Multiple sequence alignment - TraesCS1B01G297500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G297500 chr1B 100.000 4517 0 0 1 4517 517905410 517900894 0.000000e+00 8342.0
1 TraesCS1B01G297500 chr1B 90.449 178 11 3 3659 3833 423710996 423711170 3.510000e-56 230.0
2 TraesCS1B01G297500 chr1D 91.844 3715 178 55 2 3660 385619115 385615470 0.000000e+00 5066.0
3 TraesCS1B01G297500 chr1D 91.583 499 30 8 4027 4517 385606798 385606304 0.000000e+00 678.0
4 TraesCS1B01G297500 chr1D 87.838 74 9 0 1 74 385803943 385803870 2.240000e-13 87.9
5 TraesCS1B01G297500 chr1D 97.826 46 1 0 3817 3862 385615473 385615428 3.750000e-11 80.5
6 TraesCS1B01G297500 chr1A 90.528 1837 109 20 2 1799 485341363 485339553 0.000000e+00 2368.0
7 TraesCS1B01G297500 chr1A 92.673 1433 83 12 2231 3660 485339150 485337737 0.000000e+00 2045.0
8 TraesCS1B01G297500 chr1A 92.040 402 26 4 4118 4517 485336819 485336422 1.100000e-155 560.0
9 TraesCS1B01G297500 chr1A 95.681 301 7 1 1916 2216 485339558 485339264 3.160000e-131 479.0
10 TraesCS1B01G297500 chr1A 98.611 72 1 0 4033 4104 485336872 485336801 1.320000e-25 128.0
11 TraesCS1B01G297500 chr1A 97.959 49 1 0 3849 3897 485336936 485336888 8.050000e-13 86.1
12 TraesCS1B01G297500 chr1A 96.000 50 2 0 3817 3866 485337740 485337691 1.040000e-11 82.4
13 TraesCS1B01G297500 chr5D 92.771 166 9 1 3659 3821 312116189 312116354 2.100000e-58 237.0
14 TraesCS1B01G297500 chr5D 91.429 175 10 3 3658 3827 322384932 322385106 7.550000e-58 235.0
15 TraesCS1B01G297500 chr5D 89.916 119 10 2 3912 4029 498400300 498400417 7.830000e-33 152.0
16 TraesCS1B01G297500 chr3A 90.556 180 12 4 3657 3834 101895305 101895129 2.720000e-57 233.0
17 TraesCS1B01G297500 chr2B 90.110 182 12 3 3659 3834 770659857 770659676 9.770000e-57 231.0
18 TraesCS1B01G297500 chr2B 85.321 218 25 6 3640 3853 47421797 47421583 7.610000e-53 219.0
19 TraesCS1B01G297500 chr2B 92.308 117 9 0 3912 4028 26551507 26551623 2.800000e-37 167.0
20 TraesCS1B01G297500 chr2B 90.598 117 11 0 3912 4028 26533837 26533953 6.050000e-34 156.0
21 TraesCS1B01G297500 chr3B 89.247 186 17 3 3658 3841 580469271 580469455 3.510000e-56 230.0
22 TraesCS1B01G297500 chr4D 90.341 176 13 2 3659 3831 75782053 75782227 1.260000e-55 228.0
23 TraesCS1B01G297500 chr4B 89.560 182 15 2 3645 3823 488893299 488893119 1.260000e-55 228.0
24 TraesCS1B01G297500 chr5A 89.431 123 11 2 3910 4031 505594261 505594140 2.180000e-33 154.0
25 TraesCS1B01G297500 chr5A 88.976 127 10 4 3908 4032 651755796 651755672 2.180000e-33 154.0
26 TraesCS1B01G297500 chr7B 88.525 122 12 2 3911 4031 444992948 444992828 3.640000e-31 147.0
27 TraesCS1B01G297500 chrUn 85.507 138 18 2 3896 4032 80550589 80550725 4.710000e-30 143.0
28 TraesCS1B01G297500 chr5B 86.364 132 16 2 3898 4029 134791816 134791687 4.710000e-30 143.0
29 TraesCS1B01G297500 chr2D 85.507 138 18 2 3896 4032 96783265 96783129 4.710000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G297500 chr1B 517900894 517905410 4516 True 8342.000000 8342 100.000000 1 4517 1 chr1B.!!$R1 4516
1 TraesCS1B01G297500 chr1D 385615428 385619115 3687 True 2573.250000 5066 94.835000 2 3862 2 chr1D.!!$R3 3860
2 TraesCS1B01G297500 chr1A 485336422 485341363 4941 True 821.214286 2368 94.784571 2 4517 7 chr1A.!!$R1 4515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.757188 ATCTGCGCCAGGCTACTACT 60.757 55.0 10.54 0.0 44.05 2.57 F
1355 1412 0.031449 GATCGCGAGGAGAAGGAAGG 59.969 60.0 16.66 0.0 0.00 3.46 F
1891 1974 0.251073 AAAATTGGGCCATGCTCAGC 59.749 50.0 7.26 0.0 41.35 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2198 0.247736 CCCTCCTGGCGTATATCTGC 59.752 60.0 0.00 0.0 0.00 4.26 R
3204 3386 0.105224 TTGTTTCTCCGCGAACTCCA 59.895 50.0 8.23 0.0 0.00 3.86 R
3888 4845 0.179205 GACTCATGCACTTGCGCTTC 60.179 55.0 9.73 0.0 45.83 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.074239 CCATCTTTATCAAGGGGAGGAAGAT 59.926 44.000 0.00 0.00 39.63 2.40
75 76 4.412060 AGGGGAGGAAGATGGTATCTAG 57.588 50.000 0.00 0.00 39.08 2.43
76 77 3.735442 AGGGGAGGAAGATGGTATCTAGT 59.265 47.826 0.00 0.00 39.08 2.57
84 85 5.416326 GGAAGATGGTATCTAGTACGCTGAT 59.584 44.000 0.00 4.32 39.08 2.90
96 97 2.654749 ACGCTGATCATCTTCGTTCA 57.345 45.000 0.00 0.00 0.00 3.18
117 118 8.702438 CGTTCAATTCTGCAAGATTACAAAAAT 58.298 29.630 0.00 0.00 46.36 1.82
119 120 9.761504 TTCAATTCTGCAAGATTACAAAAATCA 57.238 25.926 0.00 0.00 46.36 2.57
165 166 1.077169 GAAGGAACAAGGGGGTGGAAT 59.923 52.381 0.00 0.00 0.00 3.01
199 200 6.948886 AGTAGATCAAACTAACCAGAGTCTGA 59.051 38.462 22.09 0.46 32.44 3.27
304 305 0.757188 ATCTGCGCCAGGCTACTACT 60.757 55.000 10.54 0.00 44.05 2.57
306 307 2.356818 CTGCGCCAGGCTACTACTCC 62.357 65.000 10.54 0.00 44.05 3.85
317 318 1.072648 CTACTACTCCCCTCCTCCTCG 59.927 61.905 0.00 0.00 0.00 4.63
325 335 2.716017 CCTCCTCCTCGTCCTGCAC 61.716 68.421 0.00 0.00 0.00 4.57
362 372 3.069586 CCATCATGGCATCAAAATCTGCT 59.930 43.478 0.00 0.00 38.45 4.24
401 411 4.511246 ATCGCCTCCCCGTCCGTA 62.511 66.667 0.00 0.00 0.00 4.02
522 532 4.122776 CCCTACTCGAATCTGTGGAATTG 58.877 47.826 0.00 0.00 0.00 2.32
698 721 1.265454 CGGAGGCTCTAGGGTTTGGT 61.265 60.000 15.23 0.00 0.00 3.67
700 723 1.574263 GAGGCTCTAGGGTTTGGTCT 58.426 55.000 7.40 0.00 0.00 3.85
767 790 0.941463 GTGGTGATATCGGCGAGCTG 60.941 60.000 17.22 0.00 0.00 4.24
833 862 2.195956 GGGCTTATGGGCTGGACC 59.804 66.667 0.00 0.00 40.65 4.46
879 908 3.670377 GGTTGGTTCGTGGGCTGC 61.670 66.667 0.00 0.00 0.00 5.25
1203 1259 5.048364 AGTTTTGCTGCCGTAAACATCATTA 60.048 36.000 18.06 0.00 34.93 1.90
1244 1301 7.964604 TGATGATTTTTGCATTTTGTCATCA 57.035 28.000 19.56 19.56 44.60 3.07
1247 1304 6.946165 TGATTTTTGCATTTTGTCATCACAC 58.054 32.000 0.00 0.00 29.76 3.82
1324 1381 1.674764 CGTGCAGAGGATCCTGAGCT 61.675 60.000 26.69 14.31 36.29 4.09
1344 1401 1.586564 GTCGGAACCTGATCGCGAG 60.587 63.158 16.66 2.71 0.00 5.03
1355 1412 0.031449 GATCGCGAGGAGAAGGAAGG 59.969 60.000 16.66 0.00 0.00 3.46
1386 1462 1.978580 ACTGAAACCGTGGGATTCTCT 59.021 47.619 6.28 0.00 35.83 3.10
1387 1463 2.372172 ACTGAAACCGTGGGATTCTCTT 59.628 45.455 6.28 0.00 35.83 2.85
1417 1493 4.438148 TCGAATTCCAGTCGATGCAAATA 58.562 39.130 0.00 0.00 42.31 1.40
1427 1503 1.864711 CGATGCAAATAACCGATCCGT 59.135 47.619 0.00 0.00 0.00 4.69
1528 1608 0.951040 CCAGCACGTCCACTTCTTCC 60.951 60.000 0.00 0.00 0.00 3.46
1538 1618 1.304217 ACTTCTTCCTCCTCCGCGA 60.304 57.895 8.23 0.00 0.00 5.87
1612 1692 2.743928 GACGCTGTGGAGGCCAAG 60.744 66.667 5.01 0.00 34.18 3.61
1653 1733 0.796312 CAAAACGATGGTGGACTCCG 59.204 55.000 0.00 0.00 0.00 4.63
1656 1736 2.105128 CGATGGTGGACTCCGAGC 59.895 66.667 0.00 0.00 0.00 5.03
1755 1838 2.665603 GAAGGAGGAGCTTGCCGT 59.334 61.111 0.00 0.00 0.00 5.68
