4.82 0.00 3.77
838 921 1.597027 GTGCACGTGTAGGCCAACT 60.597 57.895 18.38 0.00 0.00 3.16
839 922 1.147376 TGCACGTGTAGGCCAACTT 59.853 52.632 18.38 0.00 0.00 2.66
840 923 1.163420 TGCACGTGTAGGCCAACTTG 61.163 55.000 18.38 5.42 0.00 3.16
841 924 1.164041 GCACGTGTAGGCCAACTTGT 61.164 55.000 18.38 0.00 0.00 3.16
842 925 0.586319 CACGTGTAGGCCAACTTGTG 59.414 55.000 7.58 4.08 0.00 3.33
843 926 1.164041 ACGTGTAGGCCAACTTGTGC 61.164 55.000 5.01 0.00 0.00 4.57
844 927 1.163420 CGTGTAGGCCAACTTGTGCA 61.163 55.000 5.01 0.00 0.00 4.57
845 928 1.028905 GTGTAGGCCAACTTGTGCAA 58.971 50.000 5.01 0.00 0.00 4.08
846 929 1.001378 GTGTAGGCCAACTTGTGCAAG 60.001 52.381 5.01 10.09 43.79 4.01
847 930 0.598065 GTAGGCCAACTTGTGCAAGG 59.402 55.000 5.01 1.30 42.53 3.61
848 931 1.178534 TAGGCCAACTTGTGCAAGGC 61.179 55.000 5.01 10.20 42.53 4.35
849 932 2.795110 GGCCAACTTGTGCAAGGCA 61.795 57.895 15.31 0.00 42.53 4.75
850 933 1.300388 GCCAACTTGTGCAAGGCAG 60.300 57.895 15.31 5.28 40.08 4.85
851 934 1.737355 GCCAACTTGTGCAAGGCAGA 61.737 55.000 15.31 0.00 40.08 4.26
852 935 0.313043 CCAACTTGTGCAAGGCAGAG 59.687 55.000 15.31 0.00 40.08 3.35
853 936 0.313043 CAACTTGTGCAAGGCAGAGG 59.687 55.000 15.31 0.00 40.08 3.69
854 937 1.458639 AACTTGTGCAAGGCAGAGGC 61.459 55.000 15.31 0.00 40.08 4.70
855 938 1.900016 CTTGTGCAAGGCAGAGGCA 60.900 57.895 4.13 0.00 40.08 4.75
856 939 1.455402 TTGTGCAAGGCAGAGGCAA 60.455 52.632 0.00 0.00 40.08 4.52
857 940 1.737355 TTGTGCAAGGCAGAGGCAAC 61.737 55.000 0.00 0.00 40.08 4.17
858 941 2.195411 TGCAAGGCAGAGGCAACA 59.805 55.556 0.00 0.00 43.71 3.33
859 942 1.228644 TGCAAGGCAGAGGCAACAT 60.229 52.632 0.00 0.00 43.71 2.71
860 943 1.214589 GCAAGGCAGAGGCAACATG 59.785 57.895 0.00 0.00 43.71 3.21
881 964 2.096417 GCGTACGCCTATAAATGCCTTG 60.096 50.000 29.51 0.00 34.56 3.61
882 965 3.128349 CGTACGCCTATAAATGCCTTGT 58.872 45.455 0.52 0.00 0.00 3.16
883 966 3.059868 CGTACGCCTATAAATGCCTTGTG 60.060 47.826 0.52 0.00 0.00 3.33
884 967 3.275617 ACGCCTATAAATGCCTTGTGA 57.724 42.857 0.00 0.00 0.00 3.58
885 968 2.943033 ACGCCTATAAATGCCTTGTGAC 59.057 45.455 0.00 0.00 0.00 3.67
886 969 2.942376 CGCCTATAAATGCCTTGTGACA 59.058 45.455 0.00 0.00 0.00 3.58
887 970 3.242739 CGCCTATAAATGCCTTGTGACAC 60.243 47.826 0.00 0.00 0.00 3.67
888 971 3.066760 GCCTATAAATGCCTTGTGACACC 59.933 47.826 2.45 0.00 0.00 4.16
889 972 3.632145 CCTATAAATGCCTTGTGACACCC 59.368 47.826 2.45 0.00 0.00 4.61
890 973 1.529226 TAAATGCCTTGTGACACCCG 58.471 50.000 2.45 0.00 0.00 5.28
891 974 1.805428 AAATGCCTTGTGACACCCGC 61.805 55.000 2.45 2.52 0.00 6.13
892 975 2.697147 AATGCCTTGTGACACCCGCT 62.697 55.000 2.45 0.00 0.00 5.52
893 976 3.050275 GCCTTGTGACACCCGCTC 61.050 66.667 2.45 0.00 0.00 5.03
894 977 2.425592 CCTTGTGACACCCGCTCA 59.574 61.111 2.45 0.00 0.00 4.26
895 978 1.003355 CCTTGTGACACCCGCTCAT 60.003 57.895 2.45 0.00 0.00 2.90
896 979 1.021390 CCTTGTGACACCCGCTCATC 61.021 60.000 2.45 0.00 0.00 2.92
897 980 0.320683 CTTGTGACACCCGCTCATCA 60.321 55.000 2.45 0.00 0.00 3.07
898 981 0.602638 TTGTGACACCCGCTCATCAC 60.603 55.000 2.45 0.00 41.51 3.06
899 982 1.005037 GTGACACCCGCTCATCACA 60.005 57.895 0.00 0.00 40.95 3.58
906 989 0.395686 CCCGCTCATCACATCCTCAT 59.604 55.000 0.00 0.00 0.00 2.90
939 1022 0.389948 GAGCACTTGGACTACCCACG 60.390 60.000 0.00 0.00 46.62 4.94
948 1031 2.237643 TGGACTACCCACGCAATACAAT 59.762 45.455 0.00 0.00 40.82 2.71
957 1044 3.843541 CCACGCAATACAATTACACAACG 59.156 43.478 0.00 0.00 0.00 4.10
987 1074 1.481772 CAGAGAGGAGGAGCAAGAAGG 59.518 57.143 0.00 0.00 0.00 3.46
1022 1109 3.603532 TGGAGTACGAGTACCAGTACAG 58.396 50.000 22.47 6.36 43.98 2.74
1024 1111 2.005451 AGTACGAGTACCAGTACAGCG 58.995 52.381 22.47 16.50 43.98 5.18
1187 1274 2.560105 GCAACAGCTTCAGAAGGGAAAT 59.440 45.455 12.30 0.00 0.00 2.17
1233 1812 3.326588 GCATGGTAGATGGGTATGGTGTA 59.673 47.826 0.00 0.00 0.00 2.90
1243 1822 3.006940 GGGTATGGTGTATGTGTGTGTG 58.993 50.000 0.00 0.00 0.00 3.82
1244 1823 3.006940 GGTATGGTGTATGTGTGTGTGG 58.993 50.000 0.00 0.00 0.00 4.17
1246 1825 0.109532 TGGTGTATGTGTGTGTGGGG 59.890 55.000 0.00 0.00 0.00 4.96
1247 1826 1.241315 GGTGTATGTGTGTGTGGGGC 61.241 60.000 0.00 0.00 0.00 5.80
1248 1827 0.536233 GTGTATGTGTGTGTGGGGCA 60.536 55.000 0.00 0.00 0.00 5.36
1249 1828 0.183731 TGTATGTGTGTGTGGGGCAA 59.816 50.000 0.00 0.00 0.00 4.52
1250 1829 0.881118 GTATGTGTGTGTGGGGCAAG 59.119 55.000 0.00 0.00 0.00 4.01
1251 1830 0.251121 TATGTGTGTGTGGGGCAAGG 60.251 55.000 0.00 0.00 0.00 3.61
