Multiple sequence alignment - TraesCS1B01G298000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G298000 chr1B 100.000 8358 0 0 882 9239 518266723 518258366 0.000000e+00 15435.0
1 TraesCS1B01G298000 chr1B 96.751 831 23 3 2720 3550 338885454 338884628 0.000000e+00 1382.0
2 TraesCS1B01G298000 chr1B 100.000 457 0 0 9477 9933 518258128 518257672 0.000000e+00 845.0
3 TraesCS1B01G298000 chr1B 100.000 349 0 0 1 349 518267604 518267256 0.000000e+00 645.0
4 TraesCS1B01G298000 chr1D 97.244 4246 104 9 3549 7788 386125775 386121537 0.000000e+00 7180.0
5 TraesCS1B01G298000 chr1D 95.171 1843 52 12 882 2700 386127728 386125899 0.000000e+00 2876.0
6 TraesCS1B01G298000 chr1D 92.947 638 39 4 8604 9238 386120455 386119821 0.000000e+00 924.0
7 TraesCS1B01G298000 chr1D 95.575 452 12 4 9490 9933 386119840 386119389 0.000000e+00 717.0
8 TraesCS1B01G298000 chr1D 94.891 411 17 3 8119 8525 386120862 386120452 3.030000e-179 640.0
9 TraesCS1B01G298000 chr1D 94.371 302 12 3 53 349 386128086 386127785 9.090000e-125 459.0
10 TraesCS1B01G298000 chr1D 91.954 261 18 3 3583 3840 100462103 100461843 7.330000e-96 363.0
11 TraesCS1B01G298000 chr1D 91.905 210 13 2 7916 8121 386121116 386120907 3.510000e-74 291.0
12 TraesCS1B01G298000 chr1D 95.349 86 3 1 8522 8606 90208030 90207945 1.740000e-27 135.0
13 TraesCS1B01G298000 chr1D 94.318 88 4 1 8522 8608 277191224 277191137 6.260000e-27 134.0
14 TraesCS1B01G298000 chr1D 94.253 87 4 1 8522 8607 463165278 463165364 2.250000e-26 132.0
15 TraesCS1B01G298000 chr1D 92.473 93 4 3 8522 8611 243753383 243753291 8.100000e-26 130.0
16 TraesCS1B01G298000 chr1D 97.059 34 1 0 20 53 5546642 5546675 3.880000e-04 58.4
17 TraesCS1B01G298000 chr1A 97.024 4099 99 8 3695 7788 485564031 485559951 0.000000e+00 6872.0
18 TraesCS1B01G298000 chr1A 95.011 1844 51 11 882 2700 485566255 485564428 0.000000e+00 2857.0
19 TraesCS1B01G298000 chr1A 93.260 638 35 7 8604 9238 485558864 485558232 0.000000e+00 933.0
20 TraesCS1B01G298000 chr1A 95.122 410 16 3 8119 8525 485559269 485558861 2.340000e-180 643.0
21 TraesCS1B01G298000 chr1A 87.961 407 26 11 9488 9883 485558253 485557859 9.090000e-125 459.0
22 TraesCS1B01G298000 chr1A 91.722 302 8 2 53 344 485566604 485566310 4.320000e-108 403.0
23 TraesCS1B01G298000 chr1A 91.905 210 13 2 7916 8121 485559523 485559314 3.510000e-74 291.0
24 TraesCS1B01G298000 chr1A 96.226 53 2 0 1 53 448916990 448916938 4.940000e-13 87.9
25 TraesCS1B01G298000 chr1A 91.071 56 4 1 1 56 6637589 6637643 3.850000e-09 75.0
26 TraesCS1B01G298000 chr4A 96.809 846 22 4 2707 3552 690224252 690225092 0.000000e+00 1408.0
27 TraesCS1B01G298000 chr4A 92.803 264 15 4 3581 3840 211380218 211380481 7.280000e-101 379.0
28 TraesCS1B01G298000 chr4A 90.947 243 22 0 1279 1521 94762724 94762966 2.680000e-85 327.0
29 TraesCS1B01G298000 chr4A 98.113 53 1 0 1 53 664482240 664482188 1.060000e-14 93.5
30 TraesCS1B01G298000 chr4A 94.545 55 3 0 1 55 719050908 719050854 1.780000e-12 86.1
31 TraesCS1B01G298000 chr4A 92.727 55 4 0 1 55 93968791 93968737 8.270000e-11 80.5
32 TraesCS1B01G298000 chr4A 91.228 57 5 0 1 57 617674716 617674772 2.970000e-10 78.7
33 TraesCS1B01G298000 chr7B 97.002 834 22 2 2719 3552 588241988 588241158 0.000000e+00 1399.0
34 TraesCS1B01G298000 chr7B 91.954 261 18 3 3583 3840 173229521 173229781 7.330000e-96 363.0
35 TraesCS1B01G298000 chr7B 94.643 56 2 1 1 56 453748139 453748085 1.780000e-12 86.1
36 TraesCS1B01G298000 chr6B 96.999 833 22 3 2719 3550 663787619 663786789 0.000000e+00 1397.0
37 TraesCS1B01G298000 chr6B 83.965 343 37 13 7924 8251 233032071 233031732 7.490000e-81 313.0
38 TraesCS1B01G298000 chr6B 89.855 207 17 2 7135 7337 233033147 233032941 7.650000e-66 263.0
39 TraesCS1B01G298000 chr5B 96.992 831 21 3 2720 3550 167286056 167286882 0.000000e+00 1393.0
40 TraesCS1B01G298000 chr5B 96.296 837 24 5 2715 3551 75324267 75323438 0.000000e+00 1367.0
41 TraesCS1B01G298000 chr5B 96.283 834 27 2 2719 3552 440546913 440547742 0.000000e+00 1365.0
42 TraesCS1B01G298000 chr2B 96.655 837 22 5 2720 3554 699713031 699713863 0.000000e+00 1386.0
43 TraesCS1B01G298000 chr2B 96.631 831 25 2 2720 3550 197591406 197590579 0.000000e+00 1376.0
44 TraesCS1B01G298000 chr7A 89.881 840 61 8 1264 2102 134549240 134550056 0.000000e+00 1059.0
45 TraesCS1B01G298000 chr7A 96.154 52 2 0 1 52 18125328 18125277 1.780000e-12 86.1
46 TraesCS1B01G298000 chr3A 88.515 862 76 7 1242 2102 712620810 712621649 0.000000e+00 1022.0
47 TraesCS1B01G298000 chr3A 92.063 63 5 0 1 63 660902706 660902768 1.370000e-13 89.8
48 TraesCS1B01G298000 chr6D 84.091 792 99 18 7135 7910 134288652 134287872 0.000000e+00 739.0
49 TraesCS1B01G298000 chr6D 83.965 792 100 18 7135 7910 134693814 134693034 0.000000e+00 734.0
50 TraesCS1B01G298000 chr6D 83.954 349 38 13 7916 8251 134287553 134287210 1.610000e-82 318.0
51 TraesCS1B01G298000 chr6D 90.204 245 17 4 1279 1523 161148513 161148750 7.490000e-81 313.0
52 TraesCS1B01G298000 chr6D 83.871 341 38 12 7924 8251 134692708 134692372 9.690000e-80 309.0
53 TraesCS1B01G298000 chr6D 91.667 96 6 2 8521 8614 146072908 146072813 2.250000e-26 132.0
54 TraesCS1B01G298000 chr6D 93.023 86 4 2 8522 8606 134695711 134695795 3.770000e-24 124.0
55 TraesCS1B01G298000 chr6D 92.135 89 6 1 8518 8605 433443823 433443735 3.770000e-24 124.0
56 TraesCS1B01G298000 chr6D 94.643 56 3 0 1 56 38239793 38239738 4.940000e-13 87.9
57 TraesCS1B01G298000 chr6D 97.059 34 1 0 21 54 40058044 40058077 3.880000e-04 58.4
58 TraesCS1B01G298000 chr6A 83.692 791 104 17 7134 7910 175653249 175652470 0.000000e+00 723.0
59 TraesCS1B01G298000 chr6A 89.796 245 24 1 1279 1523 77889672 77889915 7.490000e-81 313.0
60 TraesCS1B01G298000 chr6A 89.388 245 25 1 1279 1523 78019190 78019433 3.480000e-79 307.0
61 TraesCS1B01G298000 chr6A 81.972 355 32 18 7924 8248 175652144 175651792 1.270000e-68 272.0
62 TraesCS1B01G298000 chr6A 96.154 52 2 0 1 52 77788130 77788181 1.780000e-12 86.1
63 TraesCS1B01G298000 chr6A 92.982 57 3 1 1 57 6393966 6394021 2.300000e-11 82.4
64 TraesCS1B01G298000 chr7D 92.692 260 16 3 3583 3840 552186593 552186335 1.220000e-98 372.0
65 TraesCS1B01G298000 chr7D 93.548 93 4 2 8522 8613 146050686 146050777 4.840000e-28 137.0
66 TraesCS1B01G298000 chr7D 91.753 97 6 2 8522 8616 519264630 519264534 6.260000e-27 134.0
67 TraesCS1B01G298000 chr7D 91.089 101 4 4 8522 8618 79628428 79628329 2.250000e-26 132.0
68 TraesCS1B01G298000 chr7D 89.130 46 2 3 15 59 214966016 214966059 5.000000e-03 54.7
69 TraesCS1B01G298000 chr2D 91.111 270 16 7 3577 3841 74146847 74147113 9.490000e-95 359.0
70 TraesCS1B01G298000 chr2D 92.632 95 6 1 8522 8615 601266141 601266047 1.740000e-27 135.0
