Multiple sequence alignment - TraesCS1B01G297700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G297700 chr1B 100.000 6119 0 0 1 6119 517914269 517908151 0.000000e+00 11300.0
1 TraesCS1B01G297700 chr1B 94.688 433 18 3 1 431 383913788 383914217 0.000000e+00 667.0
2 TraesCS1B01G297700 chr1D 91.611 5102 239 89 464 5473 385628746 385623742 0.000000e+00 6876.0
3 TraesCS1B01G297700 chr1D 92.551 443 20 8 5684 6119 385622285 385621849 1.870000e-174 623.0
4 TraesCS1B01G297700 chr1A 94.189 4302 164 34 1413 5682 485348946 485344699 0.000000e+00 6481.0
5 TraesCS1B01G297700 chr1A 93.825 583 29 5 825 1402 485349574 485348994 0.000000e+00 870.0
6 TraesCS1B01G297700 chr1A 89.091 440 20 11 5684 6119 485344535 485344120 7.030000e-144 521.0
7 TraesCS1B01G297700 chr1A 92.424 330 11 5 463 782 485349897 485349572 5.590000e-125 459.0
8 TraesCS1B01G297700 chr1A 92.308 65 3 2 2993 3055 80687919 80687855 2.350000e-14 91.6
9 TraesCS1B01G297700 chr3D 88.663 2117 158 42 2520 4592 560106702 560108780 0.000000e+00 2505.0
10 TraesCS1B01G297700 chr3D 84.348 1035 90 34 4710 5682 560109264 560110288 0.000000e+00 948.0
11 TraesCS1B01G297700 chr3D 87.895 380 26 8 2027 2396 560106304 560106673 4.380000e-116 429.0
12 TraesCS1B01G297700 chr3D 86.641 262 19 7 5276 5524 259363230 259362972 6.040000e-70 276.0
13 TraesCS1B01G297700 chr3D 87.013 231 19 6 1618 1848 560106087 560106306 3.660000e-62 250.0
14 TraesCS1B01G297700 chr3D 88.966 145 7 4 4990 5125 560231829 560231973 2.930000e-38 171.0
15 TraesCS1B01G297700 chr3B 90.163 1596 130 18 3055 4633 744212978 744214563 0.000000e+00 2052.0
16 TraesCS1B01G297700 chr3B 87.110 993 62 25 2029 2991 744211981 744212937 0.000000e+00 1064.0
17 TraesCS1B01G297700 chr3B 95.370 432 15 5 1 430 15992895 15993323 0.000000e+00 682.0
18 TraesCS1B01G297700 chr3B 90.652 460 40 3 4711 5167 744215080 744215539 5.240000e-170 608.0
19 TraesCS1B01G297700 chr3B 80.309 259 42 8 5417 5670 747495914 747495660 2.910000e-43 187.0
20 TraesCS1B01G297700 chr3B 79.724 217 15 10 977 1180 744211124 744211324 4.980000e-26 130.0
21 TraesCS1B01G297700 chr3A 86.682 1697 152 39 2027 3691 696239791 696241445 0.000000e+00 1814.0
22 TraesCS1B01G297700 chr3A 90.183 927 71 11 3719 4633 696241442 696242360 0.000000e+00 1190.0
23 TraesCS1B01G297700 chr3A 83.883 1030 97 28 4711 5682 629013574 629014592 0.000000e+00 918.0
24 TraesCS1B01G297700 chr3A 92.184 435 31 2 4736 5167 696242898 696243332 4.050000e-171 612.0
25 TraesCS1B01G297700 chr3A 92.388 289 20 1 4345 4633 629012772 629013058 1.590000e-110 411.0
26 TraesCS1B01G297700 chr3A 86.207 348 22 13 1509 1848 696239464 696239793 2.710000e-93 353.0
27 TraesCS1B01G297700 chr3A 82.648 438 39 17 5276 5682 696243437 696243868 2.710000e-93 353.0
28 TraesCS1B01G297700 chr3A 84.354 294 44 2 3387 3678 629015834 629016127 2.790000e-73 287.0
29 TraesCS1B01G297700 chr3A 85.294 272 36 3 3387 3654 696245082 696245353 1.680000e-70 278.0
30 TraesCS1B01G297700 chr3A 83.429 175 13 9 4970 5129 629090373 629090200 1.370000e-31 148.0
31 TraesCS1B01G297700 chr3A 83.429 175 13 9 4967 5126 696330462 696330635 1.370000e-31 148.0
32 TraesCS1B01G297700 chr3A 90.110 91 6 2 5590 5680 181115671 181115758 1.390000e-21 115.0
33 TraesCS1B01G297700 chr3A 89.011 91 7 2 5590 5680 180540121 180540034 6.480000e-20 110.0
34 TraesCS1B01G297700 chr7B 97.907 430 8 1 1 430 140858340 140858768 0.000000e+00 743.0
35 TraesCS1B01G297700 chr7B 96.065 432 14 3 1 431 590462265 590461836 0.000000e+00 701.0
36 TraesCS1B01G297700 chr7B 95.128 431 18 3 1 430 139161541 139161113 0.000000e+00 676.0
37 TraesCS1B01G297700 chr7B 95.105 429 16 4 1 427 714551171 714550746 0.000000e+00 671.0
38 TraesCS1B01G297700 chr7B 94.457 433 18 6 1 430 649462521 649462950 0.000000e+00 662.0
39 TraesCS1B01G297700 chr2B 96.056 431 16 1 1 431 373908881 373909310 0.000000e+00 701.0
40 TraesCS1B01G297700 chr2B 95.172 435 16 3 1 430 170089183 170088749 0.000000e+00 682.0
41 TraesCS1B01G297700 chr2B 89.011 91 7 2 5590 5680 480430239 480430326 6.480000e-20 110.0
42 TraesCS1B01G297700 chr2B 93.846 65 2 1 2993 3055 491348037 491347973 5.050000e-16 97.1
43 TraesCS1B01G297700 chr7A 83.441 465 30 12 1758 2220 23790018 23790437 7.440000e-104 388.0
44 TraesCS1B01G297700 chr7A 83.441 465 30 9 1758 2220 23898047 23898466 7.440000e-104 388.0
45 TraesCS1B01G297700 chr7A 82.796 465 33 9 1758 2220 24283275 24283694 7.490000e-99 372.0
46 TraesCS1B01G297700 chr7A 82.655 467 32 10 1758 2220 24097702 24098123 9.690000e-98 368.0
47 TraesCS1B01G297700 chr7A 87.023 262 18 7 5276 5524 671908093 671907835 1.300000e-71 281.0
48 TraesCS1B01G297700 chr7A 90.598 117 11 0 1642 1758 23897846 23897962 8.210000e-34 156.0
49 TraesCS1B01G297700 chr7A 90.598 117 11 0 1642 1758 24097501 24097617 8.210000e-34 156.0
50 TraesCS1B01G297700 chr7A 89.744 117 12 0 1642 1758 23789817 23789933 3.820000e-32 150.0
51 TraesCS1B01G297700 chr4A 82.641 409 48 14 2043 2447 706496134 706495745 2.110000e-89 340.0
52 TraesCS1B01G297700 chr4A 85.657 251 22 8 1758 2008 706496376 706496140 1.020000e-62 252.0
53 TraesCS1B01G297700 chr4A 92.373 118 9 0 1645 1762 706496574 706496457 1.050000e-37 169.0
54 TraesCS1B01G297700 chr4A 90.000 90 6 2 5591 5680 738304087 738304001 5.010000e-21 113.0
55 TraesCS1B01G297700 chr4A 93.846 65 2 1 2993 3055 488252318 488252254 5.050000e-16 97.1
56 TraesCS1B01G297700 chr6D 85.238 210 27 4 1542 1750 21353667 21353873 4.800000e-51 213.0
57 TraesCS1B01G297700 chr4D 77.075 253 34 13 5803 6044 416766511 416766750 2.320000e-24 124.0
58 TraesCS1B01G297700 chr4D 93.846 65 2 1 2993 3055 93609396 93609460 5.050000e-16 97.1
59 TraesCS1B01G297700 chrUn 88.889 90 7 2 5591 5680 417727795 417727881 2.330000e-19 108.0
60 TraesCS1B01G297700 chrUn 94.915 59 1 1 2993 3049 214048960 214049018 2.350000e-14 91.6
61 TraesCS1B01G297700 chrUn 92.308 65 3 1 2993 3055 240296125 240296061 2.350000e-14 91.6
62 TraesCS1B01G297700 chr4B 88.889 90 7 2 5591 5680 101490948 101491034 2.330000e-19 108.0
63 TraesCS1B01G297700 chr4B 88.889 90 7 2 5591 5680 276890821 276890907 2.330000e-19 108.0
64 TraesCS1B01G297700 chr4B 88.889 90 7 2 5591 5680 463531790 463531704 2.330000e-19 108.0
65 TraesCS1B01G297700 chr4B 95.312 64 2 1 2993 3055 132053264 132053327 3.900000e-17 100.0
66 TraesCS1B01G297700 chr6B 93.846 65 2 1 2993 3055 680933290 680933226 5.050000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G297700 chr1B 517908151 517914269 6118 True 11300.000000 11300 100.000000 1 6119 1 chr1B.!!$R1 6118
1 TraesCS1B01G297700 chr1D 385621849 385628746 6897 True 3749.500000 6876 92.081000 464 6119 2 chr1D.!!$R1 5655
2 TraesCS1B01G297700 chr1A 485344120 485349897 5777 True 2082.750000 6481 92.382250 463 6119 4 chr1A.!!$R2 5656
3 TraesCS1B01G297700 chr3D 560106087 560110288 4201 False 1033.000000 2505 86.979750 1618 5682 4 chr3D.!!$F2 4064
4 TraesCS1B01G297700 chr3B 744211124 744215539 4415 False 963.500000 2052 86.912250 977 5167 4 chr3B.!!$F2 4190
5 TraesCS1B01G297700 chr3A 696239464 696245353 5889 False 766.666667 1814 87.199667 1509 5682 6 chr3A.!!$F4 4173
6 TraesCS1B01G297700 chr3A 629012772 629016127 3355 False 538.666667 918 86.875000 3387 5682 3 chr3A.!!$F3 2295