1252 1831 2.123897 GTGTGTGTGGGGCAAGGT 60.124 61.111 0.00 0.00 0.00 3.50
1253 1832 2.123939 TGTGTGTGGGGCAAGGTG 60.124 61.111 0.00 0.00 0.00 4.00
1254 1833 3.605664 GTGTGTGGGGCAAGGTGC 61.606 66.667 0.00 0.00 44.08 5.01
1256 1867 3.297620 GTGTGGGGCAAGGTGCTG 61.298 66.667 0.00 0.00 44.28 4.41
1269 1880 3.845781 AGGTGCTGTTTTCTTCTGAGA 57.154 42.857 0.00 0.00 0.00 3.27
1279 1890 7.649306 GCTGTTTTCTTCTGAGAATTTTAGCAA 59.351 33.333 0.00 0.00 41.35 3.91
1289 1900 8.200792 TCTGAGAATTTTAGCAAGATAGTCTCC 58.799 37.037 0.00 0.00 0.00 3.71
1290 1901 7.851228 TGAGAATTTTAGCAAGATAGTCTCCA 58.149 34.615 0.00 0.00 0.00 3.86
1291 1902 7.984050 TGAGAATTTTAGCAAGATAGTCTCCAG 59.016 37.037 0.00 0.00 0.00 3.86
1292 1903 7.856415 AGAATTTTAGCAAGATAGTCTCCAGT 58.144 34.615 0.00 0.00 0.00 4.00
1293 1904 7.768120 AGAATTTTAGCAAGATAGTCTCCAGTG 59.232 37.037 0.00 0.00 0.00 3.66
1294 1905 5.344743 TTTAGCAAGATAGTCTCCAGTGG 57.655 43.478 1.40 1.40 0.00 4.00
1295 1906 1.484240 AGCAAGATAGTCTCCAGTGGC 59.516 52.381 3.51 0.00 0.00 5.01
1296 1907 1.804372 GCAAGATAGTCTCCAGTGGCG 60.804 57.143 3.51 0.00 0.00 5.69
1297 1908 1.115467 AAGATAGTCTCCAGTGGCGG 58.885 55.000 3.51 0.00 0.00 6.13
1298 1909 0.259065 AGATAGTCTCCAGTGGCGGA 59.741 55.000 3.51 2.19 0.00 5.54
1316 1927 4.012319 CGGAGCTTGATGAAGATTGTTG 57.988 45.455 0.00 0.00 0.00 3.33
1317 1928 3.686241 CGGAGCTTGATGAAGATTGTTGA 59.314 43.478 0.00 0.00 0.00 3.18
1318 1929 4.201792 CGGAGCTTGATGAAGATTGTTGAG 60.202 45.833 0.00 0.00 0.00 3.02
1319 1930 4.096081 GGAGCTTGATGAAGATTGTTGAGG 59.904 45.833 0.00 0.00 0.00 3.86
1320 1931 4.015084 AGCTTGATGAAGATTGTTGAGGG 58.985 43.478 0.00 0.00 0.00 4.30
1321 1932 3.129988 GCTTGATGAAGATTGTTGAGGGG 59.870 47.826 0.00 0.00 0.00 4.79
1322 1933 3.370840 TGATGAAGATTGTTGAGGGGG 57.629 47.619 0.00 0.00 0.00 5.40
1323 1934 2.027385 GATGAAGATTGTTGAGGGGGC 58.973 52.381 0.00 0.00 0.00 5.80
1324 1935 1.075601 TGAAGATTGTTGAGGGGGCT 58.924 50.000 0.00 0.00 0.00 5.19
1325 1936 2.274542 TGAAGATTGTTGAGGGGGCTA 58.725 47.619 0.00 0.00 0.00 3.93
1326 1937 2.647299 TGAAGATTGTTGAGGGGGCTAA 59.353 45.455 0.00 0.00 0.00 3.09
1327 1938 3.269381 TGAAGATTGTTGAGGGGGCTAAT 59.731 43.478 0.00 0.00 0.00 1.73
1328 1939 3.584733 AGATTGTTGAGGGGGCTAATC 57.415 47.619 0.00 0.00 0.00 1.75
1329 1940 3.126453 AGATTGTTGAGGGGGCTAATCT 58.874 45.455 0.00 0.00 31.92 2.40
1330 1941 2.806945 TTGTTGAGGGGGCTAATCTG 57.193 50.000 0.00 0.00 0.00 2.90
1331 1942 1.965414 TGTTGAGGGGGCTAATCTGA 58.035 50.000 0.00 0.00 0.00 3.27
1332 1943 1.839994 TGTTGAGGGGGCTAATCTGAG 59.160 52.381 0.00 0.00 0.00 3.35
1333 1944 1.840635 GTTGAGGGGGCTAATCTGAGT 59.159 52.381 0.00 0.00 0.00 3.41
1334 1945 2.239907 GTTGAGGGGGCTAATCTGAGTT 59.760 50.000 0.00 0.00 0.00 3.01
1335 1946 1.839994 TGAGGGGGCTAATCTGAGTTG 59.160 52.381 0.00 0.00 0.00 3.16
1336 1947 2.119495 GAGGGGGCTAATCTGAGTTGA 58.881 52.381 0.00 0.00 0.00 3.18
1337 1948 2.103941 GAGGGGGCTAATCTGAGTTGAG 59.896 54.545 0.00 0.00 0.00 3.02
1338 1949 2.119495 GGGGGCTAATCTGAGTTGAGA 58.881 52.381 0.00 0.00 0.00 3.27
1339 1950 2.103941 GGGGGCTAATCTGAGTTGAGAG 59.896 54.545 0.00 0.00 0.00 3.20
1340 1951 2.103941 GGGGCTAATCTGAGTTGAGAGG 59.896 54.545 0.00 0.00 0.00 3.69
1341 1952 2.103941 GGGCTAATCTGAGTTGAGAGGG 59.896 54.545 0.00 0.00 0.00 4.30
1342 1953 2.769095 GGCTAATCTGAGTTGAGAGGGT 59.231 50.000 0.00 0.00 0.00 4.34
1343 1954 3.431486 GGCTAATCTGAGTTGAGAGGGTG 60.431 52.174 0.00 0.00 0.00 4.61
1344 1955 3.449018 GCTAATCTGAGTTGAGAGGGTGA 59.551 47.826 0.00 0.00 0.00 4.02
1345 1956 4.081420 GCTAATCTGAGTTGAGAGGGTGAA 60.081 45.833 0.00 0.00 0.00 3.18
1346 1957 4.550076 AATCTGAGTTGAGAGGGTGAAG 57.450 45.455 0.00 0.00 0.00 3.02
1347 1958 3.244887 TCTGAGTTGAGAGGGTGAAGA 57.755 47.619 0.00 0.00 0.00 2.87
1348 1959 3.576861 TCTGAGTTGAGAGGGTGAAGAA 58.423 45.455 0.00 0.00 0.00 2.52
1349 1960 3.576118 TCTGAGTTGAGAGGGTGAAGAAG 59.424 47.826 0.00 0.00 0.00 2.85
1350 1961 3.576118 CTGAGTTGAGAGGGTGAAGAAGA 59.424 47.826 0.00 0.00 0.00 2.87
1351 1962 4.163427 TGAGTTGAGAGGGTGAAGAAGAT 58.837 43.478 0.00 0.00 0.00 2.40
1352 1963 5.333581 TGAGTTGAGAGGGTGAAGAAGATA 58.666 41.667 0.00 0.00 0.00 1.98
1353 1964 5.780282 TGAGTTGAGAGGGTGAAGAAGATAA 59.220 40.000 0.00 0.00 0.00 1.75
1354 1965 6.071108 TGAGTTGAGAGGGTGAAGAAGATAAG 60.071 42.308 0.00 0.00 0.00 1.73
1355 1966 5.782845 AGTTGAGAGGGTGAAGAAGATAAGT 59.217 40.000 0.00 0.00 0.00 2.24
1356 1967 6.271159 AGTTGAGAGGGTGAAGAAGATAAGTT 59.729 38.462 0.00 0.00 0.00 2.66
1357 1968 7.455008 AGTTGAGAGGGTGAAGAAGATAAGTTA 59.545 37.037 0.00 0.00 0.00 2.24