71 TraesCS1B01G298000 chr2D 92.553 94 6 1 8522 8614 15682900 15682993 6.260000e-27 134.0
72 TraesCS1B01G298000 chr4D 91.288 264 20 3 3580 3840 114578954 114579217 3.410000e-94 357.0
73 TraesCS1B01G298000 chr4D 90.672 268 23 2 3575 3840 428482083 428481816 1.230000e-93 355.0
74 TraesCS1B01G298000 chr4D 94.565 92 4 1 8519 8609 213708325 213708416 3.740000e-29 141.0
75 TraesCS1B01G298000 chr4D 95.294 85 3 1 8522 8605 371601297 371601213 6.260000e-27 134.0
76 TraesCS1B01G298000 chr4D 95.294 85 3 1 8522 8605 489441040 489440956 6.260000e-27 134.0
77 TraesCS1B01G298000 chr4D 89.524 105 9 2 8509 8612 7759979 7759876 2.250000e-26 132.0
78 TraesCS1B01G298000 chr4D 87.273 110 8 6 8501 8607 186610485 186610379 4.870000e-23 121.0
79 TraesCS1B01G298000 chr4D 100.000 33 0 0 20 52 179924260 179924292 3.000000e-05 62.1
80 TraesCS1B01G298000 chr4D 90.909 44 1 3 15 57 213898412 213898453 1.000000e-03 56.5
81 TraesCS1B01G298000 chr5D 88.235 221 23 3 1286 1506 435121194 435121411 2.750000e-65 261.0
82 TraesCS1B01G298000 chr5D 94.382 89 3 2 8522 8609 111788644 111788731 1.740000e-27 135.0
83 TraesCS1B01G298000 chr5D 93.407 91 4 2 8522 8610 250069628 250069718 6.260000e-27 134.0
84 TraesCS1B01G298000 chr5D 91.579 95 7 1 8515 8608 455323324 455323418 8.100000e-26 130.0
85 TraesCS1B01G298000 chr5D 90.722 97 8 1 8522 8617 509559294 509559198 2.910000e-25 128.0
86 TraesCS1B01G298000 chr5D 92.857 56 4 0 5 60 3784510 3784455 2.300000e-11 82.4
87 TraesCS1B01G298000 chr5D 97.059 34 1 0 20 53 464322641 464322674 3.880000e-04 58.4
88 TraesCS1B01G298000 chr3D 95.652 92 2 2 8522 8611 271512667 271512576 8.040000e-31 147.0
89 TraesCS1B01G298000 chr3D 93.478 92 4 2 8522 8611 300775485 300775576 1.740000e-27 135.0
90 TraesCS1B01G298000 chr3D 100.000 31 0 0 26 56 116025811 116025781 3.880000e-04 58.4
91 TraesCS1B01G298000 chr2A 93.478 92 5 1 8515 8605 709027577 709027668 1.740000e-27 135.0
92 TraesCS1B01G298000 chr4B 91.753 97 6 2 8521 8615 342857160 342857064 6.260000e-27 134.0
93 TraesCS1B01G298000 chr4B 96.226 53 2 0 1 53 497109990 497109938 4.940000e-13 87.9
94 TraesCS1B01G298000 chr4B 86.792 53 7 0 1 53 569411214 569411266 1.080000e-04 60.2
95 TraesCS1B01G298000 chrUn 94.118 85 4 1 8522 8605 100223739 100223823 2.910000e-25 128.0
96 TraesCS1B01G298000 chrUn 93.182 88 5 1 8522 8608 320620153 320620066 2.910000e-25 128.0
97 TraesCS1B01G298000 chrUn 93.103 87 5 1 8522 8607 75308385 75308471 1.050000e-24 126.0
98 TraesCS1B01G298000 chrUn 93.103 87 5 1 8522 8607 242405295 242405209 1.050000e-24 126.0
99 TraesCS1B01G298000 chrUn 91.304 92 7 1 8522 8612 81299914 81300005 3.770000e-24 124.0
100 TraesCS1B01G298000 chrUn 90.426 94 8 1 8519 8611 41678324 41678417 1.350000e-23 122.0
101 TraesCS1B01G298000 chrUn 92.941 85 5 1 8522 8605 222975770 222975854 1.350000e-23 122.0
102 TraesCS1B01G298000 chrUn 92.941 85 5 1 8522 8605 303647904 303647988 1.350000e-23 122.0
103 TraesCS1B01G298000 chrUn 92.941 85 5 1 8522 8605 378270568 378270652 1.350000e-23 122.0
104 TraesCS1B01G298000 chrUn 92.045 88 6 1 8522 8608 447954346 447954259 1.350000e-23 122.0
105 TraesCS1B01G298000 chrUn 88.235 102 8 3 8522 8620 313026535 313026435 1.750000e-22 119.0
106 TraesCS1B01G298000 chr3B 96.226 53 2 0 1 53 335833705 335833757 4.940000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G298000 chr1B 518257672 518267604 9932 True 5641.666667 15435 100.000000 1 9933 3 chr1B.!!$R2 9932
1 TraesCS1B01G298000 chr1B 338884628 338885454 826 True 1382.000000 1382 96.751000 2720 3550 1 chr1B.!!$R1 830
2 TraesCS1B01G298000 chr1D 386119389 386128086 8697 True 1869.571429 7180 94.586286 53 9933 7 chr1D.!!$R5 9880
3 TraesCS1B01G298000 chr1A 485557859 485566604 8745 True 1779.714286 6872 93.143571 53 9883 7 chr1A.!!$R2 9830
4 TraesCS1B01G298000 chr4A 690224252 690225092 840 False 1408.000000 1408 96.809000 2707 3552 1 chr4A.!!$F4 845
5 TraesCS1B01G298000 chr7B 588241158 588241988 830 True 1399.000000 1399 97.002000 2719 3552 1 chr7B.!!$R2 833
6 TraesCS1B01G298000 chr6B 663786789 663787619 830 True 1397.000000 1397 96.999000 2719 3550 1 chr6B.!!$R1 831
7 TraesCS1B01G298000 chr6B 233031732 233033147 1415 True 288.000000 313 86.910000 7135 8251 2 chr6B.!!$R2 1116
8 TraesCS1B01G298000 chr5B 167286056 167286882 826 False 1393.000000 1393 96.992000 2720 3550 1 chr5B.!!$F1 830
9 TraesCS1B01G298000 chr5B 75323438 75324267 829 True 1367.000000 1367 96.296000 2715 3551 1 chr5B.!!$R1 836
10 TraesCS1B01G298000 chr5B 440546913 440547742 829 False 1365.000000 1365 96.283000 2719 3552 1 chr5B.!!$F2 833
11 TraesCS1B01G298000 chr2B 699713031 699713863 832 False 1386.000000 1386 96.655000 2720 3554 1 chr2B.!!$F1 834
12 TraesCS1B01G298000 chr2B 197590579 197591406 827 True 1376.000000 1376 96.631000 2720 3550 1 chr2B.!!$R1 830
13 TraesCS1B01G298000 chr7A 134549240 134550056 816 False 1059.000000 1059 89.881000 1264 2102 1 chr7A.!!$F1 838
14 TraesCS1B01G298000 chr3A 712620810 712621649 839 False 1022.000000 1022 88.515000 1242 2102 1 chr3A.!!$F2 860
15 TraesCS1B01G298000 chr6D 134287210 134288652 1442 True 528.500000 739 84.022500 7135 8251 2 chr6D.!!$R4 1116
16 TraesCS1B01G298000 chr6D 134692372 134693814 1442 True 521.500000 734 83.918000 7135 8251 2 chr6D.!!$R5 1116
17 TraesCS1B01G298000 chr6A 175651792 175653249 1457 True 497.500000 723 82.832000 7134 8248 2 chr6A.!!$R1 1114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.391130 TGTGGCAGTTATCAGCGTCC 60.391 55.000 0.00 0.00 0.00 4.79 F
295 311 0.678950 CCCAGAAACCGCACCAAATT 59.321 50.000 0.00 0.00 0.00 1.82 F
1926 1950 1.680249 GCTTGGATGGTTCAGAGGGTC 60.680 57.143 0.00 0.00 0.00 4.46 F
2504 2528 0.106015 GGGATGCCATACCTGCCTTT 60.106 55.000 0.00 0.00 0.00 3.11 F
2700 2745 0.110644 GCGCAGTTCTTTTGTCCGAG 60.111 55.000 0.30 0.00 0.00 4.63 F
4414 4696 0.040067 CACGACCTGCAAAAGAAGGC 60.040 55.000 0.00 0.00 37.03 4.35 F
4419 4701 1.183676 CCTGCAAAAGAAGGCCTGCT 61.184 55.000 7.75 7.75 35.78 4.24 F
5077 5359 1.342074 TCCTTGAGAGTGGACTGGTG 58.658 55.000 0.00 0.00 0.00 4.17 F
5203 5485 3.070878 AGTCATTTGCCCGGATTTGTTTT 59.929 39.130 0.73 0.00 0.00 2.43 F
6840 7124 0.097499 TCAGCTGCGAAAATGATGCG 59.903 50.000 9.47 0.00 0.00 4.73 F
7000 7284 0.183492 TTCCTTGTGAAGCTGGCACT 59.817 50.000 17.67 0.00 37.18 4.40 F
7001 7285 0.535780 TCCTTGTGAAGCTGGCACTG 60.536 55.000 17.67 11.66 37.18 3.66 F
7060 7344 1.348064 ATGGACTGTTTCCTCGACCA 58.652 50.000 0.00 0.00 46.10 4.02 F
7836 8277 1.282157 GGCTGGGTTGTCCTAGTTCAT 59.718 52.381 0.00 0.00 43.13 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 1923 0.527565 GAACCATCCAAGCACGCATT 59.472 50.000 0.00 0.00 0.00 3.56 R
2025 2049 5.968387 GTAACAATACCATCTTGTCCTCG 57.032 43.478 0.00 0.00 35.84 4.63 R