1812 1895 0.464036 ATGCATCAGCCATTGCCAAG 59.536 50.000 0.00 0.00 41.13 3.61
1824 1907 3.243975 CCATTGCCAAGCTTGTTTCTCTT 60.244 43.478 24.35 0.66 0.00 2.85
1850 1933 6.207614 GGGAGGCCAAAATCTGAATAGTTATC 59.792 42.308 5.01 0.00 0.00 1.75
1856 1939 8.131731 GCCAAAATCTGAATAGTTATCCTGAAC 58.868 37.037 0.00 0.00 0.00 3.18
1860 1943 8.649973 AATCTGAATAGTTATCCTGAACGTTC 57.350 34.615 21.42 21.42 34.36 3.95
1863 1946 7.759886 TCTGAATAGTTATCCTGAACGTTCAAG 59.240 37.037 29.32 24.08 37.85 3.02
1864 1947 6.816640 TGAATAGTTATCCTGAACGTTCAAGG 59.183 38.462 29.32 28.13 36.64 3.61
1865 1948 4.884668 AGTTATCCTGAACGTTCAAGGA 57.115 40.909 32.62 32.62 38.19 3.36
1866 1949 5.422214 AGTTATCCTGAACGTTCAAGGAT 57.578 39.130 36.66 36.66 42.47 3.24
1868 1951 6.942976 AGTTATCCTGAACGTTCAAGGATAA 58.057 36.000 38.58 38.58 44.22 1.75
1870 1953 7.881232 AGTTATCCTGAACGTTCAAGGATAAAA 59.119 33.333 40.55 32.57 45.60 1.52
1871 1954 6.743575 ATCCTGAACGTTCAAGGATAAAAG 57.256 37.500 35.52 22.28 40.33 2.27
1872 1955 5.860611 TCCTGAACGTTCAAGGATAAAAGA 58.139 37.500 29.71 16.00 36.64 2.52
1873 1956 6.292923 TCCTGAACGTTCAAGGATAAAAGAA 58.707 36.000 29.71 15.50 36.64 2.52
1874 1957 6.768861 TCCTGAACGTTCAAGGATAAAAGAAA 59.231 34.615 29.71 15.02 36.64 2.52
1875 1958 7.283580 TCCTGAACGTTCAAGGATAAAAGAAAA 59.716 33.333 29.71 14.52 36.64 2.29
1876 1959 8.082242 CCTGAACGTTCAAGGATAAAAGAAAAT 58.918 33.333 29.32 0.00 36.64 1.82
1877 1960 9.463443 CTGAACGTTCAAGGATAAAAGAAAATT 57.537 29.630 29.32 0.00 36.64 1.82
1878 1961 9.243637 TGAACGTTCAAGGATAAAAGAAAATTG 57.756 29.630 27.94 0.00 33.55 2.32
1879 1962 8.587952 AACGTTCAAGGATAAAAGAAAATTGG 57.412 30.769 0.00 0.00 0.00 3.16
1880 1963 7.151976 ACGTTCAAGGATAAAAGAAAATTGGG 58.848 34.615 0.00 0.00 0.00 4.12
1881 1964 6.090763 CGTTCAAGGATAAAAGAAAATTGGGC 59.909 38.462 0.00 0.00 0.00 5.36
1882 1965 6.048732 TCAAGGATAAAAGAAAATTGGGCC 57.951 37.500 0.00 0.00 0.00 5.80
1883 1966 5.545723 TCAAGGATAAAAGAAAATTGGGCCA 59.454 36.000 0.00 0.00 0.00 5.36
1884 1967 6.215227 TCAAGGATAAAAGAAAATTGGGCCAT 59.785 34.615 7.26 0.00 0.00 4.40
1885 1968 5.993055 AGGATAAAAGAAAATTGGGCCATG 58.007 37.500 7.26 0.00 0.00 3.66
1886 1969 4.576053 GGATAAAAGAAAATTGGGCCATGC 59.424 41.667 7.26 0.00 0.00 4.06
1887 1970 3.793819 AAAAGAAAATTGGGCCATGCT 57.206 38.095 7.26 0.00 0.00 3.79
1888 1971 3.339253 AAAGAAAATTGGGCCATGCTC 57.661 42.857 7.26 1.89 0.00 4.26
1889 1972 1.941377 AGAAAATTGGGCCATGCTCA 58.059 45.000 7.26 0.00 37.19 4.26
1890 1973 1.829222 AGAAAATTGGGCCATGCTCAG 59.171 47.619 7.26 0.00 41.35 3.35
1891 1974 0.251073 AAAATTGGGCCATGCTCAGC 59.749 50.000 7.26 0.00 41.35 4.26
1892 1975 0.905809 AAATTGGGCCATGCTCAGCA 60.906 50.000 7.26 0.00 41.35 4.41
1893 1976 1.327690 AATTGGGCCATGCTCAGCAG 61.328 55.000 7.26 0.00 41.35 4.24
1894 1977 2.219449 ATTGGGCCATGCTCAGCAGA 62.219 55.000 7.26 0.00 41.35 4.26
1895 1978 2.044650 GGGCCATGCTCAGCAGAA 60.045 61.111 5.13 0.00 43.65 3.02
1896 1979 2.413142 GGGCCATGCTCAGCAGAAC 61.413 63.158 5.13 0.00 43.65 3.01
1897 1980 1.378250 GGCCATGCTCAGCAGAACT 60.378 57.895 5.13 0.00 43.65 3.01
1898 1981 1.375098 GGCCATGCTCAGCAGAACTC 61.375 60.000 5.13 0.00 43.65 3.01
1899 1982 0.675837 GCCATGCTCAGCAGAACTCA 60.676 55.000 5.13 0.00 43.65 3.41
1900 1983 1.817357 CCATGCTCAGCAGAACTCAA 58.183 50.000 5.13 0.00 43.65 3.02
1908 1991 3.933955 CTCAGCAGAACTCAAGGAAGATG 59.066 47.826 0.00 0.00 0.00 2.90
1940 2023 5.693555 TGCATGATCACATTTCGATCTACTC 59.306 40.000 0.00 0.00 40.03 2.59
1941 2024 5.164109 GCATGATCACATTTCGATCTACTCG 60.164 44.000 0.00 0.00 40.67 4.18
1942 2025 5.917447 CATGATCACATTTCGATCTACTCGT 59.083 40.000 0.00 0.00 40.40 4.18
2115 2198 0.526211 TGATGACGAGGGTTCAGACG 59.474 55.000 0.00 0.00 0.00 4.18
2224 2307 4.440525 GGAGCATCATCTCATAGCTAGCTC 60.441 50.000 23.26 14.27 43.71 4.09
2236 2418 1.204941 AGCTAGCTCAACGTAACCTGG 59.795 52.381 12.68 0.00 0.00 4.45
2280 2462 1.737838 TTAGCGCAGATTGGTGAAGG 58.262 50.000 11.47 0.00 0.00 3.46
2380 2562 2.062177 GGCCCTGTCCTACGCCTTA 61.062 63.158 0.00 0.00 38.41 2.69
2396 2578 1.341531 CCTTATCTCACCAGGTAGCCG 59.658 57.143 0.00 0.00 0.00 5.52
2412 2594 0.876342 GCCGTCGGATCTCCATTGTC 60.876 60.000 17.49 0.00 35.14 3.18
2463 2645 1.000618 CTCTGCTGAACTCACTCTGCA 59.999 52.381 5.27 5.27 44.87 4.41
2466 2648 0.447011 GCTGAACTCACTCTGCATGC 59.553 55.000 11.82 11.82 39.39 4.06
2500 2682 1.920835 GTGGAGGAACAGGAGCCCT 60.921 63.158 0.00 0.00 0.00 5.19
2522 2704 0.541863 TTCTTCATCTTCCTCGGGGC 59.458 55.000 0.00 0.00 0.00 5.80
2572 2754 0.324943 CTCCAACGTTCATGGACCCT 59.675 55.000 3.27 0.00 41.98 4.34
2598 2780 2.437897 CAACTGGGGCTGGAGCTT 59.562 61.111 0.00 0.00 41.70 3.74
2722 2904 1.685765 CCCGAGGGTGTCCATCTCA 60.686 63.158 0.00 0.00 34.83 3.27
2877 3059 4.313819 GGGTAGCCCGTTCAAAGG 57.686 61.111 0.00 0.00 32.13 3.11
2936 3118 4.335647 AGCACCTGGGGACAAGCG 62.336 66.667 0.00 0.00 42.06 4.68
2940 3122 3.953775 CCTGGGGACAAGCGGTGT 61.954 66.667 0.00 0.00 45.74 4.16
3023 3205 3.775654 CGGGGAGGCTGAGTCCAC 61.776 72.222 0.00 0.00 35.57 4.02
3026 3208 2.716017 GGGAGGCTGAGTCCACGAG 61.716 68.421 0.00 0.00 35.57 4.18
3037 3219 1.745864 TCCACGAGCGAGAGAGGTC 60.746 63.158 0.00 0.00 35.48 3.85
3299 3481 1.668101 GGAGATCAGGACGAAGCGGT 61.668 60.000 0.00 0.00 0.00 5.68
3325 3507 2.837291 CCCAGGCTCTAGCTCGCT 60.837 66.667 1.39 0.00 41.70 4.93
3353 3535 0.944311 GTATATCCACGGTGGCAGCG 60.944 60.000 34.40 34.40 45.69 5.18
3364 3547 1.226859 TGGCAGCGCGATACTGTAC 60.227 57.895 12.10 6.22 37.47 2.90
3368 3551 0.027716 CAGCGCGATACTGTACGAGT 59.972 55.000 12.10 3.91 38.88 4.18
3399 3582 8.514136 TTATTTTGTTGCCTAGTTTCGAATTG 57.486 30.769 0.00 0.00 0.00 2.32
3431 3614 6.673106 AGCGTTTTTGGTCATTTTTGTTTTT 58.327 28.000 0.00 0.00 0.00 1.94
3468 3651 3.242188 GCGCGTTCGGTACAAATTTATCT 60.242 43.478 8.43 0.00 35.95 1.98
3472 3655 6.236838 CGCGTTCGGTACAAATTTATCTTTTG 60.237 38.462 0.00 0.00 39.43 2.44
3473 3656 6.797995 GCGTTCGGTACAAATTTATCTTTTGA 59.202 34.615 3.39 0.00 37.48 2.69
3474 3657 7.007099 GCGTTCGGTACAAATTTATCTTTTGAG 59.993 37.037 3.39 0.00 37.48 3.02
3475 3658 8.013378 CGTTCGGTACAAATTTATCTTTTGAGT 58.987 33.333 3.39 0.00 37.48 3.41
3515 3698 9.145865 GTCTAAAGACTCTTTCTATCTTTGTGG 57.854 37.037 7.33 0.92 41.57 4.17
3518 3701 8.558973 AAAGACTCTTTCTATCTTTGTGGATG 57.441 34.615 0.00 0.00 40.35 3.51
3519 3702 6.648192 AGACTCTTTCTATCTTTGTGGATGG 58.352 40.000 0.00 0.00 30.17 3.51
3520 3703 6.441924 AGACTCTTTCTATCTTTGTGGATGGA 59.558 38.462 0.00 0.00 32.69 3.41
3540 3723 9.143631 GGATGGAGTATTATTTAAAATGCATGC 57.856 33.333 11.82 11.82 0.00 4.06
3603 3787 1.968704 TGTACCAAACGTGCATGGAA 58.031 45.000 18.90 4.77 39.12 3.53
3611 3795 2.616330 CGTGCATGGAACCGCTGTT 61.616 57.895 0.00 0.00 37.42 3.16
