Multiple sequence alignment - TraesCS1B01G298400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G298400 chr1B 100.000 7251 0 0 1 7251 519618560 519625810 0.000000e+00 13391.0
1 TraesCS1B01G298400 chr1B 94.510 2623 79 13 1952 4517 518910057 518912671 0.000000e+00 3986.0
2 TraesCS1B01G298400 chr1B 96.460 791 16 4 4501 5290 518912838 518913617 0.000000e+00 1295.0
3 TraesCS1B01G298400 chr1B 97.841 602 13 0 1357 1958 518909305 518909906 0.000000e+00 1040.0
4 TraesCS1B01G298400 chr1B 96.364 550 15 3 5297 5844 518913723 518914269 0.000000e+00 900.0
5 TraesCS1B01G298400 chr1B 95.913 416 16 1 5844 6259 518914315 518914729 0.000000e+00 673.0
6 TraesCS1B01G298400 chr1B 89.863 365 37 0 1 365 518813097 518813461 3.060000e-128 470.0
7 TraesCS1B01G298400 chr1B 95.708 233 10 0 6031 6263 520100382 520100614 6.870000e-100 375.0
8 TraesCS1B01G298400 chr1B 95.755 212 9 0 1339 1550 519619835 519620046 6.970000e-90 342.0
9 TraesCS1B01G298400 chr1B 95.755 212 9 0 1276 1487 519619898 519620109 6.970000e-90 342.0
10 TraesCS1B01G298400 chr1B 94.845 194 10 0 1294 1487 518909305 518909498 3.290000e-78 303.0
11 TraesCS1B01G298400 chr1B 91.579 190 11 2 5844 6033 520100075 520100259 2.600000e-64 257.0
12 TraesCS1B01G298400 chr1B 96.644 149 5 0 1402 1550 519619835 519619983 1.560000e-61 248.0
13 TraesCS1B01G298400 chr1B 96.644 149 5 0 1276 1424 519619961 519620109 1.560000e-61 248.0
14 TraesCS1B01G298400 chr1B 95.973 149 6 0 1276 1424 518909350 518909498 7.270000e-60 243.0
15 TraesCS1B01G298400 chr1B 81.994 311 18 20 893 1166 518908669 518908978 5.660000e-56 230.0
16 TraesCS1B01G298400 chr1B 93.893 131 8 0 1420 1550 518909305 518909435 1.600000e-46 198.0
17 TraesCS1B01G298400 chr1B 94.958 119 5 1 5726 5844 520099847 520099964 1.240000e-42 185.0
18 TraesCS1B01G298400 chr1B 97.674 86 2 0 1465 1550 519619835 519619920 1.630000e-31 148.0
19 TraesCS1B01G298400 chr1B 97.674 86 2 0 1276 1361 519620024 519620109 1.630000e-31 148.0
20 TraesCS1B01G298400 chr1B 96.512 86 3 0 1276 1361 518909413 518909498 7.580000e-30 143.0
21 TraesCS1B01G298400 chr1B 94.118 85 5 0 363 447 440443756 440443840 5.900000e-26 130.0
22 TraesCS1B01G298400 chr1B 91.954 87 7 0 361 447 91644893 91644979 9.880000e-24 122.0
23 TraesCS1B01G298400 chr1B 91.954 87 7 0 361 447 407828956 407829042 9.880000e-24 122.0
24 TraesCS1B01G298400 chr1D 93.303 2613 92 24 2196 4750 386471440 386474027 0.000000e+00 3779.0
25 TraesCS1B01G298400 chr1D 95.982 1095 30 8 4752 5844 386474189 386475271 0.000000e+00 1766.0
26 TraesCS1B01G298400 chr1D 92.637 421 21 4 5844 6263 386475383 386475794 1.350000e-166 597.0
27 TraesCS1B01G298400 chr1D 91.594 345 17 8 1565 1901 386465880 386466220 3.960000e-127 466.0
28 TraesCS1B01G298400 chr1D 89.879 247 24 1 119 365 386464431 386464676 4.220000e-82 316.0
29 TraesCS1B01G298400 chr1D 86.667 210 18 8 438 639 21814066 21814273 2.630000e-54 224.0
30 TraesCS1B01G298400 chr1D 86.667 210 15 11 438 639 262520355 262520151 3.410000e-53 220.0
31 TraesCS1B01G298400 chr1D 85.833 120 11 4 2478 2595 386472228 386472343 9.880000e-24 122.0
32 TraesCS1B01G298400 chr1D 90.566 53 5 0 1898 1950 386471322 386471374 3.630000e-08 71.3
33 TraesCS1B01G298400 chr7B 90.892 1603 75 30 3588 5153 514515238 514513670 0.000000e+00 2085.0
34 TraesCS1B01G298400 chr7B 92.380 1168 59 14 2445 3586 514516663 514515500 0.000000e+00 1637.0
35 TraesCS1B01G298400 chr7B 90.413 1210 70 11 1953 3149 514517996 514516820 0.000000e+00 1550.0
36 TraesCS1B01G298400 chr7B 94.648 654 31 3 5194 5844 514512994 514512342 0.000000e+00 1011.0
37 TraesCS1B01G298400 chr7B 87.621 622 45 14 5844 6460 514512230 514511636 0.000000e+00 693.0
38 TraesCS1B01G298400 chr7B 92.053 302 17 6 1655 1949 514518459 514518158 1.130000e-112 418.0
39 TraesCS1B01G298400 chr7B 88.333 120 11 3 2478 2595 514516111 514515993 2.730000e-29 141.0
40 TraesCS1B01G298400 chr7B 85.833 120 12 5 2478 2595 514516974 514516858 9.880000e-24 122.0
41 TraesCS1B01G298400 chr7B 88.660 97 6 4 1565 1656 514518691 514518595 5.950000e-21 113.0
42 TraesCS1B01G298400 chr1A 91.898 1444 49 12 2708 4103 486399850 486401273 0.000000e+00 1956.0
43 TraesCS1B01G298400 chr1A 96.390 831 20 3 4913 5743 486403284 486404104 0.000000e+00 1360.0
44 TraesCS1B01G298400 chr1A 94.471 832 36 4 4102 4926 486402223 486403051 0.000000e+00 1273.0
45 TraesCS1B01G298400 chr1A 95.122 533 23 3 2187 2716 486389185 486389717 0.000000e+00 837.0
46 TraesCS1B01G298400 chr1A 91.905 420 32 2 5844 6263 486411106 486411523 2.910000e-163 586.0
47 TraesCS1B01G298400 chr1A 89.344 366 37 2 1 365 486386788 486387152 6.630000e-125 459.0
48 TraesCS1B01G298400 chr1A 90.400 250 8 5 7003 7251 531372254 531372020 1.520000e-81 315.0
49 TraesCS1B01G298400 chr1A 93.137 204 14 0 1949 2152 486388974 486389177 4.250000e-77 300.0
50 TraesCS1B01G298400 chr1A 98.261 115 2 0 5730 5844 486410880 486410994 1.230000e-47 202.0
51 TraesCS1B01G298400 chr1A 92.361 144 7 1 6317 6460 486411603 486411742 1.230000e-47 202.0
52 TraesCS1B01G298400 chr1A 89.116 147 10 5 827 969 486388661 486388805 2.080000e-40 178.0
53 TraesCS1B01G298400 chr1A 87.500 120 9 4 2478 2595 486400136 486400251 4.560000e-27 134.0
54 TraesCS1B01G298400 chr1A 87.500 64 5 2 6272 6335 372550073 372550013 3.630000e-08 71.3
55 TraesCS1B01G298400 chr7A 92.857 574 24 6 6679 7251 296574316 296573759 0.000000e+00 817.0
56 TraesCS1B01G298400 chr7A 92.135 356 12 3 6897 7251 299252411 299252751 8.450000e-134 488.0
57 TraesCS1B01G298400 chr7A 88.596 228 12 1 6465 6678 296574604 296574377 1.550000e-66 265.0
58 TraesCS1B01G298400 chr2A 90.777 206 12 6 440 639 244909758 244909554 1.200000e-67 268.0
59 TraesCS1B01G298400 chr2A 89.202 213 14 6 435 639 593720880 593720669 2.600000e-64 257.0
60 TraesCS1B01G298400 chr2A 89.372 207 16 5 438 639 244828387 244828592 9.340000e-64 255.0
61 TraesCS1B01G298400 chr2A 88.942 208 16 5 438 639 244908341 244908547 4.340000e-62 250.0
62 TraesCS1B01G298400 chr4D 85.577 208 23 6 438 639 416131218 416131012 2.050000e-50 211.0
63 TraesCS1B01G298400 chr4D 85.577 208 23 6 438 639 421204813 421204607 2.050000e-50 211.0
64 TraesCS1B01G298400 chr4D 91.954 87 6 1 361 447 319063883 319063968 3.550000e-23 121.0
65 TraesCS1B01G298400 chr6B 85.096 208 24 6 438 639 201209573 201209779 9.540000e-49 206.0
66 TraesCS1B01G298400 chr2D 87.037 162 12 3 2593 2749 554694339 554694496 2.690000e-39 174.0
67 TraesCS1B01G298400 chr7D 92.941 85 6 0 363 447 178507094 178507178 2.750000e-24 124.0
68 TraesCS1B01G298400 chr4B 90.426 94 9 0 354 447 46010119 46010212 2.750000e-24 124.0
69 TraesCS1B01G298400 chr4B 95.833 48 1 1 6269 6315 49514846 49514893 7.800000e-10 76.8
70 TraesCS1B01G298400 chr3D 92.857 84 6 0 364 447 476397729 476397646 9.880000e-24 122.0
71 TraesCS1B01G298400 chr3D 92.857 84 6 0 364 447 476404747 476404664 9.880000e-24 122.0
72 TraesCS1B01G298400 chr3D 97.778 45 1 0 6272 6316 530356817 530356861 2.170000e-10 78.7
73 TraesCS1B01G298400 chr3D 90.741 54 3 2 6272 6324 208707531 208707479 3.630000e-08 71.3
74 TraesCS1B01G298400 chr6D 92.771 83 6 0 365 447 47326771 47326689 3.550000e-23 121.0
75 TraesCS1B01G298400 chr6D 100.000 42 0 0 6272 6313 249445838 249445797 2.170000e-10 78.7
76 TraesCS1B01G298400 chr2B 89.062 64 7 0 6274 6337 21651938 21651875 6.030000e-11 80.5
77 TraesCS1B01G298400 chr5D 92.453 53 2 2 6272 6323 339105104 339105053 2.810000e-09 75.0
78 TraesCS1B01G298400 chr3B 94.000 50 1 2 6265 6312 611171535 611171486 2.810000e-09 75.0
79 TraesCS1B01G298400 chr5A 87.097 62 3 5 6272 6330 32129195 32129254 1.690000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G298400 chr1B 519618560 519625810 7250 False 13391.000000 13391 100.000000 1 7251 1 chr1B.!!$F5 7250
1 TraesCS1B01G298400 chr1B 518908669 518914729 6060 False 901.100000 3986 94.430500 893 6259 10 chr1B.!!$F6 5366
2 TraesCS1B01G298400 chr1B 520099847 520100614 767 False 272.333333 375 94.081667 5726 6263 3 chr1B.!!$F8 537
3 TraesCS1B01G298400 chr1D 386471322 386475794 4472 False 1267.060000 3779 91.664200 1898 6263 5 chr1D.!!$F3 4365
4 TraesCS1B01G298400 chr1D 386464431 386466220 1789 False 391.000000 466 90.736500 119 1901 2 chr1D.!!$F2 1782
5 TraesCS1B01G298400 chr7B 514511636 514518691 7055 True 863.333333 2085 90.092556 1565 6460 9 chr7B.!!$R1 4895
6 TraesCS1B01G298400 chr1A 486399850 486404104 4254 False 1180.750000 1956 92.564750 2478 5743 4 chr1A.!!$F2 3265
7 TraesCS1B01G298400 chr1A 486386788 486389717 2929 False 443.500000 837 91.679750 1 2716 4 chr1A.!!$F1 2715
8 TraesCS1B01G298400 chr1A 486410880 486411742 862 False 330.000000 586 94.175667 5730 6460 3 chr1A.!!$F3 730
9 TraesCS1B01G298400 chr7A 296573759 296574604 845 True 541.000000 817 90.726500 6465 7251 2 chr7A.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 400 0.035739 TGTGCCCTTAACTCGAACCC 59.964 55.000 0.00 0.0 0.00 4.11 F
1099 2634 0.032403 ATGACCGTCGTTGTTTCCGA 59.968 50.000 0.00 0.0 0.00 4.55 F
1303 2863 0.104777 TGATGCCTGCCTCCTCCTAT 60.105 55.000 0.00 0.0 0.00 2.57 F
1304 2864 0.324285 GATGCCTGCCTCCTCCTATG 59.676 60.000 0.00 0.0 0.00 2.23 F