3006 3158 1.398832 CCGTTTTTCTTTCGTACCGCC 60.399 52.381 0.00 0.00 0.00 6.13 R
4414 4696 2.821969 ACTGTTATGCAAGGAAAGCAGG 59.178 45.455 0.00 0.00 46.36 4.85 R
4666 4948 1.615384 GGGCTGGACTTTGAGCAATCT 60.615 52.381 0.00 0.00 36.90 2.40 R
5717 6001 1.485124 ACCATGCATGACCTCTACGA 58.515 50.000 28.31 0.00 0.00 3.43 R
5977 6261 4.282703 GGTTACCAGAACAAGAGACAGGTA 59.717 45.833 0.00 0.00 0.00 3.08 R
6430 6714 2.031333 AGACACGAGGTGAAACGAGTAC 60.031 50.000 2.29 0.00 38.12 2.73 R
7162 7446 2.287308 TGCTTTGGAAAACGGAATGTCG 60.287 45.455 0.00 0.00 0.00 4.35 R
7802 8215 0.609151 CCAGCCATGGTGCAATTGAA 59.391 50.000 14.67 0.00 42.17 2.69 R
7805 8218 0.837260 AACCCAGCCATGGTGCAATT 60.837 50.000 14.67 0.08 46.10 2.32 R
7806 8219 1.229272 AACCCAGCCATGGTGCAAT 60.229 52.632 14.67 0.00 46.10 3.56 R
7991 8776 2.031683 GTGTCAGTGTAGCACAACAACC 59.968 50.000 8.38 0.00 35.34 3.77 R
9103 9966 0.250234 GGCAGCCAGTGTCAGTATCA 59.750 55.000 6.55 0.00 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.568000 GGTATGTGGGTGCATGTCA 57.432 52.632 0.00 0.00 0.00 3.58
19 20 2.057137 GGTATGTGGGTGCATGTCAT 57.943 50.000 0.00 0.00 0.00 3.06
20 21 3.207265 GGTATGTGGGTGCATGTCATA 57.793 47.619 0.00 0.00 0.00 2.15
21 22 3.754965 GGTATGTGGGTGCATGTCATAT 58.245 45.455 0.00 0.00 0.00 1.78
22 23 4.905429 GGTATGTGGGTGCATGTCATATA 58.095 43.478 0.00 0.00 0.00 0.86
23 24 5.500234 GGTATGTGGGTGCATGTCATATAT 58.500 41.667 0.00 0.00 0.00 0.86
24 25 5.355071 GGTATGTGGGTGCATGTCATATATG 59.645 44.000 6.36 6.36 0.00 1.78
31 32 3.460362 GCATGTCATATATGCCACACG 57.540 47.619 7.92 2.39 43.88 4.49
32 33 2.807967 GCATGTCATATATGCCACACGT 59.192 45.455 7.92 0.00 43.88 4.49
33 34 3.364267 GCATGTCATATATGCCACACGTG 60.364 47.826 15.48 15.48 43.88 4.49
34 35 3.535280 TGTCATATATGCCACACGTGT 57.465 42.857 17.22 17.22 0.00 4.49
35 36 3.194062 TGTCATATATGCCACACGTGTG 58.806 45.455 36.13 36.13 45.23 3.82
45 46 1.507562 CACACGTGTGGCAGTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
46 47 1.460743 CACACGTGTGGCAGTTATCAG 59.539 52.381 35.65 10.09 42.10 2.90
47 48 0.443869 CACGTGTGGCAGTTATCAGC 59.556 55.000 7.58 0.00 0.00 4.26
48 49 1.014044 ACGTGTGGCAGTTATCAGCG 61.014 55.000 0.00 0.00 0.00 5.18
49 50 1.014044 CGTGTGGCAGTTATCAGCGT 61.014 55.000 0.00 0.00 0.00 5.07
50 51 0.721718 GTGTGGCAGTTATCAGCGTC 59.278 55.000 0.00 0.00 0.00 5.19
51 52 0.391130 TGTGGCAGTTATCAGCGTCC 60.391 55.000 0.00 0.00 0.00 4.79
167 178 3.683937 CCAAACCGCAAGCCCAGG 61.684 66.667 0.00 0.00 0.00 4.45
295 311 0.678950 CCCAGAAACCGCACCAAATT 59.321 50.000 0.00 0.00 0.00 1.82
1203 1222 2.590007 GAAGCCGATGCCGATGCT 60.590 61.111 0.00 0.00 38.69 3.79
1440 1460 1.720301 CTACTTCCCCGTCGAGTCG 59.280 63.158 6.09 6.09 0.00 4.18
1837 1861 6.593382 ACATTGACTTCTTCTCTGCAAGTATC 59.407 38.462 0.00 0.00 30.32 2.24
1847 1871 4.402793 TCTCTGCAAGTATCCAGGTTAGAC 59.597 45.833 0.00 0.00 33.76 2.59
1854 1878 2.409948 ATCCAGGTTAGACTTGCAGC 57.590 50.000 0.00 0.00 0.00 5.25
1859 1883 3.366679 CCAGGTTAGACTTGCAGCAATTG 60.367 47.826 8.67 0.00 0.00 2.32
1890 1914 3.944015 GGTGCTGAGAATCTACTGCATTT 59.056 43.478 13.66 0.00 41.34 2.32
1899 1923 7.553760 TGAGAATCTACTGCATTTGCTAATTGA 59.446 33.333 3.94 0.00 37.83 2.57
1926 1950 1.680249 GCTTGGATGGTTCAGAGGGTC 60.680 57.143 0.00 0.00 0.00 4.46
2025 2049 3.190874 GCTGTGTAATCTACTGCAGTCC 58.809 50.000 25.56 6.15 41.06 3.85
2102 2126 4.210120 GCATGTACATAGTGCTCTGCTAAC 59.790 45.833 8.32 0.00 36.02 2.34
2317 2341 3.555168 CCCTTGACCTTCTATGCGTATCC 60.555 52.174 0.00 0.00 0.00 2.59
2324 2348 5.326069 ACCTTCTATGCGTATCCTGAGTAT 58.674 41.667 0.00 0.00 0.00 2.12
2504 2528 0.106015 GGGATGCCATACCTGCCTTT 60.106 55.000 0.00 0.00 0.00 3.11
2700 2745 0.110644 GCGCAGTTCTTTTGTCCGAG 60.111 55.000 0.30 0.00 0.00 4.63
2732 2883 7.883311 ACCATTATTGTGTACTAGCAAAAGAGT 59.117 33.333 0.00 0.00 0.00 3.24
2948 3100 2.305635 AGGTGCTCATGTGTGGTTATCA 59.694 45.455 0.00 0.00 0.00 2.15
2961 3113 8.006298 TGTGTGGTTATCAATGTTTTCTTTCT 57.994 30.769 0.00 0.00 0.00 2.52
3006 3158 5.639757 TGTTTATTTGCAATCCAGATCGTG 58.360 37.500 0.00 0.00 0.00 4.35
3605 3761 2.305052 CTCCCTCCGGTCCTTTTTACTT 59.695 50.000 0.00 0.00 0.00 2.24
3606 3762 2.303890 TCCCTCCGGTCCTTTTTACTTC 59.696 50.000 0.00 0.00 0.00 3.01
3803 4085 7.121463 ACGTAGAGATACTTTGACTTCAGACAT 59.879 37.037 0.00 0.00 0.00 3.06
3804 4086 7.971168 CGTAGAGATACTTTGACTTCAGACATT 59.029 37.037 0.00 0.00 0.00 2.71
3994 4276 2.038952 TGAAGTTCACACTAGCTGCCAT 59.961 45.455 0.08 0.00 30.68 4.40
4012 4294 4.883585 TGCCATCCAGTGATTTGATAGTTC 59.116 41.667 0.00 0.00 0.00 3.01
4045 4327 5.525484 TCCTACCAGGTTAATGAAGCTCTA 58.475 41.667 0.00 0.00 41.49 2.43
4102 4384 7.042187 GCAAGAGATGTTGAAGACACCTATATG 60.042 40.741 0.00 0.00 42.04 1.78
4190 4472 4.656112 TCCTTCCTATCTTGATCAAGGTCC 59.344 45.833 30.33 0.00 38.88 4.46
4414 4696 0.040067 CACGACCTGCAAAAGAAGGC 60.040 55.000 0.00 0.00 37.03 4.35
4419 4701 1.183676 CCTGCAAAAGAAGGCCTGCT 61.184 55.000 7.75 7.75 35.78 4.24
4436 4718 3.119708 CCTGCTTTCCTTGCATAACAGTC 60.120 47.826 0.00 0.00 39.86 3.51
4438 4720 2.159517 GCTTTCCTTGCATAACAGTCGG 60.160 50.000 0.00 0.00 0.00 4.79
4472 4754 6.277605 TCACTGAACTCGTTAATTGTCTGAA 58.722 36.000 0.00 0.00 0.00 3.02
4532 4814 3.806949 TCTTGGCTGGTTTATTGTCCT 57.193 42.857 0.00 0.00 0.00 3.85
4573 4855 9.270640 GTGCTAATCTCATCACTGAAGATTATT 57.729 33.333 11.27 5.83 34.58 1.40
4666 4948 4.833478 AGAGGCTCTTCTTATGCAAGAA 57.167 40.909 12.24 0.00 46.24 2.52
4783 5065 2.042686 TTGATTCCCGCCAATCTGAG 57.957 50.000 6.23 0.00 34.35 3.35
4897 5179 4.332819 GTGAATTCAGAGATGGGGTTAACG 59.667 45.833 8.80 0.00 0.00 3.18
5008 5290 6.357367 AGAACACTTGTCTACCATTTTGAGT 58.643 36.000 0.00 0.00 0.00 3.41
5077 5359 1.342074 TCCTTGAGAGTGGACTGGTG 58.658 55.000 0.00 0.00 0.00 4.17
5143 5425 9.347240 CAGGTGGATGACAATCTTAAAGATTAT 57.653 33.333 0.00 0.00 42.67 1.28
5203 5485 3.070878 AGTCATTTGCCCGGATTTGTTTT 59.929 39.130 0.73 0.00 0.00 2.43
5318 5600 6.435277 AGTGATAATGAGCCACAATTTCAAGT 59.565 34.615 0.00 0.00 33.53 3.16
5325 5607 3.571401 AGCCACAATTTCAAGTCAAGGAG 59.429 43.478 0.00 0.00 0.00 3.69
5628 5910 9.434275 TCCTTCATCAGAGGTATTATTCTGTTA 57.566 33.333 1.90 0.00 41.21 2.41
5727 6011 6.445475 ACTTTCTTTTAGTGTCGTAGAGGTC 58.555 40.000 0.00 0.00 36.95 3.85
5803 6087 9.645128 ATCATCCAATAAATCCACAGTTTATCA 57.355 29.630 0.00 0.00 32.21 2.15
5879 6163 6.040166 CAGGGTATCATCAGGGAAAATCAAAG 59.960 42.308 0.00 0.00 0.00 2.77
5977 6261 6.648192 ACTAGCTGTTATTCTCTGATTTGCT 58.352 36.000 0.00 0.00 0.00 3.91
6002 6286 4.310769 CTGTCTCTTGTTCTGGTAACCTG 58.689 47.826 0.00 0.00 0.00 4.00
6287 6571 4.746611 TGTCTAATGCAGCGATATCAACAG 59.253 41.667 3.12 0.00 0.00 3.16
6430 6714 7.878036 TGAAAGTTTTAGAAGGATTAAACCGG 58.122 34.615 0.00 0.00 32.35 5.28