3624 3808 2.271800 CCGCTGTTCACCTTAGATGTC 58.728 52.381 0.00 0.00 0.00 3.06
3655 3840 8.108782 CCGAGTTTTCTTGATTAATCGAAGTAC 58.891 37.037 18.74 14.08 33.28 2.73
3656 3841 8.644619 CGAGTTTTCTTGATTAATCGAAGTACA 58.355 33.333 18.74 7.63 33.28 2.90
3657 3842 9.959775 GAGTTTTCTTGATTAATCGAAGTACAG 57.040 33.333 18.74 4.98 0.00 2.74
3658 3843 9.490379 AGTTTTCTTGATTAATCGAAGTACAGT 57.510 29.630 18.74 9.30 0.00 3.55
3662 3847 9.784680 TTCTTGATTAATCGAAGTACAGTACTC 57.215 33.333 13.86 6.86 38.26 2.59
3663 3848 8.404000 TCTTGATTAATCGAAGTACAGTACTCC 58.596 37.037 13.86 0.00 38.26 3.85
3664 3849 7.035840 TGATTAATCGAAGTACAGTACTCCC 57.964 40.000 13.86 8.10 38.26 4.30
3665 3850 6.832384 TGATTAATCGAAGTACAGTACTCCCT 59.168 38.462 13.86 0.00 38.26 4.20
3666 3851 6.690194 TTAATCGAAGTACAGTACTCCCTC 57.310 41.667 13.86 7.20 38.26 4.30
3667 3852 2.996631 TCGAAGTACAGTACTCCCTCC 58.003 52.381 13.86 1.35 38.26 4.30
3668 3853 2.022934 CGAAGTACAGTACTCCCTCCC 58.977 57.143 13.86 0.00 38.26 4.30
3669 3854 2.356947 CGAAGTACAGTACTCCCTCCCT 60.357 54.545 13.86 0.00 38.26 4.20
3670 3855 3.710724 GAAGTACAGTACTCCCTCCCTT 58.289 50.000 13.86 0.00 38.26 3.95
3671 3856 3.385314 AGTACAGTACTCCCTCCCTTC 57.615 52.381 7.48 0.00 32.47 3.46
3672 3857 2.927685 AGTACAGTACTCCCTCCCTTCT 59.072 50.000 7.48 0.00 32.47 2.85
3673 3858 3.337301 AGTACAGTACTCCCTCCCTTCTT 59.663 47.826 7.48 0.00 32.47 2.52
3674 3859 4.543337 AGTACAGTACTCCCTCCCTTCTTA 59.457 45.833 7.48 0.00 32.47 2.10
3675 3860 4.415224 ACAGTACTCCCTCCCTTCTTAA 57.585 45.455 0.00 0.00 0.00 1.85
3676 3861 4.759953 ACAGTACTCCCTCCCTTCTTAAA 58.240 43.478 0.00 0.00 0.00 1.52
3677 3862 5.351405 ACAGTACTCCCTCCCTTCTTAAAT 58.649 41.667 0.00 0.00 0.00 1.40
3678 3863 6.509386 ACAGTACTCCCTCCCTTCTTAAATA 58.491 40.000 0.00 0.00 0.00 1.40
3679 3864 7.140304 ACAGTACTCCCTCCCTTCTTAAATAT 58.860 38.462 0.00 0.00 0.00 1.28
3680 3865 7.628101 ACAGTACTCCCTCCCTTCTTAAATATT 59.372 37.037 0.00 0.00 0.00 1.28
3681 3866 8.495260 CAGTACTCCCTCCCTTCTTAAATATTT 58.505 37.037 5.89 5.89 0.00 1.40
3682 3867 8.495260 AGTACTCCCTCCCTTCTTAAATATTTG 58.505 37.037 11.05 0.00 0.00 2.32
3683 3868 7.285340 ACTCCCTCCCTTCTTAAATATTTGT 57.715 36.000 11.05 0.00 0.00 2.83
3684 3869 7.347252 ACTCCCTCCCTTCTTAAATATTTGTC 58.653 38.462 11.05 0.00 0.00 3.18
3685 3870 7.184753 ACTCCCTCCCTTCTTAAATATTTGTCT 59.815 37.037 11.05 0.00 0.00 3.41
3686 3871 7.939781 TCCCTCCCTTCTTAAATATTTGTCTT 58.060 34.615 11.05 0.00 0.00 3.01
3687 3872 8.398743 TCCCTCCCTTCTTAAATATTTGTCTTT 58.601 33.333 11.05 0.00 0.00 2.52
3688 3873 9.035890 CCCTCCCTTCTTAAATATTTGTCTTTT 57.964 33.333 11.05 0.00 0.00 2.27
3706 3891 8.900983 TGTCTTTTTAAAGATTTCAAATGGGG 57.099 30.769 8.07 0.00 45.83 4.96
3707 3892 7.443879 TGTCTTTTTAAAGATTTCAAATGGGGC 59.556 33.333 8.07 0.00 45.83 5.80
3708 3893 7.443879 GTCTTTTTAAAGATTTCAAATGGGGCA 59.556 33.333 8.07 0.00 45.83 5.36
3709 3894 7.443879 TCTTTTTAAAGATTTCAAATGGGGCAC 59.556 33.333 0.89 0.00 39.95 5.01
3710 3895 5.815233 TTAAAGATTTCAAATGGGGCACA 57.185 34.783 0.00 0.00 0.00 4.57
3711 3896 4.914177 AAAGATTTCAAATGGGGCACAT 57.086 36.364 0.00 0.00 43.07 3.21
3712 3897 7.487822 TTAAAGATTTCAAATGGGGCACATA 57.512 32.000 0.84 0.00 39.40 2.29
3713 3898 5.343307 AAGATTTCAAATGGGGCACATAC 57.657 39.130 0.84 0.00 39.40 2.39
3714 3899 3.381272 AGATTTCAAATGGGGCACATACG 59.619 43.478 0.84 0.00 39.40 3.06
3715 3900 1.468985 TTCAAATGGGGCACATACGG 58.531 50.000 0.84 0.00 39.40 4.02
3716 3901 0.621082 TCAAATGGGGCACATACGGA 59.379 50.000 0.84 0.00 39.40 4.69
3717 3902 1.214175 TCAAATGGGGCACATACGGAT 59.786 47.619 0.84 0.00 39.40 4.18
3718 3903 1.337703 CAAATGGGGCACATACGGATG 59.662 52.381 5.94 5.94 39.40 3.51
3720 3905 1.429930 ATGGGGCACATACGGATGTA 58.570 50.000 14.23 0.00 44.82 2.29
3721 3906 1.429930 TGGGGCACATACGGATGTAT 58.570 50.000 14.23 0.00 44.82 2.29
3722 3907 2.610873 TGGGGCACATACGGATGTATA 58.389 47.619 14.23 0.00 44.82 1.47
3723 3908 3.178046 TGGGGCACATACGGATGTATAT 58.822 45.455 14.23 0.00 44.82 0.86
3724 3909 4.354662 TGGGGCACATACGGATGTATATA 58.645 43.478 14.23 0.00 44.82 0.86
3725 3910 4.404394 TGGGGCACATACGGATGTATATAG 59.596 45.833 14.23 1.36 44.82 1.31
3726 3911 4.647853 GGGGCACATACGGATGTATATAGA 59.352 45.833 14.23 0.00 44.82 1.98
3727 3912 5.451520 GGGGCACATACGGATGTATATAGAC 60.452 48.000 14.23 2.17 44.82 2.59
3728 3913 5.126545 GGGCACATACGGATGTATATAGACA 59.873 44.000 14.23 2.07 44.82 3.41
3729 3914 6.183360 GGGCACATACGGATGTATATAGACAT 60.183 42.308 14.23 12.70 44.82 3.06
3730 3915 7.013942 GGGCACATACGGATGTATATAGACATA 59.986 40.741 14.23 0.00 44.82 2.29
3731 3916 8.577296 GGCACATACGGATGTATATAGACATAT 58.423 37.037 14.23 5.08 44.82 1.78
3732 3917 9.967346 GCACATACGGATGTATATAGACATATT 57.033 33.333 14.23 3.62 44.82 1.28
3759 3944 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
3760 3945 5.615289 AGTGTAGATTCACTCACTTTGCTT 58.385 37.500 0.00 0.00 44.07 3.91
3761 3946 5.698545 AGTGTAGATTCACTCACTTTGCTTC 59.301 40.000 0.00 0.00 44.07 3.86
3762 3947 4.686091 TGTAGATTCACTCACTTTGCTTCG 59.314 41.667 0.00 0.00 0.00 3.79
3763 3948 3.733337 AGATTCACTCACTTTGCTTCGT 58.267 40.909 0.00 0.00 0.00 3.85
3764 3949 4.883083 AGATTCACTCACTTTGCTTCGTA 58.117 39.130 0.00 0.00 0.00 3.43
3765 3950 5.482908 AGATTCACTCACTTTGCTTCGTAT 58.517 37.500 0.00 0.00 0.00 3.06
3766 3951 4.990543 TTCACTCACTTTGCTTCGTATG 57.009 40.909 0.00 0.00 0.00 2.39
3767 3952 3.990092 TCACTCACTTTGCTTCGTATGT 58.010 40.909 0.00 0.00 0.00 2.29
3768 3953 5.128992 TCACTCACTTTGCTTCGTATGTA 57.871 39.130 0.00 0.00 0.00 2.29
3769 3954 5.161358 TCACTCACTTTGCTTCGTATGTAG 58.839 41.667 0.00 0.00 0.00 2.74
3770 3955 4.923871 CACTCACTTTGCTTCGTATGTAGT 59.076 41.667 0.00 0.00 0.00 2.73
3771 3956 5.061064 CACTCACTTTGCTTCGTATGTAGTC 59.939 44.000 0.00 0.00 0.00 2.59
3772 3957 5.128992 TCACTTTGCTTCGTATGTAGTCA 57.871 39.130 0.00 0.00 0.00 3.41
3773 3958 4.921515 TCACTTTGCTTCGTATGTAGTCAC 59.078 41.667 0.00 0.00 0.00 3.67
3774 3959 4.923871 CACTTTGCTTCGTATGTAGTCACT 59.076 41.667 0.00 0.00 0.00 3.41
3775 3960 5.405571 CACTTTGCTTCGTATGTAGTCACTT 59.594 40.000 0.00 0.00 0.00 3.16
3776 3961 5.405571 ACTTTGCTTCGTATGTAGTCACTTG 59.594 40.000 0.00 0.00 0.00 3.16
3777 3962 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
3778 3963 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
3779 3964 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
3780 3965 6.448852 TGCTTCGTATGTAGTCACTTGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
3781 3966 6.924612 TGCTTCGTATGTAGTCACTTGTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
3782 3967 7.438757 TGCTTCGTATGTAGTCACTTGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
3783 3968 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
3784 3969 9.953825 CTTCGTATGTAGTCACTTGTTAAAATC 57.046 33.333 0.00 0.00 0.00 2.17