2060 4107 0.807667 GACATGGTAGAGCTGCGGTG 60.808 60.000 0.00 0.0 0.00 4.94 F
2109 4156 2.365068 CGTGTGTTGACTCGCTCCG 61.365 63.158 0.00 0.0 32.82 4.63 F
2529 4581 2.765699 GAGAGGGAAAGAGAGACAGCAT 59.234 50.000 0.00 0.0 0.00 3.79 F
3788 6997 0.111253 AGCTTTTAGCCTGCCACACT 59.889 50.000 0.00 0.0 43.77 3.55 F
4590 8968 0.176910 TGGACGGCGATTATGAAGCA 59.823 50.000 16.62 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 2844 0.104777 ATAGGAGGAGGCAGGCATCA 60.105 55.000 8.27 0.00 0.00 3.07 R
1987 4034 0.956902 ATCGCTTGCTGCACATGACA 60.957 50.000 0.00 0.00 43.06 3.58 R
2783 4844 2.002586 TGAGAAATCTACAGCTTGCGC 58.997 47.619 0.00 0.00 0.00 6.09 R
2871 4933 3.379372 GCGCCGTATTCTCAGGGTATATA 59.621 47.826 0.00 0.00 0.00 0.86 R
3413 6362 1.444933 ATCACAAGACCAGTGGGGAA 58.555 50.000 15.21 0.00 41.15 3.97 R
3415 6364 3.433306 TTTATCACAAGACCAGTGGGG 57.567 47.619 15.21 2.42 44.81 4.96 R
4247 8436 0.959372 CTGGAGACCCGTCGTACAGT 60.959 60.000 0.00 0.00 34.29 3.55 R
5290 10715 0.320334 TGGCGCTCGAAACTGAATGA 60.320 50.000 7.64 0.00 0.00 2.57 R
6259 12096 0.108329 AGAAATGGTGCCCTACGTCG 60.108 55.000 0.00 0.00 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.571653 CTCATGGTTGGTAAGGAGGACA 59.428 50.000 0.00 0.00 0.00 4.02
68 69 0.683973 ATGAGGACCATCTCGCCATC 59.316 55.000 0.00 0.00 36.61 3.51
123 124 1.729838 GTGTCGACAGAGGTGCGTC 60.730 63.158 20.73 0.00 0.00 5.19
220 222 2.543653 GGTTTTGTGCTCAGACGCAAAT 60.544 45.455 8.13 0.00 46.21 2.32
222 224 3.811722 TTTGTGCTCAGACGCAAATAG 57.188 42.857 4.36 0.00 43.17 1.73
225 227 7.536304 TTTTGTGCTCAGACGCAAATAGAGC 62.536 44.000 0.00 0.00 46.21 4.09
233 235 3.056536 AGACGCAAATAGAGCTGAACTGA 60.057 43.478 0.00 0.00 0.00 3.41
244 246 1.194772 GCTGAACTGACGTTTAGTGGC 59.805 52.381 7.11 8.38 38.57 5.01
256 258 0.844661 TTAGTGGCCATGGTCTGGGT 60.845 55.000 19.09 1.68 46.06 4.51
268 270 2.258109 GGTCTGGGTAGAGTGAAAGGT 58.742 52.381 0.00 0.00 32.48 3.50
309 311 4.002316 CCATAAATTTGGGTTTGTGCCAG 58.998 43.478 0.00 0.00 31.33 4.85
314 316 1.709578 TTGGGTTTGTGCCAGCATTA 58.290 45.000 0.00 0.00 0.00 1.90
350 352 1.292061 GTACAACGCAAGACACCACA 58.708 50.000 0.00 0.00 43.62 4.17
365 367 5.637810 AGACACCACACGACAATGTAAATAG 59.362 40.000 0.00 0.00 0.00 1.73
367 369 4.932799 CACCACACGACAATGTAAATAGGA 59.067 41.667 0.00 0.00 0.00 2.94
368 370 5.410132 CACCACACGACAATGTAAATAGGAA 59.590 40.000 0.00 0.00 0.00 3.36
370 372 5.410132 CCACACGACAATGTAAATAGGAACA 59.590 40.000 0.00 0.00 0.00 3.18
373 375 8.020819 CACACGACAATGTAAATAGGAACATTT 58.979 33.333 0.00 0.00 42.22 2.32
374 376 9.221933 ACACGACAATGTAAATAGGAACATTTA 57.778 29.630 0.00 0.00 42.22 1.40
388 390 9.875708 ATAGGAACATTTATATTTGTGCCCTTA 57.124 29.630 8.37 0.00 41.84 2.69
389 391 8.602472 AGGAACATTTATATTTGTGCCCTTAA 57.398 30.769 8.37 0.00 41.84 1.85
390 392 8.474831 AGGAACATTTATATTTGTGCCCTTAAC 58.525 33.333 8.37 0.00 41.84 2.01
392 394 9.516314 GAACATTTATATTTGTGCCCTTAACTC 57.484 33.333 0.00 0.00 0.00 3.01
393 395 7.703328 ACATTTATATTTGTGCCCTTAACTCG 58.297 34.615 0.00 0.00 0.00 4.18
394 396 7.554835 ACATTTATATTTGTGCCCTTAACTCGA 59.445 33.333 0.00 0.00 0.00 4.04
395 397 7.925043 TTTATATTTGTGCCCTTAACTCGAA 57.075 32.000 0.00 0.00 0.00 3.71
396 398 5.813080 ATATTTGTGCCCTTAACTCGAAC 57.187 39.130 0.00 0.00 0.00 3.95
397 399 1.886886 TTGTGCCCTTAACTCGAACC 58.113 50.000 0.00 0.00 0.00 3.62
398 400 0.035739 TGTGCCCTTAACTCGAACCC 59.964 55.000 0.00 0.00 0.00 4.11
399 401 0.035739 GTGCCCTTAACTCGAACCCA 59.964 55.000 0.00 0.00 0.00 4.51
400 402 0.035739 TGCCCTTAACTCGAACCCAC 59.964 55.000 0.00 0.00 0.00 4.61
401 403 0.323957 GCCCTTAACTCGAACCCACT 59.676 55.000 0.00 0.00 0.00 4.00
402 404 1.551883 GCCCTTAACTCGAACCCACTA 59.448 52.381 0.00 0.00 0.00 2.74
403 405 2.676176 GCCCTTAACTCGAACCCACTAC 60.676 54.545 0.00 0.00 0.00 2.73
405 407 3.119209 CCCTTAACTCGAACCCACTACTC 60.119 52.174 0.00 0.00 0.00 2.59
406 408 3.508793 CCTTAACTCGAACCCACTACTCA 59.491 47.826 0.00 0.00 0.00 3.41
407 409 4.021719 CCTTAACTCGAACCCACTACTCAA 60.022 45.833 0.00 0.00 0.00 3.02
408 410 5.510179 CCTTAACTCGAACCCACTACTCAAA 60.510 44.000 0.00 0.00 0.00 2.69
410 412 4.618920 ACTCGAACCCACTACTCAAATT 57.381 40.909 0.00 0.00 0.00 1.82
412 414 4.755123 ACTCGAACCCACTACTCAAATTTG 59.245 41.667 12.15 12.15 0.00 2.32
413 415 3.500680 TCGAACCCACTACTCAAATTTGC 59.499 43.478 13.54 0.00 0.00 3.68
415 417 2.525368 ACCCACTACTCAAATTTGCCC 58.475 47.619 13.54 0.00 0.00 5.36
419 421 4.340617 CCACTACTCAAATTTGCCCCTAA 58.659 43.478 13.54 0.00 0.00 2.69
424 426 8.527810 CACTACTCAAATTTGCCCCTAATTTTA 58.472 33.333 13.54 0.00 34.01 1.52
425 427 9.095700 ACTACTCAAATTTGCCCCTAATTTTAA 57.904 29.630 13.54 0.00 34.01 1.52
427 429 8.846943 ACTCAAATTTGCCCCTAATTTTAAAG 57.153 30.769 13.54 3.14 34.01 1.85
428 430 7.390440 ACTCAAATTTGCCCCTAATTTTAAAGC 59.610 33.333 13.54 0.00 34.01 3.51
429 431 7.227156 TCAAATTTGCCCCTAATTTTAAAGCA 58.773 30.769 13.54 0.00 34.01 3.91
435 437 5.423610 TGCCCCTAATTTTAAAGCATGCTTA 59.576 36.000 32.12 17.75 34.84 3.09
436 438 6.070538 TGCCCCTAATTTTAAAGCATGCTTAA 60.071 34.615 32.12 22.75 34.84 1.85
438 440 7.498900 GCCCCTAATTTTAAAGCATGCTTAAAT 59.501 33.333 32.12 28.13 34.84 1.40
439 441 9.394767 CCCCTAATTTTAAAGCATGCTTAAATT 57.605 29.630 34.36 34.36 37.65 1.82
445 447 2.696989 AGCATGCTTAAATTTGCCCC 57.303 45.000 16.30 0.00 35.71 5.80
446 448 2.190538 AGCATGCTTAAATTTGCCCCT 58.809 42.857 16.30 0.00 35.71 4.79
447 449 3.373830 AGCATGCTTAAATTTGCCCCTA 58.626 40.909 16.30 0.00 35.71 3.53
449 451 4.409901 AGCATGCTTAAATTTGCCCCTAAT 59.590 37.500 16.30 0.00 35.71 1.73
450 452 5.104402 AGCATGCTTAAATTTGCCCCTAATT 60.104 36.000 16.30 0.00 35.71 1.40
453 455 7.474190 CATGCTTAAATTTGCCCCTAATTTTG 58.526 34.615 0.00 0.00 36.75 2.44
454 456 6.773638 TGCTTAAATTTGCCCCTAATTTTGA 58.226 32.000 0.00 0.00 36.75 2.69
456 458 7.390162 TGCTTAAATTTGCCCCTAATTTTGAAG 59.610 33.333 0.00 0.00 36.75 3.02
457 459 7.626240 GCTTAAATTTGCCCCTAATTTTGAAGC 60.626 37.037 0.00 12.17 38.28 3.86
458 460 4.906747 ATTTGCCCCTAATTTTGAAGCA 57.093 36.364 0.00 0.00 0.00 3.91
459 461 4.906747 TTTGCCCCTAATTTTGAAGCAT 57.093 36.364 0.00 0.00 0.00 3.79
460 462 3.891422 TGCCCCTAATTTTGAAGCATG 57.109 42.857 0.00 0.00 0.00 4.06
461 463 2.093553 TGCCCCTAATTTTGAAGCATGC 60.094 45.455 10.51 10.51 0.00 4.06
462 464 2.169144 GCCCCTAATTTTGAAGCATGCT 59.831 45.455 16.30 16.30 0.00 3.79
463 465 3.739209 GCCCCTAATTTTGAAGCATGCTC 60.739 47.826 22.93 14.85 0.00 4.26
465 467 4.081531 CCCCTAATTTTGAAGCATGCTCAA 60.082 41.667 22.93 21.85 0.00 3.02
466 468 5.481105 CCCTAATTTTGAAGCATGCTCAAA 58.519 37.500 27.08 27.08 0.00 2.69
468 470 6.596497 CCCTAATTTTGAAGCATGCTCAAATT 59.404 34.615 29.42 29.42 34.01 1.82
469 471 7.120138 CCCTAATTTTGAAGCATGCTCAAATTT 59.880 33.333 30.56 29.99 34.01 1.82
471 473 4.735662 TTTGAAGCATGCTCAAATTTGC 57.264 36.364 27.08 3.39 35.34 3.68
473 475 1.060122 GAAGCATGCTCAAATTTGCGC 59.940 47.619 22.93 23.03 40.00 6.09
474 476 0.738412 AGCATGCTCAAATTTGCGCC 60.738 50.000 25.79 13.49 38.07 6.53
476 478 1.274596 CATGCTCAAATTTGCGCCTC 58.725 50.000 25.79 8.71 38.07 4.70
478 480 1.514873 GCTCAAATTTGCGCCTCCG 60.515 57.895 20.02 1.77 33.03 4.63
488 490 3.409856 CGCCTCCGCCATTAGTTG 58.590 61.111 0.00 0.00 0.00 3.16
489 491 1.153449 CGCCTCCGCCATTAGTTGA 60.153 57.895 0.00 0.00 0.00 3.18
490 492 0.742990 CGCCTCCGCCATTAGTTGAA 60.743 55.000 0.00 0.00 0.00 2.69
491 493 0.733150 GCCTCCGCCATTAGTTGAAC 59.267 55.000 0.00 0.00 0.00 3.18
492 494 1.679032 GCCTCCGCCATTAGTTGAACT 60.679 52.381 2.37 2.37 0.00 3.01
493 495 2.711542 CCTCCGCCATTAGTTGAACTT 58.288 47.619 1.97 0.00 0.00 2.66
494 496 3.869065 CCTCCGCCATTAGTTGAACTTA 58.131 45.455 1.97 0.00 0.00 2.24
495 497 4.451900 CCTCCGCCATTAGTTGAACTTAT 58.548 43.478 1.97 0.00 0.00 1.73
496 498 5.607477 CCTCCGCCATTAGTTGAACTTATA 58.393 41.667 1.97 0.00 0.00 0.98
497 499 5.696724 CCTCCGCCATTAGTTGAACTTATAG 59.303 44.000 1.97 0.00 0.00 1.31
498 500 6.462487 CCTCCGCCATTAGTTGAACTTATAGA 60.462 42.308 1.97 0.00 0.00 1.98
499 501 6.880484 TCCGCCATTAGTTGAACTTATAGAA 58.120 36.000 1.97 0.00 0.00 2.10
500 502 7.332557 TCCGCCATTAGTTGAACTTATAGAAA 58.667 34.615 1.97 0.00 0.00 2.52
501 503 7.990886 TCCGCCATTAGTTGAACTTATAGAAAT 59.009 33.333 1.97 0.00 0.00 2.17
502 504 9.268268 CCGCCATTAGTTGAACTTATAGAAATA 57.732 33.333 1.97 0.00 0.00 1.40
510 512 7.985752 AGTTGAACTTATAGAAATACCCTTCCG 59.014 37.037 0.00 0.00 0.00 4.30
511 513 7.427989 TGAACTTATAGAAATACCCTTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
512 514 7.270047 TGAACTTATAGAAATACCCTTCCGTG 58.730 38.462 0.00 0.00 0.00 4.94
513 515 5.608449 ACTTATAGAAATACCCTTCCGTGC 58.392 41.667 0.00 0.00 0.00 5.34
514 516 2.994186 TAGAAATACCCTTCCGTGCC 57.006 50.000 0.00 0.00 0.00 5.01
515 517 0.107848 AGAAATACCCTTCCGTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
516 518 0.392060 GAAATACCCTTCCGTGCCGT 60.392 55.000 0.00 0.00 0.00 5.68
517 519 0.037160 AAATACCCTTCCGTGCCGTT 59.963 50.000 0.00 0.00 0.00 4.44
518 520 0.037160 AATACCCTTCCGTGCCGTTT 59.963 50.000 0.00 0.00 0.00 3.60
519 521 0.392060 ATACCCTTCCGTGCCGTTTC 60.392 55.000 0.00 0.00 0.00 2.78