1358 1969 7.979786 TGAGAGGGTGAAGAAGATAAGTTAT 57.020 36.000 0.00 0.00 0.00 1.89
1359 1970 9.488762 TTGAGAGGGTGAAGAAGATAAGTTATA 57.511 33.333 0.00 0.00 0.00 0.98
1360 1971 9.661954 TGAGAGGGTGAAGAAGATAAGTTATAT 57.338 33.333 0.00 0.00 0.00 0.86
1372 1983 8.934507 AAGATAAGTTATATATGAAGCTCCGC 57.065 34.615 0.00 0.00 0.00 5.54
1373 1984 7.493367 AGATAAGTTATATATGAAGCTCCGCC 58.507 38.462 0.00 0.00 0.00 6.13
1374 1985 5.483685 AAGTTATATATGAAGCTCCGCCA 57.516 39.130 0.00 0.00 0.00 5.69
1375 1986 4.822026 AGTTATATATGAAGCTCCGCCAC 58.178 43.478 0.00 0.00 0.00 5.01
1376 1987 4.528596 AGTTATATATGAAGCTCCGCCACT 59.471 41.667 0.00 0.00 0.00 4.00
1377 1988 2.820059 TATATGAAGCTCCGCCACTG 57.180 50.000 0.00 0.00 0.00 3.66
1378 1989 1.123077 ATATGAAGCTCCGCCACTGA 58.877 50.000 0.00 0.00 0.00 3.41
1379 1990 1.123077 TATGAAGCTCCGCCACTGAT 58.877 50.000 0.00 0.00 0.00 2.90
1380 1991 1.123077 ATGAAGCTCCGCCACTGATA 58.877 50.000 0.00 0.00 0.00 2.15
1381 1992 0.901827 TGAAGCTCCGCCACTGATAA 59.098 50.000 0.00 0.00 0.00 1.75
1382 1993 1.291132 GAAGCTCCGCCACTGATAAC 58.709 55.000 0.00 0.00 0.00 1.89
1383 1994 0.107654 AAGCTCCGCCACTGATAACC 60.108 55.000 0.00 0.00 0.00 2.85
1384 1995 0.978146 AGCTCCGCCACTGATAACCT 60.978 55.000 0.00 0.00 0.00 3.50
1385 1996 0.530870 GCTCCGCCACTGATAACCTC 60.531 60.000 0.00 0.00 0.00 3.85
1390 2001 1.804372 CGCCACTGATAACCTCTCTGC 60.804 57.143 0.00 0.00 0.00 4.26
1397 2008 5.289675 CACTGATAACCTCTCTGCTTTTACG 59.710 44.000 0.00 0.00 0.00 3.18
1425 2042 5.542635 AGAACCTGTTTGATCCACTGTACTA 59.457 40.000 0.00 0.00 0.00 1.82
1457 2129 8.434392 TGGGGTCTAATGTTATATACAAACCTC 58.566 37.037 0.00 0.00 40.89 3.85
1479 2151 1.171308 GTGTGCATGACATCAAGGCT 58.829 50.000 0.00 0.00 36.78 4.58
1595 2681 9.261180 CAATTACCTAATCTCTCGCATTCTTTA 57.739 33.333 0.00 0.00 0.00 1.85
1700 2787 4.163649 TGTTTTTGAAAATAAACCCGGGGT 59.836 37.500 27.92 18.49 37.65 4.95
1790 2877 1.202746 GCAAGCCCATGGGTTTTCAAA 60.203 47.619 28.79 0.00 40.84 2.69
1792 2879 3.140623 CAAGCCCATGGGTTTTCAAAAG 58.859 45.455 28.79 13.68 40.84 2.27
1876 4405 9.865321 CCAATCAAAGAAGATGACATTTGTTAT 57.135 29.630 0.00 0.00 34.88 1.89
1880 4409 6.839124 AAGAAGATGACATTTGTTATGCCA 57.161 33.333 0.00 0.00 0.00 4.92
1886 4415 3.128415 TGACATTTGTTATGCCATCCGTG 59.872 43.478 0.00 0.00 0.00 4.94
1893 4422 1.102154 TATGCCATCCGTGCCAAAAG 58.898 50.000 0.00 0.00 0.00 2.27
1901 4430 0.817634 CCGTGCCAAAAGAGGTGTCA 60.818 55.000 0.00 0.00 0.00 3.58
1923 4452 9.743057 TGTCATGGTTTTAGTTCACTTATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
1994 4926 6.485648 GCTCAACATTAACGGATTAGGGTAAT 59.514 38.462 0.00 0.00 0.00 1.89
1995 4927 7.658575 GCTCAACATTAACGGATTAGGGTAATA 59.341 37.037 0.00 0.00 0.00 0.98
2101 5033 6.259167 GCGAGGTTTTGGTTTCCTTTAAAAAT 59.741 34.615 0.00 0.00 0.00 1.82
2129 5061 6.877668 AAACAAGGGGGAAAAGTAGAAAAA 57.122 33.333 0.00 0.00 0.00 1.94
2169 5991 9.619316 TTCACAATACTTGGTTTTTCAATATCG 57.381 29.630 0.00 0.00 34.12 2.92
2171 5993 9.277565 CACAATACTTGGTTTTTCAATATCGAG 57.722 33.333 0.00 0.00 34.12 4.04
2172 5994 8.458843 ACAATACTTGGTTTTTCAATATCGAGG 58.541 33.333 0.00 0.00 34.12 4.63
2173 5995 8.458843 CAATACTTGGTTTTTCAATATCGAGGT 58.541 33.333 0.00 0.00 0.00 3.85
2174 5996 6.254281 ACTTGGTTTTTCAATATCGAGGTG 57.746 37.500 0.00 0.00 0.00 4.00
2175 5997 4.695217 TGGTTTTTCAATATCGAGGTGC 57.305 40.909 0.00 0.00 0.00 5.01
2178 6000 5.095490 GGTTTTTCAATATCGAGGTGCTTG 58.905 41.667 0.00 0.00 0.00 4.01
2180 6002 5.801350 TTTTCAATATCGAGGTGCTTGAG 57.199 39.130 0.00 0.00 0.00 3.02
2182 6004 3.785486 TCAATATCGAGGTGCTTGAGTG 58.215 45.455 0.00 0.00 0.00 3.51
2184 6006 2.654749 TATCGAGGTGCTTGAGTGTG 57.345 50.000 0.00 0.00 0.00 3.82
2186 6008 0.249447 TCGAGGTGCTTGAGTGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
2187 6009 1.835483 CGAGGTGCTTGAGTGTGTGC 61.835 60.000 0.00 0.00 0.00 4.57
2189 6011 0.816825 AGGTGCTTGAGTGTGTGCAG 60.817 55.000 0.00 0.00 36.03 4.41
2190 6012 1.650912 GTGCTTGAGTGTGTGCAGG 59.349 57.895 0.00 0.00 36.03 4.85
2191 6013 1.097547 GTGCTTGAGTGTGTGCAGGT 61.098 55.000 0.00 0.00 36.03 4.00
2192 6014 1.096967 TGCTTGAGTGTGTGCAGGTG 61.097 55.000 0.00 0.00 0.00 4.00
2193 6015 1.650912 CTTGAGTGTGTGCAGGTGC 59.349 57.895 0.00 0.00 42.50 5.01
2194 6016 1.789078 CTTGAGTGTGTGCAGGTGCC 61.789 60.000 0.00 0.00 41.18 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.892723 TGATGTGATAGCCAGTAAAACTAAATG 58.107 33.333 0.00 0.00 0.00 2.32