7 TraesCS1B01G297700 chr7A 23897846 23898466 620 False 272.000000 388 87.019500 1642 2220 2 chr7A.!!$F3 578
8 TraesCS1B01G297700 chr7A 23789817 23790437 620 False 269.000000 388 86.592500 1642 2220 2 chr7A.!!$F2 578
9 TraesCS1B01G297700 chr7A 24097501 24098123 622 False 262.000000 368 86.626500 1642 2220 2 chr7A.!!$F4 578
10 TraesCS1B01G297700 chr4A 706495745 706496574 829 True 253.666667 340 86.890333 1645 2447 3 chr4A.!!$R3 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 426 0.107410 TGCGGGCGTCAAATAGGATT 60.107 50.000 0.0 0.0 0.00 3.01 F
746 766 0.108756 CCTCGTCCGTTCCTTCCTTC 60.109 60.000 0.0 0.0 0.00 3.46 F
747 767 0.108756 CTCGTCCGTTCCTTCCTTCC 60.109 60.000 0.0 0.0 0.00 3.46 F
1212 1273 0.676782 GTGCGCAAGGAGGTAATGGT 60.677 55.000 14.0 0.0 39.66 3.55 F
1942 2151 1.965643 TGTGCGAGGGTTAGTGTTAGT 59.034 47.619 0.0 0.0 0.00 2.24 F
3494 3751 1.769026 TCCCCTCTCGATGAAGTCTG 58.231 55.000 0.0 0.0 0.00 3.51 F
4039 4306 1.901833 GTGAGTGCATTTGGGGGAATT 59.098 47.619 0.0 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 2127 0.511221 CACTAACCCTCGCACAAACG 59.489 55.000 0.00 0.0 0.00 3.60 R
2100 2312 0.680280 CAGCTGCTTCCAGGCTTGAT 60.680 55.000 0.00 0.0 39.54 2.57 R
2580 2817 4.151157 GCTGCAATCACCAAAACAGAAATC 59.849 41.667 0.00 0.0 0.00 2.17 R
2980 3236 4.494091 ACATCTTATAGCTGCAACCAGT 57.506 40.909 1.02 0.0 41.26 4.00 R
3792 4059 0.882927 TCGCCGAACTTTCCAACAGG 60.883 55.000 0.00 0.0 0.00 4.00 R
4461 4740 0.251386 AGCTCTCTCAGAACCCGTCA 60.251 55.000 0.00 0.0 0.00 4.35 R
5507 7373 0.251354 ACCTACACTCAGGCAGCATG 59.749 55.000 0.00 0.0 39.53 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.762045 ACACAATGAACAATTCTACAGTGC 58.238 37.500 0.00 0.00 32.78 4.40
43 44 5.299028 ACACAATGAACAATTCTACAGTGCA 59.701 36.000 0.00 0.00 32.78 4.57
44 45 6.183360 ACACAATGAACAATTCTACAGTGCAA 60.183 34.615 0.00 0.00 32.78 4.08
45 46 6.361481 CACAATGAACAATTCTACAGTGCAAG 59.639 38.462 0.00 0.00 32.78 4.01
46 47 5.633830 ATGAACAATTCTACAGTGCAAGG 57.366 39.130 0.00 0.00 0.00 3.61
47 48 4.460263 TGAACAATTCTACAGTGCAAGGT 58.540 39.130 0.00 0.00 0.00 3.50
48 49 4.275689 TGAACAATTCTACAGTGCAAGGTG 59.724 41.667 0.00 0.00 0.00 4.00
49 50 4.085357 ACAATTCTACAGTGCAAGGTGA 57.915 40.909 0.00 0.00 0.00 4.02
50 51 4.460263 ACAATTCTACAGTGCAAGGTGAA 58.540 39.130 0.00 0.00 0.00 3.18
51 52 4.275936 ACAATTCTACAGTGCAAGGTGAAC 59.724 41.667 0.00 0.00 0.00 3.18
52 53 3.838244 TTCTACAGTGCAAGGTGAACT 57.162 42.857 0.00 0.00 36.46 3.01
53 54 4.948341 TTCTACAGTGCAAGGTGAACTA 57.052 40.909 0.00 0.00 32.81 2.24
54 55 5.483685 TTCTACAGTGCAAGGTGAACTAT 57.516 39.130 0.00 0.00 32.81 2.12
55 56 4.820897 TCTACAGTGCAAGGTGAACTATG 58.179 43.478 0.00 0.00 32.81 2.23
56 57 3.492102 ACAGTGCAAGGTGAACTATGT 57.508 42.857 0.00 0.00 32.81 2.29
57 58 3.403038 ACAGTGCAAGGTGAACTATGTC 58.597 45.455 0.00 0.00 32.81 3.06
58 59 3.181455 ACAGTGCAAGGTGAACTATGTCA 60.181 43.478 0.00 0.00 32.81 3.58
59 60 4.005650 CAGTGCAAGGTGAACTATGTCAT 58.994 43.478 0.00 0.00 32.81 3.06
60 61 5.178061 CAGTGCAAGGTGAACTATGTCATA 58.822 41.667 0.00 0.00 32.81 2.15
61 62 5.643348 CAGTGCAAGGTGAACTATGTCATAA 59.357 40.000 0.00 0.00 32.81 1.90
62 63 6.317140 CAGTGCAAGGTGAACTATGTCATAAT 59.683 38.462 0.00 0.00 32.81 1.28
63 64 7.495606 CAGTGCAAGGTGAACTATGTCATAATA 59.504 37.037 0.00 0.00 32.81 0.98
64 65 8.213679 AGTGCAAGGTGAACTATGTCATAATAT 58.786 33.333 0.00 0.00 33.56 1.28
65 66 9.489084 GTGCAAGGTGAACTATGTCATAATATA 57.511 33.333 0.00 0.00 0.00 0.86
109 110 7.678194 ACATTGAAGATTTTTGTAACACACG 57.322 32.000 0.00 0.00 0.00 4.49
110 111 6.695278 ACATTGAAGATTTTTGTAACACACGG 59.305 34.615 0.00 0.00 0.00 4.94
111 112 5.821516 TGAAGATTTTTGTAACACACGGT 57.178 34.783 0.00 0.00 0.00 4.83
112 113 5.574082 TGAAGATTTTTGTAACACACGGTG 58.426 37.500 6.58 6.58 39.75 4.94
113 114 5.354513 TGAAGATTTTTGTAACACACGGTGA 59.645 36.000 16.29 0.00 36.96 4.02
114 115 5.821516 AGATTTTTGTAACACACGGTGAA 57.178 34.783 16.29 0.00 36.96 3.18
115 116 5.575019 AGATTTTTGTAACACACGGTGAAC 58.425 37.500 16.29 7.77 36.96 3.18
116 117 5.355910 AGATTTTTGTAACACACGGTGAACT 59.644 36.000 16.29 0.63 36.96 3.01
117 118 5.373981 TTTTTGTAACACACGGTGAACTT 57.626 34.783 16.29 5.18 36.96 2.66
118 119 5.373981 TTTTGTAACACACGGTGAACTTT 57.626 34.783 16.29 4.57 36.96 2.66
119 120 5.373981 TTTGTAACACACGGTGAACTTTT 57.626 34.783 16.29 2.88 36.96 2.27
120 121 5.373981 TTGTAACACACGGTGAACTTTTT 57.626 34.783 16.29 1.22 36.96 1.94
121 122 6.492007 TTGTAACACACGGTGAACTTTTTA 57.508 33.333 16.29 0.33 36.96 1.52
122 123 6.680874 TGTAACACACGGTGAACTTTTTAT 57.319 33.333 16.29 0.00 36.96 1.40
123 124 7.783090 TGTAACACACGGTGAACTTTTTATA 57.217 32.000 16.29 0.00 36.96 0.98
124 125 7.629130 TGTAACACACGGTGAACTTTTTATAC 58.371 34.615 16.29 5.45 36.96 1.47
125 126 6.680874 AACACACGGTGAACTTTTTATACA 57.319 33.333 16.29 0.00 36.96 2.29
126 127 6.680874 ACACACGGTGAACTTTTTATACAA 57.319 33.333 16.29 0.00 36.96 2.41
127 128 7.086230 ACACACGGTGAACTTTTTATACAAA 57.914 32.000 16.29 0.00 36.96 2.83
128 129 7.708998 ACACACGGTGAACTTTTTATACAAAT 58.291 30.769 16.29 0.00 36.96 2.32
129 130 8.838365 ACACACGGTGAACTTTTTATACAAATA 58.162 29.630 16.29 0.00 36.96 1.40
130 131 9.109533 CACACGGTGAACTTTTTATACAAATAC 57.890 33.333 16.29 0.00 35.23 1.89
131 132 8.838365 ACACGGTGAACTTTTTATACAAATACA 58.162 29.630 16.29 0.00 0.00 2.29
132 133 9.109533 CACGGTGAACTTTTTATACAAATACAC 57.890 33.333 0.74 0.00 0.00 2.90
133 134 8.838365 ACGGTGAACTTTTTATACAAATACACA 58.162 29.630 0.00 0.00 0.00 3.72
134 135 9.666626 CGGTGAACTTTTTATACAAATACACAA 57.333 29.630 0.00 0.00 0.00 3.33
154 155 8.908786 ACACAATAATGAGAAGAAGAACAGAA 57.091 30.769 0.00 0.00 0.00 3.02
155 156 9.342308 ACACAATAATGAGAAGAAGAACAGAAA 57.658 29.630 0.00 0.00 0.00 2.52
156 157 9.604626 CACAATAATGAGAAGAAGAACAGAAAC 57.395 33.333 0.00 0.00 0.00 2.78
157 158 9.342308 ACAATAATGAGAAGAAGAACAGAAACA 57.658 29.630 0.00 0.00 0.00 2.83
158 159 9.823098 CAATAATGAGAAGAAGAACAGAAACAG 57.177 33.333 0.00 0.00 0.00 3.16
159 160 6.874288 AATGAGAAGAAGAACAGAAACAGG 57.126 37.500 0.00 0.00 0.00 4.00
160 161 5.614324 TGAGAAGAAGAACAGAAACAGGA 57.386 39.130 0.00 0.00 0.00 3.86
161 162 5.989477 TGAGAAGAAGAACAGAAACAGGAA 58.011 37.500 0.00 0.00 0.00 3.36
162 163 6.414732 TGAGAAGAAGAACAGAAACAGGAAA 58.585 36.000 0.00 0.00 0.00 3.13
163 164 7.056635 TGAGAAGAAGAACAGAAACAGGAAAT 58.943 34.615 0.00 0.00 0.00 2.17
164 165 8.210946 TGAGAAGAAGAACAGAAACAGGAAATA 58.789 33.333 0.00 0.00 0.00 1.40
165 166 8.980481 AGAAGAAGAACAGAAACAGGAAATAA 57.020 30.769 0.00 0.00 0.00 1.40
166 167 9.408648 AGAAGAAGAACAGAAACAGGAAATAAA 57.591 29.630 0.00 0.00 0.00 1.40
193 194 9.810545 AAAGGAAACGTAAATGAAAGAAAATGA 57.189 25.926 0.00 0.00 0.00 2.57
194 195 9.810545 AAGGAAACGTAAATGAAAGAAAATGAA 57.189 25.926 0.00 0.00 0.00 2.57
195 196 9.810545 AGGAAACGTAAATGAAAGAAAATGAAA 57.189 25.926 0.00 0.00 0.00 2.69
198 199 9.810545 AAACGTAAATGAAAGAAAATGAAAGGA 57.189 25.926 0.00 0.00 0.00 3.36
199 200 8.797266 ACGTAAATGAAAGAAAATGAAAGGAC 57.203 30.769 0.00 0.00 0.00 3.85
200 201 8.410141 ACGTAAATGAAAGAAAATGAAAGGACA 58.590 29.630 0.00 0.00 0.00 4.02
201 202 9.243637 CGTAAATGAAAGAAAATGAAAGGACAA 57.756 29.630 0.00 0.00 0.00 3.18