6840 7124 0.097499 TCAGCTGCGAAAATGATGCG 59.903 50.000 9.47 0.00 0.00 4.73
6858 7142 4.994907 TGCGTTCCTATGCTAAGAGTAA 57.005 40.909 0.00 0.00 37.19 2.24
6859 7143 4.679662 TGCGTTCCTATGCTAAGAGTAAC 58.320 43.478 0.00 0.00 37.19 2.50
6913 7197 1.405121 GGCACAGGTTTAGGTCCTACG 60.405 57.143 0.00 0.00 33.54 3.51
7000 7284 0.183492 TTCCTTGTGAAGCTGGCACT 59.817 50.000 17.67 0.00 37.18 4.40
7001 7285 0.535780 TCCTTGTGAAGCTGGCACTG 60.536 55.000 17.67 11.66 37.18 3.66
7007 7291 2.224499 TGTGAAGCTGGCACTGACAATA 60.224 45.455 17.67 0.00 37.18 1.90
7019 7303 4.142816 GCACTGACAATACTCACATTGGTC 60.143 45.833 1.36 0.00 39.71 4.02
7060 7344 1.348064 ATGGACTGTTTCCTCGACCA 58.652 50.000 0.00 0.00 46.10 4.02
7092 7376 5.489792 TCTGTAGATTGTGCTTCCTTCTT 57.510 39.130 0.00 0.00 0.00 2.52
7162 7446 5.508657 GGCAATTAAGGATGGCAGAATTCTC 60.509 44.000 4.57 0.75 41.38 2.87
7171 7455 1.594862 GGCAGAATTCTCGACATTCCG 59.405 52.381 4.57 0.00 31.86 4.30
7221 7505 3.953542 AGGACAGGTATTTTGGATCCC 57.046 47.619 9.90 0.00 0.00 3.85
7506 7834 6.547510 GGGTATCCAGAATATGTGCTTTCTTT 59.452 38.462 0.00 0.00 29.85 2.52
7511 7839 6.540189 TCCAGAATATGTGCTTTCTTTAGAGC 59.460 38.462 0.00 0.00 39.33 4.09
7550 7881 4.465632 AGTGATATGACCGTGCACTTTA 57.534 40.909 16.19 0.00 36.49 1.85
7588 7921 8.424918 TCTCAGCAGATTAAAGTATTCCCTAAG 58.575 37.037 0.00 0.00 0.00 2.18
7640 7973 7.976175 GGTGAGAATTTGGAAGAATATGTTTCC 59.024 37.037 10.25 10.25 42.56 3.13
7724 8057 7.040494 CAGGATTCAGTCAGGTATGCTATATG 58.960 42.308 0.00 0.00 0.00 1.78
7743 8076 6.803366 ATATGATGGTGCTGCTCTCATATA 57.197 37.500 17.58 10.99 37.62 0.86
7745 8078 4.828829 TGATGGTGCTGCTCTCATATATG 58.171 43.478 6.36 6.36 0.00 1.78
7748 8161 5.039920 TGGTGCTGCTCTCATATATGTTT 57.960 39.130 12.42 0.00 0.00 2.83
7749 8162 6.173427 TGGTGCTGCTCTCATATATGTTTA 57.827 37.500 12.42 0.00 0.00 2.01
7756 8169 9.645059 GCTGCTCTCATATATGTTTATACTTGA 57.355 33.333 12.42 0.00 0.00 3.02
7776 8189 8.409358 ACTTGAGTAATTAATGACAGCCTTTT 57.591 30.769 5.72 0.00 0.00 2.27
7781 8194 9.989869 GAGTAATTAATGACAGCCTTTTAGTTC 57.010 33.333 5.72 0.00 0.00 3.01
7782 8195 8.957466 AGTAATTAATGACAGCCTTTTAGTTCC 58.043 33.333 5.72 0.00 0.00 3.62
7783 8196 7.775053 AATTAATGACAGCCTTTTAGTTCCA 57.225 32.000 0.00 0.00 0.00 3.53
7784 8197 6.569179 TTAATGACAGCCTTTTAGTTCCAC 57.431 37.500 0.00 0.00 0.00 4.02
7785 8198 2.858745 TGACAGCCTTTTAGTTCCACC 58.141 47.619 0.00 0.00 0.00 4.61
7786 8199 2.173782 TGACAGCCTTTTAGTTCCACCA 59.826 45.455 0.00 0.00 0.00 4.17
7787 8200 3.181434 TGACAGCCTTTTAGTTCCACCAT 60.181 43.478 0.00 0.00 0.00 3.55
7788 8201 3.421844 ACAGCCTTTTAGTTCCACCATC 58.578 45.455 0.00 0.00 0.00 3.51
7789 8202 3.074538 ACAGCCTTTTAGTTCCACCATCT 59.925 43.478 0.00 0.00 0.00 2.90
7790 8203 4.288626 ACAGCCTTTTAGTTCCACCATCTA 59.711 41.667 0.00 0.00 0.00 1.98
7791 8204 5.222048 ACAGCCTTTTAGTTCCACCATCTAA 60.222 40.000 0.00 0.00 0.00 2.10
7792 8205 5.710099 CAGCCTTTTAGTTCCACCATCTAAA 59.290 40.000 0.00 0.00 33.64 1.85
7793 8206 6.208599 CAGCCTTTTAGTTCCACCATCTAAAA 59.791 38.462 0.00 0.00 39.61 1.52
7794 8207 6.780522 AGCCTTTTAGTTCCACCATCTAAAAA 59.219 34.615 0.00 0.00 40.58 1.94
7795 8208 7.454694 AGCCTTTTAGTTCCACCATCTAAAAAT 59.545 33.333 0.00 0.00 40.58 1.82
7796 8209 8.745590 GCCTTTTAGTTCCACCATCTAAAAATA 58.254 33.333 0.00 0.00 40.58 1.40
7799 8212 7.875327 TTAGTTCCACCATCTAAAAATAGGC 57.125 36.000 0.00 0.00 0.00 3.93
7800 8213 6.079712 AGTTCCACCATCTAAAAATAGGCT 57.920 37.500 0.00 0.00 0.00 4.58
7801 8214 6.494059 AGTTCCACCATCTAAAAATAGGCTT 58.506 36.000 0.00 0.00 0.00 4.35
7802 8215 6.954102 AGTTCCACCATCTAAAAATAGGCTTT 59.046 34.615 0.00 0.00 0.00 3.51
7803 8216 7.454694 AGTTCCACCATCTAAAAATAGGCTTTT 59.545 33.333 0.00 0.00 33.22 2.27
7804 8217 7.404671 TCCACCATCTAAAAATAGGCTTTTC 57.595 36.000 0.00 0.00 31.15 2.29
7805 8218 6.951198 TCCACCATCTAAAAATAGGCTTTTCA 59.049 34.615 0.00 0.00 31.15 2.69
7806 8219 7.453126 TCCACCATCTAAAAATAGGCTTTTCAA 59.547 33.333 0.00 0.00 31.15 2.69
7807 8220 8.260114 CCACCATCTAAAAATAGGCTTTTCAAT 58.740 33.333 0.00 0.00 31.15 2.57
7808 8221 9.657419 CACCATCTAAAAATAGGCTTTTCAATT 57.343 29.630 0.00 0.00 31.15 2.32
7809 8222 9.657419 ACCATCTAAAAATAGGCTTTTCAATTG 57.343 29.630 0.00 0.00 31.15 2.32
7818 8231 1.465777 GCTTTTCAATTGCACCATGGC 59.534 47.619 13.04 0.00 0.00 4.40
7829 8270 2.765969 CCATGGCTGGGTTGTCCT 59.234 61.111 0.00 0.00 39.04 3.85
7836 8277 1.282157 GGCTGGGTTGTCCTAGTTCAT 59.718 52.381 0.00 0.00 43.13 2.57
7846 8287 6.127730 GGTTGTCCTAGTTCATAAAATGTGGG 60.128 42.308 0.00 0.00 0.00 4.61
7847 8288 6.134535 TGTCCTAGTTCATAAAATGTGGGT 57.865 37.500 0.00 0.00 0.00 4.51
7848 8289 5.943416 TGTCCTAGTTCATAAAATGTGGGTG 59.057 40.000 0.00 0.00 0.00 4.61
7849 8290 5.944007 GTCCTAGTTCATAAAATGTGGGTGT 59.056 40.000 0.00 0.00 0.00 4.16
7850 8291 5.943416 TCCTAGTTCATAAAATGTGGGTGTG 59.057 40.000 0.00 0.00 0.00 3.82
7851 8292 5.710099 CCTAGTTCATAAAATGTGGGTGTGT 59.290 40.000 0.00 0.00 0.00 3.72
7852 8293 5.452078 AGTTCATAAAATGTGGGTGTGTG 57.548 39.130 0.00 0.00 0.00 3.82
7853 8294 4.892934 AGTTCATAAAATGTGGGTGTGTGT 59.107 37.500 0.00 0.00 0.00 3.72
7854 8295 6.065374 AGTTCATAAAATGTGGGTGTGTGTA 58.935 36.000 0.00 0.00 0.00 2.90
7874 8325 8.180920 GTGTGTAGTTACTTACCTAGAAGCTAC 58.819 40.741 0.00 0.00 0.00 3.58
7890 8341 3.643237 AGCTACCATGGCTCTACAGTTA 58.357 45.455 13.04 0.00 34.70 2.24
7893 8344 4.141914 GCTACCATGGCTCTACAGTTAGTT 60.142 45.833 13.04 0.00 0.00 2.24
7910 8362 8.876790 ACAGTTAGTTTTTATATGCGTTCTACC 58.123 33.333 0.00 0.00 0.00 3.18
7911 8363 8.875803 CAGTTAGTTTTTATATGCGTTCTACCA 58.124 33.333 0.00 0.00 0.00 3.25
7913 8365 9.646336 GTTAGTTTTTATATGCGTTCTACCATG 57.354 33.333 0.00 0.00 0.00 3.66
7914 8366 7.259290 AGTTTTTATATGCGTTCTACCATGG 57.741 36.000 11.19 11.19 0.00 3.66
7921 8702 2.169561 TGCGTTCTACCATGGCTCAATA 59.830 45.455 13.04 0.00 0.00 1.90
7933 8714 5.277683 CCATGGCTCAATATTTCACTTCTCG 60.278 44.000 0.00 0.00 0.00 4.04
7981 8766 5.044428 TGTCTCTTACTGCTCGTAGTTTC 57.956 43.478 0.00 0.00 32.19 2.78
7991 8776 5.049405 ACTGCTCGTAGTTTCAAAAATCCAG 60.049 40.000 0.00 0.00 0.00 3.86
7992 8777 4.215399 TGCTCGTAGTTTCAAAAATCCAGG 59.785 41.667 0.00 0.00 0.00 4.45
8015 8801 2.093711 TGTTGTGCTACACTGACACTGT 60.094 45.455 0.00 0.00 35.11 3.55
8048 8834 3.462483 TTTCCACTAAGCACACTTCGA 57.538 42.857 0.00 0.00 37.33 3.71
8117 8903 7.516198 AGATAATTGGGATGTATGTGCTTTC 57.484 36.000 0.00 0.00 0.00 2.62
8121 8955 3.620488 TGGGATGTATGTGCTTTCCTTC 58.380 45.455 0.00 0.00 0.00 3.46
8127 8961 4.713553 TGTATGTGCTTTCCTTCTGTTGA 58.286 39.130 0.00 0.00 0.00 3.18
8132 8966 4.142403 TGTGCTTTCCTTCTGTTGAAAGTG 60.142 41.667 12.10 0.00 45.83 3.16
8144 8984 6.563422 TCTGTTGAAAGTGGATTTTCTTGTG 58.437 36.000 0.90 0.00 37.81 3.33