1 2 9.461312 TTGATGTGATAGCCAGTAAAACTAAAT 57.539 29.630 0.00 0.00 0.00 1.40
2 3 8.856153 TTGATGTGATAGCCAGTAAAACTAAA 57.144 30.769 0.00 0.00 0.00 1.85
3 4 8.856153 TTTGATGTGATAGCCAGTAAAACTAA 57.144 30.769 0.00 0.00 0.00 2.24
4 5 9.461312 AATTTGATGTGATAGCCAGTAAAACTA 57.539 29.630 0.00 0.00 0.00 2.24
5 6 7.944729 ATTTGATGTGATAGCCAGTAAAACT 57.055 32.000 0.00 0.00 0.00 2.66
8 9 9.237187 TGTTAATTTGATGTGATAGCCAGTAAA 57.763 29.630 0.00 0.00 0.00 2.01
9 10 8.800370 TGTTAATTTGATGTGATAGCCAGTAA 57.200 30.769 0.00 0.00 0.00 2.24
10 11 8.264347 TCTGTTAATTTGATGTGATAGCCAGTA 58.736 33.333 0.00 0.00 0.00 2.74
11 12 7.112122 TCTGTTAATTTGATGTGATAGCCAGT 58.888 34.615 0.00 0.00 0.00 4.00
12 13 7.558161 TCTGTTAATTTGATGTGATAGCCAG 57.442 36.000 0.00 0.00 0.00 4.85
13 14 7.936496 TTCTGTTAATTTGATGTGATAGCCA 57.064 32.000 0.00 0.00 0.00 4.75
14 15 8.462016 AGTTTCTGTTAATTTGATGTGATAGCC 58.538 33.333 0.00 0.00 0.00 3.93
15 16 9.282247 CAGTTTCTGTTAATTTGATGTGATAGC 57.718 33.333 0.00 0.00 0.00 2.97
19 20 8.564574 GGTACAGTTTCTGTTAATTTGATGTGA 58.435 33.333 7.70 0.00 42.59 3.58
20 21 8.567948 AGGTACAGTTTCTGTTAATTTGATGTG 58.432 33.333 7.70 0.00 42.59 3.21
21 22 8.567948 CAGGTACAGTTTCTGTTAATTTGATGT 58.432 33.333 7.70 0.00 42.59 3.06
22 23 8.783093 TCAGGTACAGTTTCTGTTAATTTGATG 58.217 33.333 7.70 0.00 42.59 3.07
23 24 8.918202 TCAGGTACAGTTTCTGTTAATTTGAT 57.082 30.769 7.70 0.00 42.59 2.57
24 25 8.918202 ATCAGGTACAGTTTCTGTTAATTTGA 57.082 30.769 7.70 6.32 42.59 2.69
25 26 9.398170 CAATCAGGTACAGTTTCTGTTAATTTG 57.602 33.333 7.70 2.93 42.59 2.32
26 27 9.349713 TCAATCAGGTACAGTTTCTGTTAATTT 57.650 29.630 7.70 0.00 42.59 1.82
27 28 8.918202 TCAATCAGGTACAGTTTCTGTTAATT 57.082 30.769 7.70 0.00 42.59 1.40
28 29 8.918202 TTCAATCAGGTACAGTTTCTGTTAAT 57.082 30.769 7.70 0.00 42.59 1.40
29 30 8.740123 TTTCAATCAGGTACAGTTTCTGTTAA 57.260 30.769 7.70 0.00 42.59 2.01
30 31 7.444183 CCTTTCAATCAGGTACAGTTTCTGTTA 59.556 37.037 7.70 0.00 42.59 2.41
31 32 6.263168 CCTTTCAATCAGGTACAGTTTCTGTT 59.737 38.462 7.70 0.00 42.59 3.16
32 33 6.634955 ACCTTTCAATCAGGTACAGTTTCTGT 60.635 38.462 7.54 7.54 43.34 3.41
33 34 5.765182 ACCTTTCAATCAGGTACAGTTTCTG 59.235 40.000 0.00 0.00 43.34 3.02
34 35 5.941788 ACCTTTCAATCAGGTACAGTTTCT 58.058 37.500 0.00 0.00 43.34 2.52
35 36 6.635030 AACCTTTCAATCAGGTACAGTTTC 57.365 37.500 0.00 0.00 44.48 2.78
36 37 7.418337 AAAACCTTTCAATCAGGTACAGTTT 57.582 32.000 0.00 0.00 44.48 2.66
37 38 8.706322 ATAAAACCTTTCAATCAGGTACAGTT 57.294 30.769 0.00 0.00 44.48 3.16
38 39 7.942341 TGATAAAACCTTTCAATCAGGTACAGT 59.058 33.333 0.00 0.00 44.48 3.55
39 40 8.335532 TGATAAAACCTTTCAATCAGGTACAG 57.664 34.615 0.00 0.00 44.48 2.74
40 41 8.698973 TTGATAAAACCTTTCAATCAGGTACA 57.301 30.769 0.00 0.00 44.48 2.90
41 42 9.010029 TCTTGATAAAACCTTTCAATCAGGTAC 57.990 33.333 0.00 0.00 44.48 3.34
42 43 9.753674 ATCTTGATAAAACCTTTCAATCAGGTA 57.246 29.630 0.00 0.00 44.48 3.08
44 45 8.964772 AGATCTTGATAAAACCTTTCAATCAGG 58.035 33.333 0.00 0.00 37.45 3.86
61 62 8.683615 TGTCGTAATTGTGTACTAGATCTTGAT 58.316 33.333 11.29 0.00 0.00 2.57
62 63 8.047413 TGTCGTAATTGTGTACTAGATCTTGA 57.953 34.615 11.29 0.00 0.00 3.02
63 64 8.683550 TTGTCGTAATTGTGTACTAGATCTTG 57.316 34.615 0.00 0.36 0.00 3.02
91 92 7.819900 GTCAAGGAAGTGTTGAATACAGTCTAT 59.180 37.037 0.00 0.00 39.53 1.98
92 93 7.152645 GTCAAGGAAGTGTTGAATACAGTCTA 58.847 38.462 0.00 0.00 39.53 2.59
93 94 5.992217 GTCAAGGAAGTGTTGAATACAGTCT 59.008 40.000 0.00 0.00 39.53 3.24
150 151 2.602878 ACACGTACGCTGTAAATCCTG 58.397 47.619 16.72 4.36 0.00 3.86
158 159 0.319297 GGGAAGAACACGTACGCTGT 60.319 55.000 16.72 15.57 0.00 4.40
162 163 0.319405 AAGGGGGAAGAACACGTACG 59.681 55.000 15.01 15.01 0.00 3.67
212 215 7.756722 GGGAAGATGTGACAAATACAAGATTTG 59.243 37.037 8.17 8.17 42.81 2.32
215 218 6.484288 TGGGAAGATGTGACAAATACAAGAT 58.516 36.000 0.00 0.00 0.00 2.40
237 240 8.352942 GGGCTGTAACTAATTTCATTAAGATGG 58.647 37.037 0.00 0.00 33.93 3.51
238 241 8.070171 CGGGCTGTAACTAATTTCATTAAGATG 58.930 37.037 0.00 0.00 34.46 2.90
258 261 1.200020 CTAAAAGAAAGGCACGGGCTG 59.800 52.381 10.74 0.00 38.81 4.85
276 279 8.492673 CAGCAGTGGAAAATACACTAATTCTA 57.507 34.615 0.00 0.00 46.76 2.10
277 280 7.383102 CAGCAGTGGAAAATACACTAATTCT 57.617 36.000 0.00 0.00 46.76 2.40
297 303 1.792757 AAAGCCCCTGATGACCAGCA 61.793 55.000 0.00 0.00 41.57 4.41
302 308 2.507407 TACCAAAAGCCCCTGATGAC 57.493 50.000 0.00 0.00 0.00 3.06
320 326 2.804986 TGCTGCCACATTTCCAGATA 57.195 45.000 0.00 0.00 0.00 1.98
321 327 1.822990 CTTGCTGCCACATTTCCAGAT 59.177 47.619 0.00 0.00 0.00 2.90