206 207 8.491331 TGAAAGAAAATGAAAGGACAAAAAGG 57.509 30.769 0.00 0.00 0.00 3.11
207 208 8.317679 TGAAAGAAAATGAAAGGACAAAAAGGA 58.682 29.630 0.00 0.00 0.00 3.36
208 209 9.161629 GAAAGAAAATGAAAGGACAAAAAGGAA 57.838 29.630 0.00 0.00 0.00 3.36
209 210 9.685276 AAAGAAAATGAAAGGACAAAAAGGAAT 57.315 25.926 0.00 0.00 0.00 3.01
210 211 8.893219 AGAAAATGAAAGGACAAAAAGGAATC 57.107 30.769 0.00 0.00 0.00 2.52
211 212 8.485392 AGAAAATGAAAGGACAAAAAGGAATCA 58.515 29.630 0.00 0.00 0.00 2.57
212 213 9.108284 GAAAATGAAAGGACAAAAAGGAATCAA 57.892 29.630 0.00 0.00 0.00 2.57
213 214 9.460019 AAAATGAAAGGACAAAAAGGAATCAAA 57.540 25.926 0.00 0.00 0.00 2.69
214 215 9.460019 AAATGAAAGGACAAAAAGGAATCAAAA 57.540 25.926 0.00 0.00 0.00 2.44
215 216 7.841915 TGAAAGGACAAAAAGGAATCAAAAC 57.158 32.000 0.00 0.00 0.00 2.43
216 217 7.390027 TGAAAGGACAAAAAGGAATCAAAACA 58.610 30.769 0.00 0.00 0.00 2.83
217 218 7.548780 TGAAAGGACAAAAAGGAATCAAAACAG 59.451 33.333 0.00 0.00 0.00 3.16
218 219 6.790232 AGGACAAAAAGGAATCAAAACAGA 57.210 33.333 0.00 0.00 0.00 3.41
219 220 7.181569 AGGACAAAAAGGAATCAAAACAGAA 57.818 32.000 0.00 0.00 0.00 3.02
220 221 7.619965 AGGACAAAAAGGAATCAAAACAGAAA 58.380 30.769 0.00 0.00 0.00 2.52
221 222 8.100164 AGGACAAAAAGGAATCAAAACAGAAAA 58.900 29.630 0.00 0.00 0.00 2.29
222 223 8.726068 GGACAAAAAGGAATCAAAACAGAAAAA 58.274 29.630 0.00 0.00 0.00 1.94
250 251 7.793927 AAAAACCAGAACAAAACAACTGAAA 57.206 28.000 0.00 0.00 32.90 2.69
251 252 7.793927 AAAACCAGAACAAAACAACTGAAAA 57.206 28.000 0.00 0.00 32.90 2.29
252 253 6.779115 AACCAGAACAAAACAACTGAAAAC 57.221 33.333 0.00 0.00 32.90 2.43
253 254 6.096673 ACCAGAACAAAACAACTGAAAACT 57.903 33.333 0.00 0.00 32.90 2.66
254 255 5.925969 ACCAGAACAAAACAACTGAAAACTG 59.074 36.000 0.00 0.00 32.90 3.16
255 256 5.348451 CCAGAACAAAACAACTGAAAACTGG 59.652 40.000 0.00 0.00 35.02 4.00
256 257 4.929211 AGAACAAAACAACTGAAAACTGGC 59.071 37.500 0.00 0.00 0.00 4.85
257 258 3.595173 ACAAAACAACTGAAAACTGGCC 58.405 40.909 0.00 0.00 0.00 5.36
258 259 3.007398 ACAAAACAACTGAAAACTGGCCA 59.993 39.130 4.71 4.71 0.00 5.36
259 260 3.971245 AAACAACTGAAAACTGGCCAA 57.029 38.095 7.01 0.00 0.00 4.52
260 261 3.971245 AACAACTGAAAACTGGCCAAA 57.029 38.095 7.01 0.00 0.00 3.28
261 262 3.971245 ACAACTGAAAACTGGCCAAAA 57.029 38.095 7.01 0.00 0.00 2.44
262 263 3.595173 ACAACTGAAAACTGGCCAAAAC 58.405 40.909 7.01 0.00 0.00 2.43
263 264 2.935849 CAACTGAAAACTGGCCAAAACC 59.064 45.455 7.01 0.00 0.00 3.27
264 265 1.136110 ACTGAAAACTGGCCAAAACCG 59.864 47.619 7.01 0.00 0.00 4.44
265 266 1.136110 CTGAAAACTGGCCAAAACCGT 59.864 47.619 7.01 0.00 0.00 4.83
266 267 1.135333 TGAAAACTGGCCAAAACCGTC 59.865 47.619 7.01 0.09 0.00 4.79
267 268 1.135333 GAAAACTGGCCAAAACCGTCA 59.865 47.619 7.01 0.00 0.00 4.35
268 269 1.187087 AAACTGGCCAAAACCGTCAA 58.813 45.000 7.01 0.00 0.00 3.18
269 270 1.187087 AACTGGCCAAAACCGTCAAA 58.813 45.000 7.01 0.00 0.00 2.69
270 271 1.187087 ACTGGCCAAAACCGTCAAAA 58.813 45.000 7.01 0.00 0.00 2.44
271 272 1.550976 ACTGGCCAAAACCGTCAAAAA 59.449 42.857 7.01 0.00 0.00 1.94
290 291 3.971245 AAACTGGAAGCAACAAAACCA 57.029 38.095 0.00 0.00 37.60 3.67
291 292 4.486125 AAACTGGAAGCAACAAAACCAT 57.514 36.364 0.00 0.00 37.60 3.55
292 293 5.606348 AAACTGGAAGCAACAAAACCATA 57.394 34.783 0.00 0.00 37.60 2.74
293 294 4.853924 ACTGGAAGCAACAAAACCATAG 57.146 40.909 0.00 0.00 37.60 2.23
294 295 4.469657 ACTGGAAGCAACAAAACCATAGA 58.530 39.130 0.00 0.00 37.60 1.98
295 296 4.892934 ACTGGAAGCAACAAAACCATAGAA 59.107 37.500 0.00 0.00 37.60 2.10
296 297 5.010012 ACTGGAAGCAACAAAACCATAGAAG 59.990 40.000 0.00 0.00 37.60 2.85
297 298 5.136828 TGGAAGCAACAAAACCATAGAAGA 58.863 37.500 0.00 0.00 0.00 2.87
298 299 5.596361 TGGAAGCAACAAAACCATAGAAGAA 59.404 36.000 0.00 0.00 0.00 2.52
299 300 6.097554 TGGAAGCAACAAAACCATAGAAGAAA 59.902 34.615 0.00 0.00 0.00 2.52
300 301 6.983890 GGAAGCAACAAAACCATAGAAGAAAA 59.016 34.615 0.00 0.00 0.00 2.29
301 302 7.494298 GGAAGCAACAAAACCATAGAAGAAAAA 59.506 33.333 0.00 0.00 0.00 1.94
302 303 7.770801 AGCAACAAAACCATAGAAGAAAAAC 57.229 32.000 0.00 0.00 0.00 2.43
303 304 6.475402 AGCAACAAAACCATAGAAGAAAAACG 59.525 34.615 0.00 0.00 0.00 3.60
304 305 6.474102 GCAACAAAACCATAGAAGAAAAACGA 59.526 34.615 0.00 0.00 0.00 3.85
305 306 7.009723 GCAACAAAACCATAGAAGAAAAACGAA 59.990 33.333 0.00 0.00 0.00 3.85
306 307 8.865001 CAACAAAACCATAGAAGAAAAACGAAA 58.135 29.630 0.00 0.00 0.00 3.46
307 308 8.989653 ACAAAACCATAGAAGAAAAACGAAAA 57.010 26.923 0.00 0.00 0.00 2.29
308 309 9.425577 ACAAAACCATAGAAGAAAAACGAAAAA 57.574 25.926 0.00 0.00 0.00 1.94
325 326 2.595124 AAAACCCGCAAGAAACAAGG 57.405 45.000 0.00 0.00 43.02 3.61
326 327 1.770294 AAACCCGCAAGAAACAAGGA 58.230 45.000 0.00 0.00 43.02 3.36
327 328 1.770294 AACCCGCAAGAAACAAGGAA 58.230 45.000 0.00 0.00 43.02 3.36
328 329 1.770294 ACCCGCAAGAAACAAGGAAA 58.230 45.000 0.00 0.00 43.02 3.13
329 330 2.104170 ACCCGCAAGAAACAAGGAAAA 58.896 42.857 0.00 0.00 43.02 2.29
330 331 2.159156 ACCCGCAAGAAACAAGGAAAAC 60.159 45.455 0.00 0.00 43.02 2.43
331 332 2.159170 CCCGCAAGAAACAAGGAAAACA 60.159 45.455 0.00 0.00 43.02 2.83
332 333 3.115554 CCGCAAGAAACAAGGAAAACAG 58.884 45.455 0.00 0.00 43.02 3.16
333 334 2.535574 CGCAAGAAACAAGGAAAACAGC 59.464 45.455 0.00 0.00 43.02 4.40
334 335 3.520569 GCAAGAAACAAGGAAAACAGCA 58.479 40.909 0.00 0.00 0.00 4.41
335 336 3.553105 GCAAGAAACAAGGAAAACAGCAG 59.447 43.478 0.00 0.00 0.00 4.24
336 337 3.443099 AGAAACAAGGAAAACAGCAGC 57.557 42.857 0.00 0.00 0.00 5.25
337 338 2.119457 GAAACAAGGAAAACAGCAGCG 58.881 47.619 0.00 0.00 0.00 5.18
338 339 1.388547 AACAAGGAAAACAGCAGCGA 58.611 45.000 0.00 0.00 0.00 4.93
339 340 1.388547 ACAAGGAAAACAGCAGCGAA 58.611 45.000 0.00 0.00 0.00 4.70
340 341 1.065551 ACAAGGAAAACAGCAGCGAAC 59.934 47.619 0.00 0.00 0.00 3.95
341 342 0.307760 AAGGAAAACAGCAGCGAACG 59.692 50.000 0.00 0.00 0.00 3.95
342 343 0.531974 AGGAAAACAGCAGCGAACGA 60.532 50.000 0.00 0.00 0.00 3.85
343 344 0.306533 GGAAAACAGCAGCGAACGAA 59.693 50.000 0.00 0.00 0.00 3.85
344 345 1.268335 GGAAAACAGCAGCGAACGAAA 60.268 47.619 0.00 0.00 0.00 3.46
345 346 2.604614 GGAAAACAGCAGCGAACGAAAT 60.605 45.455 0.00 0.00 0.00 2.17
346 347 2.316119 AAACAGCAGCGAACGAAATC 57.684 45.000 0.00 0.00 0.00 2.17
347 348 0.517316 AACAGCAGCGAACGAAATCC 59.483 50.000 0.00 0.00 0.00 3.01
348 349 1.059369 CAGCAGCGAACGAAATCCG 59.941 57.895 0.00 0.00 45.44 4.18
357 358 4.120085 CGAAATCCGTACCTGGGC 57.880 61.111 0.00 0.00 0.00 5.36
358 359 1.523032 CGAAATCCGTACCTGGGCC 60.523 63.158 0.00 0.00 0.00 5.80
359 360 1.523032 GAAATCCGTACCTGGGCCG 60.523 63.158 0.00 0.00 0.00 6.13
360 361 2.935627 GAAATCCGTACCTGGGCCGG 62.936 65.000 17.23 17.23 43.03 6.13
381 382 4.876701 AAGTGGCGACTTGCTTCA 57.123 50.000 13.79 0.00 41.12 3.02
382 383 2.621763 AAGTGGCGACTTGCTTCAG 58.378 52.632 13.79 0.00 41.12 3.02
383 384 1.510480 AAGTGGCGACTTGCTTCAGC 61.510 55.000 13.79 0.00 41.12 4.26
384 385 3.043713 TGGCGACTTGCTTCAGCG 61.044 61.111 0.00 0.00 45.83 5.18
385 386 2.738521 GGCGACTTGCTTCAGCGA 60.739 61.111 0.00 0.00 45.83 4.93
386 387 2.317609 GGCGACTTGCTTCAGCGAA 61.318 57.895 0.00 0.00 45.83 4.70
387 388 1.131420 GCGACTTGCTTCAGCGAAG 59.869 57.895 12.17 12.17 45.83 3.79