3785 3970 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
3786 3971 9.701098 TCGTATGTAGTCACTTGTTAAAATCTT 57.299 29.630 0.00 0.00 0.00 2.40
3814 3999 9.292195 AGAAAAACAAATATTTAGGAACGGAGA 57.708 29.630 0.00 0.00 0.00 3.71
3815 4000 9.556030 GAAAAACAAATATTTAGGAACGGAGAG 57.444 33.333 0.00 0.00 0.00 3.20
3897 4854 1.225855 TGTACCAACAGAAGCGCAAG 58.774 50.000 11.47 0.00 43.44 4.01
3898 4855 1.226746 GTACCAACAGAAGCGCAAGT 58.773 50.000 11.47 0.00 41.68 3.16
3899 4856 1.069906 GTACCAACAGAAGCGCAAGTG 60.070 52.381 11.47 5.68 41.68 3.16
3900 4857 1.370900 CCAACAGAAGCGCAAGTGC 60.371 57.895 11.47 0.00 41.68 4.40
3901 4858 1.356270 CAACAGAAGCGCAAGTGCA 59.644 52.632 11.47 0.00 42.21 4.57
3902 4859 0.039798 CAACAGAAGCGCAAGTGCAT 60.040 50.000 11.47 0.00 42.21 3.96
3903 4860 0.039798 AACAGAAGCGCAAGTGCATG 60.040 50.000 11.47 6.22 42.21 4.06
3905 4862 0.179197 CAGAAGCGCAAGTGCATGAG 60.179 55.000 11.47 0.00 42.21 2.90
3906 4863 0.604780 AGAAGCGCAAGTGCATGAGT 60.605 50.000 11.47 0.00 42.21 3.41
3907 4864 0.179205 GAAGCGCAAGTGCATGAGTC 60.179 55.000 11.47 0.00 42.21 3.36
3908 4865 0.886043 AAGCGCAAGTGCATGAGTCA 60.886 50.000 11.47 0.00 42.21 3.41
3910 4867 1.009078 GCGCAAGTGCATGAGTCATA 58.991 50.000 5.03 0.00 42.21 2.15
3912 4869 2.802247 GCGCAAGTGCATGAGTCATATA 59.198 45.455 5.03 0.00 42.21 0.86
3913 4870 3.363378 GCGCAAGTGCATGAGTCATATAC 60.363 47.826 5.03 7.94 42.21 1.47
3914 4871 4.053983 CGCAAGTGCATGAGTCATATACT 58.946 43.478 5.03 10.09 40.67 2.12
3915 4872 5.588568 GCAAGTGCATGAGTCATATACTC 57.411 43.478 17.13 7.54 46.67 2.59
3916 4873 4.450419 GCAAGTGCATGAGTCATATACTCC 59.550 45.833 17.13 10.56 46.31 3.85
3917 4874 6.536787 GCAAGTGCATGAGTCATATACTCCC 61.537 48.000 17.13 10.32 46.31 4.30
3918 4875 8.638444 GCAAGTGCATGAGTCATATACTCCCT 62.638 46.154 17.13 4.65 46.31 4.20
3919 4876 9.996317 GCAAGTGCATGAGTCATATACTCCCTT 62.996 44.444 17.13 6.68 46.31 3.95
3925 4882 4.832590 AGTCATATACTCCCTTCGTTCG 57.167 45.455 0.00 0.00 30.33 3.95
3926 4883 4.458397 AGTCATATACTCCCTTCGTTCGA 58.542 43.478 0.00 0.00 30.33 3.71
3927 4884 4.885907 AGTCATATACTCCCTTCGTTCGAA 59.114 41.667 7.40 7.40 30.33 3.71
3928 4885 5.359009 AGTCATATACTCCCTTCGTTCGAAA 59.641 40.000 0.00 0.00 30.33 3.46
3929 4886 6.040616 AGTCATATACTCCCTTCGTTCGAAAT 59.959 38.462 0.00 1.89 30.33 2.17
3930 4887 6.700520 GTCATATACTCCCTTCGTTCGAAATT 59.299 38.462 0.00 0.00 0.00 1.82
3931 4888 7.864379 GTCATATACTCCCTTCGTTCGAAATTA 59.136 37.037 0.00 0.00 0.00 1.40
3932 4889 7.864379 TCATATACTCCCTTCGTTCGAAATTAC 59.136 37.037 0.00 0.00 0.00 1.89
3933 4890 4.532314 ACTCCCTTCGTTCGAAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
3934 4891 4.891260 ACTCCCTTCGTTCGAAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
3935 4892 6.029346 ACTCCCTTCGTTCGAAATTACTTA 57.971 37.500 0.00 0.00 0.00 2.24
3936 4893 6.637657 ACTCCCTTCGTTCGAAATTACTTAT 58.362 36.000 0.00 0.00 0.00 1.73
3937 4894 6.755607 ACTCCCTTCGTTCGAAATTACTTATC 59.244 38.462 0.00 0.00 0.00 1.75
3938 4895 6.632909 TCCCTTCGTTCGAAATTACTTATCA 58.367 36.000 0.00 0.00 0.00 2.15
3939 4896 7.270047 TCCCTTCGTTCGAAATTACTTATCAT 58.730 34.615 0.00 0.00 0.00 2.45
3940 4897 7.223971 TCCCTTCGTTCGAAATTACTTATCATG 59.776 37.037 0.00 0.00 0.00 3.07
3941 4898 7.345192 CCTTCGTTCGAAATTACTTATCATGG 58.655 38.462 0.00 0.00 0.00 3.66
3942 4899 7.223971 CCTTCGTTCGAAATTACTTATCATGGA 59.776 37.037 0.00 0.00 0.00 3.41
3943 4900 8.481974 TTCGTTCGAAATTACTTATCATGGAA 57.518 30.769 0.00 0.00 0.00 3.53
3944 4901 8.481974 TCGTTCGAAATTACTTATCATGGAAA 57.518 30.769 0.00 0.00 0.00 3.13
3945 4902 9.104965 TCGTTCGAAATTACTTATCATGGAAAT 57.895 29.630 0.00 0.00 0.00 2.17
3946 4903 9.158364 CGTTCGAAATTACTTATCATGGAAATG 57.842 33.333 0.00 0.00 0.00 2.32
3947 4904 9.450807 GTTCGAAATTACTTATCATGGAAATGG 57.549 33.333 0.00 0.00 0.00 3.16
3948 4905 8.972458 TCGAAATTACTTATCATGGAAATGGA 57.028 30.769 0.00 0.00 0.00 3.41
3949 4906 9.573166 TCGAAATTACTTATCATGGAAATGGAT 57.427 29.630 0.00 0.00 0.00 3.41
3998 4955 9.965902 AAAATACATCTAGATACATCCATTCCC 57.034 33.333 4.54 0.00 0.00 3.97
3999 4956 5.667539 ACATCTAGATACATCCATTCCCG 57.332 43.478 4.54 0.00 0.00 5.14
4000 4957 4.081420 ACATCTAGATACATCCATTCCCGC 60.081 45.833 4.54 0.00 0.00 6.13
4001 4958 2.492088 TCTAGATACATCCATTCCCGCG 59.508 50.000 0.00 0.00 0.00 6.46
4002 4959 1.338107 AGATACATCCATTCCCGCGA 58.662 50.000 8.23 0.00 0.00 5.87
4003 4960 1.000955 AGATACATCCATTCCCGCGAC 59.999 52.381 8.23 0.00 0.00 5.19
4004 4961 0.756294 ATACATCCATTCCCGCGACA 59.244 50.000 8.23 0.00 0.00 4.35
4005 4962 0.537653 TACATCCATTCCCGCGACAA 59.462 50.000 8.23 0.00 0.00 3.18
4006 4963 0.744414 ACATCCATTCCCGCGACAAG 60.744 55.000 8.23 0.00 0.00 3.16
4007 4964 0.744414 CATCCATTCCCGCGACAAGT 60.744 55.000 8.23 0.00 0.00 3.16
4008 4965 0.828022 ATCCATTCCCGCGACAAGTA 59.172 50.000 8.23 0.00 0.00 2.24
4009 4966 0.609151 TCCATTCCCGCGACAAGTAA 59.391 50.000 8.23 0.00 0.00 2.24
4010 4967 1.208535 TCCATTCCCGCGACAAGTAAT 59.791 47.619 8.23 0.00 0.00 1.89
4011 4968 2.014128 CCATTCCCGCGACAAGTAATT 58.986 47.619 8.23 0.00 0.00 1.40
4012 4969 2.031683 CCATTCCCGCGACAAGTAATTC 59.968 50.000 8.23 0.00 0.00 2.17
4013 4970 1.729284 TTCCCGCGACAAGTAATTCC 58.271 50.000 8.23 0.00 0.00 3.01
4014 4971 0.458889 TCCCGCGACAAGTAATTCCG 60.459 55.000 8.23 0.00 0.00 4.30
4015 4972 1.426041 CCCGCGACAAGTAATTCCGG 61.426 60.000 8.23 0.00 0.00 5.14
4016 4973 0.458889 CCGCGACAAGTAATTCCGGA 60.459 55.000 8.23 0.00 36.55 5.14
4017 4974 0.643820 CGCGACAAGTAATTCCGGAC 59.356 55.000 1.83 0.00 0.00 4.79
4018 4975 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
4019 4976 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4020 4977 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4021 4978 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4022 4979 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4023 4980 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4024 4981 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
4025 4982 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4026 4983 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
4027 4984 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4028 4985 0.187851 ATTCCGGACGGAGGGAGTAT 59.812 55.000 13.64 0.61 46.06 2.12
4029 4986 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
4030 4987 1.070604 TCCGGACGGAGGGAGTATAT 58.929 55.000 9.76 0.00 39.76 0.86
4031 4988 2.269023 TCCGGACGGAGGGAGTATATA 58.731 52.381 9.76 0.00 39.76 0.86
4067 5024 6.600427 TGAACCTATAGATTACACACTCGACA 59.400 38.462 0.00 0.00 0.00 4.35
4104 5061 7.992033 TGTTTTGGATTTGGATGTGAATCTTTT 59.008 29.630 0.00 0.00 33.75 2.27
4105 5062 8.839343 GTTTTGGATTTGGATGTGAATCTTTTT 58.161 29.630 0.00 0.00 33.75 1.94