326 332 2.129607 CACAACTTGCTGCCACATTTC 58.870 47.619 0.00 0.00 0.00 2.17
328 334 1.067516 GTCACAACTTGCTGCCACATT 59.932 47.619 0.00 0.00 0.00 2.71
329 335 0.670162 GTCACAACTTGCTGCCACAT 59.330 50.000 0.00 0.00 0.00 3.21
349 355 4.840716 AGATGCTTGAAGAATCTCAGGT 57.159 40.909 9.94 0.00 35.70 4.00
373 396 2.348104 CGTGTGGGTGGATCGAGGA 61.348 63.158 0.00 0.00 0.00 3.71
374 397 2.184322 CGTGTGGGTGGATCGAGG 59.816 66.667 0.00 0.00 0.00 4.63
376 399 2.654289 CACGTGTGGGTGGATCGA 59.346 61.111 7.58 0.00 34.27 3.59
377 400 3.118454 GCACGTGTGGGTGGATCG 61.118 66.667 18.38 0.00 38.36 3.69
451 482 1.858458 CTCGTGACAAGTCGCTTTTCA 59.142 47.619 11.49 4.90 37.92 2.69
469 516 5.124617 GGAAAGTTGGATGTTCATCTTCCTC 59.875 44.000 16.52 7.18 39.99 3.71
472 519 6.015940 ACAAGGAAAGTTGGATGTTCATCTTC 60.016 38.462 11.73 7.62 0.00 2.87
478 525 5.531287 AGTGTACAAGGAAAGTTGGATGTTC 59.469 40.000 0.00 0.00 0.00 3.18
483 530 4.850680 ACAAGTGTACAAGGAAAGTTGGA 58.149 39.130 0.00 0.00 0.00 3.53
484 531 6.877611 ATACAAGTGTACAAGGAAAGTTGG 57.122 37.500 0.00 0.00 32.72 3.77
494 541 9.575868 TTATGGAAGGAAAATACAAGTGTACAA 57.424 29.630 0.00 0.00 32.72 2.41
495 542 9.747898 ATTATGGAAGGAAAATACAAGTGTACA 57.252 29.630 0.00 0.00 32.72 2.90
498 545 9.533831 AGAATTATGGAAGGAAAATACAAGTGT 57.466 29.630 0.00 0.00 0.00 3.55
500 547 9.190317 GGAGAATTATGGAAGGAAAATACAAGT 57.810 33.333 0.00 0.00 0.00 3.16
501 548 9.413734 AGGAGAATTATGGAAGGAAAATACAAG 57.586 33.333 0.00 0.00 0.00 3.16
509 556 9.853177 GAAGAAATAGGAGAATTATGGAAGGAA 57.147 33.333 0.00 0.00 0.00 3.36
510 557 8.440771 GGAAGAAATAGGAGAATTATGGAAGGA 58.559 37.037 0.00 0.00 0.00 3.36
511 558 7.667635 GGGAAGAAATAGGAGAATTATGGAAGG 59.332 40.741 0.00 0.00 0.00 3.46
555 614 2.300437 AGGGTCAACTAGCACTTCAGAC 59.700 50.000 0.00 0.00 0.00 3.51
577 637 2.028130 CTAGCACACCCCTCACTCTAG 58.972 57.143 0.00 0.00 0.00 2.43
628 689 9.527157 TTTCCAAGATATTTACATGGAACTTCA 57.473 29.630 5.11 0.00 46.69 3.02
650 713 3.254411 CACAGAGCTTTCCTTTCCTTTCC 59.746 47.826 0.00 0.00 0.00 3.13
665 728 2.393271 ACAAGACCATAGCACAGAGC 57.607 50.000 0.00 0.00 46.19 4.09
666 729 3.668447 ACAACAAGACCATAGCACAGAG 58.332 45.455 0.00 0.00 0.00 3.35
667 730 3.769739 ACAACAAGACCATAGCACAGA 57.230 42.857 0.00 0.00 0.00 3.41
684 747 7.976734 ACAAAATCTTTGTCGACCAAATTACAA 59.023 29.630 14.12 0.00 42.02 2.41
689 752 6.475402 GTGAACAAAATCTTTGTCGACCAAAT 59.525 34.615 14.12 2.57 42.02 2.32
690 753 5.802956 GTGAACAAAATCTTTGTCGACCAAA 59.197 36.000 14.12 12.22 40.71 3.28
691 754 5.124776 AGTGAACAAAATCTTTGTCGACCAA 59.875 36.000 14.12 7.58 0.00 3.67
700 763 8.641499 TTTGCGATAAAGTGAACAAAATCTTT 57.359 26.923 0.00 0.00 34.98 2.52
706 769 9.469807 AAACATATTTGCGATAAAGTGAACAAA 57.530 25.926 0.00 0.00 0.00 2.83
709 772 8.667987 TGAAACATATTTGCGATAAAGTGAAC 57.332 30.769 0.00 0.00 0.00 3.18
710 773 8.726068 TCTGAAACATATTTGCGATAAAGTGAA 58.274 29.630 0.00 0.00 0.00 3.18
729 792 4.559862 TCTCCTTTCTCCCATCTGAAAC 57.440 45.455 0.00 0.00 0.00 2.78
732 795 4.019860 CACTTTCTCCTTTCTCCCATCTGA 60.020 45.833 0.00 0.00 0.00 3.27
734 797 3.308046 GCACTTTCTCCTTTCTCCCATCT 60.308 47.826 0.00 0.00 0.00 2.90
735 798 3.013219 GCACTTTCTCCTTTCTCCCATC 58.987 50.000 0.00 0.00 0.00 3.51
736 799 2.376518 TGCACTTTCTCCTTTCTCCCAT 59.623 45.455 0.00 0.00 0.00 4.00
737 800 1.774254 TGCACTTTCTCCTTTCTCCCA 59.226 47.619 0.00 0.00 0.00 4.37
738 801 2.568623 TGCACTTTCTCCTTTCTCCC 57.431 50.000 0.00 0.00 0.00 4.30
739 802 2.227626 GCTTGCACTTTCTCCTTTCTCC 59.772 50.000 0.00 0.00 0.00 3.71
740 803 2.880890 TGCTTGCACTTTCTCCTTTCTC 59.119 45.455 0.00 0.00 0.00 2.87
741 804 2.936202 TGCTTGCACTTTCTCCTTTCT 58.064 42.857 0.00 0.00 0.00 2.52
742 805 3.505293 AGATGCTTGCACTTTCTCCTTTC 59.495 43.478 0.00 0.00 0.00 2.62
743 806 3.255149 CAGATGCTTGCACTTTCTCCTTT 59.745 43.478 0.00 0.00 0.00 3.11
744 807 2.818432 CAGATGCTTGCACTTTCTCCTT 59.182 45.455 0.00 0.00 0.00 3.36
745 808 2.039480 TCAGATGCTTGCACTTTCTCCT 59.961 45.455 0.00 0.00 0.00 3.69
760 843 5.588240 CCATGGTCACAAATGATTCAGATG 58.412 41.667 2.57 0.00 37.14 2.90
776 859 2.166870 TGCAGAATGAAATGCCATGGTC 59.833 45.455 14.67 6.41 41.85 4.02
800 883 2.993899 ACCTTGTTCGCTTCTTATCACG 59.006 45.455 0.00 0.00 0.00 4.35
802 885 2.742053 GCACCTTGTTCGCTTCTTATCA 59.258 45.455 0.00 0.00 0.00 2.15
824 907 1.164041 GCACAAGTTGGCCTACACGT 61.164 55.000 19.71 12.34 0.00 4.49
825 908 1.163420 TGCACAAGTTGGCCTACACG 61.163 55.000 19.71 11.71 0.00 4.49
826 909 1.001378 CTTGCACAAGTTGGCCTACAC 60.001 52.381 19.71 6.15 33.87 2.90