388 389 1.784062 CGACTTGCTTCAGCGAAGG 59.216 57.895 16.39 6.16 45.83 3.46
389 390 1.499502 GACTTGCTTCAGCGAAGGC 59.500 57.895 16.39 10.87 45.83 4.35
404 405 1.003233 AGGCTCCTCCTTTTGACGC 60.003 57.895 0.00 0.00 44.75 5.19
405 406 2.041115 GGCTCCTCCTTTTGACGCC 61.041 63.158 0.00 0.00 0.00 5.68
406 407 1.003233 GCTCCTCCTTTTGACGCCT 60.003 57.895 0.00 0.00 0.00 5.52
407 408 1.301677 GCTCCTCCTTTTGACGCCTG 61.302 60.000 0.00 0.00 0.00 4.85
408 409 1.301677 CTCCTCCTTTTGACGCCTGC 61.302 60.000 0.00 0.00 0.00 4.85
409 410 2.680913 CCTCCTTTTGACGCCTGCG 61.681 63.158 10.40 10.40 46.03 5.18
410 411 2.668212 TCCTTTTGACGCCTGCGG 60.668 61.111 16.63 0.00 44.69 5.69
411 412 3.737172 CCTTTTGACGCCTGCGGG 61.737 66.667 16.63 7.41 44.69 6.13
421 422 3.409856 CCTGCGGGCGTCAAATAG 58.590 61.111 0.00 0.00 0.00 1.73
422 423 2.180204 CCTGCGGGCGTCAAATAGG 61.180 63.158 0.00 0.00 0.00 2.57
423 424 1.153449 CTGCGGGCGTCAAATAGGA 60.153 57.895 0.00 0.00 0.00 2.94
424 425 0.532862 CTGCGGGCGTCAAATAGGAT 60.533 55.000 0.00 0.00 0.00 3.24
425 426 0.107410 TGCGGGCGTCAAATAGGATT 60.107 50.000 0.00 0.00 0.00 3.01
426 427 1.021968 GCGGGCGTCAAATAGGATTT 58.978 50.000 0.00 0.00 0.00 2.17
427 428 1.268539 GCGGGCGTCAAATAGGATTTG 60.269 52.381 5.71 5.71 0.00 2.32
428 429 1.268539 CGGGCGTCAAATAGGATTTGC 60.269 52.381 6.99 2.84 0.00 3.68
429 430 1.067060 GGGCGTCAAATAGGATTTGCC 59.933 52.381 6.99 5.44 40.48 4.52
430 431 1.067060 GGCGTCAAATAGGATTTGCCC 59.933 52.381 6.99 4.45 37.37 5.36
431 432 1.067060 GCGTCAAATAGGATTTGCCCC 59.933 52.381 6.99 0.00 37.37 5.80
432 433 1.333619 CGTCAAATAGGATTTGCCCCG 59.666 52.381 6.99 5.85 37.37 5.73
433 434 2.375146 GTCAAATAGGATTTGCCCCGT 58.625 47.619 6.99 0.00 37.37 5.28
434 435 2.758423 GTCAAATAGGATTTGCCCCGTT 59.242 45.455 6.99 0.00 37.37 4.44
435 436 3.194755 GTCAAATAGGATTTGCCCCGTTT 59.805 43.478 6.99 0.00 37.37 3.60
436 437 4.399934 GTCAAATAGGATTTGCCCCGTTTA 59.600 41.667 6.99 0.00 37.37 2.01
437 438 4.642885 TCAAATAGGATTTGCCCCGTTTAG 59.357 41.667 6.99 0.00 37.37 1.85
438 439 2.721425 TAGGATTTGCCCCGTTTAGG 57.279 50.000 0.00 0.00 37.37 2.69
439 440 0.996583 AGGATTTGCCCCGTTTAGGA 59.003 50.000 0.00 0.00 45.00 2.94
440 441 1.569072 AGGATTTGCCCCGTTTAGGAT 59.431 47.619 0.00 0.00 45.00 3.24
441 442 1.954382 GGATTTGCCCCGTTTAGGATC 59.046 52.381 0.00 0.00 45.00 3.36
442 443 2.422945 GGATTTGCCCCGTTTAGGATCT 60.423 50.000 0.00 0.00 45.00 2.75
443 444 2.122783 TTTGCCCCGTTTAGGATCTG 57.877 50.000 0.00 0.00 45.00 2.90
444 445 0.393808 TTGCCCCGTTTAGGATCTGC 60.394 55.000 0.00 0.00 45.00 4.26
445 446 1.526225 GCCCCGTTTAGGATCTGCC 60.526 63.158 0.00 0.00 45.00 4.85
454 455 3.474570 GGATCTGCCTGCTCCCGT 61.475 66.667 0.00 0.00 0.00 5.28
455 456 2.134287 GGATCTGCCTGCTCCCGTA 61.134 63.158 0.00 0.00 0.00 4.02
456 457 1.686325 GGATCTGCCTGCTCCCGTAA 61.686 60.000 0.00 0.00 0.00 3.18
457 458 0.249657 GATCTGCCTGCTCCCGTAAG 60.250 60.000 0.00 0.00 0.00 2.34
458 459 0.978146 ATCTGCCTGCTCCCGTAAGT 60.978 55.000 0.00 0.00 0.00 2.24
459 460 1.192146 TCTGCCTGCTCCCGTAAGTT 61.192 55.000 0.00 0.00 0.00 2.66
460 461 0.321653 CTGCCTGCTCCCGTAAGTTT 60.322 55.000 0.00 0.00 0.00 2.66
461 462 0.321298 TGCCTGCTCCCGTAAGTTTC 60.321 55.000 0.00 0.00 0.00 2.78
479 480 9.505995 GTAAGTTTCAGTTACCGAAAATTTGAA 57.494 29.630 11.12 0.00 40.15 2.69
545 552 2.125229 CTGCTGTGCGATGCCTCT 60.125 61.111 0.00 0.00 0.00 3.69
720 740 1.726533 CTAACCCTCCTCGTCCGCTC 61.727 65.000 0.00 0.00 0.00 5.03
744 764 0.966370 CTCCTCGTCCGTTCCTTCCT 60.966 60.000 0.00 0.00 0.00 3.36
745 765 0.541296 TCCTCGTCCGTTCCTTCCTT 60.541 55.000 0.00 0.00 0.00 3.36
746 766 0.108756 CCTCGTCCGTTCCTTCCTTC 60.109 60.000 0.00 0.00 0.00 3.46
747 767 0.108756 CTCGTCCGTTCCTTCCTTCC 60.109 60.000 0.00 0.00 0.00 3.46
813 833 2.126307 CAGGACGACAGGACTGCG 60.126 66.667 12.28 12.28 36.62 5.18
816 836 2.126424 GACGACAGGACTGCGGAC 60.126 66.667 16.24 0.00 35.52 4.79
924 948 3.502211 GCAGAAAGAATCCGGTTTTCAGA 59.498 43.478 17.94 0.00 34.18 3.27
971 999 1.536418 CACCAGTCCTCCTGTCCCA 60.536 63.158 0.00 0.00 39.74 4.37
1056 1096 2.442272 ACATCCCTCTCCCGTCGG 60.442 66.667 3.60 3.60 0.00 4.79
1189 1235 2.027073 GACCATGACGAAGCACGCA 61.027 57.895 0.00 3.75 46.94 5.24
1190 1236 1.361668 GACCATGACGAAGCACGCAT 61.362 55.000 0.00 5.62 46.94 4.73
1212 1273 0.676782 GTGCGCAAGGAGGTAATGGT 60.677 55.000 14.00 0.00 39.66 3.55
1267 1332 8.601845 TTGGAATAGTCACATTGGATATTACG 57.398 34.615 0.00 0.00 0.00 3.18
1309 1374 2.102588 GCTTATTCCTTCTACCAGCGGA 59.897 50.000 1.50 0.00 0.00 5.54
1331 1402 7.220108 GCGGATTCAATGTAAAATAGGTTGTTC 59.780 37.037 0.00 0.00 0.00 3.18
1389 1460 3.974642 ACTTTGTTCTCCTTCCTACCTGT 59.025 43.478 0.00 0.00 0.00 4.00
1447 1555 7.404671 AACCACTTGTTGAGTTGACTAAATT 57.595 32.000 0.00 0.00 36.10 1.82
1448 1556 7.027778 ACCACTTGTTGAGTTGACTAAATTC 57.972 36.000 0.00 0.00 36.10 2.17
1449 1557 6.039382 ACCACTTGTTGAGTTGACTAAATTCC 59.961 38.462 0.00 0.00 36.10 3.01
1450 1558 6.263168 CCACTTGTTGAGTTGACTAAATTCCT 59.737 38.462 0.00 0.00 36.10 3.36
1451 1559 7.444183 CCACTTGTTGAGTTGACTAAATTCCTA 59.556 37.037 0.00 0.00 36.10 2.94
1490 1598 6.297582 TGGTTGTTTAGTTCTATCCGGAAAA 58.702 36.000 9.01 0.00 0.00 2.29
1491 1599 6.428771 TGGTTGTTTAGTTCTATCCGGAAAAG 59.571 38.462 9.01 9.80 0.00 2.27
1831 2039 9.387257 CAGGCAGTGCTGATTTATCATATATAA 57.613 33.333 16.11 0.00 36.02 0.98
1887 2095 9.907229 AGTAGCCTTCTTATTAGCAAGTTAATT 57.093 29.630 0.00 0.00 0.00 1.40
1897 2105 7.809546 ATTAGCAAGTTAATTTCTCCTAGCC 57.190 36.000 0.00 0.00 0.00 3.93
1918 2127 2.031682 CGCATGCTTTTATAGGCTGACC 60.032 50.000 17.13 0.00 0.00 4.02
1942 2151 1.965643 TGTGCGAGGGTTAGTGTTAGT 59.034 47.619 0.00 0.00 0.00 2.24
1943 2152 3.156293 TGTGCGAGGGTTAGTGTTAGTA 58.844 45.455 0.00 0.00 0.00 1.82
1944 2153 3.765511 TGTGCGAGGGTTAGTGTTAGTAT 59.234 43.478 0.00 0.00 0.00 2.12
1945 2154 4.221262 TGTGCGAGGGTTAGTGTTAGTATT 59.779 41.667 0.00 0.00 0.00 1.89
1946 2155 5.173664 GTGCGAGGGTTAGTGTTAGTATTT 58.826 41.667 0.00 0.00 0.00 1.40
1947 2156 6.071447 TGTGCGAGGGTTAGTGTTAGTATTTA 60.071 38.462 0.00 0.00 0.00 1.40
1948 2157 6.813152 GTGCGAGGGTTAGTGTTAGTATTTAA 59.187 38.462 0.00 0.00 0.00 1.52
1949 2158 6.813152 TGCGAGGGTTAGTGTTAGTATTTAAC 59.187 38.462 0.00 0.00 0.00 2.01
2012 2221 6.055588 TCCAGCTTAGATTTACCAATGCTAC 58.944 40.000 0.00 0.00 0.00 3.58
2243 2457 5.104151 TCCAGGCATGATTTACCATAGTCAA 60.104 40.000 0.00 0.00 0.00 3.18
2244 2458 5.771666 CCAGGCATGATTTACCATAGTCAAT 59.228 40.000 0.00 0.00 0.00 2.57
2245 2459 6.942005 CCAGGCATGATTTACCATAGTCAATA 59.058 38.462 0.00 0.00 0.00 1.90
2246 2460 7.448161 CCAGGCATGATTTACCATAGTCAATAA 59.552 37.037 0.00 0.00 0.00 1.40
2247 2461 8.849168 CAGGCATGATTTACCATAGTCAATAAA 58.151 33.333 0.00 0.00 0.00 1.40
2248 2462 9.071276 AGGCATGATTTACCATAGTCAATAAAG 57.929 33.333 0.00 0.00 0.00 1.85
2249 2463 9.066892 GGCATGATTTACCATAGTCAATAAAGA 57.933 33.333 0.00 0.00 0.00 2.52
2250 2464 9.884465 GCATGATTTACCATAGTCAATAAAGAC 57.116 33.333 0.00 0.00 38.81 3.01
2349 2576 6.771188 ATAGTTGATATAGTTCGCAAGTGC 57.229 37.500 0.00 0.00 39.48 4.40
2382 2609 3.150767 GTGTAAAAGGTGCATGTGGGTA 58.849 45.455 0.00 0.00 0.00 3.69
2550 2787 7.009179 TGGCTAGTCATTTAGAGGATATTGG 57.991 40.000 0.00 0.00 0.00 3.16