520 522 2.453379 TACCCTTCCGTGCCGTTTCC 62.453 60.000 0.00 0.00 0.00 3.13
521 523 3.419759 CCTTCCGTGCCGTTTCCG 61.420 66.667 0.00 0.00 0.00 4.30
522 524 2.663852 CTTCCGTGCCGTTTCCGT 60.664 61.111 0.00 0.00 0.00 4.69
523 525 2.662527 TTCCGTGCCGTTTCCGTC 60.663 61.111 0.00 0.00 0.00 4.79
524 526 4.668118 TCCGTGCCGTTTCCGTCC 62.668 66.667 0.00 0.00 0.00 4.79
525 527 4.973055 CCGTGCCGTTTCCGTCCA 62.973 66.667 0.00 0.00 0.00 4.02
526 528 3.411351 CGTGCCGTTTCCGTCCAG 61.411 66.667 0.00 0.00 0.00 3.86
527 529 2.280592 GTGCCGTTTCCGTCCAGT 60.281 61.111 0.00 0.00 0.00 4.00
528 530 2.029964 TGCCGTTTCCGTCCAGTC 59.970 61.111 0.00 0.00 0.00 3.51
529 531 2.029964 GCCGTTTCCGTCCAGTCA 59.970 61.111 0.00 0.00 0.00 3.41
530 532 1.595929 GCCGTTTCCGTCCAGTCAA 60.596 57.895 0.00 0.00 0.00 3.18
531 533 1.161563 GCCGTTTCCGTCCAGTCAAA 61.162 55.000 0.00 0.00 0.00 2.69
532 534 0.865769 CCGTTTCCGTCCAGTCAAAG 59.134 55.000 0.00 0.00 0.00 2.77
533 535 0.234884 CGTTTCCGTCCAGTCAAAGC 59.765 55.000 0.00 0.00 0.00 3.51
534 536 0.591659 GTTTCCGTCCAGTCAAAGCC 59.408 55.000 0.00 0.00 0.00 4.35
535 537 0.882927 TTTCCGTCCAGTCAAAGCCG 60.883 55.000 0.00 0.00 0.00 5.52
536 538 2.030562 CCGTCCAGTCAAAGCCGT 59.969 61.111 0.00 0.00 0.00 5.68
537 539 1.597027 CCGTCCAGTCAAAGCCGTT 60.597 57.895 0.00 0.00 0.00 4.44
538 540 1.164041 CCGTCCAGTCAAAGCCGTTT 61.164 55.000 0.00 0.00 0.00 3.60
539 541 0.041312 CGTCCAGTCAAAGCCGTTTG 60.041 55.000 0.00 0.00 43.96 2.93
546 548 2.031258 TCAAAGCCGTTTGACTGTCA 57.969 45.000 6.36 6.36 45.82 3.58
547 549 2.571212 TCAAAGCCGTTTGACTGTCAT 58.429 42.857 11.86 0.00 45.82 3.06
548 550 2.948979 TCAAAGCCGTTTGACTGTCATT 59.051 40.909 11.86 0.00 45.82 2.57
549 551 3.003275 TCAAAGCCGTTTGACTGTCATTC 59.997 43.478 11.86 6.95 45.82 2.67
550 552 2.550830 AGCCGTTTGACTGTCATTCT 57.449 45.000 11.86 2.20 0.00 2.40
551 553 2.146342 AGCCGTTTGACTGTCATTCTG 58.854 47.619 11.86 5.72 0.00 3.02
552 554 1.197721 GCCGTTTGACTGTCATTCTGG 59.802 52.381 11.86 11.95 0.00 3.86
553 555 1.197721 CCGTTTGACTGTCATTCTGGC 59.802 52.381 11.86 0.00 0.00 4.85
554 556 1.197721 CGTTTGACTGTCATTCTGGCC 59.802 52.381 11.86 0.00 0.00 5.36
555 557 1.197721 GTTTGACTGTCATTCTGGCCG 59.802 52.381 11.86 0.00 0.00 6.13
563 565 2.293122 TGTCATTCTGGCCGTTTCTTTG 59.707 45.455 0.00 0.00 0.00 2.77
564 566 2.552315 GTCATTCTGGCCGTTTCTTTGA 59.448 45.455 0.00 0.00 0.00 2.69
567 569 2.270352 TCTGGCCGTTTCTTTGACAT 57.730 45.000 0.00 0.00 0.00 3.06
576 578 4.511082 CCGTTTCTTTGACATTTTTGCCAT 59.489 37.500 0.00 0.00 0.00 4.40
577 579 5.007528 CCGTTTCTTTGACATTTTTGCCATT 59.992 36.000 0.00 0.00 0.00 3.16
579 581 6.456718 CGTTTCTTTGACATTTTTGCCATTGT 60.457 34.615 0.00 0.00 0.00 2.71
580 582 6.601741 TTCTTTGACATTTTTGCCATTGTC 57.398 33.333 0.00 0.00 39.11 3.18
581 583 5.916318 TCTTTGACATTTTTGCCATTGTCT 58.084 33.333 0.00 0.00 39.33 3.41
582 584 5.984926 TCTTTGACATTTTTGCCATTGTCTC 59.015 36.000 0.00 0.00 39.33 3.36
583 585 4.933505 TGACATTTTTGCCATTGTCTCA 57.066 36.364 0.00 0.00 39.33 3.27
585 587 5.856156 TGACATTTTTGCCATTGTCTCAAT 58.144 33.333 0.00 0.00 39.33 2.57
586 588 5.697178 TGACATTTTTGCCATTGTCTCAATG 59.303 36.000 13.47 13.47 39.33 2.82
587 589 5.613329 ACATTTTTGCCATTGTCTCAATGT 58.387 33.333 17.36 0.00 0.00 2.71
588 590 5.697633 ACATTTTTGCCATTGTCTCAATGTC 59.302 36.000 17.36 8.59 29.62 3.06
589 591 5.534207 TTTTTGCCATTGTCTCAATGTCT 57.466 34.783 17.36 0.00 0.00 3.41
590 592 4.771590 TTTGCCATTGTCTCAATGTCTC 57.228 40.909 17.36 9.32 0.00 3.36
591 593 3.421919 TGCCATTGTCTCAATGTCTCA 57.578 42.857 17.36 11.13 0.00 3.27
592 594 3.076621 TGCCATTGTCTCAATGTCTCAC 58.923 45.455 17.36 6.02 0.00 3.51
593 595 3.244665 TGCCATTGTCTCAATGTCTCACT 60.245 43.478 17.36 0.00 0.00 3.41
594 596 3.755378 GCCATTGTCTCAATGTCTCACTT 59.245 43.478 17.36 0.00 0.00 3.16
595 597 4.937620 GCCATTGTCTCAATGTCTCACTTA 59.062 41.667 17.36 0.00 0.00 2.24
596 598 5.163814 GCCATTGTCTCAATGTCTCACTTAC 60.164 44.000 17.36 0.00 0.00 2.34
597 599 6.169094 CCATTGTCTCAATGTCTCACTTACT 58.831 40.000 17.36 0.00 0.00 2.24
599 601 5.139435 TGTCTCAATGTCTCACTTACTGG 57.861 43.478 0.00 0.00 0.00 4.00
600 602 4.588951 TGTCTCAATGTCTCACTTACTGGT 59.411 41.667 0.00 0.00 0.00 4.00
601 603 4.926238 GTCTCAATGTCTCACTTACTGGTG 59.074 45.833 0.00 0.00 38.44 4.17
603 605 3.007940 TCAATGTCTCACTTACTGGTGGG 59.992 47.826 0.00 0.00 38.91 4.61
605 607 0.036294 GTCTCACTTACTGGTGGGGC 60.036 60.000 0.00 0.00 38.17 5.80
607 609 2.198304 CTCACTTACTGGTGGGGCCC 62.198 65.000 18.17 18.17 37.75 5.80
621 623 4.405756 TGGGGCCCACTCTAAAAATAAA 57.594 40.909 24.76 0.00 0.00 1.40
622 624 4.753186 TGGGGCCCACTCTAAAAATAAAA 58.247 39.130 24.76 0.00 0.00 1.52
647 649 7.681939 AAAAACTTTCTCTCACACACTTACA 57.318 32.000 0.00 0.00 0.00 2.41
650 652 4.406003 ACTTTCTCTCACACACTTACAGGT 59.594 41.667 0.00 0.00 0.00 4.00
651 653 4.322080 TTCTCTCACACACTTACAGGTG 57.678 45.455 0.00 0.00 42.34 4.00
653 655 1.691976 TCTCACACACTTACAGGTGGG 59.308 52.381 0.00 0.00 45.25 4.61
655 657 0.889186 CACACACTTACAGGTGGGGC 60.889 60.000 0.00 0.00 44.16 5.80
656 658 1.671054 CACACTTACAGGTGGGGCG 60.671 63.158 0.00 0.00 41.09 6.13
657 659 2.746277 CACTTACAGGTGGGGCGC 60.746 66.667 0.00 0.00 33.95 6.53
659 661 4.388499 CTTACAGGTGGGGCGCGT 62.388 66.667 8.43 0.00 0.00 6.01
667 1471 2.744318 TGGGGCGCGTGTGTATTG 60.744 61.111 8.43 0.00 0.00 1.90
672 1476 1.267832 GGGCGCGTGTGTATTGTTATG 60.268 52.381 8.43 0.00 0.00 1.90
673 1477 1.661617 GGCGCGTGTGTATTGTTATGA 59.338 47.619 8.43 0.00 0.00 2.15
677 1481 4.493382 GCGCGTGTGTATTGTTATGAATGA 60.493 41.667 8.43 0.00 0.00 2.57
681 1485 6.402118 GCGTGTGTATTGTTATGAATGAGTGT 60.402 38.462 0.00 0.00 0.00 3.55
684 1488 9.920826 GTGTGTATTGTTATGAATGAGTGTATG 57.079 33.333 0.00 0.00 0.00 2.39
685 1489 9.665719 TGTGTATTGTTATGAATGAGTGTATGT 57.334 29.630 0.00 0.00 0.00 2.29
709 1513 9.914131 TGTATTTATAGAGATGAGTGTATGTGC 57.086 33.333 0.00 0.00 0.00 4.57
721 1525 9.526713 GATGAGTGTATGTGCTTATATATGAGG 57.473 37.037 6.64 0.00 0.00 3.86
722 1526 8.422577 TGAGTGTATGTGCTTATATATGAGGT 57.577 34.615 6.64 0.00 0.00 3.85
723 1527 8.870116 TGAGTGTATGTGCTTATATATGAGGTT 58.130 33.333 6.64 0.00 0.00 3.50
724 1528 9.360093 GAGTGTATGTGCTTATATATGAGGTTC 57.640 37.037 6.64 0.00 0.00 3.62
742 1546 9.930693 ATGAGGTTCTAGAAAAACTAGTAACAG 57.069 33.333 6.78 0.00 46.15 3.16
743 1547 9.139734 TGAGGTTCTAGAAAAACTAGTAACAGA 57.860 33.333 6.78 0.00 46.15 3.41
744 1548 9.978044 GAGGTTCTAGAAAAACTAGTAACAGAA 57.022 33.333 6.78 0.00 46.15 3.02
764 1568 8.697846 ACAGAATACAATTTCATTGCAATCTG 57.302 30.769 9.53 12.25 43.84 2.90
765 1569 7.277098 ACAGAATACAATTTCATTGCAATCTGC 59.723 33.333 9.53 0.00 43.03 4.26
766 1570 7.491372 CAGAATACAATTTCATTGCAATCTGCT 59.509 33.333 9.53 0.00 45.31 4.24
767 1571 7.491372 AGAATACAATTTCATTGCAATCTGCTG 59.509 33.333 9.53 6.27 45.31 4.41
768 1572 4.250464 ACAATTTCATTGCAATCTGCTGG 58.750 39.130 9.53 0.00 45.31 4.85
769 1573 2.373540 TTTCATTGCAATCTGCTGGC 57.626 45.000 9.53 0.00 45.31 4.85
770 1574 0.171679 TTCATTGCAATCTGCTGGCG 59.828 50.000 9.53 0.00 45.31 5.69
794 1964 4.509600 GCAAGTCAATCTTCTATCTTCCCG 59.490 45.833 0.00 0.00 33.63 5.14
795 1965 4.946478 AGTCAATCTTCTATCTTCCCGG 57.054 45.455 0.00 0.00 0.00 5.73
832 2333 9.463902 TCGACCTCCTATCTTTATATAAGAAGG 57.536 37.037 0.00 0.00 0.00 3.46
886 2387 4.828072 AAAGAGCCGACCTTCTATCTTT 57.172 40.909 0.00 0.00 33.39 2.52
890 2391 7.598759 AAGAGCCGACCTTCTATCTTTATAA 57.401 36.000 0.00 0.00 0.00 0.98
969 2475 1.209275 GATCGATCGGCTGTTGGTCG 61.209 60.000 16.41 0.00 45.40 4.79
995 2519 0.326927 TCGGCGGGGAGAAGAAAAAT 59.673 50.000 7.21 0.00 0.00 1.82
1012 2536 7.934855 AGAAAAATCATCATGTAAGCAGTCT 57.065 32.000 0.00 0.00 0.00 3.24
1020 2544 3.449018 TCATGTAAGCAGTCTCTTCCTCC 59.551 47.826 0.00 0.00 0.00 4.30
1021 2545 2.889512 TGTAAGCAGTCTCTTCCTCCA 58.110 47.619 0.00 0.00 0.00 3.86
1022 2546 3.445008 TGTAAGCAGTCTCTTCCTCCAT 58.555 45.455 0.00 0.00 0.00 3.41
1024 2548 1.110442 AGCAGTCTCTTCCTCCATCG 58.890 55.000 0.00 0.00 0.00 3.84
1025 2549 1.107114 GCAGTCTCTTCCTCCATCGA 58.893 55.000 0.00 0.00 0.00 3.59
1026 2550 1.686052 GCAGTCTCTTCCTCCATCGAT 59.314 52.381 0.00 0.00 0.00 3.59
1027 2551 2.288152 GCAGTCTCTTCCTCCATCGATC 60.288 54.545 0.00 0.00 0.00 3.69
1028 2552 3.221771 CAGTCTCTTCCTCCATCGATCT 58.778 50.000 0.00 0.00 0.00 2.75
1029 2553 3.253188 CAGTCTCTTCCTCCATCGATCTC 59.747 52.174 0.00 0.00 0.00 2.75
1095 2630 1.956297 TTGGATGACCGTCGTTGTTT 58.044 45.000 0.00 0.00 39.42 2.83
1097 2632 0.794473 GGATGACCGTCGTTGTTTCC 59.206 55.000 0.00 0.00 0.00 3.13
1098 2633 0.437295 GATGACCGTCGTTGTTTCCG 59.563 55.000 0.00 0.00 0.00 4.30
1099 2634 0.032403 ATGACCGTCGTTGTTTCCGA 59.968 50.000 0.00 0.00 0.00 4.55
1100 2635 0.595567 TGACCGTCGTTGTTTCCGAG 60.596 55.000 0.00 0.00 34.56 4.63
1101 2636 0.318107 GACCGTCGTTGTTTCCGAGA 60.318 55.000 0.00 0.00 34.56 4.04
1102 2637 0.595825 ACCGTCGTTGTTTCCGAGAC 60.596 55.000 0.00 0.00 34.56 3.36
1103 2638 1.764967 CGTCGTTGTTTCCGAGACG 59.235 57.895 1.99 1.99 46.32 4.18
1104 2639 0.931662 CGTCGTTGTTTCCGAGACGT 60.932 55.000 7.96 0.00 46.34 4.34
1105 2640 1.660052 CGTCGTTGTTTCCGAGACGTA 60.660 52.381 7.96 0.00 46.34 3.57