8181 9038 4.143030 CGTTATTGACACCTTGCTTCTGAG 60.143 45.833 0.00 0.00 0.00 3.35
8439 9299 2.666098 GCTCCCTCCAGGCGGTTTA 61.666 63.158 0.00 0.00 34.51 2.01
8508 9368 8.773404 TTCACAATTTAAAGCTACCTCTCTAC 57.227 34.615 0.00 0.00 0.00 2.59
8521 9381 5.987019 ACCTCTCTACCTCTCTATCAGTT 57.013 43.478 0.00 0.00 0.00 3.16
8522 9382 7.256404 GCTACCTCTCTACCTCTCTATCAGTTA 60.256 44.444 0.00 0.00 0.00 2.24
8523 9383 6.834107 ACCTCTCTACCTCTCTATCAGTTAC 58.166 44.000 0.00 0.00 0.00 2.50
8524 9384 6.618196 ACCTCTCTACCTCTCTATCAGTTACT 59.382 42.308 0.00 0.00 0.00 2.24
8525 9385 7.159372 CCTCTCTACCTCTCTATCAGTTACTC 58.841 46.154 0.00 0.00 0.00 2.59
8526 9386 7.069877 TCTCTACCTCTCTATCAGTTACTCC 57.930 44.000 0.00 0.00 0.00 3.85
8527 9387 6.043474 TCTCTACCTCTCTATCAGTTACTCCC 59.957 46.154 0.00 0.00 0.00 4.30
8528 9388 5.912354 TCTACCTCTCTATCAGTTACTCCCT 59.088 44.000 0.00 0.00 0.00 4.20
8529 9389 5.056553 ACCTCTCTATCAGTTACTCCCTC 57.943 47.826 0.00 0.00 0.00 4.30
8530 9390 4.141111 ACCTCTCTATCAGTTACTCCCTCC 60.141 50.000 0.00 0.00 0.00 4.30
8531 9391 4.069304 CTCTCTATCAGTTACTCCCTCCG 58.931 52.174 0.00 0.00 0.00 4.63
8532 9392 3.458857 TCTCTATCAGTTACTCCCTCCGT 59.541 47.826 0.00 0.00 0.00 4.69
8533 9393 4.079901 TCTCTATCAGTTACTCCCTCCGTT 60.080 45.833 0.00 0.00 0.00 4.44
8534 9394 4.205587 TCTATCAGTTACTCCCTCCGTTC 58.794 47.826 0.00 0.00 0.00 3.95
8535 9395 1.553706 TCAGTTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
8536 9396 1.076677 TCAGTTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
8537 9397 2.309755 TCAGTTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
8538 9398 3.094572 CAGTTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
8539 9399 3.705072 CAGTTACTCCCTCCGTTCCTAAT 59.295 47.826 0.00 0.00 0.00 1.73
8540 9400 4.891756 CAGTTACTCCCTCCGTTCCTAATA 59.108 45.833 0.00 0.00 0.00 0.98
8541 9401 5.539193 CAGTTACTCCCTCCGTTCCTAATAT 59.461 44.000 0.00 0.00 0.00 1.28
8542 9402 6.718454 CAGTTACTCCCTCCGTTCCTAATATA 59.282 42.308 0.00 0.00 0.00 0.86
8543 9403 7.232127 CAGTTACTCCCTCCGTTCCTAATATAA 59.768 40.741 0.00 0.00 0.00 0.98
8544 9404 7.450944 AGTTACTCCCTCCGTTCCTAATATAAG 59.549 40.741 0.00 0.00 0.00 1.73
8545 9405 5.961897 ACTCCCTCCGTTCCTAATATAAGA 58.038 41.667 0.00 0.00 0.00 2.10
8546 9406 6.379579 ACTCCCTCCGTTCCTAATATAAGAA 58.620 40.000 0.00 0.00 0.00 2.52
8547 9407 6.267242 ACTCCCTCCGTTCCTAATATAAGAAC 59.733 42.308 0.00 0.00 37.20 3.01
8559 9419 9.715121 TCCTAATATAAGAACGTTTTTGACACT 57.285 29.630 13.87 0.00 0.00 3.55
8564 9424 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
8565 9425 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
8566 9426 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
8567 9427 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
8580 9440 6.787085 ACTACACTAGTGTCAAAAATGCTC 57.213 37.500 31.11 0.00 43.74 4.26
8581 9441 6.525629 ACTACACTAGTGTCAAAAATGCTCT 58.474 36.000 31.11 5.44 43.74 4.09
8582 9442 6.992715 ACTACACTAGTGTCAAAAATGCTCTT 59.007 34.615 31.11 4.99 43.74 2.85
8583 9443 8.148351 ACTACACTAGTGTCAAAAATGCTCTTA 58.852 33.333 31.11 8.36 43.74 2.10
8584 9444 7.986085 ACACTAGTGTCAAAAATGCTCTTAT 57.014 32.000 22.95 0.00 40.24 1.73
8586 9446 9.672673 ACACTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 22.95 0.00 40.24 0.86
8592 9452 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
8593 9453 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
8596 9456 9.865321 CAAAAATGCTCTTATATTATGGGATGG 57.135 33.333 0.00 0.00 0.00 3.51
8597 9457 9.827198 AAAAATGCTCTTATATTATGGGATGGA 57.173 29.630 0.00 0.00 0.00 3.41
8598 9458 9.471702 AAAATGCTCTTATATTATGGGATGGAG 57.528 33.333 0.00 0.00 0.00 3.86
8599 9459 6.566079 TGCTCTTATATTATGGGATGGAGG 57.434 41.667 0.00 0.00 0.00 4.30
8600 9460 5.429762 TGCTCTTATATTATGGGATGGAGGG 59.570 44.000 0.00 0.00 0.00 4.30
8601 9461 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
8602 9462 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
8637 9497 8.041323 ACTAGTTTGCTAACTTGTGCTATACAT 58.959 33.333 22.21 0.48 44.76 2.29
8752 9612 3.511934 TCTGAACTCTCTACCTTTCTGCC 59.488 47.826 0.00 0.00 0.00 4.85
8753 9613 3.511477 TGAACTCTCTACCTTTCTGCCT 58.489 45.455 0.00 0.00 0.00 4.75
8754 9614 4.673968 TGAACTCTCTACCTTTCTGCCTA 58.326 43.478 0.00 0.00 0.00 3.93
8757 9617 4.020543 ACTCTCTACCTTTCTGCCTACTG 58.979 47.826 0.00 0.00 0.00 2.74
8758 9618 2.761208 TCTCTACCTTTCTGCCTACTGC 59.239 50.000 0.00 0.00 41.77 4.40
8759 9619 2.763448 CTCTACCTTTCTGCCTACTGCT 59.237 50.000 0.00 0.00 42.00 4.24
8762 9622 2.821437 ACCTTTCTGCCTACTGCTCTA 58.179 47.619 0.00 0.00 42.00 2.43
8766 9626 4.100808 CCTTTCTGCCTACTGCTCTAAGAT 59.899 45.833 0.00 0.00 42.00 2.40
8767 9627 4.662468 TTCTGCCTACTGCTCTAAGATG 57.338 45.455 0.00 0.00 42.00 2.90
8846 9706 8.338259 ACAAGCGCTTTAATATCTTGATGTAAG 58.662 33.333 22.51 4.86 37.96 2.34
8947 9809 5.887598 TCTGGCATGAATATTTGCAGTAGTT 59.112 36.000 12.87 0.00 40.66 2.24
8948 9810 6.377996 TCTGGCATGAATATTTGCAGTAGTTT 59.622 34.615 12.87 0.00 40.66 2.66
8967 9829 9.305555 AGTAGTTTCAGTTCCAGTTACTATACA 57.694 33.333 0.00 0.00 0.00 2.29
9001 9863 6.046593 CCTGAAAGTTACTGTATATTGGCGA 58.953 40.000 0.00 0.00 0.00 5.54
9012 9874 4.871557 TGTATATTGGCGAACTAACACCAC 59.128 41.667 0.00 0.00 0.00 4.16
9021 9884 3.623960 CGAACTAACACCACACCTTTTGA 59.376 43.478 0.00 0.00 0.00 2.69
9022 9885 4.274950 CGAACTAACACCACACCTTTTGAT 59.725 41.667 0.00 0.00 0.00 2.57
9064 9927 2.945798 AGCTACTCTACGCGATTACG 57.054 50.000 15.93 0.00 42.93 3.18
9192 10055 7.356089 TCATGTAGGGAAACAAGATACGTAT 57.644 36.000 8.05 8.05 32.02 3.06
9218 10081 3.317608 CGGCTCGCTAAACTTACGA 57.682 52.632 0.00 0.00 0.00 3.43
9219 10082 0.912528 CGGCTCGCTAAACTTACGAC 59.087 55.000 0.00 0.00 0.00 4.34
9220 10083 1.730121 CGGCTCGCTAAACTTACGACA 60.730 52.381 0.00 0.00 0.00 4.35
9221 10084 2.537401 GGCTCGCTAAACTTACGACAT 58.463 47.619 0.00 0.00 0.00 3.06
9222 10085 2.281762 GGCTCGCTAAACTTACGACATG 59.718 50.000 0.00 0.00 0.00 3.21
9223 10086 3.176708 GCTCGCTAAACTTACGACATGA 58.823 45.455 0.00 0.00 0.00 3.07
9224 10087 3.797256 GCTCGCTAAACTTACGACATGAT 59.203 43.478 0.00 0.00 0.00 2.45
9225 10088 4.267928 GCTCGCTAAACTTACGACATGATT 59.732 41.667 0.00 0.00 0.00 2.57
9226 10089 5.696260 TCGCTAAACTTACGACATGATTG 57.304 39.130 0.00 0.00 0.00 2.67
9227 10090 4.565166 TCGCTAAACTTACGACATGATTGG 59.435 41.667 0.00 0.00 0.00 3.16
9228 10091 4.260212 CGCTAAACTTACGACATGATTGGG 60.260 45.833 0.00 0.00 0.00 4.12
9229 10092 4.634443 GCTAAACTTACGACATGATTGGGT 59.366 41.667 0.00 0.00 0.00 4.51
9230 10093 5.447279 GCTAAACTTACGACATGATTGGGTG 60.447 44.000 0.00 0.00 0.00 4.61
9231 10094 3.695830 ACTTACGACATGATTGGGTGT 57.304 42.857 0.00 0.00 0.00 4.16
9232 10095 3.334691 ACTTACGACATGATTGGGTGTG 58.665 45.455 0.00 0.00 0.00 3.82