2785 3041 8.725148 AGAACAATCTTGTCTTACATTGTCATC 58.275 33.333 0.00 0.00 41.31 2.92
2991 3247 2.464157 ACTTAGAGACTGGTTGCAGC 57.536 50.000 0.00 0.00 0.00 5.25
3064 3320 1.961394 ACGGAAGTAGTGTCTGCTTGA 59.039 47.619 4.98 0.00 46.88 3.02
3288 3544 3.885297 GGATGCTAGCATGGAAAGCTTTA 59.115 43.478 34.16 0.00 43.25 1.85
3435 3692 7.885009 ATTGGATATCACATTGTCATTGTCA 57.115 32.000 4.83 0.00 0.00 3.58
3494 3751 1.769026 TCCCCTCTCGATGAAGTCTG 58.231 55.000 0.00 0.00 0.00 3.51
3614 3871 3.081804 CACCATGGAAAGGTTAGGACAC 58.918 50.000 21.47 0.00 37.23 3.67
3665 3923 5.394115 CCAACTAAGTGGCCCACAAATTATC 60.394 44.000 17.80 0.00 36.74 1.75
3769 4036 6.959639 ACACATACAACTTGTTTCTGGATT 57.040 33.333 0.00 0.00 0.00 3.01
3792 4059 2.027745 TCCTGCTCCTTGTGAACTCATC 60.028 50.000 0.00 0.00 0.00 2.92
3799 4066 2.816087 CCTTGTGAACTCATCCTGTTGG 59.184 50.000 0.00 0.00 0.00 3.77
3807 4074 3.403038 ACTCATCCTGTTGGAAAGTTCG 58.597 45.455 0.00 0.00 46.80 3.95
3823 4090 2.094182 AGTTCGGCGATGCTTCTTTAGA 60.094 45.455 11.76 0.00 0.00 2.10
3842 4109 6.757897 TTAGAGGTTTTCATAACTGGCATG 57.242 37.500 0.00 0.00 0.00 4.06
4039 4306 1.901833 GTGAGTGCATTTGGGGGAATT 59.098 47.619 0.00 0.00 0.00 2.17
4128 4398 3.933955 ACGTTTGTGTAGTTGTGTTGCTA 59.066 39.130 0.00 0.00 0.00 3.49
4143 4413 3.244875 TGTTGCTACCCATGACATGTTCT 60.245 43.478 14.26 0.00 0.00 3.01
4148 4418 2.596346 ACCCATGACATGTTCTTGCAA 58.404 42.857 14.26 0.00 0.00 4.08
4156 4426 3.151554 ACATGTTCTTGCAAGCTCATCA 58.848 40.909 21.99 14.53 0.00 3.07
4157 4427 3.762288 ACATGTTCTTGCAAGCTCATCAT 59.238 39.130 21.99 15.92 0.00 2.45
4158 4428 3.842732 TGTTCTTGCAAGCTCATCATG 57.157 42.857 21.99 0.00 0.00 3.07
4159 4429 2.094906 TGTTCTTGCAAGCTCATCATGC 60.095 45.455 21.99 0.21 39.66 4.06
4162 4432 2.949826 TGCAAGCTCATCATGCACA 58.050 47.368 5.92 0.00 43.54 4.57
4179 4449 4.176271 TGCACATCTCAATTAGTCGTGAG 58.824 43.478 0.00 0.00 42.23 3.51
4182 4452 5.805486 GCACATCTCAATTAGTCGTGAGTTA 59.195 40.000 0.00 0.00 41.69 2.24
4461 4740 2.240667 CCCCAGAAGACATCACCTTCAT 59.759 50.000 0.00 0.00 41.73 2.57
4573 4852 4.901197 TGTGATTGCCAAGGTTAGTCTA 57.099 40.909 0.00 0.00 0.00 2.59
4600 4879 2.291741 CTCAGTGTGCCAAGGAAAAGAC 59.708 50.000 0.00 0.00 0.00 3.01
4636 4916 1.135546 CAGTTTGCAACACAACCGTCA 60.136 47.619 0.00 0.00 38.23 4.35
4640 4920 0.881796 TGCAACACAACCGTCACAAA 59.118 45.000 0.00 0.00 0.00 2.83
4645 4925 2.936316 ACACAACCGTCACAAACAAAC 58.064 42.857 0.00 0.00 0.00 2.93
4679 4959 3.372206 CCTGCTGCTGTCAGTATTTGTAC 59.628 47.826 0.00 0.00 42.29 2.90
4730 5464 4.918810 AGTTTGGTTCAGTGAATTGACC 57.081 40.909 9.18 6.81 0.00 4.02
4733 5467 2.862541 TGGTTCAGTGAATTGACCTGG 58.137 47.619 9.18 0.00 0.00 4.45
4932 5675 5.661056 TTCGACCAAGTGAGATCTTACAT 57.339 39.130 18.83 4.98 0.00 2.29
5075 5818 1.497991 GACTGCTGCAACAAGTACGA 58.502 50.000 3.02 0.00 0.00 3.43
5226 5973 0.954452 GCAGGTGGTTTTGAGTCCAG 59.046 55.000 0.00 0.00 34.16 3.86
5255 6002 3.753294 AATAGTATTGACAGGGGCGAG 57.247 47.619 0.00 0.00 0.00 5.03
5305 6077 2.185350 CCAGCAGCGAGTGGGTAG 59.815 66.667 0.00 0.00 0.00 3.18
5335 6119 0.675633 CAGAAAACCAGGGCCAACTG 59.324 55.000 6.18 3.06 38.21 3.16
5353 6137 2.098117 ACTGAGCAGAAACTGTGTTTGC 59.902 45.455 5.39 5.39 33.43 3.68
5507 7373 3.201266 TGTGGATGGGTAAAGGGTATCAC 59.799 47.826 0.00 0.00 0.00 3.06
5521 7390 1.938577 GTATCACATGCTGCCTGAGTG 59.061 52.381 11.93 8.01 0.00 3.51
5522 7391 0.327259 ATCACATGCTGCCTGAGTGT 59.673 50.000 11.93 0.00 0.00 3.55
5523 7392 0.975887 TCACATGCTGCCTGAGTGTA 59.024 50.000 11.93 0.00 0.00 2.90
5524 7393 1.066645 TCACATGCTGCCTGAGTGTAG 60.067 52.381 11.93 0.00 0.00 2.74
5540 7409 2.097825 TGTAGGTAGCTTCCGGAGAAC 58.902 52.381 3.34 1.48 0.00 3.01
5651 7542 6.751157 AGCAGAATGAGATCTCAATCTACTG 58.249 40.000 32.94 28.65 45.27 2.74
5682 7573 1.955778 TGCAACTGAACAATGTCCTGG 59.044 47.619 0.00 0.00 0.00 4.45
5761 7929 3.083349 CCCCTGCCACCTGATCGA 61.083 66.667 0.00 0.00 0.00 3.59
5841 8402 4.100084 CGCCCCTGTCCATCTGCA 62.100 66.667 0.00 0.00 0.00 4.41
5843 8404 1.304381 GCCCCTGTCCATCTGCAAA 60.304 57.895 0.00 0.00 0.00 3.68
5999 9079 2.287251 CGGGAGGGAAGGGGAGAT 59.713 66.667 0.00 0.00 0.00 2.75
6038 9120 3.119779 GGTCGAGAGTGAGGTTTGACTAG 60.120 52.174 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.023128 GCACTGTAGAATTGTTCATTGTGTATT 58.977 33.333 2.58 0.00 0.00 1.89
17 18 7.174772 TGCACTGTAGAATTGTTCATTGTGTAT 59.825 33.333 2.58 0.00 0.00 2.29
18 19 6.484977 TGCACTGTAGAATTGTTCATTGTGTA 59.515 34.615 2.58 0.00 0.00 2.90
19 20 5.299028 TGCACTGTAGAATTGTTCATTGTGT 59.701 36.000 2.58 0.00 0.00 3.72
20 21 5.761003 TGCACTGTAGAATTGTTCATTGTG 58.239 37.500 2.58 1.07 0.00 3.33
21 22 6.389830 TTGCACTGTAGAATTGTTCATTGT 57.610 33.333 0.00 0.00 0.00 2.71
22 23 5.860182 CCTTGCACTGTAGAATTGTTCATTG 59.140 40.000 0.00 0.00 0.00 2.82
23 24 5.536161 ACCTTGCACTGTAGAATTGTTCATT 59.464 36.000 0.00 0.00 0.00 2.57
24 25 5.048504 CACCTTGCACTGTAGAATTGTTCAT 60.049 40.000 0.00 0.00 0.00 2.57
25 26 4.275689 CACCTTGCACTGTAGAATTGTTCA 59.724 41.667 0.00 0.00 0.00 3.18
26 27 4.515191 TCACCTTGCACTGTAGAATTGTTC 59.485 41.667 0.00 0.00 0.00 3.18
27 28 4.460263 TCACCTTGCACTGTAGAATTGTT 58.540 39.130 0.00 0.00 0.00 2.83
28 29 4.085357 TCACCTTGCACTGTAGAATTGT 57.915 40.909 0.00 0.00 0.00 2.71
29 30 4.516698 AGTTCACCTTGCACTGTAGAATTG 59.483 41.667 0.00 0.00 0.00 2.32
30 31 4.718961 AGTTCACCTTGCACTGTAGAATT 58.281 39.130 0.00 0.00 0.00 2.17
31 32 4.357918 AGTTCACCTTGCACTGTAGAAT 57.642 40.909 0.00 0.00 0.00 2.40
32 33 3.838244 AGTTCACCTTGCACTGTAGAA 57.162 42.857 0.00 0.00 0.00 2.10
33 34 4.283467 ACATAGTTCACCTTGCACTGTAGA 59.717 41.667 0.00 0.00 0.00 2.59
34 35 4.569943 ACATAGTTCACCTTGCACTGTAG 58.430 43.478 0.00 0.00 0.00 2.74
35 36 4.039852 TGACATAGTTCACCTTGCACTGTA 59.960 41.667 0.00 0.00 0.00 2.74
36 37 3.181455 TGACATAGTTCACCTTGCACTGT 60.181 43.478 0.00 0.00 0.00 3.55
37 38 3.402110 TGACATAGTTCACCTTGCACTG 58.598 45.455 0.00 0.00 0.00 3.66
38 39 3.769739 TGACATAGTTCACCTTGCACT 57.230 42.857 0.00 0.00 0.00 4.40
39 40 6.683974 ATTATGACATAGTTCACCTTGCAC 57.316 37.500 0.00 0.00 0.00 4.57
83 84 9.393249 CGTGTGTTACAAAAATCTTCAATGTAT 57.607 29.630 0.00 0.00 0.00 2.29
84 85 7.858382 CCGTGTGTTACAAAAATCTTCAATGTA 59.142 33.333 0.00 0.00 0.00 2.29
85 86 6.695278 CCGTGTGTTACAAAAATCTTCAATGT 59.305 34.615 0.00 0.00 0.00 2.71
86 87 6.695278 ACCGTGTGTTACAAAAATCTTCAATG 59.305 34.615 0.00 0.00 0.00 2.82
87 88 6.695278 CACCGTGTGTTACAAAAATCTTCAAT 59.305 34.615 0.00 0.00 0.00 2.57
88 89 6.030849 CACCGTGTGTTACAAAAATCTTCAA 58.969 36.000 0.00 0.00 0.00 2.69
89 90 5.354513 TCACCGTGTGTTACAAAAATCTTCA 59.645 36.000 0.00 0.00 34.79 3.02
90 91 5.812652 TCACCGTGTGTTACAAAAATCTTC 58.187 37.500 0.00 0.00 34.79 2.87
91 92 5.821516 TCACCGTGTGTTACAAAAATCTT 57.178 34.783 0.00 0.00 34.79 2.40
92 93 5.355910 AGTTCACCGTGTGTTACAAAAATCT 59.644 36.000 0.00 0.00 34.79 2.40
93 94 5.575019 AGTTCACCGTGTGTTACAAAAATC 58.425 37.500 0.00 0.00 34.79 2.17
94 95 5.570234 AGTTCACCGTGTGTTACAAAAAT 57.430 34.783 0.00 0.00 34.79 1.82
95 96 5.373981 AAGTTCACCGTGTGTTACAAAAA 57.626 34.783 0.00 0.00 34.79 1.94
96 97 5.373981 AAAGTTCACCGTGTGTTACAAAA 57.626 34.783 0.00 0.00 34.79 2.44