827 910 1.317613 CTTGCACAAGTTGGCCTACA 58.682 50.000 19.71 0.00 33.87 2.74
828 911 0.598065 CCTTGCACAAGTTGGCCTAC 59.402 55.000 9.54 9.54 36.72 3.18
829 912 1.178534 GCCTTGCACAAGTTGGCCTA 61.179 55.000 3.32 0.00 37.81 3.93
830 913 2.501602 GCCTTGCACAAGTTGGCCT 61.502 57.895 3.32 0.00 37.81 5.19
831 914 2.029518 GCCTTGCACAAGTTGGCC 59.970 61.111 7.96 0.00 37.81 5.36
832 915 1.300388 CTGCCTTGCACAAGTTGGC 60.300 57.895 7.96 8.46 43.49 4.52
833 916 0.313043 CTCTGCCTTGCACAAGTTGG 59.687 55.000 7.96 0.00 36.72 3.77
834 917 0.313043 CCTCTGCCTTGCACAAGTTG 59.687 55.000 9.41 0.00 36.72 3.16
835 918 1.458639 GCCTCTGCCTTGCACAAGTT 61.459 55.000 9.41 0.00 36.72 2.66
836 919 1.900498 GCCTCTGCCTTGCACAAGT 60.900 57.895 9.41 0.00 36.72 3.16
837 920 1.457823 TTGCCTCTGCCTTGCACAAG 61.458 55.000 3.32 3.32 38.14 3.16
838 921 1.455402 TTGCCTCTGCCTTGCACAA 60.455 52.632 0.00 0.00 34.16 3.33
839 922 2.195411 TTGCCTCTGCCTTGCACA 59.805 55.556 0.00 0.00 34.16 4.57
840 923 1.530013 ATGTTGCCTCTGCCTTGCAC 61.530 55.000 0.00 0.00 34.16 4.57
841 924 1.228644 ATGTTGCCTCTGCCTTGCA 60.229 52.632 0.00 0.00 36.33 4.08
842 925 1.214589 CATGTTGCCTCTGCCTTGC 59.785 57.895 0.00 0.00 36.33 4.01
843 926 1.214589 GCATGTTGCCTCTGCCTTG 59.785 57.895 0.00 0.00 37.42 3.61
844 927 2.338015 CGCATGTTGCCTCTGCCTT 61.338 57.895 0.00 0.00 41.12 4.35
845 928 2.184020 TACGCATGTTGCCTCTGCCT 62.184 55.000 0.00 0.00 41.12 4.75
846 929 1.745115 TACGCATGTTGCCTCTGCC 60.745 57.895 0.00 0.00 41.12 4.85
847 930 1.425428 GTACGCATGTTGCCTCTGC 59.575 57.895 0.00 0.00 41.12 4.26
848 931 1.709760 CGTACGCATGTTGCCTCTG 59.290 57.895 0.52 0.00 41.12 3.35
849 932 2.100631 GCGTACGCATGTTGCCTCT 61.101 57.895 33.90 0.00 41.12 3.69
850 933 2.399611 GCGTACGCATGTTGCCTC 59.600 61.111 33.90 0.54 41.12 4.70
851 934 3.124921 GGCGTACGCATGTTGCCT 61.125 61.111 37.99 0.00 42.20 4.75
852 935 1.157870 ATAGGCGTACGCATGTTGCC 61.158 55.000 37.99 20.67 44.44 4.52
853 936 1.493772 TATAGGCGTACGCATGTTGC 58.506 50.000 37.99 21.38 44.11 4.17
854 937 4.454231 CATTTATAGGCGTACGCATGTTG 58.546 43.478 37.99 22.15 44.11 3.33
855 938 3.059188 GCATTTATAGGCGTACGCATGTT 60.059 43.478 37.99 25.61 44.11 2.71
856 939 2.478894 GCATTTATAGGCGTACGCATGT 59.521 45.455 37.99 32.08 44.11 3.21
857 940 2.159707 GGCATTTATAGGCGTACGCATG 60.160 50.000 37.99 30.08 44.11 4.06
858 941 2.073816 GGCATTTATAGGCGTACGCAT 58.926 47.619 37.99 34.59 44.11 4.73
859 942 1.069513 AGGCATTTATAGGCGTACGCA 59.930 47.619 37.99 21.95 44.11 5.24
860 943 1.792006 AGGCATTTATAGGCGTACGC 58.208 50.000 31.54 31.54 41.06 4.42
861 944 3.059868 CACAAGGCATTTATAGGCGTACG 60.060 47.826 11.84 11.84 36.55 3.67
862 945 4.025145 GTCACAAGGCATTTATAGGCGTAC 60.025 45.833 0.00 0.00 36.55 3.67
863 946 4.124238 GTCACAAGGCATTTATAGGCGTA 58.876 43.478 0.00 0.00 36.55 4.42
881 964 0.391661 ATGTGATGAGCGGGTGTCAC 60.392 55.000 12.70 12.70 40.93 3.67
882 965 0.108186 GATGTGATGAGCGGGTGTCA 60.108 55.000 0.00 0.00 0.00 3.58
883 966 0.811616 GGATGTGATGAGCGGGTGTC 60.812 60.000 0.00 0.00 0.00 3.67
884 967 1.221840 GGATGTGATGAGCGGGTGT 59.778 57.895 0.00 0.00 0.00 4.16
885 968 0.531532 GAGGATGTGATGAGCGGGTG 60.532 60.000 0.00 0.00 0.00 4.61
886 969 0.977627 TGAGGATGTGATGAGCGGGT 60.978 55.000 0.00 0.00 0.00 5.28
887 970 0.395686 ATGAGGATGTGATGAGCGGG 59.604 55.000 0.00 0.00 0.00 6.13
888 971 1.607509 GGATGAGGATGTGATGAGCGG 60.608 57.143 0.00 0.00 0.00 5.52
889 972 1.607509 GGGATGAGGATGTGATGAGCG 60.608 57.143 0.00 0.00 0.00 5.03
890 973 1.271271 GGGGATGAGGATGTGATGAGC 60.271 57.143 0.00 0.00 0.00 4.26
891 974 2.302445 GAGGGGATGAGGATGTGATGAG 59.698 54.545 0.00 0.00 0.00 2.90
892 975 2.333069 GAGGGGATGAGGATGTGATGA 58.667 52.381 0.00 0.00 0.00 2.92
893 976 1.350351 GGAGGGGATGAGGATGTGATG 59.650 57.143 0.00 0.00 0.00 3.07
894 977 1.225168 AGGAGGGGATGAGGATGTGAT 59.775 52.381 0.00 0.00 0.00 3.06
895 978 0.644380 AGGAGGGGATGAGGATGTGA 59.356 55.000 0.00 0.00 0.00 3.58
896 979 1.055040 GAGGAGGGGATGAGGATGTG 58.945 60.000 0.00 0.00 0.00 3.21
897 980 0.644380 TGAGGAGGGGATGAGGATGT 59.356 55.000 0.00 0.00 0.00 3.06
898 981 1.698532 CTTGAGGAGGGGATGAGGATG 59.301 57.143 0.00 0.00 0.00 3.51
899 982 1.296523 ACTTGAGGAGGGGATGAGGAT 59.703 52.381 0.00 0.00 0.00 3.24
906 989 1.158466 TGCTCACTTGAGGAGGGGA 59.842 57.895 8.32 0.00 42.29 4.81
933 1016 3.413327 TGTGTAATTGTATTGCGTGGGT 58.587 40.909 0.00 0.00 0.00 4.51
939 1022 4.717991 TCTGCGTTGTGTAATTGTATTGC 58.282 39.130 0.00 0.00 0.00 3.56
