Multiple sequence alignment - TraesCS1B01G295700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G295700 | chr1B | 100.000 | 2622 | 0 | 0 | 1 | 2622 | 513546767 | 513544146 | 0.000000e+00 | 4843 |
1 | TraesCS1B01G295700 | chr1B | 98.734 | 79 | 1 | 0 | 612 | 690 | 513546078 | 513546000 | 9.780000e-30 | 141 |
2 | TraesCS1B01G295700 | chr1B | 98.734 | 79 | 1 | 0 | 690 | 768 | 513546156 | 513546078 | 9.780000e-30 | 141 |
3 | TraesCS1B01G295700 | chr1A | 85.647 | 1268 | 102 | 39 | 697 | 1938 | 483034351 | 483033138 | 0.000000e+00 | 1260 |
4 | TraesCS1B01G295700 | chr1A | 85.975 | 713 | 57 | 19 | 1946 | 2622 | 483033088 | 483032383 | 0.000000e+00 | 723 |
5 | TraesCS1B01G295700 | chr1A | 84.943 | 704 | 74 | 21 | 5 | 680 | 483034988 | 483034289 | 0.000000e+00 | 684 |
6 | TraesCS1B01G295700 | chr1D | 87.368 | 1140 | 86 | 29 | 697 | 1821 | 383320721 | 383319625 | 0.000000e+00 | 1254 |
7 | TraesCS1B01G295700 | chr1D | 87.111 | 675 | 52 | 19 | 1978 | 2622 | 383319577 | 383318908 | 0.000000e+00 | 732 |
8 | TraesCS1B01G295700 | chr1D | 79.650 | 742 | 77 | 39 | 5 | 688 | 383321376 | 383320651 | 1.420000e-127 | 466 |
9 | TraesCS1B01G295700 | chr3D | 83.077 | 390 | 53 | 11 | 993 | 1375 | 461212843 | 461213226 | 2.500000e-90 | 342 |
10 | TraesCS1B01G295700 | chr3D | 88.571 | 105 | 12 | 0 | 1519 | 1623 | 461213345 | 461213449 | 7.620000e-26 | 128 |
11 | TraesCS1B01G295700 | chr3B | 83.033 | 389 | 55 | 8 | 993 | 1375 | 611727461 | 611727844 | 2.500000e-90 | 342 |
12 | TraesCS1B01G295700 | chr3A | 82.908 | 392 | 52 | 12 | 993 | 1375 | 603803417 | 603803802 | 3.230000e-89 | 339 |
13 | TraesCS1B01G295700 | chr3A | 89.524 | 105 | 11 | 0 | 1519 | 1623 | 603803919 | 603804023 | 1.640000e-27 | 134 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G295700 | chr1B | 513544146 | 513546767 | 2621 | True | 1708.333333 | 4843 | 99.156000 | 1 | 2622 | 3 | chr1B.!!$R1 | 2621 |
1 | TraesCS1B01G295700 | chr1A | 483032383 | 483034988 | 2605 | True | 889.000000 | 1260 | 85.521667 | 5 | 2622 | 3 | chr1A.!!$R1 | 2617 |
2 | TraesCS1B01G295700 | chr1D | 383318908 | 383321376 | 2468 | True | 817.333333 | 1254 | 84.709667 | 5 | 2622 | 3 | chr1D.!!$R1 | 2617 |
3 | TraesCS1B01G295700 | chr3D | 461212843 | 461213449 | 606 | False | 235.000000 | 342 | 85.824000 | 993 | 1623 | 2 | chr3D.!!$F1 | 630 |
4 | TraesCS1B01G295700 | chr3A | 603803417 | 603804023 | 606 | False | 236.500000 | 339 | 86.216000 | 993 | 1623 | 2 | chr3A.!!$F1 | 630 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