97 98 5.373981 AAAAGTTCACCGTGTGTTACAAA 57.626 34.783 0.00 0.00 34.79 2.83
98 99 5.373981 AAAAAGTTCACCGTGTGTTACAA 57.626 34.783 0.00 0.00 34.79 2.41
99 100 6.680874 ATAAAAAGTTCACCGTGTGTTACA 57.319 33.333 0.00 0.00 34.79 2.41
100 101 7.629130 TGTATAAAAAGTTCACCGTGTGTTAC 58.371 34.615 0.00 4.69 34.79 2.50
101 102 7.783090 TGTATAAAAAGTTCACCGTGTGTTA 57.217 32.000 0.00 0.00 34.79 2.41
102 103 6.680874 TGTATAAAAAGTTCACCGTGTGTT 57.319 33.333 0.00 0.00 34.79 3.32
103 104 6.680874 TTGTATAAAAAGTTCACCGTGTGT 57.319 33.333 0.00 0.00 34.79 3.72
104 105 9.109533 GTATTTGTATAAAAAGTTCACCGTGTG 57.890 33.333 0.00 0.00 34.45 3.82
105 106 8.838365 TGTATTTGTATAAAAAGTTCACCGTGT 58.162 29.630 0.00 0.00 0.00 4.49
106 107 9.109533 GTGTATTTGTATAAAAAGTTCACCGTG 57.890 33.333 0.00 0.00 0.00 4.94
107 108 8.838365 TGTGTATTTGTATAAAAAGTTCACCGT 58.162 29.630 13.15 0.00 0.00 4.83
108 109 9.666626 TTGTGTATTTGTATAAAAAGTTCACCG 57.333 29.630 13.15 0.00 0.00 4.94
128 129 9.996554 TTCTGTTCTTCTTCTCATTATTGTGTA 57.003 29.630 0.00 0.00 0.00 2.90
129 130 8.908786 TTCTGTTCTTCTTCTCATTATTGTGT 57.091 30.769 0.00 0.00 0.00 3.72
130 131 9.604626 GTTTCTGTTCTTCTTCTCATTATTGTG 57.395 33.333 0.00 0.00 0.00 3.33
131 132 9.342308 TGTTTCTGTTCTTCTTCTCATTATTGT 57.658 29.630 0.00 0.00 0.00 2.71
132 133 9.823098 CTGTTTCTGTTCTTCTTCTCATTATTG 57.177 33.333 0.00 0.00 0.00 1.90
133 134 9.007901 CCTGTTTCTGTTCTTCTTCTCATTATT 57.992 33.333 0.00 0.00 0.00 1.40
134 135 8.378565 TCCTGTTTCTGTTCTTCTTCTCATTAT 58.621 33.333 0.00 0.00 0.00 1.28
135 136 7.735917 TCCTGTTTCTGTTCTTCTTCTCATTA 58.264 34.615 0.00 0.00 0.00 1.90
136 137 6.595682 TCCTGTTTCTGTTCTTCTTCTCATT 58.404 36.000 0.00 0.00 0.00 2.57
137 138 6.179906 TCCTGTTTCTGTTCTTCTTCTCAT 57.820 37.500 0.00 0.00 0.00 2.90
138 139 5.614324 TCCTGTTTCTGTTCTTCTTCTCA 57.386 39.130 0.00 0.00 0.00 3.27
139 140 6.927294 TTTCCTGTTTCTGTTCTTCTTCTC 57.073 37.500 0.00 0.00 0.00 2.87
140 141 8.980481 TTATTTCCTGTTTCTGTTCTTCTTCT 57.020 30.769 0.00 0.00 0.00 2.85
167 168 9.810545 TCATTTTCTTTCATTTACGTTTCCTTT 57.189 25.926 0.00 0.00 0.00 3.11
168 169 9.810545 TTCATTTTCTTTCATTTACGTTTCCTT 57.189 25.926 0.00 0.00 0.00 3.36
169 170 9.810545 TTTCATTTTCTTTCATTTACGTTTCCT 57.189 25.926 0.00 0.00 0.00 3.36
172 173 9.810545 TCCTTTCATTTTCTTTCATTTACGTTT 57.189 25.926 0.00 0.00 0.00 3.60
173 174 9.244799 GTCCTTTCATTTTCTTTCATTTACGTT 57.755 29.630 0.00 0.00 0.00 3.99
174 175 8.410141 TGTCCTTTCATTTTCTTTCATTTACGT 58.590 29.630 0.00 0.00 0.00 3.57
175 176 8.795786 TGTCCTTTCATTTTCTTTCATTTACG 57.204 30.769 0.00 0.00 0.00 3.18
180 181 9.112725 CCTTTTTGTCCTTTCATTTTCTTTCAT 57.887 29.630 0.00 0.00 0.00 2.57
181 182 8.317679 TCCTTTTTGTCCTTTCATTTTCTTTCA 58.682 29.630 0.00 0.00 0.00 2.69
182 183 8.716646 TCCTTTTTGTCCTTTCATTTTCTTTC 57.283 30.769 0.00 0.00 0.00 2.62
183 184 9.685276 ATTCCTTTTTGTCCTTTCATTTTCTTT 57.315 25.926 0.00 0.00 0.00 2.52
184 185 9.330063 GATTCCTTTTTGTCCTTTCATTTTCTT 57.670 29.630 0.00 0.00 0.00 2.52
185 186 8.485392 TGATTCCTTTTTGTCCTTTCATTTTCT 58.515 29.630 0.00 0.00 0.00 2.52
186 187 8.661352 TGATTCCTTTTTGTCCTTTCATTTTC 57.339 30.769 0.00 0.00 0.00 2.29
187 188 9.460019 TTTGATTCCTTTTTGTCCTTTCATTTT 57.540 25.926 0.00 0.00 0.00 1.82
188 189 9.460019 TTTTGATTCCTTTTTGTCCTTTCATTT 57.540 25.926 0.00 0.00 0.00 2.32
189 190 8.892723 GTTTTGATTCCTTTTTGTCCTTTCATT 58.107 29.630 0.00 0.00 0.00 2.57
190 191 8.046107 TGTTTTGATTCCTTTTTGTCCTTTCAT 58.954 29.630 0.00 0.00 0.00 2.57
191 192 7.390027 TGTTTTGATTCCTTTTTGTCCTTTCA 58.610 30.769 0.00 0.00 0.00 2.69
192 193 7.763985 TCTGTTTTGATTCCTTTTTGTCCTTTC 59.236 33.333 0.00 0.00 0.00 2.62
193 194 7.619965 TCTGTTTTGATTCCTTTTTGTCCTTT 58.380 30.769 0.00 0.00 0.00 3.11
194 195 7.181569 TCTGTTTTGATTCCTTTTTGTCCTT 57.818 32.000 0.00 0.00 0.00 3.36
195 196 6.790232 TCTGTTTTGATTCCTTTTTGTCCT 57.210 33.333 0.00 0.00 0.00 3.85
196 197 7.841915 TTTCTGTTTTGATTCCTTTTTGTCC 57.158 32.000 0.00 0.00 0.00 4.02
226 227 7.793927 TTTCAGTTGTTTTGTTCTGGTTTTT 57.206 28.000 0.00 0.00 0.00 1.94
227 228 7.497579 AGTTTTCAGTTGTTTTGTTCTGGTTTT 59.502 29.630 0.00 0.00 0.00 2.43
228 229 6.989759 AGTTTTCAGTTGTTTTGTTCTGGTTT 59.010 30.769 0.00 0.00 0.00 3.27
229 230 6.423604 CAGTTTTCAGTTGTTTTGTTCTGGTT 59.576 34.615 0.00 0.00 0.00 3.67
230 231 5.925969 CAGTTTTCAGTTGTTTTGTTCTGGT 59.074 36.000 0.00 0.00 0.00 4.00
231 232 5.348451 CCAGTTTTCAGTTGTTTTGTTCTGG 59.652 40.000 0.00 0.00 33.10 3.86
232 233 5.163963 GCCAGTTTTCAGTTGTTTTGTTCTG 60.164 40.000 0.00 0.00 0.00 3.02
233 234 4.929211 GCCAGTTTTCAGTTGTTTTGTTCT 59.071 37.500 0.00 0.00 0.00 3.01
234 235 4.092821 GGCCAGTTTTCAGTTGTTTTGTTC 59.907 41.667 0.00 0.00 0.00 3.18
235 236 4.000325 GGCCAGTTTTCAGTTGTTTTGTT 59.000 39.130 0.00 0.00 0.00 2.83
236 237 3.007398 TGGCCAGTTTTCAGTTGTTTTGT 59.993 39.130 0.00 0.00 0.00 2.83
237 238 3.594134 TGGCCAGTTTTCAGTTGTTTTG 58.406 40.909 0.00 0.00 0.00 2.44
238 239 3.971245 TGGCCAGTTTTCAGTTGTTTT 57.029 38.095 0.00 0.00 0.00 2.43
239 240 3.971245 TTGGCCAGTTTTCAGTTGTTT 57.029 38.095 5.11 0.00 0.00 2.83
240 241 3.971245 TTTGGCCAGTTTTCAGTTGTT 57.029 38.095 5.11 0.00 0.00 2.83
241 242 3.595173 GTTTTGGCCAGTTTTCAGTTGT 58.405 40.909 5.11 0.00 0.00 3.32
242 243 2.935849 GGTTTTGGCCAGTTTTCAGTTG 59.064 45.455 5.11 0.00 0.00 3.16
243 244 2.418060 CGGTTTTGGCCAGTTTTCAGTT 60.418 45.455 5.11 0.00 0.00 3.16
244 245 1.136110 CGGTTTTGGCCAGTTTTCAGT 59.864 47.619 5.11 0.00 0.00 3.41
245 246 1.136110 ACGGTTTTGGCCAGTTTTCAG 59.864 47.619 5.11 0.00 0.00 3.02
246 247 1.135333 GACGGTTTTGGCCAGTTTTCA 59.865 47.619 5.11 0.00 0.00 2.69
247 248 1.135333 TGACGGTTTTGGCCAGTTTTC 59.865 47.619 5.11 0.00 0.00 2.29
248 249 1.187087 TGACGGTTTTGGCCAGTTTT 58.813 45.000 5.11 0.00 0.00 2.43
249 250 1.187087 TTGACGGTTTTGGCCAGTTT 58.813 45.000 5.11 0.00 0.00 2.66
250 251 1.187087 TTTGACGGTTTTGGCCAGTT 58.813 45.000 5.11 0.00 0.00 3.16
251 252 1.187087 TTTTGACGGTTTTGGCCAGT 58.813 45.000 5.11 0.00 0.00 4.00
252 253 2.301577 TTTTTGACGGTTTTGGCCAG 57.698 45.000 5.11 0.00 0.00 4.85
268 269 4.646572 TGGTTTTGTTGCTTCCAGTTTTT 58.353 34.783 0.00 0.00 0.00 1.94
269 270 4.278975 TGGTTTTGTTGCTTCCAGTTTT 57.721 36.364 0.00 0.00 0.00 2.43
270 271 3.971245 TGGTTTTGTTGCTTCCAGTTT 57.029 38.095 0.00 0.00 0.00 2.66
271 272 4.892934 TCTATGGTTTTGTTGCTTCCAGTT 59.107 37.500 0.00 0.00 0.00 3.16
272 273 4.469657 TCTATGGTTTTGTTGCTTCCAGT 58.530 39.130 0.00 0.00 0.00 4.00
273 274 5.241506 TCTTCTATGGTTTTGTTGCTTCCAG 59.758 40.000 0.00 0.00 0.00 3.86
274 275 5.136828 TCTTCTATGGTTTTGTTGCTTCCA 58.863 37.500 0.00 0.00 0.00 3.53
275 276 5.705609 TCTTCTATGGTTTTGTTGCTTCC 57.294 39.130 0.00 0.00 0.00 3.46
276 277 8.328146 GTTTTTCTTCTATGGTTTTGTTGCTTC 58.672 33.333 0.00 0.00 0.00 3.86
277 278 7.010091 CGTTTTTCTTCTATGGTTTTGTTGCTT 59.990 33.333 0.00 0.00 0.00 3.91
278 279 6.475402 CGTTTTTCTTCTATGGTTTTGTTGCT 59.525 34.615 0.00 0.00 0.00 3.91
279 280 6.474102 TCGTTTTTCTTCTATGGTTTTGTTGC 59.526 34.615 0.00 0.00 0.00 4.17
280 281 7.979115 TCGTTTTTCTTCTATGGTTTTGTTG 57.021 32.000 0.00 0.00 0.00 3.33
281 282 8.989653 TTTCGTTTTTCTTCTATGGTTTTGTT 57.010 26.923 0.00 0.00 0.00 2.83
282 283 8.989653 TTTTCGTTTTTCTTCTATGGTTTTGT 57.010 26.923 0.00 0.00 0.00 2.83
305 306 2.498078 TCCTTGTTTCTTGCGGGTTTTT 59.502 40.909 0.00 0.00 0.00 1.94