4178 5135 6.879367 TGGGCCTACATAGTACTAAAGTTT 57.121 37.500 6.70 0.00 0.00 2.66
4183 5140 6.413235 GCCTACATAGTACTAAAGTTTCGTCG 59.587 42.308 6.70 0.00 0.00 5.12
4193 5150 6.661669 ACTAAAGTTTCGTCGGTTAATTTGG 58.338 36.000 0.00 0.00 0.00 3.28
4196 5153 5.952526 AGTTTCGTCGGTTAATTTGGATT 57.047 34.783 0.00 0.00 0.00 3.01
4200 5157 4.325119 TCGTCGGTTAATTTGGATTGGAA 58.675 39.130 0.00 0.00 0.00 3.53
4207 5164 7.120138 TCGGTTAATTTGGATTGGAAAGAGTAC 59.880 37.037 0.00 0.00 0.00 2.73
4219 5176 9.847224 GATTGGAAAGAGTACAATAATTAGGGA 57.153 33.333 0.00 0.00 35.17 4.20
4223 5180 9.286170 GGAAAGAGTACAATAATTAGGGATTCC 57.714 37.037 0.00 0.00 0.00 3.01
4224 5181 9.847224 GAAAGAGTACAATAATTAGGGATTCCA 57.153 33.333 4.80 0.00 34.83 3.53
4238 5195 5.831103 AGGGATTCCAGACACAATAAACAT 58.169 37.500 4.80 0.00 34.83 2.71
4241 5198 7.557719 AGGGATTCCAGACACAATAAACATTAG 59.442 37.037 4.80 0.00 34.83 1.73
4244 5201 9.167311 GATTCCAGACACAATAAACATTAGTCT 57.833 33.333 0.00 0.00 35.44 3.24
4285 5243 9.825972 ATAAAAAGTCACACTGTCAAATTATCG 57.174 29.630 0.00 0.00 0.00 2.92
4297 5255 4.068599 TCAAATTATCGGTTGAGTGTGCA 58.931 39.130 0.00 0.00 30.41 4.57
4310 5268 3.846754 GTGCAAAACCTCATGCGC 58.153 55.556 0.00 0.00 45.47 6.09
4322 5280 0.108662 TCATGCGCGTGATCTTGAGT 60.109 50.000 27.87 0.00 0.00 3.41
4327 5285 1.891178 CGCGTGATCTTGAGTAACGA 58.109 50.000 0.00 0.00 36.38 3.85
4328 5286 1.840741 CGCGTGATCTTGAGTAACGAG 59.159 52.381 0.00 0.00 36.38 4.18
4329 5287 2.728225 CGCGTGATCTTGAGTAACGAGT 60.728 50.000 0.00 0.00 36.38 4.18
4357 5315 0.039798 GCACGACTACAACTCCGACA 60.040 55.000 0.00 0.00 0.00 4.35
4363 5321 1.346395 ACTACAACTCCGACATGCCAA 59.654 47.619 0.00 0.00 0.00 4.52
4364 5322 2.224426 ACTACAACTCCGACATGCCAAA 60.224 45.455 0.00 0.00 0.00 3.28
4366 5324 2.238521 ACAACTCCGACATGCCAAATT 58.761 42.857 0.00 0.00 0.00 1.82
4460 5419 8.406297 GGAGTTTAGGGTTCATGATTTATGTTC 58.594 37.037 0.00 0.00 38.01 3.18
4465 5424 5.044179 AGGGTTCATGATTTATGTTCCAGGA 60.044 40.000 0.00 0.00 38.01 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.109128 TCTGGGGTAAATTGCAAGGTCA 59.891 45.455 4.94 0.00 0.00 4.02
15 16 3.604582 GAGTTTCTGATCTTGTCTGGGG 58.395 50.000 0.00 0.00 0.00 4.96
66 67 5.561679 AGATGATCAGCGTACTAGATACCA 58.438 41.667 5.12 0.00 0.00 3.25
75 76 3.435566 TGAACGAAGATGATCAGCGTAC 58.564 45.455 5.12 0.48 34.46 3.67
76 77 3.775661 TGAACGAAGATGATCAGCGTA 57.224 42.857 5.12 0.00 34.46 4.42
84 85 4.996758 TCTTGCAGAATTGAACGAAGATGA 59.003 37.500 0.00 0.00 0.00 2.92
117 118 3.558931 ATGGCATCACGGACTAATTGA 57.441 42.857 0.00 0.00 0.00 2.57
119 120 4.415881 TGTATGGCATCACGGACTAATT 57.584 40.909 1.65 0.00 0.00 1.40
165 166 6.371548 GGTTAGTTTGATCTACTGCATGTTGA 59.628 38.462 10.23 0.00 35.14 3.18
199 200 2.224066 GCCGGTAAGCATACTCTGACAT 60.224 50.000 1.90 0.00 32.36 3.06
304 305 2.617538 AGGACGAGGAGGAGGGGA 60.618 66.667 0.00 0.00 0.00 4.81
306 307 3.151022 GCAGGACGAGGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
317 318 2.142292 AATCTGGTGGGGTGCAGGAC 62.142 60.000 0.00 0.00 0.00 3.85
325 335 0.106519 GATGGTGGAATCTGGTGGGG 60.107 60.000 0.00 0.00 0.00 4.96
362 372 2.345991 CAGGGGAGTTTCGGCGAA 59.654 61.111 19.83 19.83 0.00 4.70
499 509 2.820728 TCCACAGATTCGAGTAGGGA 57.179 50.000 0.00 0.00 0.00 4.20
522 532 2.783288 CGACTAACCTCTCCGCCCC 61.783 68.421 0.00 0.00 0.00 5.80
673 696 1.227664 CCTAGAGCCTCCGTCTCCA 59.772 63.158 0.00 0.00 0.00 3.86
767 790 3.878667 CCTCCCAATCGGCTCCCC 61.879 72.222 0.00 0.00 0.00 4.81
1203 1259 7.771927 AATCATCAAGAACAAGTGGAAATCT 57.228 32.000 0.00 0.00 0.00 2.40
1244 1301 1.437986 GCTCTTCGCCTATCGGTGT 59.562 57.895 0.00 0.00 41.65 4.16
1324 1381 2.488355 GCGATCAGGTTCCGACGA 59.512 61.111 0.00 0.00 0.00 4.20
1344 1401 0.679321 CCTGCTTGCCTTCCTTCTCC 60.679 60.000 0.00 0.00 0.00 3.71
1355 1412 1.069227 CGGTTTCAGTTACCTGCTTGC 60.069 52.381 0.00 0.00 38.66 4.01
1379 1455 6.536582 TGGAATTCGATGAAGACAAGAGAATC 59.463 38.462 0.00 0.00 32.04 2.52
1386 1462 3.926527 CGACTGGAATTCGATGAAGACAA 59.073 43.478 0.00 0.00 38.85 3.18
1387 1463 3.192633 TCGACTGGAATTCGATGAAGACA 59.807 43.478 0.00 0.00 40.51 3.41
1410 1486 4.559906 ATCGATACGGATCGGTTATTTGCA 60.560 41.667 28.78 7.46 46.94 4.08
1417 1493 2.100252 ACAACATCGATACGGATCGGTT 59.900 45.455 28.78 21.81 46.94 4.44
1437 1517 2.174319 GCCGGCTTCTTGGATCGAC 61.174 63.158 22.15 0.00 0.00 4.20
1597 1677 2.743928 GACTTGGCCTCCACAGCG 60.744 66.667 3.32 0.00 30.78 5.18
1621 1701 1.154836 GTTTTGCTCGCTCGTCGTG 60.155 57.895 0.00 0.00 39.67 4.35
1812 1895 0.884514 GCCTCCCAAGAGAAACAAGC 59.115 55.000 0.00 0.00 43.39 4.01
1824 1907 2.925966 ATTCAGATTTTGGCCTCCCA 57.074 45.000 3.32 0.00 40.06 4.37
1850 1933 6.554334 TTCTTTTATCCTTGAACGTTCAGG 57.446 37.500 28.09 28.09 38.61 3.86
1856 1939 6.090763 GCCCAATTTTCTTTTATCCTTGAACG 59.909 38.462 0.00 0.00 0.00 3.95
1860 1943 5.803552 TGGCCCAATTTTCTTTTATCCTTG 58.196 37.500 0.00 0.00 0.00 3.61
1863 1946 4.576053 GCATGGCCCAATTTTCTTTTATCC 59.424 41.667 0.00 0.00 0.00 2.59
1864 1947 5.430886 AGCATGGCCCAATTTTCTTTTATC 58.569 37.500 0.00 0.00 0.00 1.75
1865 1948 5.045724 TGAGCATGGCCCAATTTTCTTTTAT 60.046 36.000 0.00 0.00 0.00 1.40
1866 1949 4.285517 TGAGCATGGCCCAATTTTCTTTTA 59.714 37.500 0.00 0.00 0.00 1.52
1868 1951 2.638855 TGAGCATGGCCCAATTTTCTTT 59.361 40.909 0.00 0.00 0.00 2.52
1870 1953 1.829222 CTGAGCATGGCCCAATTTTCT 59.171 47.619 0.00 0.00 0.00 2.52
1871 1954 1.741394 GCTGAGCATGGCCCAATTTTC 60.741 52.381 0.00 0.00 0.00 2.29
1872 1955 0.251073 GCTGAGCATGGCCCAATTTT 59.749 50.000 0.00 0.00 0.00 1.82
1873 1956 0.905809 TGCTGAGCATGGCCCAATTT 60.906 50.000 1.40 0.00 31.71 1.82
1874 1957 1.305465 TGCTGAGCATGGCCCAATT 60.305 52.632 1.40 0.00 31.71 2.32
1875 1958 1.756950 CTGCTGAGCATGGCCCAAT 60.757 57.895 7.94 0.00 38.13 3.16
1876 1959 2.361992 CTGCTGAGCATGGCCCAA 60.362 61.111 7.94 0.00 38.13 4.12
1877 1960 2.909549 TTCTGCTGAGCATGGCCCA 61.910 57.895 7.94 0.00 38.13 5.36
1878 1961 2.044650 TTCTGCTGAGCATGGCCC 60.045 61.111 7.94 0.00 38.13 5.80
1879 1962 1.375098 GAGTTCTGCTGAGCATGGCC 61.375 60.000 7.94 0.00 38.13 5.36
1880 1963 0.675837 TGAGTTCTGCTGAGCATGGC 60.676 55.000 7.94 0.52 38.13 4.40
1881 1964 1.738350 CTTGAGTTCTGCTGAGCATGG 59.262 52.381 7.94 0.00 38.13 3.66
1882 1965 1.738350 CCTTGAGTTCTGCTGAGCATG 59.262 52.381 7.94 2.29 38.13 4.06
1883 1966 1.627329 TCCTTGAGTTCTGCTGAGCAT 59.373 47.619 7.94 0.00 38.13 3.79
1884 1967 1.051008 TCCTTGAGTTCTGCTGAGCA 58.949 50.000 7.05 7.05 36.92 4.26
1885 1968 2.075338 CTTCCTTGAGTTCTGCTGAGC 58.925 52.381 0.00 0.00 0.00 4.26
1886 1969 3.674528 TCTTCCTTGAGTTCTGCTGAG 57.325 47.619 0.00 0.00 0.00 3.35
1887 1970 3.580022 TCATCTTCCTTGAGTTCTGCTGA 59.420 43.478 0.00 0.00 0.00 4.26