1106 2641 1.710773 GTCGTTGTTTCCGAGACGTAC 59.289 52.381 0.00 0.00 36.89 3.67
1108 2643 2.033299 TCGTTGTTTCCGAGACGTACTT 59.967 45.455 0.00 0.00 36.89 2.24
1109 2644 2.791004 CGTTGTTTCCGAGACGTACTTT 59.209 45.455 0.00 0.00 0.00 2.66
1135 2677 8.428186 TTTCTTTCGATAAACACAAGTACTGT 57.572 30.769 0.00 0.00 39.56 3.55
1136 2678 8.428186 TTCTTTCGATAAACACAAGTACTGTT 57.572 30.769 0.00 0.00 35.47 3.16
1138 2680 6.774354 TTCGATAAACACAAGTACTGTTCC 57.226 37.500 0.00 0.00 35.47 3.62
1166 2715 6.049149 ACAGTATGGATTTCGATTCGACATT 58.951 36.000 8.55 0.00 43.62 2.71
1167 2716 6.018751 ACAGTATGGATTTCGATTCGACATTG 60.019 38.462 8.55 7.65 43.62 2.82
1168 2717 6.200854 CAGTATGGATTTCGATTCGACATTGA 59.799 38.462 8.55 0.00 34.89 2.57
1169 2718 4.857871 TGGATTTCGATTCGACATTGAC 57.142 40.909 8.55 3.87 34.89 3.18
1170 2719 3.621268 TGGATTTCGATTCGACATTGACC 59.379 43.478 8.55 6.39 34.89 4.02
1171 2720 3.002348 GGATTTCGATTCGACATTGACCC 59.998 47.826 8.55 1.90 34.89 4.46
1172 2721 2.018542 TTCGATTCGACATTGACCCC 57.981 50.000 8.55 0.00 34.89 4.95
1173 2722 1.191535 TCGATTCGACATTGACCCCT 58.808 50.000 4.29 0.00 0.00 4.79
1174 2723 2.380941 TCGATTCGACATTGACCCCTA 58.619 47.619 4.29 0.00 0.00 3.53
1175 2724 2.963101 TCGATTCGACATTGACCCCTAT 59.037 45.455 4.29 0.00 0.00 2.57
1176 2725 3.386726 TCGATTCGACATTGACCCCTATT 59.613 43.478 4.29 0.00 0.00 1.73
1177 2726 3.741344 CGATTCGACATTGACCCCTATTC 59.259 47.826 0.00 0.00 0.00 1.75
1178 2727 3.553828 TTCGACATTGACCCCTATTCC 57.446 47.619 0.00 0.00 0.00 3.01
1179 2728 2.759355 TCGACATTGACCCCTATTCCT 58.241 47.619 0.00 0.00 0.00 3.36
1180 2729 2.698797 TCGACATTGACCCCTATTCCTC 59.301 50.000 0.00 0.00 0.00 3.71
1181 2730 2.700897 CGACATTGACCCCTATTCCTCT 59.299 50.000 0.00 0.00 0.00 3.69
1182 2731 3.134804 CGACATTGACCCCTATTCCTCTT 59.865 47.826 0.00 0.00 0.00 2.85
1183 2732 4.709250 GACATTGACCCCTATTCCTCTTC 58.291 47.826 0.00 0.00 0.00 2.87
1184 2733 3.459969 ACATTGACCCCTATTCCTCTTCC 59.540 47.826 0.00 0.00 0.00 3.46
1185 2734 2.191981 TGACCCCTATTCCTCTTCCC 57.808 55.000 0.00 0.00 0.00 3.97
1186 2735 1.049402 GACCCCTATTCCTCTTCCCG 58.951 60.000 0.00 0.00 0.00 5.14
1187 2736 0.640495 ACCCCTATTCCTCTTCCCGA 59.360 55.000 0.00 0.00 0.00 5.14
1188 2737 1.343069 CCCCTATTCCTCTTCCCGAG 58.657 60.000 0.00 0.00 39.57 4.63
1189 2738 1.413227 CCCCTATTCCTCTTCCCGAGT 60.413 57.143 0.00 0.00 38.11 4.18
1190 2739 1.964933 CCCTATTCCTCTTCCCGAGTC 59.035 57.143 0.00 0.00 38.11 3.36
1191 2740 1.609555 CCTATTCCTCTTCCCGAGTCG 59.390 57.143 5.29 5.29 38.11 4.18
1192 2741 2.299521 CTATTCCTCTTCCCGAGTCGT 58.700 52.381 12.31 0.00 38.11 4.34
1193 2742 0.818296 ATTCCTCTTCCCGAGTCGTG 59.182 55.000 12.31 0.00 38.11 4.35
1194 2743 1.874345 TTCCTCTTCCCGAGTCGTGC 61.874 60.000 12.31 0.00 38.11 5.34
1195 2744 2.182030 CTCTTCCCGAGTCGTGCC 59.818 66.667 12.31 0.00 34.95 5.01
1196 2745 2.282958 TCTTCCCGAGTCGTGCCT 60.283 61.111 12.31 0.00 0.00 4.75
1197 2746 1.878656 CTCTTCCCGAGTCGTGCCTT 61.879 60.000 12.31 0.00 34.95 4.35
1198 2747 1.004918 CTTCCCGAGTCGTGCCTTT 60.005 57.895 12.31 0.00 0.00 3.11
1199 2748 0.245539 CTTCCCGAGTCGTGCCTTTA 59.754 55.000 12.31 0.00 0.00 1.85
1200 2749 0.899720 TTCCCGAGTCGTGCCTTTAT 59.100 50.000 12.31 0.00 0.00 1.40
1201 2750 0.899720 TCCCGAGTCGTGCCTTTATT 59.100 50.000 12.31 0.00 0.00 1.40
1202 2751 1.276989 TCCCGAGTCGTGCCTTTATTT 59.723 47.619 12.31 0.00 0.00 1.40
1203 2752 1.664151 CCCGAGTCGTGCCTTTATTTC 59.336 52.381 12.31 0.00 0.00 2.17
1204 2753 2.618053 CCGAGTCGTGCCTTTATTTCT 58.382 47.619 12.31 0.00 0.00 2.52
1205 2754 2.603560 CCGAGTCGTGCCTTTATTTCTC 59.396 50.000 12.31 0.00 0.00 2.87
1206 2755 3.512680 CGAGTCGTGCCTTTATTTCTCT 58.487 45.455 3.82 0.00 0.00 3.10
1207 2756 3.304559 CGAGTCGTGCCTTTATTTCTCTG 59.695 47.826 3.82 0.00 0.00 3.35
1208 2757 3.600388 AGTCGTGCCTTTATTTCTCTGG 58.400 45.455 0.00 0.00 0.00 3.86
1209 2758 3.260884 AGTCGTGCCTTTATTTCTCTGGA 59.739 43.478 0.00 0.00 0.00 3.86
1210 2759 4.000988 GTCGTGCCTTTATTTCTCTGGAA 58.999 43.478 0.00 0.00 0.00 3.53
1211 2760 4.454504 GTCGTGCCTTTATTTCTCTGGAAA 59.545 41.667 0.00 0.00 44.26 3.13
1212 2761 4.454504 TCGTGCCTTTATTTCTCTGGAAAC 59.545 41.667 0.00 0.00 43.16 2.78
1217 2766 7.121315 GTGCCTTTATTTCTCTGGAAACATAGT 59.879 37.037 0.00 0.00 43.16 2.12
1226 2775 8.648557 TTCTCTGGAAACATAGTATCGATTTG 57.351 34.615 1.71 0.00 41.51 2.32
1256 2816 8.304596 TCGAGATGAATCCCTATTATACAACAC 58.695 37.037 0.00 0.00 0.00 3.32
1257 2817 8.088365 CGAGATGAATCCCTATTATACAACACA 58.912 37.037 0.00 0.00 0.00 3.72
1275 2835 8.017587 ACAACACAAAAACAATGAAAAGAGTC 57.982 30.769 0.00 0.00 0.00 3.36
1276 2836 6.869421 ACACAAAAACAATGAAAAGAGTCG 57.131 33.333 0.00 0.00 0.00 4.18
1277 2837 5.804979 ACACAAAAACAATGAAAAGAGTCGG 59.195 36.000 0.00 0.00 0.00 4.79
1278 2838 5.231991 CACAAAAACAATGAAAAGAGTCGGG 59.768 40.000 0.00 0.00 0.00 5.14
1279 2839 3.643159 AAACAATGAAAAGAGTCGGGC 57.357 42.857 0.00 0.00 0.00 6.13
1280 2840 1.156736 ACAATGAAAAGAGTCGGGCG 58.843 50.000 0.00 0.00 0.00 6.13
1282 2842 1.128692 CAATGAAAAGAGTCGGGCGAC 59.871 52.381 0.00 0.00 44.86 5.19
1295 2855 4.479993 GCGACCTGATGCCTGCCT 62.480 66.667 0.00 0.00 0.00 4.75
1296 2856 2.202987 CGACCTGATGCCTGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
1298 2858 2.285969 ACCTGATGCCTGCCTCCT 60.286 61.111 0.00 0.00 0.00 3.69
1300 2860 2.509916 CTGATGCCTGCCTCCTCC 59.490 66.667 0.00 0.00 0.00 4.30
1301 2861 2.041762 TGATGCCTGCCTCCTCCT 59.958 61.111 0.00 0.00 0.00 3.69
1302 2862 0.762082 CTGATGCCTGCCTCCTCCTA 60.762 60.000 0.00 0.00 0.00 2.94
1303 2863 0.104777 TGATGCCTGCCTCCTCCTAT 60.105 55.000 0.00 0.00 0.00 2.57
1304 2864 0.324285 GATGCCTGCCTCCTCCTATG 59.676 60.000 0.00 0.00 0.00 2.23
1305 2865 1.132554 ATGCCTGCCTCCTCCTATGG 61.133 60.000 0.00 0.00 0.00 2.74
1311 2871 2.978278 CTGCCTCCTCCTATGGAAATCT 59.022 50.000 0.00 0.00 35.43 2.40
1313 2873 2.304470 GCCTCCTCCTATGGAAATCTCC 59.696 54.545 0.00 0.00 42.81 3.71
1364 3098 2.041762 TGATGCCTGCCTCCTCCT 59.958 61.111 0.00 0.00 0.00 3.69
1712 3588 7.527568 ACCTAAGCTACCTGATCTAATGTAC 57.472 40.000 0.00 0.00 0.00 2.90
1970 4017 3.880047 TCGTAATCGATCAGGTTGGTT 57.120 42.857 0.00 0.00 41.35 3.67
1987 4034 1.737793 GGTTATAGCTGCGTTGCTGTT 59.262 47.619 13.14 4.96 43.87 3.16
2060 4107 0.807667 GACATGGTAGAGCTGCGGTG 60.808 60.000 0.00 0.00 0.00 4.94
2109 4156 2.365068 CGTGTGTTGACTCGCTCCG 61.365 63.158 0.00 0.00 32.82 4.63
2262 4311 7.361799 CCAGTGTACCCAACTTCTTTTATTAGC 60.362 40.741 0.00 0.00 0.00 3.09
2315 4365 8.442632 TGTTTCTCTCTGCATCCTTATTATTG 57.557 34.615 0.00 0.00 0.00 1.90
2363 4414 7.083858 TCTCAATAGTTTGCTTGCATTGTTAC 58.916 34.615 0.00 0.00 32.61 2.50
2429 4481 6.966632 CACACATGGTGTTTCCTTATTAATCG 59.033 38.462 0.00 0.00 45.08 3.34
2529 4581 2.765699 GAGAGGGAAAGAGAGACAGCAT 59.234 50.000 0.00 0.00 0.00 3.79
2782 4843 5.543507 ATTGGGTTTTAAACACATGCTGA 57.456 34.783 13.83 0.00 45.71 4.26
2783 4844 4.582701 TGGGTTTTAAACACATGCTGAG 57.417 40.909 8.87 0.00 40.55 3.35
2824 4885 6.318648 TCTCAAATGTATGCGCCTTTTTATCT 59.681 34.615 4.18 0.00 0.00 1.98
3097 6026 6.017109 CACAAACTACAAGGTATGCAACTTCT 60.017 38.462 0.00 0.00 0.00 2.85
3177 6106 6.712547 GGTCTAAGATAGATGGTTTGGAATGG 59.287 42.308 0.00 0.00 37.13 3.16
3194 6123 7.684317 TGGAATGGGTTATCTGTCTTGTATA 57.316 36.000 0.00 0.00 0.00 1.47
3195 6124 8.096621 TGGAATGGGTTATCTGTCTTGTATAA 57.903 34.615 0.00 0.00 0.00 0.98
3196 6125 8.723365 TGGAATGGGTTATCTGTCTTGTATAAT 58.277 33.333 0.00 0.00 0.00 1.28
3197 6126 9.003658 GGAATGGGTTATCTGTCTTGTATAATG 57.996 37.037 0.00 0.00 0.00 1.90
3199 6128 7.446106 TGGGTTATCTGTCTTGTATAATGGT 57.554 36.000 0.00 0.00 0.00 3.55
3201 6130 6.204882 GGGTTATCTGTCTTGTATAATGGTGC 59.795 42.308 0.00 0.00 0.00 5.01
3220 6166 5.537295 TGGTGCTTTAGTTACTGACTAGACA 59.463 40.000 0.00 0.00 41.68 3.41
3250 6196 9.693739 TTTCCTGAAGATTTACTAATTATGGCA 57.306 29.630 0.00 0.00 0.00 4.92
3295 6244 6.479990 GCATGCATGAAGTACTAGATTGTGTA 59.520 38.462 30.64 0.00 0.00 2.90
3296 6245 7.011389 GCATGCATGAAGTACTAGATTGTGTAA 59.989 37.037 30.64 0.00 0.00 2.41
3297 6246 9.049523 CATGCATGAAGTACTAGATTGTGTAAT 57.950 33.333 22.59 0.00 0.00 1.89
3413 6362 6.458751 GGCTGATTCATGTATTTCGACATTGT 60.459 38.462 0.00 0.00 37.99 2.71
3415 6364 7.164826 GCTGATTCATGTATTTCGACATTGTTC 59.835 37.037 0.00 0.00 37.99 3.18
3428 6377 1.888512 CATTGTTCCCCACTGGTCTTG 59.111 52.381 0.00 0.00 34.77 3.02
3707 6916 6.856895 AGCATAGCTTGAATTCAAAAGGTAC 58.143 36.000 20.82 10.19 38.71 3.34
3788 6997 0.111253 AGCTTTTAGCCTGCCACACT 59.889 50.000 0.00 0.00 43.77 3.55
3946 7184 4.571984 TCCATACAAAGAATGTGATGAGCG 59.428 41.667 0.00 0.00 43.77 5.03
4086 7324 2.223711 GCAAACTCATCAACCCAAACGT 60.224 45.455 0.00 0.00 0.00 3.99
4247 8436 5.536161 AGCACTCCAAAGAAGCTTTTGATTA 59.464 36.000 11.64 0.00 39.79 1.75
4257 8446 5.345202 AGAAGCTTTTGATTACTGTACGACG 59.655 40.000 0.00 0.00 0.00 5.12
4259 8448 3.061697 GCTTTTGATTACTGTACGACGGG 59.938 47.826 0.00 0.00 0.00 5.28
4317 8512 5.241403 ACAATGAGGACAATGGTCTTGTA 57.759 39.130 0.00 0.00 43.77 2.41
4361 8556 4.280677 GTCCTTTGTTGGTTCCATGATTCA 59.719 41.667 0.00 0.00 0.00 2.57
4409 8604 8.722480 TTCACTTGTTGATACTATCCATTCTG 57.278 34.615 0.00 0.00 32.84 3.02