306 307 2.104170 TCCTTGTTTCTTGCGGGTTTT 58.896 42.857 0.00 0.00 0.00 2.43
307 308 1.770294 TCCTTGTTTCTTGCGGGTTT 58.230 45.000 0.00 0.00 0.00 3.27
308 309 1.770294 TTCCTTGTTTCTTGCGGGTT 58.230 45.000 0.00 0.00 0.00 4.11
309 310 1.770294 TTTCCTTGTTTCTTGCGGGT 58.230 45.000 0.00 0.00 0.00 5.28
310 311 2.159170 TGTTTTCCTTGTTTCTTGCGGG 60.159 45.455 0.00 0.00 0.00 6.13
311 312 3.115554 CTGTTTTCCTTGTTTCTTGCGG 58.884 45.455 0.00 0.00 0.00 5.69
312 313 2.535574 GCTGTTTTCCTTGTTTCTTGCG 59.464 45.455 0.00 0.00 0.00 4.85
313 314 3.520569 TGCTGTTTTCCTTGTTTCTTGC 58.479 40.909 0.00 0.00 0.00 4.01
314 315 3.553105 GCTGCTGTTTTCCTTGTTTCTTG 59.447 43.478 0.00 0.00 0.00 3.02
315 316 3.734902 CGCTGCTGTTTTCCTTGTTTCTT 60.735 43.478 0.00 0.00 0.00 2.52
316 317 2.223572 CGCTGCTGTTTTCCTTGTTTCT 60.224 45.455 0.00 0.00 0.00 2.52
317 318 2.119457 CGCTGCTGTTTTCCTTGTTTC 58.881 47.619 0.00 0.00 0.00 2.78
318 319 1.748493 TCGCTGCTGTTTTCCTTGTTT 59.252 42.857 0.00 0.00 0.00 2.83
319 320 1.388547 TCGCTGCTGTTTTCCTTGTT 58.611 45.000 0.00 0.00 0.00 2.83
320 321 1.065551 GTTCGCTGCTGTTTTCCTTGT 59.934 47.619 0.00 0.00 0.00 3.16
321 322 1.758783 GTTCGCTGCTGTTTTCCTTG 58.241 50.000 0.00 0.00 0.00 3.61
322 323 0.307760 CGTTCGCTGCTGTTTTCCTT 59.692 50.000 0.00 0.00 0.00 3.36
323 324 0.531974 TCGTTCGCTGCTGTTTTCCT 60.532 50.000 0.00 0.00 0.00 3.36
324 325 0.306533 TTCGTTCGCTGCTGTTTTCC 59.693 50.000 0.00 0.00 0.00 3.13
325 326 2.099633 TTTCGTTCGCTGCTGTTTTC 57.900 45.000 0.00 0.00 0.00 2.29
326 327 2.604614 GGATTTCGTTCGCTGCTGTTTT 60.605 45.455 0.00 0.00 0.00 2.43
327 328 1.069227 GGATTTCGTTCGCTGCTGTTT 60.069 47.619 0.00 0.00 0.00 2.83
328 329 0.517316 GGATTTCGTTCGCTGCTGTT 59.483 50.000 0.00 0.00 0.00 3.16
329 330 1.626654 CGGATTTCGTTCGCTGCTGT 61.627 55.000 0.00 0.00 0.00 4.40
330 331 1.059369 CGGATTTCGTTCGCTGCTG 59.941 57.895 0.00 0.00 0.00 4.41
331 332 3.474806 CGGATTTCGTTCGCTGCT 58.525 55.556 0.00 0.00 0.00 4.24
340 341 1.523032 GGCCCAGGTACGGATTTCG 60.523 63.158 0.00 0.00 45.88 3.46
341 342 1.523032 CGGCCCAGGTACGGATTTC 60.523 63.158 0.00 0.00 0.00 2.17
342 343 2.587889 CGGCCCAGGTACGGATTT 59.412 61.111 0.00 0.00 0.00 2.17
364 365 1.510480 GCTGAAGCAAGTCGCCACTT 61.510 55.000 0.00 0.00 44.26 3.16
365 366 1.963338 GCTGAAGCAAGTCGCCACT 60.963 57.895 0.00 0.00 44.04 4.00
366 367 2.558313 GCTGAAGCAAGTCGCCAC 59.442 61.111 0.00 0.00 44.04 5.01
367 368 2.987282 TTCGCTGAAGCAAGTCGCCA 62.987 55.000 2.79 0.00 44.04 5.69
368 369 2.233007 CTTCGCTGAAGCAAGTCGCC 62.233 60.000 2.79 0.00 44.04 5.54
369 370 1.131420 CTTCGCTGAAGCAAGTCGC 59.869 57.895 2.79 0.00 42.21 5.19
370 371 1.784062 CCTTCGCTGAAGCAAGTCG 59.216 57.895 11.33 0.00 42.21 4.18
371 372 0.952984 AGCCTTCGCTGAAGCAAGTC 60.953 55.000 11.33 0.00 46.19 3.01
372 373 1.072159 AGCCTTCGCTGAAGCAAGT 59.928 52.632 11.33 0.00 46.19 3.16
373 374 3.978272 AGCCTTCGCTGAAGCAAG 58.022 55.556 11.33 5.52 46.19 4.01
387 388 2.041115 GGCGTCAAAAGGAGGAGCC 61.041 63.158 0.00 0.00 35.51 4.70
388 389 1.003233 AGGCGTCAAAAGGAGGAGC 60.003 57.895 0.00 0.00 33.18 4.70
389 390 1.301677 GCAGGCGTCAAAAGGAGGAG 61.302 60.000 0.00 0.00 33.18 3.69
390 391 1.302511 GCAGGCGTCAAAAGGAGGA 60.303 57.895 0.00 0.00 33.18 3.71
391 392 2.680913 CGCAGGCGTCAAAAGGAGG 61.681 63.158 5.34 0.00 34.35 4.30
392 393 2.680913 CCGCAGGCGTCAAAAGGAG 61.681 63.158 13.07 0.00 46.14 3.69
393 394 2.668212 CCGCAGGCGTCAAAAGGA 60.668 61.111 13.07 0.00 46.14 3.36
405 406 0.532862 ATCCTATTTGACGCCCGCAG 60.533 55.000 0.00 0.00 0.00 5.18
406 407 0.107410 AATCCTATTTGACGCCCGCA 60.107 50.000 0.00 0.00 0.00 5.69
407 408 1.021968 AAATCCTATTTGACGCCCGC 58.978 50.000 0.00 0.00 0.00 6.13
408 409 1.268539 GCAAATCCTATTTGACGCCCG 60.269 52.381 14.83 0.00 0.00 6.13
409 410 1.067060 GGCAAATCCTATTTGACGCCC 59.933 52.381 14.83 4.37 32.01 6.13
410 411 1.067060 GGGCAAATCCTATTTGACGCC 59.933 52.381 14.83 9.32 38.28 5.68
411 412 1.067060 GGGGCAAATCCTATTTGACGC 59.933 52.381 16.44 16.44 41.91 5.19
412 413 1.333619 CGGGGCAAATCCTATTTGACG 59.666 52.381 14.83 11.40 38.28 4.35
413 414 2.375146 ACGGGGCAAATCCTATTTGAC 58.625 47.619 14.83 12.15 36.71 3.18
414 415 2.818751 ACGGGGCAAATCCTATTTGA 57.181 45.000 14.83 0.00 34.39 2.69
415 416 3.885724 AAACGGGGCAAATCCTATTTG 57.114 42.857 7.80 7.80 34.39 2.32
416 417 3.958147 CCTAAACGGGGCAAATCCTATTT 59.042 43.478 0.00 0.00 34.39 1.40
417 418 3.203487 TCCTAAACGGGGCAAATCCTATT 59.797 43.478 0.00 0.00 34.39 1.73
418 419 2.781174 TCCTAAACGGGGCAAATCCTAT 59.219 45.455 0.00 0.00 34.39 2.57
419 420 2.198336 TCCTAAACGGGGCAAATCCTA 58.802 47.619 0.00 0.00 34.39 2.94
420 421 0.996583 TCCTAAACGGGGCAAATCCT 59.003 50.000 0.00 0.00 34.39 3.24
421 422 1.954382 GATCCTAAACGGGGCAAATCC 59.046 52.381 0.00 0.00 0.00 3.01
422 423 2.618709 CAGATCCTAAACGGGGCAAATC 59.381 50.000 0.00 0.00 0.00 2.17
423 424 2.654863 CAGATCCTAAACGGGGCAAAT 58.345 47.619 0.00 0.00 0.00 2.32
424 425 1.953311 GCAGATCCTAAACGGGGCAAA 60.953 52.381 0.00 0.00 0.00 3.68
425 426 0.393808 GCAGATCCTAAACGGGGCAA 60.394 55.000 0.00 0.00 0.00 4.52
426 427 1.223487 GCAGATCCTAAACGGGGCA 59.777 57.895 0.00 0.00 0.00 5.36
427 428 1.526225 GGCAGATCCTAAACGGGGC 60.526 63.158 0.00 0.00 0.00 5.80
428 429 0.179045 CAGGCAGATCCTAAACGGGG 60.179 60.000 0.00 0.00 45.52 5.73
429 430 0.815615 GCAGGCAGATCCTAAACGGG 60.816 60.000 0.00 0.00 45.52 5.28
430 431 0.179000 AGCAGGCAGATCCTAAACGG 59.821 55.000 0.00 0.00 45.52 4.44
431 432 1.576356 GAGCAGGCAGATCCTAAACG 58.424 55.000 0.00 0.00 45.52 3.60
438 439 0.249657 CTTACGGGAGCAGGCAGATC 60.250 60.000 0.00 0.00 0.00 2.75
439 440 0.978146 ACTTACGGGAGCAGGCAGAT 60.978 55.000 0.00 0.00 0.00 2.90
440 441 1.192146 AACTTACGGGAGCAGGCAGA 61.192 55.000 0.00 0.00 0.00 4.26
441 442 0.321653 AAACTTACGGGAGCAGGCAG 60.322 55.000 0.00 0.00 0.00 4.85
442 443 0.321298 GAAACTTACGGGAGCAGGCA 60.321 55.000 0.00 0.00 0.00 4.75
443 444 0.321298 TGAAACTTACGGGAGCAGGC 60.321 55.000 0.00 0.00 0.00 4.85
444 445 1.002087 ACTGAAACTTACGGGAGCAGG 59.998 52.381 0.00 0.00 0.00 4.85
445 446 2.457366 ACTGAAACTTACGGGAGCAG 57.543 50.000 0.00 0.00 0.00 4.24
446 447 2.922740 AACTGAAACTTACGGGAGCA 57.077 45.000 0.00 0.00 0.00 4.26
447 448 2.998670 GGTAACTGAAACTTACGGGAGC 59.001 50.000 0.00 0.00 0.00 4.70
448 449 3.057315 TCGGTAACTGAAACTTACGGGAG 60.057 47.826 0.00 0.00 0.00 4.30
449 450 2.890311 TCGGTAACTGAAACTTACGGGA 59.110 45.455 0.00 0.00 0.00 5.14
450 451 3.302365 TCGGTAACTGAAACTTACGGG 57.698 47.619 0.00 0.00 0.00 5.28
451 452 5.655893 TTTTCGGTAACTGAAACTTACGG 57.344 39.130 0.00 0.00 38.28 4.02
452 453 7.851963 TCAAATTTTCGGTAACTGAAACTTACG 59.148 33.333 0.00 0.00 38.28 3.18
453 454 9.505995 TTCAAATTTTCGGTAACTGAAACTTAC 57.494 29.630 0.00 0.00 38.28 2.34
454 455 9.724839 CTTCAAATTTTCGGTAACTGAAACTTA 57.275 29.630 0.00 0.00 38.28 2.24
455 456 8.463607 TCTTCAAATTTTCGGTAACTGAAACTT 58.536 29.630 0.00 0.00 38.28 2.66
456 457 7.992008 TCTTCAAATTTTCGGTAACTGAAACT 58.008 30.769 0.00 0.00 38.28 2.66
457 458 8.623310 TTCTTCAAATTTTCGGTAACTGAAAC 57.377 30.769 0.00 0.00 38.28 2.78
458 459 9.640963 TTTTCTTCAAATTTTCGGTAACTGAAA 57.359 25.926 0.00 0.00 37.33 2.69
459 460 9.078753 GTTTTCTTCAAATTTTCGGTAACTGAA 57.921 29.630 0.00 0.00 0.00 3.02