1888 1971 3.935315 TCATCTTCCTTGAGTTCTGCTG 58.065 45.455 0.00 0.00 0.00 4.41
1889 1972 4.630644 TTCATCTTCCTTGAGTTCTGCT 57.369 40.909 0.00 0.00 0.00 4.24
1890 1973 4.999950 TCTTTCATCTTCCTTGAGTTCTGC 59.000 41.667 0.00 0.00 0.00 4.26
1891 1974 7.684937 AATCTTTCATCTTCCTTGAGTTCTG 57.315 36.000 0.00 0.00 0.00 3.02
1892 1975 7.309073 GCAAATCTTTCATCTTCCTTGAGTTCT 60.309 37.037 0.00 0.00 0.00 3.01
1893 1976 6.805760 GCAAATCTTTCATCTTCCTTGAGTTC 59.194 38.462 0.00 0.00 0.00 3.01
1894 1977 6.266103 TGCAAATCTTTCATCTTCCTTGAGTT 59.734 34.615 0.00 0.00 0.00 3.01
1895 1978 5.771666 TGCAAATCTTTCATCTTCCTTGAGT 59.228 36.000 0.00 0.00 0.00 3.41
1896 1979 6.263516 TGCAAATCTTTCATCTTCCTTGAG 57.736 37.500 0.00 0.00 0.00 3.02
1897 1980 6.434965 TCATGCAAATCTTTCATCTTCCTTGA 59.565 34.615 0.00 0.00 0.00 3.02
1898 1981 6.627243 TCATGCAAATCTTTCATCTTCCTTG 58.373 36.000 0.00 0.00 0.00 3.61
1899 1982 6.845758 TCATGCAAATCTTTCATCTTCCTT 57.154 33.333 0.00 0.00 0.00 3.36
1900 1983 6.605995 TGATCATGCAAATCTTTCATCTTCCT 59.394 34.615 12.19 0.00 0.00 3.36
1908 1991 6.748658 TCGAAATGTGATCATGCAAATCTTTC 59.251 34.615 0.00 11.86 34.19 2.62
2115 2198 0.247736 CCCTCCTGGCGTATATCTGC 59.752 60.000 0.00 0.00 0.00 4.26
2280 2462 0.392193 CTGGTGAGTGTGATCCCAGC 60.392 60.000 0.00 0.00 36.58 4.85
2371 2553 2.032620 ACCTGGTGAGATAAGGCGTAG 58.967 52.381 0.00 0.00 34.18 3.51
2380 2562 1.384989 CGACGGCTACCTGGTGAGAT 61.385 60.000 10.23 0.00 0.00 2.75
2396 2578 2.398498 CATCGACAATGGAGATCCGAC 58.602 52.381 0.00 0.00 39.43 4.79
2419 2601 2.658707 GAACACGTCGAGCCACAGC 61.659 63.158 0.00 0.00 40.32 4.40
2463 2645 3.121030 GCAACCGAGACAGCGCAT 61.121 61.111 11.47 0.00 0.00 4.73
2466 2648 2.356313 ACTGCAACCGAGACAGCG 60.356 61.111 0.00 0.00 34.72 5.18
2500 2682 2.501723 CCCCGAGGAAGATGAAGAAGAA 59.498 50.000 0.00 0.00 33.47 2.52
2522 2704 1.606601 TGGGTGTCACTCTCCCTCG 60.607 63.158 4.09 0.00 46.71 4.63
2557 2739 1.303317 GCCAGGGTCCATGAACGTT 60.303 57.895 4.74 0.00 0.00 3.99
2722 2904 1.983224 CGTGGTGGGAATCTGGACT 59.017 57.895 0.00 0.00 0.00 3.85
2859 3041 1.683441 CCTTTGAACGGGCTACCCT 59.317 57.895 0.32 0.00 42.67 4.34
2875 3057 3.011517 AGCATGCTTCCCGACCCT 61.012 61.111 16.30 0.00 0.00 4.34
2876 3058 2.825836 CAGCATGCTTCCCGACCC 60.826 66.667 19.98 0.00 0.00 4.46
2877 3059 2.045926 ACAGCATGCTTCCCGACC 60.046 61.111 19.98 0.00 42.53 4.79
2953 3135 2.284258 AGCGAGGCCTCCTTGTCT 60.284 61.111 27.20 12.88 37.36 3.41
3008 3190 2.680352 TCGTGGACTCAGCCTCCC 60.680 66.667 0.00 0.00 0.00 4.30
3012 3194 3.691744 CTCGCTCGTGGACTCAGCC 62.692 68.421 0.00 0.00 0.00 4.85
3019 3201 1.745864 GACCTCTCTCGCTCGTGGA 60.746 63.158 0.00 0.00 0.00 4.02
3021 3203 2.101233 TCGACCTCTCTCGCTCGTG 61.101 63.158 0.00 0.00 33.47 4.35
3022 3204 2.101835 GTCGACCTCTCTCGCTCGT 61.102 63.158 3.51 0.00 33.47 4.18
3023 3205 2.704616 GTCGACCTCTCTCGCTCG 59.295 66.667 3.51 0.00 33.47 5.03
3026 3208 3.726631 CTGCGTCGACCTCTCTCGC 62.727 68.421 10.58 8.73 45.70 5.03
3136 3318 3.706373 GGGAGCTCGGCCTTGTCA 61.706 66.667 7.83 0.00 0.00 3.58
3164 3346 3.374402 CGGCGAGGACACCAGAGT 61.374 66.667 0.00 0.00 0.00 3.24
3204 3386 0.105224 TTGTTTCTCCGCGAACTCCA 59.895 50.000 8.23 0.00 0.00 3.86
3278 3460 1.590259 GCTTCGTCCTGATCTCCGC 60.590 63.158 0.00 0.00 0.00 5.54
3325 3507 0.249699 CGTGGATATACGCAAGCCCA 60.250 55.000 0.00 0.00 45.62 5.36
3353 3535 5.758570 AAGAAAAACTCGTACAGTATCGC 57.241 39.130 0.00 0.00 32.30 4.58
3364 3547 7.860872 ACTAGGCAACAAAATAAGAAAAACTCG 59.139 33.333 0.00 0.00 41.41 4.18
3368 3551 9.026074 CGAAACTAGGCAACAAAATAAGAAAAA 57.974 29.630 0.00 0.00 41.41 1.94
3399 3582 5.813080 ATGACCAAAAACGCTAGATTACC 57.187 39.130 0.00 0.00 0.00 2.85
3431 3614 4.784045 CGAACGCGCTAATTACAAATTCAA 59.216 37.500 5.73 0.00 0.00 2.69
3432 3615 4.327845 CGAACGCGCTAATTACAAATTCA 58.672 39.130 5.73 0.00 0.00 2.57
3433 3616 3.717404 CCGAACGCGCTAATTACAAATTC 59.283 43.478 5.73 0.00 35.83 2.17
3435 3618 2.674357 ACCGAACGCGCTAATTACAAAT 59.326 40.909 5.73 0.00 35.83 2.32
3438 3621 2.184448 GTACCGAACGCGCTAATTACA 58.816 47.619 5.73 0.00 35.83 2.41
3439 3622 2.184448 TGTACCGAACGCGCTAATTAC 58.816 47.619 5.73 3.26 35.83 1.89
3440 3623 2.558265 TGTACCGAACGCGCTAATTA 57.442 45.000 5.73 0.00 35.83 1.40
3468 3651 2.034053 CCAGCGTTAGCCAAACTCAAAA 59.966 45.455 0.00 0.00 46.67 2.44
3472 3655 0.796927 GACCAGCGTTAGCCAAACTC 59.203 55.000 0.00 0.00 46.67 3.01
3473 3656 0.396811 AGACCAGCGTTAGCCAAACT 59.603 50.000 0.00 0.00 46.67 2.66
3474 3657 2.088950 TAGACCAGCGTTAGCCAAAC 57.911 50.000 0.00 0.00 46.67 2.93
3475 3658 2.843401 TTAGACCAGCGTTAGCCAAA 57.157 45.000 0.00 0.00 46.67 3.28
3515 3698 9.918630 AGCATGCATTTTAAATAATACTCCATC 57.081 29.630 21.98 0.00 0.00 3.51
3603 3787 1.623811 ACATCTAAGGTGAACAGCGGT 59.376 47.619 0.00 0.00 0.00 5.68
3611 3795 1.751351 CGGCAGAGACATCTAAGGTGA 59.249 52.381 0.00 0.00 33.22 4.02
3655 3840 5.959583 ATTTAAGAAGGGAGGGAGTACTG 57.040 43.478 0.00 0.00 0.00 2.74
3656 3841 8.495260 CAAATATTTAAGAAGGGAGGGAGTACT 58.505 37.037 0.00 0.00 0.00 2.73
3657 3842 8.272889 ACAAATATTTAAGAAGGGAGGGAGTAC 58.727 37.037 0.00 0.00 0.00 2.73
3658 3843 8.401955 ACAAATATTTAAGAAGGGAGGGAGTA 57.598 34.615 0.00 0.00 0.00 2.59
3659 3844 7.184753 AGACAAATATTTAAGAAGGGAGGGAGT 59.815 37.037 0.00 0.00 0.00 3.85
3660 3845 7.578203 AGACAAATATTTAAGAAGGGAGGGAG 58.422 38.462 0.00 0.00 0.00 4.30
3661 3846 7.525158 AGACAAATATTTAAGAAGGGAGGGA 57.475 36.000 0.00 0.00 0.00 4.20
3662 3847 8.595362 AAAGACAAATATTTAAGAAGGGAGGG 57.405 34.615 0.00 0.00 0.00 4.30
3680 3865 9.336171 CCCCATTTGAAATCTTTAAAAAGACAA 57.664 29.630 7.29 5.36 46.80 3.18
3681 3866 7.443879 GCCCCATTTGAAATCTTTAAAAAGACA 59.556 33.333 7.29 0.00 46.80 3.41
3682 3867 7.443879 TGCCCCATTTGAAATCTTTAAAAAGAC 59.556 33.333 7.29 0.00 46.80 3.01
3684 3869 7.228308 TGTGCCCCATTTGAAATCTTTAAAAAG 59.772 33.333 0.00 0.00 37.36 2.27
3685 3870 7.056635 TGTGCCCCATTTGAAATCTTTAAAAA 58.943 30.769 0.00 0.00 0.00 1.94
3686 3871 6.595682 TGTGCCCCATTTGAAATCTTTAAAA 58.404 32.000 0.00 0.00 0.00 1.52
3687 3872 6.179906 TGTGCCCCATTTGAAATCTTTAAA 57.820 33.333 0.00 0.00 0.00 1.52
3688 3873 5.815233 TGTGCCCCATTTGAAATCTTTAA 57.185 34.783 0.00 0.00 0.00 1.52
3689 3874 6.405286 CGTATGTGCCCCATTTGAAATCTTTA 60.405 38.462 0.00 0.00 34.86 1.85
3690 3875 4.914177 ATGTGCCCCATTTGAAATCTTT 57.086 36.364 0.00 0.00 0.00 2.52
3691 3876 4.142182 CGTATGTGCCCCATTTGAAATCTT 60.142 41.667 0.00 0.00 34.86 2.40
3692 3877 3.381272 CGTATGTGCCCCATTTGAAATCT 59.619 43.478 0.00 0.00 34.86 2.40
3693 3878 3.490761 CCGTATGTGCCCCATTTGAAATC 60.491 47.826 0.00 0.00 34.86 2.17
3694 3879 2.430332 CCGTATGTGCCCCATTTGAAAT 59.570 45.455 0.00 0.00 34.86 2.17
3695 3880 1.821753 CCGTATGTGCCCCATTTGAAA 59.178 47.619 0.00 0.00 34.86 2.69