379 | 406 | 0.036732 | ATTGCTGCCGAGTTCTTCCA | 59.963 | 50.0 | 0.0 | 0.0 | 0.0 | 3.53 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1777 | 1862 | 0.248621 | GCAAATGGCATCGCAGGTAC | 60.249 | 55.0 | 14.88 | 0.0 | 43.97 | 3.34 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
61 | 62 | 0.107456 | CTCCCTCTGTGCTGTTGTGT | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
64 | 65 | 1.224069 | CCTCTGTGCTGTTGTGTCCG | 61.224 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
67 | 68 | 2.109538 | CTGTGCTGTTGTGTCCGCTG | 62.110 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
124 | 125 | 2.730069 | TCGCATGTTCTTGCTTGTTTG | 58.270 | 42.857 | 8.57 | 0.00 | 40.54 | 2.93 |
155 | 180 | 1.211743 | GCAAAACAAGTGCAGCTTCC | 58.788 | 50.000 | 0.00 | 0.00 | 41.80 | 3.46 |
197 | 222 | 5.306678 | AGATGTTCTAGATTCCAGGATCACC | 59.693 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
198 | 223 | 4.361783 | TGTTCTAGATTCCAGGATCACCA | 58.638 | 43.478 | 0.00 | 0.00 | 38.94 | 4.17 |
219 | 244 | 0.748367 | TCCGCTGCGACTGTCTAGAT | 60.748 | 55.000 | 25.45 | 0.00 | 0.00 | 1.98 |
239 | 264 | 6.347859 | AGATTAGATCCCGTAGTTTCATCC | 57.652 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
252 | 278 | 3.263425 | AGTTTCATCCCGTGAATGGTACT | 59.737 | 43.478 | 0.00 | 0.00 | 45.77 | 2.73 |
295 | 321 | 7.977853 | GTGTTTTTGCCATCATAGAGATTGAAT | 59.022 | 33.333 | 0.00 | 0.00 | 33.72 | 2.57 |
323 | 349 | 5.895636 | AATATGTTCTGTTGCGGATCAAA | 57.104 | 34.783 | 0.00 | 0.00 | 36.26 | 2.69 |
353 | 379 | 4.081420 | GGGTACTGATCTGTGACATCTGTT | 60.081 | 45.833 | 14.91 | 0.00 | 35.02 | 3.16 |
354 | 380 | 5.105752 | GGTACTGATCTGTGACATCTGTTC | 58.894 | 45.833 | 14.91 | 0.77 | 35.02 | 3.18 |
356 | 382 | 3.256879 | ACTGATCTGTGACATCTGTTCGT | 59.743 | 43.478 | 4.21 | 0.00 | 30.56 | 3.85 |
374 | 401 | 1.201921 | CGTACAATTGCTGCCGAGTTC | 60.202 | 52.381 | 5.05 | 0.00 | 0.00 | 3.01 |
379 | 406 | 0.036732 | ATTGCTGCCGAGTTCTTCCA | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
384 | 411 | 0.941542 | TGCCGAGTTCTTCCAAAACG | 59.058 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
386 | 413 | 1.332686 | GCCGAGTTCTTCCAAAACGTT | 59.667 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
389 | 416 | 2.348218 | CGAGTTCTTCCAAAACGTTCCG | 60.348 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
393 | 420 | 3.457610 | TCTTCCAAAACGTTCCGTAGT | 57.542 | 42.857 | 0.00 | 0.00 | 39.99 | 2.73 |
436 | 493 | 3.959535 | ATTAGGTTGGTTTGTGGCATG | 57.040 | 42.857 | 0.00 | 0.00 | 0.00 | 4.06 |
450 | 507 | 1.612950 | TGGCATGTTTAGCTGTTGTGG | 59.387 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
465 | 522 | 1.750193 | TGTGGTATGCTTTGCTAGGC | 58.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