4441 8636 7.795047 TCAGGATCTTGCATATGAACTAGAAA 58.205 34.615 6.97 0.00 0.00 2.52
4590 8968 0.176910 TGGACGGCGATTATGAAGCA 59.823 50.000 16.62 0.00 0.00 3.91
4941 9729 9.126151 ACATATCGTATCTAGCAATAGCATAGT 57.874 33.333 0.00 0.00 45.49 2.12
4942 9730 9.958234 CATATCGTATCTAGCAATAGCATAGTT 57.042 33.333 0.00 0.00 45.49 2.24
4944 9732 8.918961 ATCGTATCTAGCAATAGCATAGTTTC 57.081 34.615 0.00 0.00 45.49 2.78
4945 9733 7.882179 TCGTATCTAGCAATAGCATAGTTTCA 58.118 34.615 0.00 0.00 45.49 2.69
4946 9734 8.023706 TCGTATCTAGCAATAGCATAGTTTCAG 58.976 37.037 0.00 0.00 45.49 3.02
4947 9735 8.023706 CGTATCTAGCAATAGCATAGTTTCAGA 58.976 37.037 0.00 0.00 45.49 3.27
4948 9736 9.134734 GTATCTAGCAATAGCATAGTTTCAGAC 57.865 37.037 0.00 0.00 45.49 3.51
5207 10632 5.986741 GCATGCAATTTCCATATCATGTTCA 59.013 36.000 14.21 0.00 35.17 3.18
5216 10641 6.757897 TCCATATCATGTTCACTGGTTTTC 57.242 37.500 0.00 0.00 0.00 2.29
5290 10715 8.599624 ATGAAACAGGATCTGGAACAAAATAT 57.400 30.769 0.00 0.00 38.70 1.28
5291 10716 8.055279 TGAAACAGGATCTGGAACAAAATATC 57.945 34.615 0.00 0.00 38.70 1.63
5304 10828 8.236586 TGGAACAAAATATCATTCAGTTTCGAG 58.763 33.333 0.00 0.00 31.92 4.04
5328 10853 2.099098 CCAAGTCCTGAGCGTTGTTTTT 59.901 45.455 0.00 0.00 0.00 1.94
5597 11125 5.941733 TGATTGACTGTTGTGTGCAATATC 58.058 37.500 0.00 0.00 36.92 1.63
5605 11133 5.804639 TGTTGTGTGCAATATCTTCCTAGT 58.195 37.500 0.00 0.00 36.92 2.57
5697 11225 7.444183 TCACTTGTAAGTTAGCTGCAAATTAGT 59.556 33.333 1.02 0.00 37.08 2.24
5875 11581 4.074259 TGTTTCTAACACATCAGCATGCT 58.926 39.130 16.30 16.30 36.25 3.79
5905 11616 6.127619 GGGCAGAGCAACTCAAATTTAAGTAT 60.128 38.462 0.00 0.00 32.06 2.12
5962 11673 7.984422 TGCCATCTTGTTCTTATGGTATATG 57.016 36.000 0.00 0.00 41.87 1.78
6010 11722 6.796705 AACATCTTAGTCCAACTAAAACGG 57.203 37.500 1.61 0.00 39.89 4.44
6210 12047 3.304794 GCTAGGGTGAGACGTATGATCAC 60.305 52.174 0.00 13.36 42.07 3.06
6272 12109 4.487412 CGGACGACGTAGGGCACC 62.487 72.222 0.00 0.00 44.44 5.01
6287 12124 2.423577 GGCACCATTTCTACGACAAGT 58.576 47.619 0.00 0.00 0.00 3.16
6288 12125 3.592059 GGCACCATTTCTACGACAAGTA 58.408 45.455 0.00 0.00 0.00 2.24
6290 12127 4.634443 GGCACCATTTCTACGACAAGTAAT 59.366 41.667 0.00 0.00 34.45 1.89
6291 12128 5.123344 GGCACCATTTCTACGACAAGTAATT 59.877 40.000 0.00 0.00 34.45 1.40
6292 12129 6.248631 GCACCATTTCTACGACAAGTAATTC 58.751 40.000 0.00 0.00 34.45 2.17
6294 12131 5.579511 ACCATTTCTACGACAAGTAATTCCG 59.420 40.000 0.00 0.00 34.45 4.30
6296 12133 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
6297 12134 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
6298 12135 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
6301 12138 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
6302 12139 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6303 12140 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6304 12141 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6305 12142 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6306 12143 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6307 12144 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
6308 12145 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
6311 12148 0.669077 CCGAACGGAGGGAGTAGATG 59.331 60.000 7.53 0.00 37.50 2.90
6315 12152 3.819337 CGAACGGAGGGAGTAGATGATAA 59.181 47.826 0.00 0.00 0.00 1.75
6350 12213 7.435488 GCGAGATGAAACTTTACTGAATAGCTA 59.565 37.037 0.00 0.00 0.00 3.32
6351 12214 8.963130 CGAGATGAAACTTTACTGAATAGCTAG 58.037 37.037 0.00 0.00 0.00 3.42
6352 12215 8.655651 AGATGAAACTTTACTGAATAGCTAGC 57.344 34.615 6.62 6.62 0.00 3.42
6353 12216 8.482128 AGATGAAACTTTACTGAATAGCTAGCT 58.518 33.333 23.12 23.12 0.00 3.32
6370 12236 4.622695 GCTAGCTTCCATCTTCAGAACACT 60.623 45.833 7.70 0.00 0.00 3.55
6407 12273 7.007723 TGTTGTTATTCTGGTTACCTTGGAAT 58.992 34.615 16.51 16.51 0.00 3.01
6462 12328 6.560711 ACCATTCGTAAAAATTACATCCTGC 58.439 36.000 1.67 0.00 0.00 4.85
6463 12329 6.151985 ACCATTCGTAAAAATTACATCCTGCA 59.848 34.615 1.67 0.00 0.00 4.41
6516 12382 0.098200 GCCGGCGTTAAAATCTCCAC 59.902 55.000 12.58 0.00 0.00 4.02
6602 12482 2.368105 GCTCGTGTGTCGCAGTCTG 61.368 63.158 0.00 0.00 39.67 3.51
6619 12499 1.762522 CTGGGGATCATCAGGGACGG 61.763 65.000 0.00 0.00 0.00 4.79
6621 12501 1.459539 GGGATCATCAGGGACGGGA 60.460 63.158 0.00 0.00 0.00 5.14
6658 12538 1.330521 CACGTTGGACAAGTTCACAGG 59.669 52.381 0.00 0.00 0.00 4.00
6710 12650 1.097547 CCTTGATCGACCATGGTGGC 61.098 60.000 25.52 9.91 42.67 5.01
6784 12724 2.674177 CGACGGAAGCCTAAGTTGTCAT 60.674 50.000 0.00 0.00 0.00 3.06
6823 12763 6.212791 AGTTCCTAGTTGCTATGTTAGACCAA 59.787 38.462 0.00 0.00 0.00 3.67
6841 12781 2.557452 CCAACTTTCCATTAGGCCCAGT 60.557 50.000 0.00 0.00 33.74 4.00
6846 12786 0.844661 TCCATTAGGCCCAGTGTGGT 60.845 55.000 0.00 0.00 35.17 4.16
6893 12833 1.204704 TGAGTTGTATCAGAGGCACCG 59.795 52.381 0.00 0.00 0.00 4.94
6900 12840 1.630126 ATCAGAGGCACCGGATTGCT 61.630 55.000 9.46 0.00 42.56 3.91
6931 12871 2.030274 GGGTTGTATGTGGCAGTTTCAC 60.030 50.000 0.00 0.00 35.82 3.18
6933 12873 1.904287 TGTATGTGGCAGTTTCACCC 58.096 50.000 0.00 0.00 34.46 4.61
6935 12875 2.224992 TGTATGTGGCAGTTTCACCCAT 60.225 45.455 0.00 0.00 34.46 4.00
7001 12941 3.756933 ACCCGTCAACACTTTAAGCTA 57.243 42.857 0.00 0.00 0.00 3.32
7043 12984 0.825010 CTGCAAGGAGGGCAACAGTT 60.825 55.000 0.00 0.00 41.39 3.16
7056 12997 3.181520 GGCAACAGTTAGTGCTACAATCG 60.182 47.826 0.00 0.00 0.00 3.34
7061 13002 1.327764 GTTAGTGCTACAATCGCTGCC 59.672 52.381 0.00 0.00 0.00 4.85
7062 13003 0.824109 TAGTGCTACAATCGCTGCCT 59.176 50.000 0.00 0.00 0.00 4.75
7063 13004 0.460987 AGTGCTACAATCGCTGCCTC 60.461 55.000 0.00 0.00 0.00 4.70
7064 13005 1.153369 TGCTACAATCGCTGCCTCC 60.153 57.895 0.00 0.00 0.00 4.30
7065 13006 1.144936 GCTACAATCGCTGCCTCCT 59.855 57.895 0.00 0.00 0.00 3.69
7066 13007 0.878086 GCTACAATCGCTGCCTCCTC 60.878 60.000 0.00 0.00 0.00 3.71
7067 13008 0.596083 CTACAATCGCTGCCTCCTCG 60.596 60.000 0.00 0.00 0.00 4.63
7068 13009 1.035385 TACAATCGCTGCCTCCTCGA 61.035 55.000 0.00 0.00 36.63 4.04
7074 13015 2.781158 GCTGCCTCCTCGACTCCTC 61.781 68.421 0.00 0.00 0.00 3.71
7094 13035 1.079819 TGTCAGCTCGCCTGCTTAC 60.080 57.895 3.76 3.76 41.98 2.34
7147 13088 3.661648 GCTGCCTTCCTTGGGGGA 61.662 66.667 0.00 0.00 43.41 4.81
7206 13147 0.756070 GAACGGGACTAGAGGAGGGG 60.756 65.000 0.00 0.00 0.00 4.79
7228 13169 6.100714 GGGGTACTCTTACTTTGGGATGATAA 59.899 42.308 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.696501 GCCCTTGTCCTCCTTACCAA 59.303 55.000 0.00 0.00 0.00 3.67
32 33 2.239654 CTCATTGCCCTTGTCCTCCTTA 59.760 50.000 0.00 0.00 0.00 2.69
42 43 1.213926 GAGATGGTCCTCATTGCCCTT 59.786 52.381 0.00 0.00 35.97 3.95
123 124 0.179936 GACATGAGGGAGAAGCTGGG 59.820 60.000 0.00 0.00 0.00 4.45
167 168 2.494918 CCCGCAAGTACCTCTCGG 59.505 66.667 6.50 6.50 39.79 4.63
174 175 3.766691 TCGCTCCCCCGCAAGTAC 61.767 66.667 0.00 0.00 0.00 2.73
220 222 4.321008 CCACTAAACGTCAGTTCAGCTCTA 60.321 45.833 0.24 0.00 40.18 2.43
222 224 2.731976 CCACTAAACGTCAGTTCAGCTC 59.268 50.000 0.24 0.00 40.18 4.09
225 227 1.798813 GGCCACTAAACGTCAGTTCAG 59.201 52.381 0.00 0.00 40.18 3.02
233 235 0.690762 AGACCATGGCCACTAAACGT 59.309 50.000 8.16 0.00 0.00 3.99
256 258 5.570844 GCCTAAACCATGACCTTTCACTCTA 60.571 44.000 0.00 0.00 33.38 2.43
268 270 2.107378 TGGTCACTTGCCTAAACCATGA 59.893 45.455 0.00 0.00 35.15 3.07
314 316 8.670135 TGCGTTGTACAAATTTAACTATAGCAT 58.330 29.630 10.51 0.00 0.00 3.79
343 345 4.693566 CCTATTTACATTGTCGTGTGGTGT 59.306 41.667 0.00 0.00 33.62 4.16
365 367 8.474831 AGTTAAGGGCACAAATATAAATGTTCC 58.525 33.333 0.00 2.61 32.87 3.62
367 369 8.188139 CGAGTTAAGGGCACAAATATAAATGTT 58.812 33.333 0.00 0.00 0.00 2.71
368 370 7.554835 TCGAGTTAAGGGCACAAATATAAATGT 59.445 33.333 0.00 0.00 0.00 2.71
370 372 8.403236 GTTCGAGTTAAGGGCACAAATATAAAT 58.597 33.333 0.00 0.00 0.00 1.40
373 375 5.818857 GGTTCGAGTTAAGGGCACAAATATA 59.181 40.000 0.00 0.00 0.00 0.86
374 376 4.638865 GGTTCGAGTTAAGGGCACAAATAT 59.361 41.667 0.00 0.00 0.00 1.28
376 378 2.817844 GGTTCGAGTTAAGGGCACAAAT 59.182 45.455 0.00 0.00 0.00 2.32
378 380 1.543871 GGGTTCGAGTTAAGGGCACAA 60.544 52.381 0.00 0.00 0.00 3.33
379 381 0.035739 GGGTTCGAGTTAAGGGCACA 59.964 55.000 0.00 0.00 0.00 4.57
380 382 0.035739 TGGGTTCGAGTTAAGGGCAC 59.964 55.000 0.00 0.00 0.00 5.01
382 384 0.323957 AGTGGGTTCGAGTTAAGGGC 59.676 55.000 0.00 0.00 0.00 5.19
383 385 2.830321 AGTAGTGGGTTCGAGTTAAGGG 59.170 50.000 0.00 0.00 0.00 3.95
384 386 3.508793 TGAGTAGTGGGTTCGAGTTAAGG 59.491 47.826 0.00 0.00 0.00 2.69
385 387 4.778534 TGAGTAGTGGGTTCGAGTTAAG 57.221 45.455 0.00 0.00 0.00 1.85
388 390 4.618920 ATTTGAGTAGTGGGTTCGAGTT 57.381 40.909 0.00 0.00 0.00 3.01
389 391 4.618920 AATTTGAGTAGTGGGTTCGAGT 57.381 40.909 0.00 0.00 0.00 4.18
390 392 4.378459 GCAAATTTGAGTAGTGGGTTCGAG 60.378 45.833 22.31 0.00 0.00 4.04
392 394 3.365969 GGCAAATTTGAGTAGTGGGTTCG 60.366 47.826 22.31 0.00 0.00 3.95
393 395 3.056821 GGGCAAATTTGAGTAGTGGGTTC 60.057 47.826 22.31 0.00 0.00 3.62
394 396 2.897326 GGGCAAATTTGAGTAGTGGGTT 59.103 45.455 22.31 0.00 0.00 4.11