948 1031 2.543848 CTGCTTCTTCTGCGTTGTGTAA 59.456 45.455 0.00 0.00 0.00 2.41
957 1044 1.134729 CCTCCTCTCTGCTTCTTCTGC 60.135 57.143 0.00 0.00 0.00 4.26
1050 1137 0.177836 GAGGCCTCTTCTCCTTGCTC 59.822 60.000 26.25 0.00 31.71 4.26
1051 1138 1.271127 GGAGGCCTCTTCTCCTTGCT 61.271 60.000 31.36 0.00 45.46 3.91
1142 1229 2.317609 GCTTGCTTCGAGCCGTCAA 61.318 57.895 4.73 0.00 41.51 3.18
1204 1782 2.431782 ACCCATCTACCATGCATTTTGC 59.568 45.455 0.00 0.00 45.29 3.68
1233 1812 1.531365 CCTTGCCCCACACACACAT 60.531 57.895 0.00 0.00 0.00 3.21
1243 1822 1.115326 AGAAAACAGCACCTTGCCCC 61.115 55.000 0.00 0.00 46.52 5.80
1244 1823 0.752658 AAGAAAACAGCACCTTGCCC 59.247 50.000 0.00 0.00 46.52 5.36
1246 1825 2.358898 TCAGAAGAAAACAGCACCTTGC 59.641 45.455 0.00 0.00 45.46 4.01
1247 1826 3.879295 TCTCAGAAGAAAACAGCACCTTG 59.121 43.478 0.00 0.00 0.00 3.61
1248 1827 4.156455 TCTCAGAAGAAAACAGCACCTT 57.844 40.909 0.00 0.00 0.00 3.50
1249 1828 3.845781 TCTCAGAAGAAAACAGCACCT 57.154 42.857 0.00 0.00 0.00 4.00
1250 1829 5.444663 AATTCTCAGAAGAAAACAGCACC 57.555 39.130 0.00 0.00 44.49 5.01
1251 1830 7.114106 GCTAAAATTCTCAGAAGAAAACAGCAC 59.886 37.037 0.00 0.00 44.49 4.40
1252 1831 7.141363 GCTAAAATTCTCAGAAGAAAACAGCA 58.859 34.615 0.00 0.00 44.49 4.41
1253 1832 7.141363 TGCTAAAATTCTCAGAAGAAAACAGC 58.859 34.615 0.00 0.00 44.49 4.40
1254 1833 9.178427 CTTGCTAAAATTCTCAGAAGAAAACAG 57.822 33.333 0.00 0.00 44.49 3.16
1256 1867 9.905171 ATCTTGCTAAAATTCTCAGAAGAAAAC 57.095 29.630 0.00 0.00 44.49 2.43
1269 1880 6.825721 CCACTGGAGACTATCTTGCTAAAATT 59.174 38.462 0.00 0.00 0.00 1.82
1279 1890 0.259065 TCCGCCACTGGAGACTATCT 59.741 55.000 0.00 0.00 33.05 1.98
1289 1900 0.674581 TTCATCAAGCTCCGCCACTG 60.675 55.000 0.00 0.00 0.00 3.66
1290 1901 0.392193 CTTCATCAAGCTCCGCCACT 60.392 55.000 0.00 0.00 0.00 4.00
1291 1902 0.391661 TCTTCATCAAGCTCCGCCAC 60.392 55.000 0.00 0.00 0.00 5.01
1292 1903 0.543277 ATCTTCATCAAGCTCCGCCA 59.457 50.000 0.00 0.00 0.00 5.69
1293 1904 1.332997 CAATCTTCATCAAGCTCCGCC 59.667 52.381 0.00 0.00 0.00 6.13
1294 1905 2.012673 ACAATCTTCATCAAGCTCCGC 58.987 47.619 0.00 0.00 0.00 5.54
1295 1906 3.686241 TCAACAATCTTCATCAAGCTCCG 59.314 43.478 0.00 0.00 0.00 4.63
1296 1907 4.096081 CCTCAACAATCTTCATCAAGCTCC 59.904 45.833 0.00 0.00 0.00 4.70
1297 1908 4.096081 CCCTCAACAATCTTCATCAAGCTC 59.904 45.833 0.00 0.00 0.00 4.09
1298 1909 4.015084 CCCTCAACAATCTTCATCAAGCT 58.985 43.478 0.00 0.00 0.00 3.74
1299 1910 3.129988 CCCCTCAACAATCTTCATCAAGC 59.870 47.826 0.00 0.00 0.00 4.01
1300 1911 3.698040 CCCCCTCAACAATCTTCATCAAG 59.302 47.826 0.00 0.00 0.00 3.02
1301 1912 3.700538 CCCCCTCAACAATCTTCATCAA 58.299 45.455 0.00 0.00 0.00 2.57
1302 1913 2.621407 GCCCCCTCAACAATCTTCATCA 60.621 50.000 0.00 0.00 0.00 3.07
1303 1914 2.027385 GCCCCCTCAACAATCTTCATC 58.973 52.381 0.00 0.00 0.00 2.92
1304 1915 1.642762 AGCCCCCTCAACAATCTTCAT 59.357 47.619 0.00 0.00 0.00 2.57
1305 1916 1.075601 AGCCCCCTCAACAATCTTCA 58.924 50.000 0.00 0.00 0.00 3.02
1306 1917 3.366052 TTAGCCCCCTCAACAATCTTC 57.634 47.619 0.00 0.00 0.00 2.87
1307 1918 3.529319 AGATTAGCCCCCTCAACAATCTT 59.471 43.478 0.00 0.00 30.55 2.40
1308 1919 3.117738 CAGATTAGCCCCCTCAACAATCT 60.118 47.826 0.00 0.00 34.03 2.40
1309 1920 3.117888 TCAGATTAGCCCCCTCAACAATC 60.118 47.826 0.00 0.00 0.00 2.67
1310 1921 2.852449 TCAGATTAGCCCCCTCAACAAT 59.148 45.455 0.00 0.00 0.00 2.71
1311 1922 2.239654 CTCAGATTAGCCCCCTCAACAA 59.760 50.000 0.00 0.00 0.00 2.83
1312 1923 1.839994 CTCAGATTAGCCCCCTCAACA 59.160 52.381 0.00 0.00 0.00 3.33
1313 1924 1.840635 ACTCAGATTAGCCCCCTCAAC 59.159 52.381 0.00 0.00 0.00 3.18
1314 1925 2.239654 CAACTCAGATTAGCCCCCTCAA 59.760 50.000 0.00 0.00 0.00 3.02
1315 1926 1.839994 CAACTCAGATTAGCCCCCTCA 59.160 52.381 0.00 0.00 0.00 3.86
1316 1927 2.103941 CTCAACTCAGATTAGCCCCCTC 59.896 54.545 0.00 0.00 0.00 4.30
1317 1928 2.122768 CTCAACTCAGATTAGCCCCCT 58.877 52.381 0.00 0.00 0.00 4.79
1318 1929 2.103941 CTCTCAACTCAGATTAGCCCCC 59.896 54.545 0.00 0.00 0.00 5.40
1319 1930 2.103941 CCTCTCAACTCAGATTAGCCCC 59.896 54.545 0.00 0.00 0.00 5.80
1320 1931 2.103941 CCCTCTCAACTCAGATTAGCCC 59.896 54.545 0.00 0.00 0.00 5.19
1321 1932 2.769095 ACCCTCTCAACTCAGATTAGCC 59.231 50.000 0.00 0.00 0.00 3.93
1322 1933 3.449018 TCACCCTCTCAACTCAGATTAGC 59.551 47.826 0.00 0.00 0.00 3.09
1323 1934 5.420421 TCTTCACCCTCTCAACTCAGATTAG 59.580 44.000 0.00 0.00 0.00 1.73
1324 1935 5.333581 TCTTCACCCTCTCAACTCAGATTA 58.666 41.667 0.00 0.00 0.00 1.75
1325 1936 4.163427 TCTTCACCCTCTCAACTCAGATT 58.837 43.478 0.00 0.00 0.00 2.40