9233 10096 2.394930 TACGACATGATTGGGTGTGG 57.605 50.000 0.00 0.00 0.00 4.17
9234 10097 0.690192 ACGACATGATTGGGTGTGGA 59.310 50.000 0.00 0.00 0.00 4.02
9235 10098 1.339055 ACGACATGATTGGGTGTGGAG 60.339 52.381 0.00 0.00 0.00 3.86
9236 10099 1.098050 GACATGATTGGGTGTGGAGC 58.902 55.000 0.00 0.00 0.00 4.70
9237 10100 0.700564 ACATGATTGGGTGTGGAGCT 59.299 50.000 0.00 0.00 0.00 4.09
9238 10101 1.076024 ACATGATTGGGTGTGGAGCTT 59.924 47.619 0.00 0.00 0.00 3.74
9537 10401 1.204113 AGGGGAAGAAGCAGAGGGTG 61.204 60.000 0.00 0.00 0.00 4.61
9848 10727 2.113139 CCACGTTGGCTCCCTTGT 59.887 61.111 0.00 0.00 0.00 3.16
9892 10771 3.743396 TGGGTTTTGTTGATTTATTGCGC 59.257 39.130 0.00 0.00 0.00 6.09
9924 10803 3.473923 TGATAAGGATCATGCTTGCGA 57.526 42.857 0.78 0.00 37.15 5.10
9929 10808 1.134310 AGGATCATGCTTGCGATGTCA 60.134 47.619 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.057137 ATGACATGCACCCACATACC 57.943 50.000 0.00 0.00 0.00 2.73
1 2 5.163723 GCATATATGACATGCACCCACATAC 60.164 44.000 17.10 0.00 46.47 2.39
2 3 4.943093 GCATATATGACATGCACCCACATA 59.057 41.667 17.10 0.00 46.47 2.29
3 4 3.760151 GCATATATGACATGCACCCACAT 59.240 43.478 17.10 0.00 46.47 3.21
5 6 3.837213 GCATATATGACATGCACCCAC 57.163 47.619 17.10 0.00 46.47 4.61
14 15 3.194062 CACACGTGTGGCATATATGACA 58.806 45.455 35.65 17.65 45.19 3.58
15 16 3.859745 CACACGTGTGGCATATATGAC 57.140 47.619 35.65 14.60 42.10 3.06
26 27 1.460743 CTGATAACTGCCACACGTGTG 59.539 52.381 36.13 36.13 45.23 3.82
27 28 1.795768 CTGATAACTGCCACACGTGT 58.204 50.000 17.22 17.22 0.00 4.49
28 29 0.443869 GCTGATAACTGCCACACGTG 59.556 55.000 15.48 15.48 35.44 4.49
29 30 1.014044 CGCTGATAACTGCCACACGT 61.014 55.000 0.00 0.00 37.62 4.49
30 31 1.014044 ACGCTGATAACTGCCACACG 61.014 55.000 0.00 0.00 37.62 4.49
31 32 0.721718 GACGCTGATAACTGCCACAC 59.278 55.000 0.00 0.00 37.62 3.82
32 33 0.391130 GGACGCTGATAACTGCCACA 60.391 55.000 0.00 0.00 37.62 4.17
33 34 0.391130 TGGACGCTGATAACTGCCAC 60.391 55.000 0.00 0.00 37.62 5.01
34 35 0.541392 ATGGACGCTGATAACTGCCA 59.459 50.000 0.00 0.00 37.62 4.92
35 36 1.668419 AATGGACGCTGATAACTGCC 58.332 50.000 0.00 0.00 37.62 4.85
36 37 3.621268 TGTTAATGGACGCTGATAACTGC 59.379 43.478 0.00 0.00 37.56 4.40
37 38 5.794687 TTGTTAATGGACGCTGATAACTG 57.205 39.130 0.00 0.00 0.00 3.16
38 39 5.163754 GCTTTGTTAATGGACGCTGATAACT 60.164 40.000 0.00 0.00 0.00 2.24
39 40 5.028375 GCTTTGTTAATGGACGCTGATAAC 58.972 41.667 0.00 0.00 0.00 1.89
40 41 4.697828 TGCTTTGTTAATGGACGCTGATAA 59.302 37.500 0.00 0.00 0.00 1.75
41 42 4.094294 GTGCTTTGTTAATGGACGCTGATA 59.906 41.667 0.00 0.00 0.00 2.15
42 43 3.081061 TGCTTTGTTAATGGACGCTGAT 58.919 40.909 0.00 0.00 0.00 2.90
43 44 2.225491 GTGCTTTGTTAATGGACGCTGA 59.775 45.455 0.00 0.00 0.00 4.26
44 45 2.584791 GTGCTTTGTTAATGGACGCTG 58.415 47.619 0.00 0.00 0.00 5.18
45 46 1.196808 CGTGCTTTGTTAATGGACGCT 59.803 47.619 8.11 0.00 41.67 5.07
46 47 1.602191 CGTGCTTTGTTAATGGACGC 58.398 50.000 8.11 0.00 41.67 5.19
48 49 2.315901 GTGCGTGCTTTGTTAATGGAC 58.684 47.619 0.00 0.00 0.00 4.02
49 50 1.069568 CGTGCGTGCTTTGTTAATGGA 60.070 47.619 0.00 0.00 0.00 3.41
50 51 1.326576 CGTGCGTGCTTTGTTAATGG 58.673 50.000 0.00 0.00 0.00 3.16
51 52 1.326576 CCGTGCGTGCTTTGTTAATG 58.673 50.000 0.00 0.00 0.00 1.90
175 191 4.626081 AACTGAACTGCGCGGCCT 62.626 61.111 18.15 3.02 0.00 5.19
176 192 4.090057 GAACTGAACTGCGCGGCC 62.090 66.667 18.15 9.34 0.00 6.13
178 194 1.577328 AATGGAACTGAACTGCGCGG 61.577 55.000 16.39 16.39 0.00 6.46
183 199 2.749621 GGGCAGTAATGGAACTGAACTG 59.250 50.000 8.13 0.00 40.38 3.16
184 200 2.644798 AGGGCAGTAATGGAACTGAACT 59.355 45.455 8.13 2.34 34.56 3.01
185 201 3.010420 GAGGGCAGTAATGGAACTGAAC 58.990 50.000 8.13 0.32 34.56 3.18
186 202 2.026262 GGAGGGCAGTAATGGAACTGAA 60.026 50.000 8.13 0.00 34.56 3.02
187 203 1.559682 GGAGGGCAGTAATGGAACTGA 59.440 52.381 8.13 0.00 34.56 3.41
1188 1207 3.174507 ATCAGCATCGGCATCGGCT 62.175 57.895 0.00 0.00 44.61 5.52
1194 1213 3.465258 ATCGGCATCAGCATCGGCA 62.465 57.895 0.00 0.00 44.61 5.69
1203 1222 2.186644 CCGTCCACATCGGCATCA 59.813 61.111 0.00 0.00 41.48 3.07
1272 1291 3.900892 CCGTCCCCATCCGACTCG 61.901 72.222 0.00 0.00 0.00 4.18
1837 1861 1.896220 TTGCTGCAAGTCTAACCTGG 58.104 50.000 11.69 0.00 35.30 4.45
1854 1878 3.655486 TCAGCACCAAAAGATGCAATTG 58.345 40.909 0.00 0.00 44.59 2.32
1859 1883 3.442977 AGATTCTCAGCACCAAAAGATGC 59.557 43.478 0.00 0.00 42.39 3.91
1890 1914 2.415759 CCAAGCACGCATTCAATTAGCA 60.416 45.455 0.00 0.00 0.00 3.49
1899 1923 0.527565 GAACCATCCAAGCACGCATT 59.472 50.000 0.00 0.00 0.00 3.56
2025 2049 5.968387 GTAACAATACCATCTTGTCCTCG 57.032 43.478 0.00 0.00 35.84 4.63
2102 2126 7.872993 ACCTGTGATATTATATCACCTGAAACG 59.127 37.037 30.76 17.74 45.70 3.60
2317 2341 5.413309 ACTCCCTCAAAGACAATACTCAG 57.587 43.478 0.00 0.00 0.00 3.35
2324 2348 4.792068 ACAATCAACTCCCTCAAAGACAA 58.208 39.130 0.00 0.00 0.00 3.18
2504 2528 5.396884 CCAACCTGGTTATTTTGGTTTTCCA 60.397 40.000 12.53 0.00 40.39 3.53
2629 2668 0.956633 AACTGAGCTTGGTGCATGTG 59.043 50.000 0.00 0.00 45.94 3.21
2683 2728 2.413371 GCATCTCGGACAAAAGAACTGC 60.413 50.000 0.00 0.00 0.00 4.40
2700 2745 6.929049 TGCTAGTACACAATAATGGTAGCATC 59.071 38.462 8.07 0.00 34.86 3.91
3006 3158 1.398832 CCGTTTTTCTTTCGTACCGCC 60.399 52.381 0.00 0.00 0.00 6.13
3605 3761 5.165676 ACTTGACACAAATCTAATACGCGA 58.834 37.500 15.93 0.00 0.00 5.87
3606 3762 5.061684 TGACTTGACACAAATCTAATACGCG 59.938 40.000 3.53 3.53 0.00 6.01
3778 4060 6.843208 TGTCTGAAGTCAAAGTATCTCTACG 58.157 40.000 0.00 0.00 32.82 3.51
3803 4085 9.609346 GGTCCTTTTTAGTCTGCATATAAGTAA 57.391 33.333 0.00 0.00 0.00 2.24
3804 4086 7.924412 CGGTCCTTTTTAGTCTGCATATAAGTA 59.076 37.037 0.00 0.00 0.00 2.24
4012 4294 7.775093 TCATTAACCTGGTAGGATCAAGAATTG 59.225 37.037 0.00 0.00 42.86 2.32
4045 4327 7.666063 AGGAATAAGCTGGATTGCTAATTTT 57.334 32.000 12.31 0.00 43.24 1.82
4414 4696 2.821969 ACTGTTATGCAAGGAAAGCAGG 59.178 45.455 0.00 0.00 46.36 4.85
4419 4701 3.134574 ACCGACTGTTATGCAAGGAAA 57.865 42.857 0.00 0.00 0.00 3.13
4436 4718 4.090066 CGAGTTCAGTGAAAATGTCTACCG 59.910 45.833 7.25 0.00 31.21 4.02
4438 4720 6.526566 AACGAGTTCAGTGAAAATGTCTAC 57.473 37.500 7.25 0.00 31.21 2.59
4532 4814 4.776435 TTAGCACATGATGATCCTTCCA 57.224 40.909 0.00 0.00 0.00 3.53
4666 4948 1.615384 GGGCTGGACTTTGAGCAATCT 60.615 52.381 0.00 0.00 36.90 2.40
4783 5065 1.000938 CAAGCCCTTGTTTCAGCAGAC 60.001 52.381 0.00 0.00 35.92 3.51
4897 5179 4.510038 TTTGAGCTTCTGCAAAATCTCC 57.490 40.909 1.37 0.00 42.74 3.71
5008 5290 2.093288 GTGAAGCTCCATCATCACCTCA 60.093 50.000 3.06 0.00 36.94 3.86
5143 5425 5.462729 CACAGCACAAAAATGTTCAGCATTA 59.537 36.000 0.00 0.00 46.29 1.90
5203 5485 2.892852 CCAACCTTGCTCCATTCTTGAA 59.107 45.455 0.00 0.00 0.00 2.69