395 397 2.525368 GGGCAAATTTGAGTAGTGGGT 58.475 47.619 22.31 0.00 0.00 4.51
396 398 1.824852 GGGGCAAATTTGAGTAGTGGG 59.175 52.381 22.31 0.00 0.00 4.61
397 399 2.807676 AGGGGCAAATTTGAGTAGTGG 58.192 47.619 22.31 0.00 0.00 4.00
398 400 6.530019 AATTAGGGGCAAATTTGAGTAGTG 57.470 37.500 22.31 0.00 0.00 2.74
399 401 7.553504 AAAATTAGGGGCAAATTTGAGTAGT 57.446 32.000 22.31 4.31 36.81 2.73
400 402 9.936759 TTTAAAATTAGGGGCAAATTTGAGTAG 57.063 29.630 22.31 0.00 36.81 2.57
401 403 9.936759 CTTTAAAATTAGGGGCAAATTTGAGTA 57.063 29.630 22.31 4.05 36.81 2.59
402 404 7.390440 GCTTTAAAATTAGGGGCAAATTTGAGT 59.610 33.333 22.31 4.99 36.81 3.41
403 405 7.390162 TGCTTTAAAATTAGGGGCAAATTTGAG 59.610 33.333 22.31 5.95 36.81 3.02
405 407 7.446001 TGCTTTAAAATTAGGGGCAAATTTG 57.554 32.000 14.03 14.03 36.81 2.32
406 408 7.362834 GCATGCTTTAAAATTAGGGGCAAATTT 60.363 33.333 11.37 0.00 37.98 1.82
407 409 6.095300 GCATGCTTTAAAATTAGGGGCAAATT 59.905 34.615 11.37 0.00 0.00 1.82
408 410 5.589855 GCATGCTTTAAAATTAGGGGCAAAT 59.410 36.000 11.37 0.00 0.00 2.32
410 412 4.224818 AGCATGCTTTAAAATTAGGGGCAA 59.775 37.500 16.30 0.00 0.00 4.52
412 414 4.406648 AGCATGCTTTAAAATTAGGGGC 57.593 40.909 16.30 0.00 0.00 5.80
413 415 8.962884 ATTTAAGCATGCTTTAAAATTAGGGG 57.037 30.769 35.99 0.00 37.47 4.79
419 421 7.362834 GGGGCAAATTTAAGCATGCTTTAAAAT 60.363 33.333 35.99 29.78 38.79 1.82
424 426 3.009363 AGGGGCAAATTTAAGCATGCTTT 59.991 39.130 35.99 17.52 38.79 3.51
425 427 2.573009 AGGGGCAAATTTAAGCATGCTT 59.427 40.909 33.70 33.70 38.79 3.91
427 429 2.696989 AGGGGCAAATTTAAGCATGC 57.303 45.000 10.51 10.51 38.06 4.06
428 430 7.336427 TCAAAATTAGGGGCAAATTTAAGCATG 59.664 33.333 3.25 0.00 35.91 4.06
429 431 7.401246 TCAAAATTAGGGGCAAATTTAAGCAT 58.599 30.769 3.25 0.00 35.91 3.79
435 437 5.629125 TGCTTCAAAATTAGGGGCAAATTT 58.371 33.333 0.00 0.00 37.98 1.82
436 438 5.240013 TGCTTCAAAATTAGGGGCAAATT 57.760 34.783 0.00 0.00 0.00 1.82
438 440 4.577875 CATGCTTCAAAATTAGGGGCAAA 58.422 39.130 0.00 0.00 0.00 3.68
439 441 3.619487 GCATGCTTCAAAATTAGGGGCAA 60.619 43.478 11.37 0.00 0.00 4.52
441 443 2.169144 AGCATGCTTCAAAATTAGGGGC 59.831 45.455 16.30 0.00 0.00 5.80
442 444 3.448301 TGAGCATGCTTCAAAATTAGGGG 59.552 43.478 23.61 0.00 0.00 4.79
445 447 7.480542 GCAAATTTGAGCATGCTTCAAAATTAG 59.519 33.333 30.86 24.78 37.00 1.73
446 448 7.299586 GCAAATTTGAGCATGCTTCAAAATTA 58.700 30.769 30.86 18.92 37.00 1.40
447 449 6.146898 GCAAATTTGAGCATGCTTCAAAATT 58.853 32.000 30.86 28.98 37.00 1.82
449 451 4.318903 CGCAAATTTGAGCATGCTTCAAAA 60.319 37.500 30.86 25.81 37.00 2.44
450 452 3.184783 CGCAAATTTGAGCATGCTTCAAA 59.815 39.130 30.07 30.07 37.69 2.69
461 463 1.514873 GCGGAGGCGCAAATTTGAG 60.515 57.895 22.31 19.32 34.62 3.02
462 464 2.566010 GCGGAGGCGCAAATTTGA 59.434 55.556 22.31 0.00 34.62 2.69
473 475 2.403252 AGTTCAACTAATGGCGGAGG 57.597 50.000 0.00 0.00 0.00 4.30
474 476 6.513180 TCTATAAGTTCAACTAATGGCGGAG 58.487 40.000 0.00 0.00 0.00 4.63
476 478 7.548196 TTTCTATAAGTTCAACTAATGGCGG 57.452 36.000 0.00 0.00 0.00 6.13
484 486 7.985752 CGGAAGGGTATTTCTATAAGTTCAACT 59.014 37.037 0.00 0.00 0.00 3.16
485 487 7.767659 ACGGAAGGGTATTTCTATAAGTTCAAC 59.232 37.037 0.00 0.00 0.00 3.18
486 488 7.767198 CACGGAAGGGTATTTCTATAAGTTCAA 59.233 37.037 0.00 0.00 0.00 2.69
487 489 7.270047 CACGGAAGGGTATTTCTATAAGTTCA 58.730 38.462 0.00 0.00 0.00 3.18
488 490 6.202379 GCACGGAAGGGTATTTCTATAAGTTC 59.798 42.308 0.00 0.00 36.38 3.01
489 491 6.053650 GCACGGAAGGGTATTTCTATAAGTT 58.946 40.000 0.00 0.00 36.38 2.66
490 492 5.454329 GGCACGGAAGGGTATTTCTATAAGT 60.454 44.000 0.00 0.00 36.38 2.24
491 493 4.995487 GGCACGGAAGGGTATTTCTATAAG 59.005 45.833 0.00 0.00 36.38 1.73
492 494 4.964593 GGCACGGAAGGGTATTTCTATAA 58.035 43.478 0.00 0.00 36.38 0.98
493 495 4.612264 GGCACGGAAGGGTATTTCTATA 57.388 45.455 0.00 0.00 36.38 1.31
494 496 3.487120 GGCACGGAAGGGTATTTCTAT 57.513 47.619 0.00 0.00 36.38 1.98
495 497 2.994186 GGCACGGAAGGGTATTTCTA 57.006 50.000 0.00 0.00 36.38 2.10
496 498 3.875865 GGCACGGAAGGGTATTTCT 57.124 52.632 0.00 0.00 36.38 2.52
515 517 0.591659 GGCTTTGACTGGACGGAAAC 59.408 55.000 0.00 0.00 0.00 2.78
516 518 0.882927 CGGCTTTGACTGGACGGAAA 60.883 55.000 0.00 0.00 0.00 3.13
517 519 1.301401 CGGCTTTGACTGGACGGAA 60.301 57.895 0.00 0.00 0.00 4.30
518 520 2.035237 AACGGCTTTGACTGGACGGA 62.035 55.000 0.00 0.00 38.41 4.69
519 521 1.164041 AAACGGCTTTGACTGGACGG 61.164 55.000 0.00 0.00 38.41 4.79
520 522 0.041312 CAAACGGCTTTGACTGGACG 60.041 55.000 4.14 0.00 39.43 4.79
521 523 1.305201 TCAAACGGCTTTGACTGGAC 58.695 50.000 7.67 0.00 40.76 4.02
522 524 3.790691 TCAAACGGCTTTGACTGGA 57.209 47.368 7.67 0.00 40.76 3.86
527 529 2.031258 TGACAGTCAAACGGCTTTGA 57.969 45.000 0.00 7.67 42.93 2.69
528 530 3.003689 AGAATGACAGTCAAACGGCTTTG 59.996 43.478 7.50 3.86 38.56 2.77
529 531 3.003689 CAGAATGACAGTCAAACGGCTTT 59.996 43.478 7.50 0.00 39.69 3.51
530 532 2.549754 CAGAATGACAGTCAAACGGCTT 59.450 45.455 7.50 0.00 39.69 4.35
531 533 2.146342 CAGAATGACAGTCAAACGGCT 58.854 47.619 7.50 0.00 39.69 5.52
532 534 1.197721 CCAGAATGACAGTCAAACGGC 59.802 52.381 7.50 0.00 39.69 5.68
533 535 1.197721 GCCAGAATGACAGTCAAACGG 59.802 52.381 7.50 7.26 39.69 4.44
534 536 1.197721 GGCCAGAATGACAGTCAAACG 59.802 52.381 7.50 0.00 39.69 3.60
535 537 1.197721 CGGCCAGAATGACAGTCAAAC 59.802 52.381 7.50 4.85 39.69 2.93
536 538 1.202758 ACGGCCAGAATGACAGTCAAA 60.203 47.619 7.50 0.00 39.69 2.69
537 539 0.396435 ACGGCCAGAATGACAGTCAA 59.604 50.000 7.50 0.00 39.69 3.18
538 540 0.396435 AACGGCCAGAATGACAGTCA 59.604 50.000 5.50 5.50 39.69 3.41
539 541 1.464997 GAAACGGCCAGAATGACAGTC 59.535 52.381 2.24 0.00 39.69 3.51
540 542 1.072331 AGAAACGGCCAGAATGACAGT 59.928 47.619 2.24 0.00 39.69 3.55
541 543 1.813513 AGAAACGGCCAGAATGACAG 58.186 50.000 2.24 0.00 39.69 3.51
542 544 2.270352 AAGAAACGGCCAGAATGACA 57.730 45.000 2.24 0.00 39.69 3.58
543 545 2.552315 TCAAAGAAACGGCCAGAATGAC 59.448 45.455 2.24 0.00 39.69 3.06
544 546 2.552315 GTCAAAGAAACGGCCAGAATGA 59.448 45.455 2.24 0.00 39.69 2.57
545 547 2.293122 TGTCAAAGAAACGGCCAGAATG 59.707 45.455 2.24 0.00 0.00 2.67
546 548 2.582052 TGTCAAAGAAACGGCCAGAAT 58.418 42.857 2.24 0.00 0.00 2.40
547 549 2.045561 TGTCAAAGAAACGGCCAGAA 57.954 45.000 2.24 0.00 0.00 3.02
548 550 2.270352 ATGTCAAAGAAACGGCCAGA 57.730 45.000 2.24 0.00 0.00 3.86
549 551 3.369546 AAATGTCAAAGAAACGGCCAG 57.630 42.857 2.24 0.00 0.00 4.85
550 552 3.810310 AAAATGTCAAAGAAACGGCCA 57.190 38.095 2.24 0.00 0.00 5.36
551 553 3.303066 GCAAAAATGTCAAAGAAACGGCC 60.303 43.478 0.00 0.00 0.00 6.13
552 554 3.303066 GGCAAAAATGTCAAAGAAACGGC 60.303 43.478 0.00 0.00 0.00 5.68
553 555 3.868077 TGGCAAAAATGTCAAAGAAACGG 59.132 39.130 0.00 0.00 0.00 4.44
554 556 5.655893 ATGGCAAAAATGTCAAAGAAACG 57.344 34.783 0.00 0.00 0.00 3.60
555 557 6.784176 ACAATGGCAAAAATGTCAAAGAAAC 58.216 32.000 0.00 0.00 0.00 2.78
563 565 5.697633 ACATTGAGACAATGGCAAAAATGTC 59.302 36.000 22.46 14.42 41.88 3.06
564 566 5.613329 ACATTGAGACAATGGCAAAAATGT 58.387 33.333 22.46 7.83 33.41 2.71
567 569 5.068855 TGAGACATTGAGACAATGGCAAAAA 59.931 36.000 25.38 10.17 38.12 1.94
576 578 5.070446 ACCAGTAAGTGAGACATTGAGACAA 59.930 40.000 0.00 0.00 0.00 3.18
577 579 4.588951 ACCAGTAAGTGAGACATTGAGACA 59.411 41.667 0.00 0.00 0.00 3.41
579 581 4.021104 CCACCAGTAAGTGAGACATTGAGA 60.021 45.833 0.00 0.00 40.34 3.27
580 582 4.248859 CCACCAGTAAGTGAGACATTGAG 58.751 47.826 0.00 0.00 40.34 3.02
581 583 3.007940 CCCACCAGTAAGTGAGACATTGA 59.992 47.826 0.00 0.00 40.34 2.57
582 584 3.338249 CCCACCAGTAAGTGAGACATTG 58.662 50.000 0.00 0.00 40.34 2.82
583 585 2.305927 CCCCACCAGTAAGTGAGACATT 59.694 50.000 0.00 0.00 40.34 2.71
585 587 1.348064 CCCCACCAGTAAGTGAGACA 58.652 55.000 0.00 0.00 40.34 3.41
586 588 0.036294 GCCCCACCAGTAAGTGAGAC 60.036 60.000 0.00 0.00 40.34 3.36
587 589 1.198759 GGCCCCACCAGTAAGTGAGA 61.199 60.000 0.00 0.00 40.34 3.27
588 590 1.299976 GGCCCCACCAGTAAGTGAG 59.700 63.158 0.00 0.00 40.34 3.51
589 591 2.228480 GGGCCCCACCAGTAAGTGA 61.228 63.158 12.23 0.00 42.05 3.41
590 592 2.355115 GGGCCCCACCAGTAAGTG 59.645 66.667 12.23 0.00 42.05 3.16
591 593 2.121689 TGGGCCCCACCAGTAAGT 60.122 61.111 22.27 0.00 42.05 2.24
600 602 4.405756 TTTATTTTTAGAGTGGGCCCCA 57.594 40.909 22.27 0.00 0.00 4.96
601 603 5.748670 TTTTTATTTTTAGAGTGGGCCCC 57.251 39.130 22.27 11.17 0.00 5.80
632 634 2.289072 CCCACCTGTAAGTGTGTGAGAG 60.289 54.545 0.00 0.00 34.59 3.20
633 635 1.691976 CCCACCTGTAAGTGTGTGAGA 59.308 52.381 0.00 0.00 34.59 3.27
634 636 1.270839 CCCCACCTGTAAGTGTGTGAG 60.271 57.143 0.00 0.00 34.59 3.51
635 637 0.762418 CCCCACCTGTAAGTGTGTGA 59.238 55.000 0.00 0.00 34.59 3.58
636 638 0.889186 GCCCCACCTGTAAGTGTGTG 60.889 60.000 0.00 0.00 34.59 3.82
637 639 1.454539 GCCCCACCTGTAAGTGTGT 59.545 57.895 0.00 0.00 34.59 3.72
638 640 1.671054 CGCCCCACCTGTAAGTGTG 60.671 63.158 0.00 0.00 35.93 3.82
639 641 2.747686 CGCCCCACCTGTAAGTGT 59.252 61.111 0.00 0.00 35.93 3.55
641 643 4.388499 CGCGCCCCACCTGTAAGT 62.388 66.667 0.00 0.00 0.00 2.24
642 644 4.388499 ACGCGCCCCACCTGTAAG 62.388 66.667 5.73 0.00 0.00 2.34
650 652 2.744318 CAATACACACGCGCCCCA 60.744 61.111 5.73 0.00 0.00 4.96