460 461 8.463607 AGTTTTCTTCAAATTTTCGGTAACTGA 58.536 29.630 0.00 0.00 0.00 3.41
461 462 8.628882 AGTTTTCTTCAAATTTTCGGTAACTG 57.371 30.769 0.00 0.00 0.00 3.16
479 480 4.081807 CCTACACCCTAACGCTAGTTTTCT 60.082 45.833 0.00 0.00 41.49 2.52
703 722 3.069318 GAGCGGACGAGGAGGGTT 61.069 66.667 0.00 0.00 0.00 4.11
720 740 1.507174 GAACGGACGAGGAGTGGAG 59.493 63.158 0.00 0.00 0.00 3.86
822 842 4.803426 CTGCTGTCGGGTCTCGCC 62.803 72.222 0.00 0.00 39.05 5.54
824 844 3.691744 GAGCTGCTGTCGGGTCTCG 62.692 68.421 7.01 0.00 41.60 4.04
825 845 2.183046 GAGCTGCTGTCGGGTCTC 59.817 66.667 7.01 0.00 41.60 3.36
826 846 3.753434 CGAGCTGCTGTCGGGTCT 61.753 66.667 7.01 0.00 42.41 3.85
906 930 7.066284 CAGTGATATCTGAAAACCGGATTCTTT 59.934 37.037 9.46 1.42 41.08 2.52
1189 1235 1.200519 TTACCTCCTTGCGCACCTAT 58.799 50.000 11.12 0.00 0.00 2.57
1190 1236 1.134521 CATTACCTCCTTGCGCACCTA 60.135 52.381 11.12 0.00 0.00 3.08
1371 1442 2.972348 ACACAGGTAGGAAGGAGAACA 58.028 47.619 0.00 0.00 0.00 3.18
1372 1443 4.353383 AAACACAGGTAGGAAGGAGAAC 57.647 45.455 0.00 0.00 0.00 3.01
1436 1544 9.166126 CAAAACGTTCTTAGGAATTTAGTCAAC 57.834 33.333 0.00 0.00 33.71 3.18
1445 1553 7.754851 ACCAATACAAAACGTTCTTAGGAAT 57.245 32.000 0.00 0.00 33.71 3.01
1447 1555 6.543100 ACAACCAATACAAAACGTTCTTAGGA 59.457 34.615 0.00 0.00 0.00 2.94
1448 1556 6.731164 ACAACCAATACAAAACGTTCTTAGG 58.269 36.000 0.00 0.40 0.00 2.69
1449 1557 8.623310 AAACAACCAATACAAAACGTTCTTAG 57.377 30.769 0.00 0.00 0.00 2.18
1450 1558 9.719279 CTAAACAACCAATACAAAACGTTCTTA 57.281 29.630 0.00 0.00 0.00 2.10
1451 1559 8.245491 ACTAAACAACCAATACAAAACGTTCTT 58.755 29.630 0.00 0.00 0.00 2.52
1490 1598 6.573434 TCGATTAGCACATAACAACAGATCT 58.427 36.000 0.00 0.00 0.00 2.75
1491 1599 6.828502 TCGATTAGCACATAACAACAGATC 57.171 37.500 0.00 0.00 0.00 2.75
1831 2039 6.400568 CAATGCATAACTTTGGGAAAGACAT 58.599 36.000 0.00 0.00 41.02 3.06
1897 2105 2.031682 GGTCAGCCTATAAAAGCATGCG 60.032 50.000 13.01 0.00 0.00 4.73
1918 2127 0.511221 CACTAACCCTCGCACAAACG 59.489 55.000 0.00 0.00 0.00 3.60
2025 2234 9.483489 TTCATAAGACCCTACATAACTAGAACA 57.517 33.333 0.00 0.00 0.00 3.18
2100 2312 0.680280 CAGCTGCTTCCAGGCTTGAT 60.680 55.000 0.00 0.00 39.54 2.57
2245 2459 9.793259 TTGATTCAGGAACTACTTTATGTCTTT 57.207 29.630 0.00 0.00 36.02 2.52
2246 2460 9.793259 TTTGATTCAGGAACTACTTTATGTCTT 57.207 29.630 0.00 0.00 36.02 3.01
2247 2461 9.965902 ATTTGATTCAGGAACTACTTTATGTCT 57.034 29.630 0.00 0.00 36.02 3.41
2324 2543 8.294341 GCACTTGCGAACTATATCAACTATAA 57.706 34.615 0.00 0.00 0.00 0.98
2349 2576 5.079406 CACCTTTTACACGAATGAACATCG 58.921 41.667 0.00 0.00 45.47 3.84
2450 2677 8.956426 AGGTTGTATGTCGATTATTCAACAATT 58.044 29.630 23.32 13.25 37.47 2.32
2451 2678 8.506168 AGGTTGTATGTCGATTATTCAACAAT 57.494 30.769 23.32 15.00 37.47 2.71
2452 2679 7.915293 AGGTTGTATGTCGATTATTCAACAA 57.085 32.000 23.32 12.57 37.47 2.83
2580 2817 4.151157 GCTGCAATCACCAAAACAGAAATC 59.849 41.667 0.00 0.00 0.00 2.17
2745 2982 8.316214 ACAAGATTGTTCTTTAATGGCATGAAT 58.684 29.630 0.00 0.00 40.28 2.57
2785 3041 4.764823 TGCCCAAACAAATGTCCTAGTTAG 59.235 41.667 0.00 0.00 0.00 2.34
2980 3236 4.494091 ACATCTTATAGCTGCAACCAGT 57.506 40.909 1.02 0.00 41.26 4.00
3023 3279 6.430616 TCCGTCCCAAATTATAAGACGTTTTT 59.569 34.615 17.64 0.00 46.62 1.94
3049 3305 7.161404 TCAATAAACATCAAGCAGACACTACT 58.839 34.615 0.00 0.00 0.00 2.57
3162 3418 5.923204 ACATCCTTATGATTCTGTCAGGTC 58.077 41.667 0.00 0.00 40.92 3.85
3294 3550 3.060674 CAGCTGAATCATAAGAAGCGACG 60.061 47.826 8.42 0.00 38.90 5.12
3297 3553 4.118410 AGACAGCTGAATCATAAGAAGCG 58.882 43.478 23.35 0.00 38.90 4.68
3494 3751 4.156008 AGGATTTTCACCATAACGAAGTGC 59.844 41.667 0.00 0.00 45.00 4.40
3614 3871 5.289193 CACGAACTGGAAAATAAATGCATGG 59.711 40.000 0.00 0.00 0.00 3.66
3696 3954 1.105457 ATGGAATTCGTGGCACCATG 58.895 50.000 12.86 2.24 39.45 3.66
3769 4036 2.172505 TGAGTTCACAAGGAGCAGGAAA 59.827 45.455 0.00 0.00 0.00 3.13
3792 4059 0.882927 TCGCCGAACTTTCCAACAGG 60.883 55.000 0.00 0.00 0.00 4.00
3799 4066 1.079503 AGAAGCATCGCCGAACTTTC 58.920 50.000 7.12 4.03 0.00 2.62
3807 4074 2.317530 ACCTCTAAAGAAGCATCGCC 57.682 50.000 0.00 0.00 0.00 5.54
3823 4090 3.434309 AGCATGCCAGTTATGAAAACCT 58.566 40.909 15.66 0.00 0.00 3.50
4128 4398 2.291209 TGCAAGAACATGTCATGGGT 57.709 45.000 17.08 4.46 33.60 4.51
4148 4418 3.277142 TTGAGATGTGCATGATGAGCT 57.723 42.857 0.00 0.00 0.00 4.09
4156 4426 4.758688 TCACGACTAATTGAGATGTGCAT 58.241 39.130 0.00 0.00 35.30 3.96
4157 4427 4.176271 CTCACGACTAATTGAGATGTGCA 58.824 43.478 0.00 0.00 41.65 4.57
4158 4428 4.177026 ACTCACGACTAATTGAGATGTGC 58.823 43.478 5.63 0.00 41.65 4.57
4159 4429 7.702348 TCATAACTCACGACTAATTGAGATGTG 59.298 37.037 5.63 3.02 41.65 3.21
4161 4431 8.131731 TCTCATAACTCACGACTAATTGAGATG 58.868 37.037 5.63 0.83 41.65 2.90
4162 4432 8.226819 TCTCATAACTCACGACTAATTGAGAT 57.773 34.615 5.63 0.00 41.65 2.75
4179 4449 7.454225 AGATTATTAGTTGCCCCTCTCATAAC 58.546 38.462 0.00 0.00 0.00 1.89
4182 4452 6.521527 AAGATTATTAGTTGCCCCTCTCAT 57.478 37.500 0.00 0.00 0.00 2.90
4461 4740 0.251386 AGCTCTCTCAGAACCCGTCA 60.251 55.000 0.00 0.00 0.00 4.35
4573 4852 2.158623 TCCTTGGCACACTGAGAAATGT 60.159 45.455 0.00 0.00 39.29 2.71
4600 4879 4.475944 CAAACTGAAATTTACTCGCCCTG 58.524 43.478 0.00 0.00 0.00 4.45
4679 4959 2.868583 CAGTGAGTTGTGAGTTGTGGAG 59.131 50.000 0.00 0.00 0.00 3.86
4730 5464 1.554160 ACTCACAAGAGGATCAGCCAG 59.446 52.381 0.00 0.00 46.44 4.85
4733 5467 1.338484 TGCACTCACAAGAGGATCAGC 60.338 52.381 0.00 0.00 46.44 4.26
4932 5675 1.067846 ACGCGAGTCAGTTTATCAGCA 60.068 47.619 15.93 0.00 44.19 4.41
5075 5818 0.612453 GGTGAAGAGGAGGGAGACGT 60.612 60.000 0.00 0.00 0.00 4.34
5226 5973 7.331791 CCCCTGTCAATACTATTATTCCTAGC 58.668 42.308 0.00 0.00 0.00 3.42
5238 5985 1.689273 GATCTCGCCCCTGTCAATACT 59.311 52.381 0.00 0.00 0.00 2.12
5243 5990 1.541310 AAACGATCTCGCCCCTGTCA 61.541 55.000 0.00 0.00 44.43 3.58
5255 6002 6.771076 TGTGATACAACATAGCAAAACGATC 58.229 36.000 0.00 0.00 0.00 3.69
5305 6077 5.001874 CCCTGGTTTTCTGACCTTAGTTAC 58.998 45.833 0.00 0.00 40.47 2.50
5335 6119 2.849880 TGCAAACACAGTTTCTGCTC 57.150 45.000 7.73 0.00 34.37 4.26
5353 6137 4.436332 TGATTCATGTCGAGGTCTGAATG 58.564 43.478 13.36 0.00 38.19 2.67
5507 7373 0.251354 ACCTACACTCAGGCAGCATG 59.749 55.000 0.00 0.00 39.53 4.06
5521 7390 1.065251 CGTTCTCCGGAAGCTACCTAC 59.935 57.143 5.23 0.00 31.46 3.18
5522 7391 1.065199 TCGTTCTCCGGAAGCTACCTA 60.065 52.381 5.23 0.00 37.11 3.08
5523 7392 0.323178 TCGTTCTCCGGAAGCTACCT 60.323 55.000 5.23 0.00 37.11 3.08
5524 7393 0.529378 TTCGTTCTCCGGAAGCTACC 59.471 55.000 5.23 0.00 37.11 3.18
5540 7409 5.679906 ACAAAAACGATCATTCAGTCTTCG 58.320 37.500 0.00 0.00 35.99 3.79
5587 7465 7.881142 TCCGAAGAATGCTTCTAAATTTCAAA 58.119 30.769 11.79 0.00 46.64 2.69
5610 7488 1.813192 CTTCTCGGTGCTCCTCTCC 59.187 63.158 2.85 0.00 0.00 3.71
5624 7514 6.488769 AGATTGAGATCTCATTCTGCTTCT 57.511 37.500 33.76 20.66 44.12 2.85
5841 8402 3.061848 CATTGCCCTCCGCCGTTT 61.062 61.111 0.00 0.00 36.24 3.60
5843 8404 4.344865 AACATTGCCCTCCGCCGT 62.345 61.111 0.00 0.00 36.24 5.68
5909 8470 2.034879 CATTGACTGGACGGCGCTT 61.035 57.895 6.90 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.