1326 1937 3.784178 TCTTCACCCTCTCAACTCAGAT 58.216 45.455 0.00 0.00 0.00 2.90
1327 1938 3.244887 TCTTCACCCTCTCAACTCAGA 57.755 47.619 0.00 0.00 0.00 3.27
1328 1939 3.576118 TCTTCTTCACCCTCTCAACTCAG 59.424 47.826 0.00 0.00 0.00 3.35
1329 1940 3.576861 TCTTCTTCACCCTCTCAACTCA 58.423 45.455 0.00 0.00 0.00 3.41
1330 1941 4.817318 ATCTTCTTCACCCTCTCAACTC 57.183 45.455 0.00 0.00 0.00 3.01
1331 1942 5.782845 ACTTATCTTCTTCACCCTCTCAACT 59.217 40.000 0.00 0.00 0.00 3.16
1332 1943 6.043854 ACTTATCTTCTTCACCCTCTCAAC 57.956 41.667 0.00 0.00 0.00 3.18
1333 1944 6.688073 AACTTATCTTCTTCACCCTCTCAA 57.312 37.500 0.00 0.00 0.00 3.02
1334 1945 7.979786 ATAACTTATCTTCTTCACCCTCTCA 57.020 36.000 0.00 0.00 0.00 3.27
1367 1978 1.067821 GAGAGGTTATCAGTGGCGGAG 59.932 57.143 0.00 0.00 0.00 4.63
1368 1979 1.112113 GAGAGGTTATCAGTGGCGGA 58.888 55.000 0.00 0.00 0.00 5.54
1369 1980 1.115467 AGAGAGGTTATCAGTGGCGG 58.885 55.000 0.00 0.00 0.00 6.13
1370 1981 1.804372 GCAGAGAGGTTATCAGTGGCG 60.804 57.143 0.00 0.00 0.00 5.69
1371 1982 1.484240 AGCAGAGAGGTTATCAGTGGC 59.516 52.381 0.00 0.00 0.00 5.01
1372 1983 3.902881 AAGCAGAGAGGTTATCAGTGG 57.097 47.619 0.00 0.00 35.88 4.00
1373 1984 5.289675 CGTAAAAGCAGAGAGGTTATCAGTG 59.710 44.000 0.00 0.00 36.83 3.66
1374 1985 5.047235 ACGTAAAAGCAGAGAGGTTATCAGT 60.047 40.000 0.00 0.00 36.83 3.41
1375 1986 5.289675 CACGTAAAAGCAGAGAGGTTATCAG 59.710 44.000 0.00 0.00 36.83 2.90
1376 1987 5.168569 CACGTAAAAGCAGAGAGGTTATCA 58.831 41.667 0.00 0.00 36.83 2.15
1377 1988 4.567159 CCACGTAAAAGCAGAGAGGTTATC 59.433 45.833 0.00 0.00 36.83 1.75
1378 1989 4.222145 TCCACGTAAAAGCAGAGAGGTTAT 59.778 41.667 0.00 0.00 36.83 1.89
1379 1990 3.575256 TCCACGTAAAAGCAGAGAGGTTA 59.425 43.478 0.00 0.00 36.83 2.85
1380 1991 2.367567 TCCACGTAAAAGCAGAGAGGTT 59.632 45.455 0.00 0.00 40.25 3.50
1381 1992 1.968493 TCCACGTAAAAGCAGAGAGGT 59.032 47.619 0.00 0.00 0.00 3.85
1382 1993 2.231478 TCTCCACGTAAAAGCAGAGAGG 59.769 50.000 0.00 0.00 0.00 3.69
1383 1994 3.577649 TCTCCACGTAAAAGCAGAGAG 57.422 47.619 0.00 0.00 0.00 3.20
1384 1995 3.554337 GGTTCTCCACGTAAAAGCAGAGA 60.554 47.826 0.00 0.00 0.00 3.10
1385 1996 2.737252 GGTTCTCCACGTAAAAGCAGAG 59.263 50.000 0.00 0.00 0.00 3.35
1390 2001 4.573201 TCAAACAGGTTCTCCACGTAAAAG 59.427 41.667 0.00 0.00 35.89 2.27
1397 2008 2.814336 GTGGATCAAACAGGTTCTCCAC 59.186 50.000 17.91 17.91 44.01 4.02
1457 2129 0.448990 CTTGATGTCATGCACACCCG 59.551 55.000 0.00 0.00 38.04 5.28
1700 2787 1.279271 GCTTGGAGACCTAGCTTGGAA 59.721 52.381 21.63 3.23 46.01 3.53
1867 4396 2.462889 GCACGGATGGCATAACAAATG 58.537 47.619 0.00 0.00 0.00 2.32
1880 4409 0.110486 ACACCTCTTTTGGCACGGAT 59.890 50.000 0.00 0.00 0.00 4.18
1886 4415 1.620822 ACCATGACACCTCTTTTGGC 58.379 50.000 0.00 0.00 0.00 4.52
1893 4422 5.063880 AGTGAACTAAAACCATGACACCTC 58.936 41.667 0.00 0.00 0.00 3.85
1923 4452 6.534436 GTCTTCTAAATTACTCCCTCCGTTTC 59.466 42.308 0.00 0.00 0.00 2.78
2057 4989 1.269621 GCGGCCTAGGTATGTACACAG 60.270 57.143 11.31 0.00 0.00 3.66
2101 5033 7.332433 TCTACTTTTCCCCCTTGTTTACATA 57.668 36.000 0.00 0.00 0.00 2.29
2144 5966 9.004717 TCGATATTGAAAAACCAAGTATTGTGA 57.995 29.630 0.00 0.00 46.99 3.58
2145 5967 9.277565 CTCGATATTGAAAAACCAAGTATTGTG 57.722 33.333 0.00 0.00 46.99 3.33
2152 5974 5.095490 GCACCTCGATATTGAAAAACCAAG 58.905 41.667 0.00 0.00 0.00 3.61
2155 5977 4.965119 AGCACCTCGATATTGAAAAACC 57.035 40.909 0.00 0.00 0.00 3.27
2161 5983 3.195610 ACACTCAAGCACCTCGATATTGA 59.804 43.478 0.00 0.00 0.00 2.57
2162 5984 3.308053 CACACTCAAGCACCTCGATATTG 59.692 47.826 0.00 0.00 0.00 1.90
2163 5985 3.055819 ACACACTCAAGCACCTCGATATT 60.056 43.478 0.00 0.00 0.00 1.28
2164 5986 2.497675 ACACACTCAAGCACCTCGATAT 59.502 45.455 0.00 0.00 0.00 1.63
2165 5987 1.893137 ACACACTCAAGCACCTCGATA 59.107 47.619 0.00 0.00 0.00 2.92
2166 5988 0.681733 ACACACTCAAGCACCTCGAT 59.318 50.000 0.00 0.00 0.00 3.59
2168 5990 1.835483 GCACACACTCAAGCACCTCG 61.835 60.000 0.00 0.00 0.00 4.63
2169 5991 0.815213 TGCACACACTCAAGCACCTC 60.815 55.000 0.00 0.00 31.05 3.85
2171 5993 1.650912 CTGCACACACTCAAGCACC 59.349 57.895 0.00 0.00 32.87 5.01
2172 5994 1.097547 ACCTGCACACACTCAAGCAC 61.098 55.000 0.00 0.00 32.87 4.40
2173 5995 1.096967 CACCTGCACACACTCAAGCA 61.097 55.000 0.00 0.00 35.43 3.91
2174 5996 1.650912 CACCTGCACACACTCAAGC 59.349 57.895 0.00 0.00 0.00 4.01
2175 5997 1.650912 GCACCTGCACACACTCAAG 59.349 57.895 0.00 0.00 41.59 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.