651 653 1.020333 TAACAATACACACGCGCCCC 61.020 55.000 5.73 0.00 0.00 5.80
653 655 1.661617 TCATAACAATACACACGCGCC 59.338 47.619 5.73 0.00 0.00 6.53
655 657 5.137524 TCATTCATAACAATACACACGCG 57.862 39.130 3.53 3.53 0.00 6.01
656 658 5.959527 CACTCATTCATAACAATACACACGC 59.040 40.000 0.00 0.00 0.00 5.34
657 659 7.060600 ACACTCATTCATAACAATACACACG 57.939 36.000 0.00 0.00 0.00 4.49
659 661 9.665719 ACATACACTCATTCATAACAATACACA 57.334 29.630 0.00 0.00 0.00 3.72
695 1499 9.526713 CCTCATATATAAGCACATACACTCATC 57.473 37.037 0.00 0.00 0.00 2.92
696 1500 9.040259 ACCTCATATATAAGCACATACACTCAT 57.960 33.333 0.00 0.00 0.00 2.90
699 1503 9.094578 AGAACCTCATATATAAGCACATACACT 57.905 33.333 0.00 0.00 0.00 3.55
716 1520 9.930693 CTGTTACTAGTTTTTCTAGAACCTCAT 57.069 33.333 4.18 0.00 46.53 2.90
764 1568 1.589716 AAGATTGACTTGCCGCCAGC 61.590 55.000 0.00 0.00 44.14 4.85
765 1569 0.449388 GAAGATTGACTTGCCGCCAG 59.551 55.000 0.00 0.00 39.13 4.85
766 1570 0.036732 AGAAGATTGACTTGCCGCCA 59.963 50.000 0.00 0.00 39.13 5.69
767 1571 2.024176 TAGAAGATTGACTTGCCGCC 57.976 50.000 0.00 0.00 39.13 6.13
768 1572 3.462021 AGATAGAAGATTGACTTGCCGC 58.538 45.455 0.00 0.00 39.13 6.53
769 1573 4.509600 GGAAGATAGAAGATTGACTTGCCG 59.490 45.833 0.00 0.00 39.13 5.69
770 1574 4.819088 GGGAAGATAGAAGATTGACTTGCC 59.181 45.833 0.00 0.00 39.13 4.52
813 1987 7.837863 TGCGTCCCTTCTTATATAAAGATAGG 58.162 38.462 0.00 1.79 0.00 2.57
827 2001 3.710722 CCTGCCTGCGTCCCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
828 2002 2.932130 GATCCTGCCTGCGTCCCTTC 62.932 65.000 0.00 0.00 0.00 3.46
832 2333 3.665675 AACGATCCTGCCTGCGTCC 62.666 63.158 0.00 0.00 35.74 4.79
868 2369 8.142551 TCTTTTATAAAGATAGAAGGTCGGCTC 58.857 37.037 0.00 0.00 32.85 4.70
870 2371 8.658499 TTCTTTTATAAAGATAGAAGGTCGGC 57.342 34.615 6.70 0.00 32.85 5.54
886 2387 3.840468 TGCGTGCGTCTCTTCTTTTATA 58.160 40.909 0.00 0.00 0.00 0.98
890 2391 0.946221 CCTGCGTGCGTCTCTTCTTT 60.946 55.000 0.00 0.00 0.00 2.52
958 2464 4.025401 CCAACGCGACCAACAGCC 62.025 66.667 15.93 0.00 0.00 4.85
960 2466 2.935955 GACCAACGCGACCAACAG 59.064 61.111 15.93 0.00 0.00 3.16
995 2519 4.713814 AGGAAGAGACTGCTTACATGATGA 59.286 41.667 0.00 0.00 30.85 2.92
1012 2536 3.320610 AAGGAGATCGATGGAGGAAGA 57.679 47.619 0.54 0.00 0.00 2.87
1046 2575 0.109319 CCTAACAATTGCACCCACGC 60.109 55.000 5.05 0.00 0.00 5.34
1047 2576 0.525761 CCCTAACAATTGCACCCACG 59.474 55.000 5.05 0.00 0.00 4.94
1048 2577 1.627864 ACCCTAACAATTGCACCCAC 58.372 50.000 5.05 0.00 0.00 4.61
1051 2580 3.306019 CCAGAAACCCTAACAATTGCACC 60.306 47.826 5.05 0.00 0.00 5.01
1053 2582 3.571590 ACCAGAAACCCTAACAATTGCA 58.428 40.909 5.05 0.00 0.00 4.08
1109 2644 8.885722 ACAGTACTTGTGTTTATCGAAAGAAAA 58.114 29.630 0.00 0.00 40.88 2.29
1133 2675 5.186215 TCGAAATCCATACTGTAGTGGAACA 59.814 40.000 17.13 2.71 46.78 3.18
1135 2677 5.925506 TCGAAATCCATACTGTAGTGGAA 57.074 39.130 17.13 4.43 46.78 3.53
1136 2678 8.813765 TCGAATCGAAATCCATACTGTAGTGGA 61.814 40.741 1.57 16.15 39.84 4.02
1138 2680 6.142480 GTCGAATCGAAATCCATACTGTAGTG 59.858 42.308 7.01 0.00 37.72 2.74
1166 2715 1.691482 CGGGAAGAGGAATAGGGGTCA 60.691 57.143 0.00 0.00 0.00 4.02
1167 2716 1.049402 CGGGAAGAGGAATAGGGGTC 58.951 60.000 0.00 0.00 0.00 4.46
1168 2717 0.640495 TCGGGAAGAGGAATAGGGGT 59.360 55.000 0.00 0.00 0.00 4.95
1169 2718 1.343069 CTCGGGAAGAGGAATAGGGG 58.657 60.000 0.00 0.00 43.20 4.79
1179 2728 1.469335 AAAGGCACGACTCGGGAAGA 61.469 55.000 4.44 0.00 28.17 2.87
1180 2729 0.245539 TAAAGGCACGACTCGGGAAG 59.754 55.000 4.44 0.00 28.17 3.46
1181 2730 0.899720 ATAAAGGCACGACTCGGGAA 59.100 50.000 4.44 0.00 28.17 3.97
1182 2731 0.899720 AATAAAGGCACGACTCGGGA 59.100 50.000 4.44 0.00 28.17 5.14
1183 2732 1.664151 GAAATAAAGGCACGACTCGGG 59.336 52.381 2.98 0.00 0.00 5.14
1184 2733 2.603560 GAGAAATAAAGGCACGACTCGG 59.396 50.000 2.98 0.00 0.00 4.63
1185 2734 3.304559 CAGAGAAATAAAGGCACGACTCG 59.695 47.826 0.00 0.00 0.00 4.18
1186 2735 3.619038 CCAGAGAAATAAAGGCACGACTC 59.381 47.826 0.00 0.00 0.00 3.36
1187 2736 3.260884 TCCAGAGAAATAAAGGCACGACT 59.739 43.478 0.00 0.00 0.00 4.18
1188 2737 3.596214 TCCAGAGAAATAAAGGCACGAC 58.404 45.455 0.00 0.00 0.00 4.34
1189 2738 3.973206 TCCAGAGAAATAAAGGCACGA 57.027 42.857 0.00 0.00 0.00 4.35
1190 2739 4.215399 TGTTTCCAGAGAAATAAAGGCACG 59.785 41.667 0.00 0.00 43.67 5.34
1191 2740 5.705609 TGTTTCCAGAGAAATAAAGGCAC 57.294 39.130 0.00 0.00 43.67 5.01
1192 2741 7.175104 ACTATGTTTCCAGAGAAATAAAGGCA 58.825 34.615 0.00 0.00 43.67 4.75
1193 2742 7.631717 ACTATGTTTCCAGAGAAATAAAGGC 57.368 36.000 0.00 0.00 43.67 4.35
1199 2748 9.838339 AAATCGATACTATGTTTCCAGAGAAAT 57.162 29.630 0.00 0.00 43.67 2.17
1200 2749 9.098355 CAAATCGATACTATGTTTCCAGAGAAA 57.902 33.333 0.00 0.00 39.70 2.52
1201 2750 7.710907 CCAAATCGATACTATGTTTCCAGAGAA 59.289 37.037 0.00 0.00 34.02 2.87
1202 2751 7.069455 TCCAAATCGATACTATGTTTCCAGAGA 59.931 37.037 0.00 0.00 34.02 3.10
1203 2752 7.210174 TCCAAATCGATACTATGTTTCCAGAG 58.790 38.462 0.00 0.00 35.99 3.35
1204 2753 7.119709 TCCAAATCGATACTATGTTTCCAGA 57.880 36.000 0.00 0.00 0.00 3.86
1205 2754 7.969536 ATCCAAATCGATACTATGTTTCCAG 57.030 36.000 0.00 0.00 0.00 3.86
1206 2755 7.170828 CGAATCCAAATCGATACTATGTTTCCA 59.829 37.037 0.00 0.00 42.76 3.53
1207 2756 7.384115 TCGAATCCAAATCGATACTATGTTTCC 59.616 37.037 0.00 0.00 43.76 3.13
1208 2757 8.294341 TCGAATCCAAATCGATACTATGTTTC 57.706 34.615 0.00 1.96 43.76 2.78
1209 2758 8.141909 TCTCGAATCCAAATCGATACTATGTTT 58.858 33.333 0.00 0.00 46.98 2.83
1210 2759 7.658261 TCTCGAATCCAAATCGATACTATGTT 58.342 34.615 0.00 0.00 46.98 2.71
1211 2760 7.215719 TCTCGAATCCAAATCGATACTATGT 57.784 36.000 0.00 0.00 46.98 2.29
1212 2761 7.970614 TCATCTCGAATCCAAATCGATACTATG 59.029 37.037 0.00 0.00 46.98 2.23
1248 2797 9.651913 ACTCTTTTCATTGTTTTTGTGTTGTAT 57.348 25.926 0.00 0.00 0.00 2.29
1249 2798 9.134734 GACTCTTTTCATTGTTTTTGTGTTGTA 57.865 29.630 0.00 0.00 0.00 2.41
1250 2799 7.148820 CGACTCTTTTCATTGTTTTTGTGTTGT 60.149 33.333 0.00 0.00 0.00 3.32
1251 2800 7.166168 CGACTCTTTTCATTGTTTTTGTGTTG 58.834 34.615 0.00 0.00 0.00 3.33
1252 2801 6.310224 CCGACTCTTTTCATTGTTTTTGTGTT 59.690 34.615 0.00 0.00 0.00 3.32
1256 2816 4.209080 GCCCGACTCTTTTCATTGTTTTTG 59.791 41.667 0.00 0.00 0.00 2.44
1257 2817 4.368315 GCCCGACTCTTTTCATTGTTTTT 58.632 39.130 0.00 0.00 0.00 1.94
1260 2820 1.535462 CGCCCGACTCTTTTCATTGTT 59.465 47.619 0.00 0.00 0.00 2.83
1278 2838 4.479993 AGGCAGGCATCAGGTCGC 62.480 66.667 0.00 0.00 0.00 5.19
1279 2839 2.202987 GAGGCAGGCATCAGGTCG 60.203 66.667 0.45 0.00 0.00 4.79
1280 2840 2.191641 GGAGGCAGGCATCAGGTC 59.808 66.667 8.27 0.00 0.00 3.85
1282 2842 2.509916 GAGGAGGCAGGCATCAGG 59.490 66.667 8.27 0.00 0.00 3.86
1283 2843 0.762082 TAGGAGGAGGCAGGCATCAG 60.762 60.000 8.27 0.00 0.00 2.90
1284 2844 0.104777 ATAGGAGGAGGCAGGCATCA 60.105 55.000 8.27 0.00 0.00 3.07
1285 2845 0.324285 CATAGGAGGAGGCAGGCATC 59.676 60.000 0.00 0.00 0.00 3.91
1286 2846 1.132554 CCATAGGAGGAGGCAGGCAT 61.133 60.000 0.00 0.00 0.00 4.40
1287 2847 1.767672 CCATAGGAGGAGGCAGGCA 60.768 63.158 0.00 0.00 0.00 4.75
1289 2849 1.511613 TTTCCATAGGAGGAGGCAGG 58.488 55.000 0.00 0.00 39.25 4.85
1291 2851 2.975489 GAGATTTCCATAGGAGGAGGCA 59.025 50.000 0.00 0.00 39.25 4.75
1292 2852 2.304470 GGAGATTTCCATAGGAGGAGGC 59.696 54.545 0.00 0.00 43.45 4.70
1304 2864 2.162408 CGGAAGTTGCTTGGAGATTTCC 59.838 50.000 0.00 0.00 44.31 3.13
1305 2865 2.414691 GCGGAAGTTGCTTGGAGATTTC 60.415 50.000 0.00 0.00 0.00 2.17
1311 2871 2.668212 CGGCGGAAGTTGCTTGGA 60.668 61.111 0.00 0.00 0.00 3.53
1313 2873 4.404654 GGCGGCGGAAGTTGCTTG 62.405 66.667 9.78 0.00 34.51 4.01
1339 2981 4.512914 GCAGGCATCAGGTCCCCC 62.513 72.222 0.00 0.00 0.00 5.40
1341 2983 3.412624 GAGGCAGGCATCAGGTCCC 62.413 68.421 0.45 0.00 0.00 4.46
1347 2989 0.104777 ATAGGAGGAGGCAGGCATCA 60.105 55.000 8.27 0.00 0.00 3.07
1348 2990 0.324285 CATAGGAGGAGGCAGGCATC 59.676 60.000 0.00 0.00 0.00 3.91
1349 2991 1.132554 CCATAGGAGGAGGCAGGCAT 61.133 60.000 0.00 0.00 0.00 4.40
1351 2993 1.056700 TTCCATAGGAGGAGGCAGGC 61.057 60.000 0.00 0.00 39.25 4.85
1364 3098 4.526970 GAAGTTGCTGGGAGATTTCCATA 58.473 43.478 4.42 0.00 45.98 2.74
1472 3206 0.762082 TAGGAGGAGGCAGGCATCAG 60.762 60.000 8.27 0.00 0.00 2.90
1712 3588 1.225745 GTTCGACGAATTGCCGCAG 60.226 57.895 14.27 0.00 0.00 5.18
1920 3809 4.007644 CCTGCTGGACTGCCGACA 62.008 66.667 2.92 0.00 36.79 4.35
1965 4012 1.737236 CAGCAACGCAGCTATAACCAA 59.263 47.619 1.56 0.00 44.54 3.67
1970 4017 1.999735 GACAACAGCAACGCAGCTATA 59.000 47.619 1.56 0.00 44.54 1.31
1987 4034 0.956902 ATCGCTTGCTGCACATGACA 60.957 50.000 0.00 0.00 43.06 3.58
2020 4067 4.095483 GTCCAACAATACTTCCTGCATCAG 59.905 45.833 0.00 0.00 0.00 2.90
2060 4107 1.004440 GCCTCGACCTATCCATGCC 60.004 63.158 0.00 0.00 0.00 4.40
2315 4365 8.794335 AGATGTAATGAAGACTAAAACCTTCC 57.206 34.615 0.00 0.00 38.33 3.46
2429 4481 3.982576 AAGGAAACACCACGATTCAAC 57.017 42.857 0.00 0.00 42.04 3.18
2529 4581 3.318313 AGGAAGAGGAAGTCTCCAACAA 58.682 45.455 0.00 0.00 45.24 2.83
2625 4677 3.006110 CGGTTGTCTCAAGTTACCTACCA 59.994 47.826 0.00 0.00 0.00 3.25
2783 4844 2.002586 TGAGAAATCTACAGCTTGCGC 58.997 47.619 0.00 0.00 0.00 6.09