5318 5600 7.017950 AGGGATATCAGAAATATTGCTCCTTGA 59.982 37.037 4.83 0.00 0.00 3.02
5325 5607 7.254932 GGCGAATAGGGATATCAGAAATATTGC 60.255 40.741 4.83 0.00 0.00 3.56
5628 5910 9.683069 CAACTGTTAATGTTTCTTAAGATTGCT 57.317 29.630 5.89 0.00 30.67 3.91
5717 6001 1.485124 ACCATGCATGACCTCTACGA 58.515 50.000 28.31 0.00 0.00 3.43
5727 6011 4.924305 AGTAATAGCCAAACCATGCATG 57.076 40.909 20.19 20.19 0.00 4.06
5779 6063 8.906867 AGTGATAAACTGTGGATTTATTGGATG 58.093 33.333 0.00 0.00 37.88 3.51
5803 6087 5.245526 ACGGAAACCTAGAAGTATGAACAGT 59.754 40.000 0.00 0.00 0.00 3.55
5970 6254 5.121454 CAGAACAAGAGACAGGTAGCAAATC 59.879 44.000 0.00 0.00 0.00 2.17
5977 6261 4.282703 GGTTACCAGAACAAGAGACAGGTA 59.717 45.833 0.00 0.00 0.00 3.08
6002 6286 4.763793 AGCTGCACATCCATTATGGTATTC 59.236 41.667 11.39 0.00 40.16 1.75
6287 6571 7.807907 CCACATTAAACCAGTTTTACTGTCATC 59.192 37.037 0.37 0.00 44.50 2.92
6430 6714 2.031333 AGACACGAGGTGAAACGAGTAC 60.031 50.000 2.29 0.00 38.12 2.73
6578 6862 4.222588 CCTTAAAACCAAGGGATCATGCAA 59.777 41.667 0.00 0.00 41.30 4.08
6840 7124 4.503370 GTGCGTTACTCTTAGCATAGGAAC 59.497 45.833 0.00 0.00 41.88 3.62
6858 7142 2.526304 TTCTACTTCAAGCAGTGCGT 57.474 45.000 10.00 2.83 0.00 5.24
6859 7143 4.805719 TCATATTCTACTTCAAGCAGTGCG 59.194 41.667 10.00 0.00 0.00 5.34
6913 7197 8.350722 TGACTTATCAACGTATAGAACTCCATC 58.649 37.037 0.00 0.00 0.00 3.51
7000 7284 3.950397 GGGACCAATGTGAGTATTGTCA 58.050 45.455 0.00 0.00 36.54 3.58
7060 7344 4.511527 CACAATCTACAGAAGCAGACCAT 58.488 43.478 0.00 0.00 0.00 3.55
7162 7446 2.287308 TGCTTTGGAAAACGGAATGTCG 60.287 45.455 0.00 0.00 0.00 4.35
7171 7455 6.603237 AGCTTGTAAAATGCTTTGGAAAAC 57.397 33.333 0.00 0.00 35.86 2.43
7250 7534 4.472691 TCGACAAACAGAAGAAAGCATG 57.527 40.909 0.00 0.00 0.00 4.06
7506 7834 8.343366 CACTTACATTATCTGAAGTACGCTCTA 58.657 37.037 0.00 0.00 31.05 2.43
7724 8057 4.829968 ACATATATGAGAGCAGCACCATC 58.170 43.478 19.63 0.00 0.00 3.51
7749 8162 9.686683 AAAGGCTGTCATTAATTACTCAAGTAT 57.313 29.630 1.70 0.00 0.00 2.12
7756 8169 8.957466 GGAACTAAAAGGCTGTCATTAATTACT 58.043 33.333 1.70 0.00 0.00 2.24
7761 8174 5.475564 GGTGGAACTAAAAGGCTGTCATTAA 59.524 40.000 0.00 0.00 36.74 1.40
7776 8189 7.208064 AGCCTATTTTTAGATGGTGGAACTA 57.792 36.000 0.00 0.00 36.74 2.24
7781 8194 7.169158 TGAAAAGCCTATTTTTAGATGGTGG 57.831 36.000 0.00 0.00 30.78 4.61
7782 8195 9.657419 AATTGAAAAGCCTATTTTTAGATGGTG 57.343 29.630 0.00 0.00 30.78 4.17
7783 8196 9.657419 CAATTGAAAAGCCTATTTTTAGATGGT 57.343 29.630 0.00 0.00 30.78 3.55
7784 8197 8.606602 GCAATTGAAAAGCCTATTTTTAGATGG 58.393 33.333 10.34 0.00 30.78 3.51
7785 8198 9.153721 TGCAATTGAAAAGCCTATTTTTAGATG 57.846 29.630 10.34 0.00 30.78 2.90
7786 8199 9.154847 GTGCAATTGAAAAGCCTATTTTTAGAT 57.845 29.630 10.34 0.00 30.78 1.98
7787 8200 7.602265 GGTGCAATTGAAAAGCCTATTTTTAGA 59.398 33.333 10.34 0.00 30.78 2.10
7788 8201 7.387397 TGGTGCAATTGAAAAGCCTATTTTTAG 59.613 33.333 10.34 0.00 30.78 1.85
7789 8202 7.220030 TGGTGCAATTGAAAAGCCTATTTTTA 58.780 30.769 10.34 0.00 30.78 1.52
7790 8203 6.060788 TGGTGCAATTGAAAAGCCTATTTTT 58.939 32.000 10.34 0.00 33.19 1.94
7791 8204 5.619220 TGGTGCAATTGAAAAGCCTATTTT 58.381 33.333 10.34 0.00 0.00 1.82
7792 8205 5.226194 TGGTGCAATTGAAAAGCCTATTT 57.774 34.783 10.34 0.00 0.00 1.40
7793 8206 4.888326 TGGTGCAATTGAAAAGCCTATT 57.112 36.364 10.34 0.00 0.00 1.73
7794 8207 4.383335 CCATGGTGCAATTGAAAAGCCTAT 60.383 41.667 10.34 0.00 0.00 2.57
7795 8208 3.055963 CCATGGTGCAATTGAAAAGCCTA 60.056 43.478 10.34 0.00 0.00 3.93
7796 8209 2.289819 CCATGGTGCAATTGAAAAGCCT 60.290 45.455 10.34 0.00 0.00 4.58
7797 8210 2.078392 CCATGGTGCAATTGAAAAGCC 58.922 47.619 10.34 0.00 0.00 4.35
7798 8211 1.465777 GCCATGGTGCAATTGAAAAGC 59.534 47.619 14.67 4.13 0.00 3.51
7799 8212 2.739913 CAGCCATGGTGCAATTGAAAAG 59.260 45.455 14.67 0.00 0.00 2.27
7800 8213 2.550423 CCAGCCATGGTGCAATTGAAAA 60.550 45.455 14.67 0.00 42.17 2.29
7801 8214 1.002201 CCAGCCATGGTGCAATTGAAA 59.998 47.619 14.67 0.00 42.17 2.69
7802 8215 0.609151 CCAGCCATGGTGCAATTGAA 59.391 50.000 14.67 0.00 42.17 2.69
7803 8216 1.259142 CCCAGCCATGGTGCAATTGA 61.259 55.000 14.67 0.00 46.10 2.57
7804 8217 1.219664 CCCAGCCATGGTGCAATTG 59.780 57.895 14.67 0.00 46.10 2.32
7805 8218 0.837260 AACCCAGCCATGGTGCAATT 60.837 50.000 14.67 0.08 46.10 2.32
7806 8219 1.229272 AACCCAGCCATGGTGCAAT 60.229 52.632 14.67 0.00 46.10 3.56
7807 8220 2.200930 AACCCAGCCATGGTGCAA 59.799 55.556 14.67 0.00 46.10 4.08
7808 8221 2.601067 CAACCCAGCCATGGTGCA 60.601 61.111 14.67 0.00 46.10 4.57
7809 8222 2.601367 ACAACCCAGCCATGGTGC 60.601 61.111 14.67 0.00 46.10 5.01
7818 8231 6.659242 ACATTTTATGAACTAGGACAACCCAG 59.341 38.462 0.00 0.00 37.41 4.45
7829 8270 6.065374 ACACACACCCACATTTTATGAACTA 58.935 36.000 0.00 0.00 0.00 2.24
7836 8277 6.593807 AGTAACTACACACACCCACATTTTA 58.406 36.000 0.00 0.00 0.00 1.52
7846 8287 6.805760 GCTTCTAGGTAAGTAACTACACACAC 59.194 42.308 0.00 0.00 0.00 3.82
7847 8288 6.718454 AGCTTCTAGGTAAGTAACTACACACA 59.282 38.462 0.00 0.00 0.00 3.72
7848 8289 7.155655 AGCTTCTAGGTAAGTAACTACACAC 57.844 40.000 0.00 0.00 0.00 3.82
7849 8290 7.337942 GGTAGCTTCTAGGTAAGTAACTACACA 59.662 40.741 0.00 0.00 31.82 3.72
7850 8291 7.337942 TGGTAGCTTCTAGGTAAGTAACTACAC 59.662 40.741 0.00 0.00 31.82 2.90
7851 8292 7.405292 TGGTAGCTTCTAGGTAAGTAACTACA 58.595 38.462 0.00 0.00 31.82 2.74
7852 8293 7.872113 TGGTAGCTTCTAGGTAAGTAACTAC 57.128 40.000 0.00 0.00 29.05 2.73
7853 8294 7.504911 CCATGGTAGCTTCTAGGTAAGTAACTA 59.495 40.741 2.57 0.00 29.05 2.24
7854 8295 6.324254 CCATGGTAGCTTCTAGGTAAGTAACT 59.676 42.308 2.57 0.00 29.05 2.24
7874 8325 7.865706 ATAAAAACTAACTGTAGAGCCATGG 57.134 36.000 7.63 7.63 0.00 3.66
7890 8341 6.238648 GCCATGGTAGAACGCATATAAAAACT 60.239 38.462 14.67 0.00 0.00 2.66
7893 8344 5.373222 AGCCATGGTAGAACGCATATAAAA 58.627 37.500 14.67 0.00 0.00 1.52
7910 8362 5.295292 ACGAGAAGTGAAATATTGAGCCATG 59.705 40.000 0.00 0.00 0.00 3.66
7911 8363 5.431765 ACGAGAAGTGAAATATTGAGCCAT 58.568 37.500 0.00 0.00 0.00 4.40
7913 8365 5.803020 AACGAGAAGTGAAATATTGAGCC 57.197 39.130 0.00 0.00 0.00 4.70
7914 8366 9.031360 TGTATAACGAGAAGTGAAATATTGAGC 57.969 33.333 0.00 0.00 0.00 4.26
7933 8714 9.744468 AACACCAAAGAGTGAAAAATGTATAAC 57.256 29.630 0.00 0.00 40.34 1.89
7981 8766 3.795877 AGCACAACAACCTGGATTTTTG 58.204 40.909 0.00 3.79 0.00 2.44
7991 8776 2.031683 GTGTCAGTGTAGCACAACAACC 59.968 50.000 8.38 0.00 35.34 3.77
7992 8777 2.936498 AGTGTCAGTGTAGCACAACAAC 59.064 45.455 14.15 5.09 35.34 3.32
8015 8801 5.588648 GCTTAGTGGAAATACCTGCAATACA 59.411 40.000 0.00 0.00 39.86 2.29
8117 8903 6.396829 AGAAAATCCACTTTCAACAGAAGG 57.603 37.500 0.00 0.00 37.70 3.46
8121 8955 6.473455 GTCACAAGAAAATCCACTTTCAACAG 59.527 38.462 0.00 0.00 37.70 3.16