3696 3881 1.004862 TCCGTATGTGCCCCATTTGAA 59.995 47.619 0.00 0.00 34.86 2.69
3697 3882 0.621082 TCCGTATGTGCCCCATTTGA 59.379 50.000 0.00 0.00 34.86 2.69
3698 3883 1.337703 CATCCGTATGTGCCCCATTTG 59.662 52.381 0.00 0.00 34.86 2.32
3699 3884 1.064017 ACATCCGTATGTGCCCCATTT 60.064 47.619 0.00 0.00 44.79 2.32
3700 3885 0.550914 ACATCCGTATGTGCCCCATT 59.449 50.000 0.00 0.00 44.79 3.16
3701 3886 1.429930 TACATCCGTATGTGCCCCAT 58.570 50.000 3.56 0.00 45.99 4.00
3702 3887 1.429930 ATACATCCGTATGTGCCCCA 58.570 50.000 3.56 0.00 45.99 4.96
3703 3888 3.906720 ATATACATCCGTATGTGCCCC 57.093 47.619 3.56 0.00 45.99 5.80
3704 3889 5.126545 TGTCTATATACATCCGTATGTGCCC 59.873 44.000 3.56 0.00 45.99 5.36
3705 3890 6.203808 TGTCTATATACATCCGTATGTGCC 57.796 41.667 3.56 0.00 45.99 5.01
3706 3891 9.967346 AATATGTCTATATACATCCGTATGTGC 57.033 33.333 3.56 0.00 45.99 4.57
3738 3923 5.388890 CGAAGCAAAGTGAGTGAATCTACAC 60.389 44.000 0.00 0.00 40.60 2.90
3739 3924 4.686091 CGAAGCAAAGTGAGTGAATCTACA 59.314 41.667 0.00 0.00 0.00 2.74
3740 3925 4.686554 ACGAAGCAAAGTGAGTGAATCTAC 59.313 41.667 0.00 0.00 0.00 2.59
3741 3926 4.883083 ACGAAGCAAAGTGAGTGAATCTA 58.117 39.130 0.00 0.00 0.00 1.98
3742 3927 3.733337 ACGAAGCAAAGTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
3743 3928 5.120830 ACATACGAAGCAAAGTGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
3744 3929 4.997395 ACATACGAAGCAAAGTGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
3745 3930 4.377021 ACATACGAAGCAAAGTGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
3746 3931 3.990092 ACATACGAAGCAAAGTGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
3747 3932 4.923871 ACTACATACGAAGCAAAGTGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
3748 3933 5.135508 ACTACATACGAAGCAAAGTGAGT 57.864 39.130 0.00 0.00 0.00 3.41
3749 3934 5.061064 GTGACTACATACGAAGCAAAGTGAG 59.939 44.000 0.00 0.00 0.00 3.51
3750 3935 4.921515 GTGACTACATACGAAGCAAAGTGA 59.078 41.667 0.00 0.00 0.00 3.41
3751 3936 4.923871 AGTGACTACATACGAAGCAAAGTG 59.076 41.667 0.00 0.00 0.00 3.16
3752 3937 5.135508 AGTGACTACATACGAAGCAAAGT 57.864 39.130 0.00 0.00 0.00 2.66
3753 3938 5.405571 ACAAGTGACTACATACGAAGCAAAG 59.594 40.000 0.00 0.00 0.00 2.77
3754 3939 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
3755 3940 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
3756 3941 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
3757 3942 6.939551 TTAACAAGTGACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
3758 3943 9.953825 GATTTTAACAAGTGACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
3759 3944 9.701098 AGATTTTAACAAGTGACTACATACGAA 57.299 29.630 0.00 0.00 0.00 3.85
3760 3945 9.701098 AAGATTTTAACAAGTGACTACATACGA 57.299 29.630 0.00 0.00 0.00 3.43
3788 3973 9.292195 TCTCCGTTCCTAAATATTTGTTTTTCT 57.708 29.630 11.05 0.00 0.00 2.52
3789 3974 9.556030 CTCTCCGTTCCTAAATATTTGTTTTTC 57.444 33.333 11.05 0.00 0.00 2.29
3790 3975 9.292195 TCTCTCCGTTCCTAAATATTTGTTTTT 57.708 29.630 11.05 0.00 0.00 1.94
3791 3976 8.857694 TCTCTCCGTTCCTAAATATTTGTTTT 57.142 30.769 11.05 0.00 0.00 2.43
3792 3977 8.101419 ACTCTCTCCGTTCCTAAATATTTGTTT 58.899 33.333 11.05 0.00 0.00 2.83
3793 3978 7.621796 ACTCTCTCCGTTCCTAAATATTTGTT 58.378 34.615 11.05 0.00 0.00 2.83
3794 3979 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
3795 3980 9.765795 AATACTCTCTCCGTTCCTAAATATTTG 57.234 33.333 11.05 1.40 0.00 2.32
3800 3985 9.810870 AGTATAATACTCTCTCCGTTCCTAAAT 57.189 33.333 0.00 0.00 32.47 1.40
3802 3987 9.717942 GTAGTATAATACTCTCTCCGTTCCTAA 57.282 37.037 3.12 0.00 40.14 2.69
3803 3988 9.099071 AGTAGTATAATACTCTCTCCGTTCCTA 57.901 37.037 7.04 0.00 40.14 2.94
3804 3989 7.976712 AGTAGTATAATACTCTCTCCGTTCCT 58.023 38.462 7.04 0.00 40.14 3.36
3805 3990 9.889128 ATAGTAGTATAATACTCTCTCCGTTCC 57.111 37.037 15.70 0.00 40.14 3.62
3888 4845 0.179205 GACTCATGCACTTGCGCTTC 60.179 55.000 9.73 0.00 45.83 3.86
3902 4859 8.759779 TTTCGAACGAAGGGAGTATATGACTCA 61.760 40.741 9.46 0.00 44.40 3.41
3903 4860 6.459298 TTTCGAACGAAGGGAGTATATGACTC 60.459 42.308 9.46 1.82 43.22 3.36
3905 4862 4.825546 TCGAACGAAGGGAGTATATGAC 57.174 45.455 0.00 0.00 0.00 3.06
3906 4863 5.840243 TTTCGAACGAAGGGAGTATATGA 57.160 39.130 9.46 0.00 35.38 2.15
3907 4864 7.866393 AGTAATTTCGAACGAAGGGAGTATATG 59.134 37.037 9.46 0.00 35.38 1.78
3908 4865 7.949434 AGTAATTTCGAACGAAGGGAGTATAT 58.051 34.615 9.46 0.00 35.38 0.86
3910 4867 6.218108 AGTAATTTCGAACGAAGGGAGTAT 57.782 37.500 9.46 0.00 35.38 2.12
3912 4869 4.532314 AGTAATTTCGAACGAAGGGAGT 57.468 40.909 9.46 0.00 35.38 3.85
3913 4870 6.755141 TGATAAGTAATTTCGAACGAAGGGAG 59.245 38.462 9.46 0.00 35.38 4.30
3914 4871 6.632909 TGATAAGTAATTTCGAACGAAGGGA 58.367 36.000 9.46 0.00 35.38 4.20
3915 4872 6.897259 TGATAAGTAATTTCGAACGAAGGG 57.103 37.500 9.46 0.00 35.38 3.95
3916 4873 7.223971 TCCATGATAAGTAATTTCGAACGAAGG 59.776 37.037 9.46 3.88 35.38 3.46
3917 4874 8.126871 TCCATGATAAGTAATTTCGAACGAAG 57.873 34.615 9.46 0.00 35.38 3.79
3918 4875 8.481974 TTCCATGATAAGTAATTTCGAACGAA 57.518 30.769 0.00 5.53 0.00 3.85
3919 4876 8.481974 TTTCCATGATAAGTAATTTCGAACGA 57.518 30.769 0.00 0.00 0.00 3.85
3920 4877 9.158364 CATTTCCATGATAAGTAATTTCGAACG 57.842 33.333 0.00 0.00 31.07 3.95
3921 4878 9.450807 CCATTTCCATGATAAGTAATTTCGAAC 57.549 33.333 0.00 0.00 31.07 3.95
3922 4879 9.402320 TCCATTTCCATGATAAGTAATTTCGAA 57.598 29.630 0.00 0.00 31.07 3.71
3923 4880 8.972458 TCCATTTCCATGATAAGTAATTTCGA 57.028 30.769 0.00 0.00 31.07 3.71
3972 4929 9.965902 GGGAATGGATGTATCTAGATGTATTTT 57.034 33.333 15.79 5.41 0.00 1.82
3973 4930 8.260818 CGGGAATGGATGTATCTAGATGTATTT 58.739 37.037 15.79 1.74 0.00 1.40
3974 4931 7.633772 GCGGGAATGGATGTATCTAGATGTATT 60.634 40.741 15.79 6.57 0.00 1.89
3975 4932 6.183360 GCGGGAATGGATGTATCTAGATGTAT 60.183 42.308 15.79 9.11 0.00 2.29
3976 4933 5.127194 GCGGGAATGGATGTATCTAGATGTA 59.873 44.000 15.79 4.44 0.00 2.29
3977 4934 4.081420 GCGGGAATGGATGTATCTAGATGT 60.081 45.833 15.79 1.25 0.00 3.06
3978 4935 4.437239 GCGGGAATGGATGTATCTAGATG 58.563 47.826 15.79 0.00 0.00 2.90
3979 4936 3.131223 CGCGGGAATGGATGTATCTAGAT 59.869 47.826 10.73 10.73 0.00 1.98
3980 4937 2.492088 CGCGGGAATGGATGTATCTAGA 59.508 50.000 0.00 0.00 0.00 2.43
3981 4938 2.492088 TCGCGGGAATGGATGTATCTAG 59.508 50.000 6.13 0.00 0.00 2.43
3982 4939 2.230508 GTCGCGGGAATGGATGTATCTA 59.769 50.000 6.13 0.00 0.00 1.98
3983 4940 1.000955 GTCGCGGGAATGGATGTATCT 59.999 52.381 6.13 0.00 0.00 1.98
3984 4941 1.270094 TGTCGCGGGAATGGATGTATC 60.270 52.381 6.13 0.00 0.00 2.24
3985 4942 0.756294 TGTCGCGGGAATGGATGTAT 59.244 50.000 6.13 0.00 0.00 2.29
3986 4943 0.537653 TTGTCGCGGGAATGGATGTA 59.462 50.000 6.13 0.00 0.00 2.29
3987 4944 0.744414 CTTGTCGCGGGAATGGATGT 60.744 55.000 6.13 0.00 0.00 3.06