2871 4933 3.379372 GCGCCGTATTCTCAGGGTATATA 59.621 47.826 0.00 0.00 0.00 0.86
3177 6106 6.992715 AGCACCATTATACAAGACAGATAACC 59.007 38.462 0.00 0.00 0.00 2.85
3194 6123 7.097834 GTCTAGTCAGTAACTAAAGCACCATT 58.902 38.462 0.00 0.00 39.98 3.16
3195 6124 6.210784 TGTCTAGTCAGTAACTAAAGCACCAT 59.789 38.462 0.00 0.00 39.98 3.55
3196 6125 5.537295 TGTCTAGTCAGTAACTAAAGCACCA 59.463 40.000 0.00 0.00 39.98 4.17
3197 6126 5.862860 GTGTCTAGTCAGTAACTAAAGCACC 59.137 44.000 0.00 0.00 39.98 5.01
3199 6128 6.644248 TGTGTCTAGTCAGTAACTAAAGCA 57.356 37.500 0.00 0.00 39.98 3.91
3413 6362 1.444933 ATCACAAGACCAGTGGGGAA 58.555 50.000 15.21 0.00 41.15 3.97
3415 6364 3.433306 TTTATCACAAGACCAGTGGGG 57.567 47.619 15.21 2.42 44.81 4.96
3586 6795 5.870978 TGTGAACACACACAGATATGAGATG 59.129 40.000 3.39 0.00 44.29 2.90
3619 6828 5.502089 TTAACTTCAGAAATACCCGGGAA 57.498 39.130 32.02 7.23 0.00 3.97
3620 6829 5.493809 CTTTAACTTCAGAAATACCCGGGA 58.506 41.667 32.02 11.89 0.00 5.14
3668 6877 9.667107 TCAAGCTATGCTAACTATTTTAACAGT 57.333 29.630 0.00 0.00 38.25 3.55
3755 6964 5.294552 GGCTAAAAGCTATCCAACTGTACAG 59.705 44.000 21.44 21.44 41.99 2.74
3924 7162 4.787563 GCGCTCATCACATTCTTTGTATGG 60.788 45.833 0.00 0.00 36.57 2.74
3925 7163 4.034858 AGCGCTCATCACATTCTTTGTATG 59.965 41.667 2.64 0.00 36.57 2.39
4108 8297 9.694137 AGAGGATTGTAAAGTATTAGCGTATTC 57.306 33.333 0.00 0.00 0.00 1.75
4247 8436 0.959372 CTGGAGACCCGTCGTACAGT 60.959 60.000 0.00 0.00 34.29 3.55
4317 8512 1.573376 AGAGTGAGAGAGCATACCCCT 59.427 52.381 0.00 0.00 0.00 4.79
4361 8556 8.676401 TGAAACATGTATTTGATGACATTCGAT 58.324 29.630 0.00 0.00 34.01 3.59
4590 8968 3.389002 TGCAGATACAGGTGAGCACATAT 59.611 43.478 2.75 0.00 0.00 1.78
4692 9071 3.641437 TGCAAATGCTACAAACTGGAC 57.359 42.857 6.97 0.00 42.66 4.02
4750 9129 7.775093 AGGAGCACAAGCATTCAACTATTTATA 59.225 33.333 0.00 0.00 45.49 0.98
4767 9306 2.653726 ACATGAACAACAGGAGCACAA 58.346 42.857 0.00 0.00 34.19 3.33
4805 9344 7.456269 AGAGGATATTTTGGAGGATATTCGACT 59.544 37.037 0.00 0.00 0.00 4.18
4811 9350 7.741288 TGAAGGAGAGGATATTTTGGAGGATAT 59.259 37.037 0.00 0.00 0.00 1.63
4895 9437 9.705290 GATATGTTTCCAACAACAATACCTTTT 57.295 29.630 0.00 0.00 45.86 2.27
5180 9970 4.325028 TGATATGGAAATTGCATGCACC 57.675 40.909 22.58 18.80 29.08 5.01
5216 10641 2.492881 TGCATGCAGTTTCCAACATAGG 59.507 45.455 18.46 0.00 0.00 2.57
5290 10715 0.320334 TGGCGCTCGAAACTGAATGA 60.320 50.000 7.64 0.00 0.00 2.57
5291 10716 0.516877 TTGGCGCTCGAAACTGAATG 59.483 50.000 7.64 0.00 0.00 2.67
5328 10853 2.738643 GCTAGCATCAACGCTTAGGACA 60.739 50.000 10.63 0.00 43.56 4.02
5605 11133 8.415950 TCCTTGGCTAATTGATTTTCACTTTA 57.584 30.769 0.00 0.00 0.00 1.85
5617 11145 2.562298 TGGCTGTTTCCTTGGCTAATTG 59.438 45.455 0.00 0.00 0.00 2.32
5747 11275 4.735369 TGAGGCAACCTAGGAAATTTTGA 58.265 39.130 17.98 0.00 31.76 2.69
5875 11581 1.571955 TGAGTTGCTCTGCCCTGATA 58.428 50.000 0.00 0.00 0.00 2.15
5905 11616 9.363401 TCTTCATACTAGGTATTTTGCTAGCTA 57.637 33.333 17.23 5.31 32.09 3.32
5997 11709 4.376225 AAATCCCTCCGTTTTAGTTGGA 57.624 40.909 0.00 0.00 0.00 3.53
6210 12047 0.253327 CCTTTCCTCCTTCCCTTCCG 59.747 60.000 0.00 0.00 0.00 4.30
6259 12096 0.108329 AGAAATGGTGCCCTACGTCG 60.108 55.000 0.00 0.00 0.00 5.12
6263 12100 2.093869 TGTCGTAGAAATGGTGCCCTAC 60.094 50.000 0.00 0.00 39.69 3.18
6264 12101 2.181125 TGTCGTAGAAATGGTGCCCTA 58.819 47.619 0.00 0.00 39.69 3.53
6265 12102 0.981183 TGTCGTAGAAATGGTGCCCT 59.019 50.000 0.00 0.00 39.69 5.19
6267 12104 2.423577 ACTTGTCGTAGAAATGGTGCC 58.576 47.619 0.00 0.00 39.69 5.01
6269 12106 6.455113 CGGAATTACTTGTCGTAGAAATGGTG 60.455 42.308 0.00 0.00 39.69 4.17
6270 12107 5.579511 CGGAATTACTTGTCGTAGAAATGGT 59.420 40.000 0.00 0.00 39.69 3.55
6271 12108 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
6272 12109 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
6274 12111 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
6275 12112 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
6277 12114 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
6279 12116 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
6280 12117 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
6281 12118 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6283 12120 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6285 12122 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6286 12123 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6287 12124 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6288 12125 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
6290 12127 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
6291 12128 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
6292 12129 0.669077 CATCTACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
6294 12131 4.218852 CCTTATCATCTACTCCCTCCGTTC 59.781 50.000 0.00 0.00 0.00 3.95
6296 12133 3.398292 TCCTTATCATCTACTCCCTCCGT 59.602 47.826 0.00 0.00 0.00 4.69
6297 12134 4.013728 CTCCTTATCATCTACTCCCTCCG 58.986 52.174 0.00 0.00 0.00 4.63
6298 12135 5.263872 TCTCCTTATCATCTACTCCCTCC 57.736 47.826 0.00 0.00 0.00 4.30
6301 12138 5.127031 GCTCATCTCCTTATCATCTACTCCC 59.873 48.000 0.00 0.00 0.00 4.30
6302 12139 5.163663 CGCTCATCTCCTTATCATCTACTCC 60.164 48.000 0.00 0.00 0.00 3.85
6303 12140 5.645929 TCGCTCATCTCCTTATCATCTACTC 59.354 44.000 0.00 0.00 0.00 2.59
6304 12141 5.565509 TCGCTCATCTCCTTATCATCTACT 58.434 41.667 0.00 0.00 0.00 2.57
6305 12142 5.645929 TCTCGCTCATCTCCTTATCATCTAC 59.354 44.000 0.00 0.00 0.00 2.59
6306 12143 5.810095 TCTCGCTCATCTCCTTATCATCTA 58.190 41.667 0.00 0.00 0.00 1.98
6307 12144 4.661222 TCTCGCTCATCTCCTTATCATCT 58.339 43.478 0.00 0.00 0.00 2.90
6308 12145 5.125257 TCATCTCGCTCATCTCCTTATCATC 59.875 44.000 0.00 0.00 0.00 2.92
6311 12148 5.384063 TTCATCTCGCTCATCTCCTTATC 57.616 43.478 0.00 0.00 0.00 1.75
6315 12152 3.030291 AGTTTCATCTCGCTCATCTCCT 58.970 45.455 0.00 0.00 0.00 3.69
6350 12213 4.530161 AGTAGTGTTCTGAAGATGGAAGCT 59.470 41.667 0.00 0.00 0.00 3.74
6351 12214 4.826556 AGTAGTGTTCTGAAGATGGAAGC 58.173 43.478 0.00 0.00 0.00 3.86
6352 12215 5.641209 CCAAGTAGTGTTCTGAAGATGGAAG 59.359 44.000 0.00 0.00 0.00 3.46
6353 12216 5.071788 ACCAAGTAGTGTTCTGAAGATGGAA 59.928 40.000 10.12 0.00 0.00 3.53
6370 12236 2.616634 TAACAACACGCCACCAAGTA 57.383 45.000 0.00 0.00 0.00 2.24
6462 12328 4.666253 CTGTGGGTGCCCTGGGTG 62.666 72.222 15.56 0.00 36.94 4.61
6477 12343 3.248171 GCGTCTTACGGCGAGCTG 61.248 66.667 16.62 1.84 42.82 4.24
6480 12346 2.789203 GCAAGCGTCTTACGGCGAG 61.789 63.158 16.62 0.25 42.82 5.03
6483 12349 3.849953 CGGCAAGCGTCTTACGGC 61.850 66.667 1.25 0.00 42.82 5.68
6502 12368 2.603560 GCCTCTCGTGGAGATTTTAACG 59.396 50.000 9.11 0.00 44.45 3.18
6574 12454 2.110213 ACACGAGCTTTTCCGCCA 59.890 55.556 0.00 0.00 0.00 5.69
6602 12482 2.520536 CCCGTCCCTGATGATCCCC 61.521 68.421 0.00 0.00 0.00 4.81
6619 12499 1.270625 TGTCCACCGTGACATCTTTCC 60.271 52.381 0.00 0.00 40.22 3.13
6621 12501 1.872237 CGTGTCCACCGTGACATCTTT 60.872 52.381 0.00 0.00 46.20 2.52
6632 12512 0.463116 ACTTGTCCAACGTGTCCACC 60.463 55.000 0.00 0.00 0.00 4.61
6642 12522 2.023673 CTTGCCTGTGAACTTGTCCAA 58.976 47.619 0.00 0.00 0.00 3.53
6658 12538 2.185004 TAGCTGGTCCTTGAACTTGC 57.815 50.000 0.00 0.00 0.00 4.01
6758 12698 3.659089 TTAGGCTTCCGTCGGCTGC 62.659 63.158 16.53 16.53 37.85 5.25
6759 12699 1.519455 CTTAGGCTTCCGTCGGCTG 60.519 63.158 6.34 2.52 37.85 4.85
6774 12714 4.992319 CCCAACAACGTAGATGACAACTTA 59.008 41.667 0.00 0.00 33.32 2.24
6784 12724 2.322658 AGGAACTCCCAACAACGTAGA 58.677 47.619 0.00 0.00 37.41 2.59
6823 12763 1.710809 ACACTGGGCCTAATGGAAAGT 59.289 47.619 4.53 0.00 34.57 2.66
6841 12781 6.592220 GGAAAGCAAAAACTAAAGAAACCACA 59.408 34.615 0.00 0.00 0.00 4.17
6846 12786 7.412455 CGCAAAGGAAAGCAAAAACTAAAGAAA 60.412 33.333 0.00 0.00 0.00 2.52
6893 12833 2.525368 ACCCAACCAACTAAGCAATCC 58.475 47.619 0.00 0.00 0.00 3.01
6900 12840 4.145807 CCACATACAACCCAACCAACTAA 58.854 43.478 0.00 0.00 0.00 2.24
6931 12871 1.606885 ATTGAACGGCAAGGCATGGG 61.607 55.000 0.00 0.00 40.42 4.00
6933 12873 0.244450 ACATTGAACGGCAAGGCATG 59.756 50.000 5.10 0.00 41.77 4.06
6935 12875 1.106351 ACACATTGAACGGCAAGGCA 61.106 50.000 5.10 0.00 41.77 4.75
7001 12941 0.965363 AATTTGCCCGCGGACATTCT 60.965 50.000 30.73 5.84 0.00 2.40
7031 12972 2.289444 TGTAGCACTAACTGTTGCCCTC 60.289 50.000 2.69 0.00 0.00 4.30
7043 12984 0.824109 AGGCAGCGATTGTAGCACTA 59.176 50.000 0.00 0.00 37.01 2.74
7056 12997 2.757917 AGGAGTCGAGGAGGCAGC 60.758 66.667 0.00 0.00 0.00 5.25
7067 13008 1.135731 CGAGCTGACACGAGGAGTC 59.864 63.158 0.00 0.00 36.55 3.36
7068 13009 2.983930 GCGAGCTGACACGAGGAGT 61.984 63.158 0.00 0.00 30.81 3.85
7074 13015 2.819117 TAAGCAGGCGAGCTGACACG 62.819 60.000 8.22 0.00 45.89 4.49
7094 13035 2.154854 TTGTCGAGCTTTGTCTCCTG 57.845 50.000 0.00 0.00 0.00 3.86
7180 13121 3.718210 CTAGTCCCGTTCGCTGGGC 62.718 68.421 1.91 0.00 46.92 5.36
7206 13147 9.046296 CACATTATCATCCCAAAGTAAGAGTAC 57.954 37.037 0.00 0.00 0.00 2.73
7228 13169 1.676678 CCCGGAGACATCGACCACAT 61.677 60.000 0.73 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.