8127 8961 8.463930 TGAATAGTCACAAGAAAATCCACTTT 57.536 30.769 0.00 0.00 0.00 2.66
8144 8984 9.274065 GGTGTCAATAACGAAAATTGAATAGTC 57.726 33.333 11.45 0.00 43.12 2.59
8181 9038 8.765636 TGTGATCCACAAGTTTCACAAACTGC 62.766 42.308 5.12 0.00 43.48 4.40
8318 9178 9.624697 GCAACACATTAAGATTTCTTGTTATGA 57.375 29.630 3.07 0.00 37.40 2.15
8339 9199 6.463360 TGTATGATCTCTAACAACTGCAACA 58.537 36.000 0.00 0.00 0.00 3.33
8341 9201 7.386059 TCTTGTATGATCTCTAACAACTGCAA 58.614 34.615 0.00 0.00 0.00 4.08
8437 9297 5.243507 TCAAATTTGGATTCAGTGCAGCTAA 59.756 36.000 17.90 0.00 0.00 3.09
8439 9299 3.575256 TCAAATTTGGATTCAGTGCAGCT 59.425 39.130 17.90 0.00 0.00 4.24
8508 9368 4.403734 GGAGGGAGTAACTGATAGAGAGG 58.596 52.174 0.00 0.00 0.00 3.69
8521 9381 7.095183 TCTTATATTAGGAACGGAGGGAGTA 57.905 40.000 0.00 0.00 0.00 2.59
8522 9382 5.961897 TCTTATATTAGGAACGGAGGGAGT 58.038 41.667 0.00 0.00 0.00 3.85
8523 9383 6.689554 GTTCTTATATTAGGAACGGAGGGAG 58.310 44.000 0.00 0.00 35.52 4.30
8524 9384 6.661304 GTTCTTATATTAGGAACGGAGGGA 57.339 41.667 0.00 0.00 35.52 4.20
8533 9393 9.715121 AGTGTCAAAAACGTTCTTATATTAGGA 57.285 29.630 0.00 0.00 0.00 2.94
8538 9398 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
8539 9399 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
8540 9400 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
8541 9401 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
8542 9402 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
8543 9403 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
8544 9404 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
8557 9417 6.525629 AGAGCATTTTTGACACTAGTGTAGT 58.474 36.000 27.98 6.32 45.05 2.73
8558 9418 7.426929 AAGAGCATTTTTGACACTAGTGTAG 57.573 36.000 27.98 12.67 45.05 2.74
8566 9426 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
8567 9427 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
8570 9430 9.865321 CCATCCCATAATATAAGAGCATTTTTG 57.135 33.333 0.00 0.00 0.00 2.44
8571 9431 9.827198 TCCATCCCATAATATAAGAGCATTTTT 57.173 29.630 0.00 0.00 0.00 1.94
8572 9432 9.471702 CTCCATCCCATAATATAAGAGCATTTT 57.528 33.333 0.00 0.00 0.00 1.82
8573 9433 8.057623 CCTCCATCCCATAATATAAGAGCATTT 58.942 37.037 0.00 0.00 0.00 2.32
8574 9434 7.367186 CCCTCCATCCCATAATATAAGAGCATT 60.367 40.741 0.00 0.00 0.00 3.56
8575 9435 6.102321 CCCTCCATCCCATAATATAAGAGCAT 59.898 42.308 0.00 0.00 0.00 3.79
8576 9436 5.429762 CCCTCCATCCCATAATATAAGAGCA 59.570 44.000 0.00 0.00 0.00 4.26
8577 9437 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
8578 9438 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
8579 9439 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
8580 9440 7.846823 AGTACTCCCTCCATCCCATAATATAAG 59.153 40.741 0.00 0.00 0.00 1.73
8581 9441 7.729350 AGTACTCCCTCCATCCCATAATATAA 58.271 38.462 0.00 0.00 0.00 0.98
8582 9442 7.312162 AGTACTCCCTCCATCCCATAATATA 57.688 40.000 0.00 0.00 0.00 0.86
8583 9443 6.185677 AGTACTCCCTCCATCCCATAATAT 57.814 41.667 0.00 0.00 0.00 1.28
8584 9444 5.633473 AGTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
8585 9445 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
8586 9446 4.295905 AAGTACTCCCTCCATCCCATAA 57.704 45.455 0.00 0.00 0.00 1.90
8587 9447 4.295905 AAAGTACTCCCTCCATCCCATA 57.704 45.455 0.00 0.00 0.00 2.74
8588 9448 2.897823 AAGTACTCCCTCCATCCCAT 57.102 50.000 0.00 0.00 0.00 4.00
8589 9449 2.661176 AAAGTACTCCCTCCATCCCA 57.339 50.000 0.00 0.00 0.00 4.37
8590 9450 4.473922 AGTAAAAAGTACTCCCTCCATCCC 59.526 45.833 0.00 0.00 0.00 3.85
8591 9451 5.695424 AGTAAAAAGTACTCCCTCCATCC 57.305 43.478 0.00 0.00 0.00 3.51
8592 9452 7.421087 ACTAGTAAAAAGTACTCCCTCCATC 57.579 40.000 0.00 0.00 0.00 3.51
8593 9453 7.809880 AACTAGTAAAAAGTACTCCCTCCAT 57.190 36.000 0.00 0.00 0.00 3.41
8594 9454 7.447594 CAAACTAGTAAAAAGTACTCCCTCCA 58.552 38.462 0.00 0.00 0.00 3.86
8595 9455 6.370994 GCAAACTAGTAAAAAGTACTCCCTCC 59.629 42.308 0.00 0.00 0.00 4.30
8596 9456 7.160049 AGCAAACTAGTAAAAAGTACTCCCTC 58.840 38.462 0.00 0.00 0.00 4.30
8597 9457 7.075851 AGCAAACTAGTAAAAAGTACTCCCT 57.924 36.000 0.00 0.00 0.00 4.20
8598 9458 8.715998 GTTAGCAAACTAGTAAAAAGTACTCCC 58.284 37.037 0.00 0.00 32.54 4.30
8599 9459 9.486497 AGTTAGCAAACTAGTAAAAAGTACTCC 57.514 33.333 0.00 0.00 44.26 3.85
8637 9497 5.389778 CATCGTTGTTGCTATGCTGTTAAA 58.610 37.500 0.00 0.00 0.00 1.52
8801 9661 8.055986 GCGCTTGTCTTAATTAATAAAAATGGC 58.944 33.333 0.00 0.00 0.00 4.40
8821 9681 8.551205 TCTTACATCAAGATATTAAAGCGCTTG 58.449 33.333 25.80 8.66 38.39 4.01
8846 9706 7.226918 AGTCCACAGTTTCTTTTAGCTTAAGTC 59.773 37.037 4.02 0.00 0.00 3.01
8920 9782 5.657474 ACTGCAAATATTCATGCCAGAAAG 58.343 37.500 9.15 3.25 41.87 2.62
8933 9795 6.942576 ACTGGAACTGAAACTACTGCAAATAT 59.057 34.615 0.00 0.00 0.00 1.28
8973 9835 8.903820 GCCAATATACAGTAACTTTCAGGAAAT 58.096 33.333 0.00 0.00 0.00 2.17
8989 9851 5.087391 TGGTGTTAGTTCGCCAATATACA 57.913 39.130 0.00 0.00 43.71 2.29
9001 9863 5.445964 AGATCAAAAGGTGTGGTGTTAGTT 58.554 37.500 0.00 0.00 0.00 2.24
9012 9874 5.072741 TCCTTTCCTGAAGATCAAAAGGTG 58.927 41.667 17.04 1.55 41.61 4.00
9021 9884 3.715834 CTCCCTCATCCTTTCCTGAAGAT 59.284 47.826 0.00 0.00 37.57 2.40
9022 9885 3.110705 CTCCCTCATCCTTTCCTGAAGA 58.889 50.000 0.00 0.00 37.57 2.87
9103 9966 0.250234 GGCAGCCAGTGTCAGTATCA 59.750 55.000 6.55 0.00 0.00 2.15
9218 10081 0.700564 AGCTCCACACCCAATCATGT 59.299 50.000 0.00 0.00 0.00 3.21
9219 10082 1.843368 AAGCTCCACACCCAATCATG 58.157 50.000 0.00 0.00 0.00 3.07
9476 10339 4.111916 CCAATCATGTCGCAAAATTACCC 58.888 43.478 0.00 0.00 0.00 3.69
9477 10340 4.111916 CCCAATCATGTCGCAAAATTACC 58.888 43.478 0.00 0.00 0.00 2.85
9478 10341 4.562394 CACCCAATCATGTCGCAAAATTAC 59.438 41.667 0.00 0.00 0.00 1.89
9479 10342 4.219507 ACACCCAATCATGTCGCAAAATTA 59.780 37.500 0.00 0.00 0.00 1.40
9480 10343 3.006752 ACACCCAATCATGTCGCAAAATT 59.993 39.130 0.00 0.00 0.00 1.82
9481 10344 2.562298 ACACCCAATCATGTCGCAAAAT 59.438 40.909 0.00 0.00 0.00 1.82
9482 10345 1.959985 ACACCCAATCATGTCGCAAAA 59.040 42.857 0.00 0.00 0.00 2.44
9483 10346 1.269174 CACACCCAATCATGTCGCAAA 59.731 47.619 0.00 0.00 0.00 3.68
9484 10347 0.880441 CACACCCAATCATGTCGCAA 59.120 50.000 0.00 0.00 0.00 4.85
9485 10348 0.959867 CCACACCCAATCATGTCGCA 60.960 55.000 0.00 0.00 0.00 5.10
9486 10349 0.676466 TCCACACCCAATCATGTCGC 60.676 55.000 0.00 0.00 0.00 5.19
9487 10350 1.372582 CTCCACACCCAATCATGTCG 58.627 55.000 0.00 0.00 0.00 4.35
9488 10351 1.098050 GCTCCACACCCAATCATGTC 58.902 55.000 0.00 0.00 0.00 3.06
9848 10727 4.895668 AAGTCATTACACGTTCCCCTTA 57.104 40.909 0.00 0.00 0.00 2.69
9892 10771 7.800380 GCATGATCCTTATCAACAAAATAGTCG 59.200 37.037 0.00 0.00 45.12 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.