3988 4945 0.744414 ACTTGTCGCGGGAATGGATG 60.744 55.000 6.13 0.00 0.00 3.51
3989 4946 0.828022 TACTTGTCGCGGGAATGGAT 59.172 50.000 6.13 0.00 0.00 3.41
3990 4947 0.609151 TTACTTGTCGCGGGAATGGA 59.391 50.000 6.13 0.00 0.00 3.41
3991 4948 1.663695 ATTACTTGTCGCGGGAATGG 58.336 50.000 6.13 0.00 0.00 3.16
3992 4949 2.031683 GGAATTACTTGTCGCGGGAATG 59.968 50.000 6.13 0.00 0.00 2.67
3993 4950 2.285977 GGAATTACTTGTCGCGGGAAT 58.714 47.619 6.13 0.00 0.00 3.01
3994 4951 1.729284 GGAATTACTTGTCGCGGGAA 58.271 50.000 6.13 0.00 0.00 3.97
3995 4952 0.458889 CGGAATTACTTGTCGCGGGA 60.459 55.000 6.13 0.00 0.00 5.14
3996 4953 1.426041 CCGGAATTACTTGTCGCGGG 61.426 60.000 6.13 0.00 0.00 6.13
3997 4954 0.458889 TCCGGAATTACTTGTCGCGG 60.459 55.000 6.13 0.00 0.00 6.46
3998 4955 0.643820 GTCCGGAATTACTTGTCGCG 59.356 55.000 5.23 0.00 0.00 5.87
3999 4956 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
4000 4957 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4001 4958 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4002 4959 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4003 4960 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4004 4961 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
4005 4962 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
4006 4963 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
4007 4964 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
4008 4965 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
4009 4966 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
4010 4967 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
4011 4968 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
4012 4969 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
4013 4970 3.878103 CTCATATATACTCCCTCCGTCCG 59.122 52.174 0.00 0.00 0.00 4.79
4014 4971 4.208746 CCTCATATATACTCCCTCCGTCC 58.791 52.174 0.00 0.00 0.00 4.79
4015 4972 4.641094 CACCTCATATATACTCCCTCCGTC 59.359 50.000 0.00 0.00 0.00 4.79
4016 4973 4.570079 CCACCTCATATATACTCCCTCCGT 60.570 50.000 0.00 0.00 0.00 4.69
4017 4974 3.954904 CCACCTCATATATACTCCCTCCG 59.045 52.174 0.00 0.00 0.00 4.63
4018 4975 3.707102 GCCACCTCATATATACTCCCTCC 59.293 52.174 0.00 0.00 0.00 4.30
4019 4976 4.353777 TGCCACCTCATATATACTCCCTC 58.646 47.826 0.00 0.00 0.00 4.30
4020 4977 4.419984 TGCCACCTCATATATACTCCCT 57.580 45.455 0.00 0.00 0.00 4.20
4021 4978 4.716784 TCATGCCACCTCATATATACTCCC 59.283 45.833 0.00 0.00 0.00 4.30
4022 4979 5.939764 TCATGCCACCTCATATATACTCC 57.060 43.478 0.00 0.00 0.00 3.85
4023 4980 6.070538 AGGTTCATGCCACCTCATATATACTC 60.071 42.308 9.97 0.00 41.08 2.59
4024 4981 5.787494 AGGTTCATGCCACCTCATATATACT 59.213 40.000 9.97 0.00 41.08 2.12
4025 4982 6.054860 AGGTTCATGCCACCTCATATATAC 57.945 41.667 9.97 0.00 41.08 1.47
4026 4983 7.995052 ATAGGTTCATGCCACCTCATATATA 57.005 36.000 17.26 2.24 44.08 0.86
4027 4984 6.898171 ATAGGTTCATGCCACCTCATATAT 57.102 37.500 17.26 5.35 44.08 0.86
4028 4985 7.189087 TCTATAGGTTCATGCCACCTCATATA 58.811 38.462 17.26 10.51 44.08 0.86
4029 4986 6.025539 TCTATAGGTTCATGCCACCTCATAT 58.974 40.000 17.26 10.03 44.08 1.78
4030 4987 5.402630 TCTATAGGTTCATGCCACCTCATA 58.597 41.667 17.26 12.70 44.08 2.15
4031 4988 4.234550 TCTATAGGTTCATGCCACCTCAT 58.765 43.478 17.26 12.36 44.08 2.90
4067 5024 5.821995 CCAAATCCAAAACATGTTTCAACCT 59.178 36.000 23.47 5.47 31.45 3.50
4112 5069 9.028284 AGTAAAGATTCACATCCAAATCACATT 57.972 29.630 0.00 0.00 34.91 2.71
4113 5070 8.585471 AGTAAAGATTCACATCCAAATCACAT 57.415 30.769 0.00 0.00 34.91 3.21
4114 5071 9.166173 CTAGTAAAGATTCACATCCAAATCACA 57.834 33.333 0.00 0.00 34.91 3.58
4115 5072 8.616076 CCTAGTAAAGATTCACATCCAAATCAC 58.384 37.037 0.00 0.00 34.91 3.06
4116 5073 7.283127 GCCTAGTAAAGATTCACATCCAAATCA 59.717 37.037 0.00 0.00 34.91 2.57
4117 5074 7.283127 TGCCTAGTAAAGATTCACATCCAAATC 59.717 37.037 0.00 0.00 33.06 2.17
4118 5075 7.118723 TGCCTAGTAAAGATTCACATCCAAAT 58.881 34.615 0.00 0.00 0.00 2.32
4119 5076 6.480763 TGCCTAGTAAAGATTCACATCCAAA 58.519 36.000 0.00 0.00 0.00 3.28
4120 5077 6.061022 TGCCTAGTAAAGATTCACATCCAA 57.939 37.500 0.00 0.00 0.00 3.53
4121 5078 5.692115 TGCCTAGTAAAGATTCACATCCA 57.308 39.130 0.00 0.00 0.00 3.41
4122 5079 6.291377 TGATGCCTAGTAAAGATTCACATCC 58.709 40.000 0.00 0.00 32.40 3.51
4123 5080 7.976135 ATGATGCCTAGTAAAGATTCACATC 57.024 36.000 0.00 0.00 33.65 3.06
4124 5081 7.880195 GGTATGATGCCTAGTAAAGATTCACAT 59.120 37.037 0.00 0.00 0.00 3.21
4125 5082 7.217200 GGTATGATGCCTAGTAAAGATTCACA 58.783 38.462 0.00 0.00 0.00 3.58
4126 5083 6.651225 GGGTATGATGCCTAGTAAAGATTCAC 59.349 42.308 0.00 0.00 0.00 3.18
4127 5084 6.558775 AGGGTATGATGCCTAGTAAAGATTCA 59.441 38.462 0.00 0.00 0.00 2.57
4128 5085 7.010339 AGGGTATGATGCCTAGTAAAGATTC 57.990 40.000 0.00 0.00 0.00 2.52
4129 5086 8.506196 TTAGGGTATGATGCCTAGTAAAGATT 57.494 34.615 0.00 0.00 0.00 2.40
4130 5087 8.543774 CATTAGGGTATGATGCCTAGTAAAGAT 58.456 37.037 0.00 0.00 0.00 2.40
4131 5088 7.038302 CCATTAGGGTATGATGCCTAGTAAAGA 60.038 40.741 0.00 0.00 0.00 2.52
4132 5089 7.106239 CCATTAGGGTATGATGCCTAGTAAAG 58.894 42.308 0.00 0.00 0.00 1.85
4133 5090 7.016153 CCATTAGGGTATGATGCCTAGTAAA 57.984 40.000 0.00 0.00 0.00 2.01
4134 5091 6.620877 CCATTAGGGTATGATGCCTAGTAA 57.379 41.667 0.00 0.00 0.00 2.24
4178 5135 3.940319 TCCAATCCAAATTAACCGACGA 58.060 40.909 0.00 0.00 0.00 4.20
4183 5140 8.117813 TGTACTCTTTCCAATCCAAATTAACC 57.882 34.615 0.00 0.00 0.00 2.85
4193 5150 9.847224 TCCCTAATTATTGTACTCTTTCCAATC 57.153 33.333 0.00 0.00 31.63 2.67
4196 5153 9.847224 GAATCCCTAATTATTGTACTCTTTCCA 57.153 33.333 0.00 0.00 0.00 3.53
4200 5157 9.225682 TCTGGAATCCCTAATTATTGTACTCTT 57.774 33.333 0.00 0.00 0.00 2.85
4207 5164 7.880160 TTGTGTCTGGAATCCCTAATTATTG 57.120 36.000 0.00 0.00 0.00 1.90
4219 5176 9.520515 AAGACTAATGTTTATTGTGTCTGGAAT 57.479 29.630 0.00 0.00 39.29 3.01
4266 5223 5.178623 TCAACCGATAATTTGACAGTGTGAC 59.821 40.000 0.00 0.00 0.00 3.67
4274 5231 4.083537 TGCACACTCAACCGATAATTTGAC 60.084 41.667 0.00 0.00 0.00 3.18
4285 5243 1.748493 TGAGGTTTTGCACACTCAACC 59.252 47.619 6.41 5.04 37.06 3.77
4297 5255 0.447801 GATCACGCGCATGAGGTTTT 59.552 50.000 13.19 0.00 30.46 2.43
4310 5268 5.466432 TCTACTCGTTACTCAAGATCACG 57.534 43.478 0.00 0.00 0.00 4.35
4322 5280 3.372206 GTCGTGCTACCTTCTACTCGTTA 59.628 47.826 0.00 0.00 0.00 3.18
4354 5312 9.503427 GTAATTACTTAGTCAATTTGGCATGTC 57.497 33.333 8.41 0.00 0.00 3.06
4357 5315 8.588290 TGGTAATTACTTAGTCAATTTGGCAT 57.412 30.769 15.05 0.00 0.00 4.40
4366 5324 9.206870 CGGTAAAACTTGGTAATTACTTAGTCA 57.793 33.333 15.05 1.82 0.00 3.41
4487 5446 8.673626 AACATGATCAAACGAATGATAACAAC 57.326 30.769 0.00 0.00 40.08 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.