466 | 523 | 0.657840 | GTGGTATGCTTTGCTAGGCG | 59.342 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
467 | 524 | 0.251916 | TGGTATGCTTTGCTAGGCGT | 59.748 | 50.000 | 2.21 | 2.21 | 0.00 | 5.68 |
468 | 525 | 0.657840 | GGTATGCTTTGCTAGGCGTG | 59.342 | 55.000 | 7.22 | 0.00 | 0.00 | 5.34 |
469 | 526 | 0.657840 | GTATGCTTTGCTAGGCGTGG | 59.342 | 55.000 | 7.22 | 0.00 | 0.00 | 4.94 |
470 | 527 | 1.095228 | TATGCTTTGCTAGGCGTGGC | 61.095 | 55.000 | 7.91 | 7.91 | 0.00 | 5.01 |
471 | 528 | 3.055719 | GCTTTGCTAGGCGTGGCA | 61.056 | 61.111 | 13.78 | 13.78 | 38.62 | 4.92 |
472 | 529 | 2.870372 | CTTTGCTAGGCGTGGCAC | 59.130 | 61.111 | 17.45 | 7.79 | 40.39 | 5.01 |
480 | 537 | 0.682852 | TAGGCGTGGCACTTTACTGT | 59.317 | 50.000 | 16.72 | 0.00 | 0.00 | 3.55 |
490 | 552 | 7.125755 | CGTGGCACTTTACTGTCAATTATATG | 58.874 | 38.462 | 16.72 | 0.00 | 0.00 | 1.78 |
526 | 589 | 6.151144 | GCACTTTAGGAACCATTTACATGACT | 59.849 | 38.462 | 0.00 | 0.00 | 31.07 | 3.41 |
536 | 599 | 5.221925 | ACCATTTACATGACTGTCTGTCCTT | 60.222 | 40.000 | 9.51 | 0.00 | 44.75 | 3.36 |
550 | 613 | 6.411376 | TGTCTGTCCTTCTGTTTAAGTTTGA | 58.589 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
554 | 617 | 4.023107 | GTCCTTCTGTTTAAGTTTGAGGCC | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
564 | 627 | 1.699634 | AGTTTGAGGCCTGCTTCTGTA | 59.300 | 47.619 | 12.00 | 0.00 | 0.00 | 2.74 |
569 | 633 | 3.107601 | TGAGGCCTGCTTCTGTATTAGT | 58.892 | 45.455 | 12.00 | 0.00 | 0.00 | 2.24 |
571 | 635 | 4.901849 | TGAGGCCTGCTTCTGTATTAGTAT | 59.098 | 41.667 | 12.00 | 0.00 | 0.00 | 2.12 |
574 | 638 | 4.991687 | GGCCTGCTTCTGTATTAGTATGTC | 59.008 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
587 | 651 | 8.060689 | TGTATTAGTATGTCCCAAGTAGGTGTA | 58.939 | 37.037 | 0.00 | 0.00 | 34.66 | 2.90 |
588 | 652 | 7.598759 | ATTAGTATGTCCCAAGTAGGTGTAG | 57.401 | 40.000 | 0.00 | 0.00 | 34.66 | 2.74 |
607 | 671 | 1.620819 | AGTCTGAAGTAGTGGTGCCAG | 59.379 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
610 | 674 | 1.344438 | CTGAAGTAGTGGTGCCAGACA | 59.656 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
613 | 677 | 2.256117 | AGTAGTGGTGCCAGACAAAC | 57.744 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
616 | 680 | 0.179018 | AGTGGTGCCAGACAAACCTC | 60.179 | 55.000 | 0.00 | 0.00 | 34.90 | 3.85 |
617 | 681 | 0.465460 | GTGGTGCCAGACAAACCTCA | 60.465 | 55.000 | 0.00 | 0.00 | 34.90 | 3.86 |
618 | 682 | 0.179020 | TGGTGCCAGACAAACCTCAG | 60.179 | 55.000 | 0.00 | 0.00 | 34.90 | 3.35 |
619 | 683 | 0.108585 | GGTGCCAGACAAACCTCAGA | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
620 | 684 | 1.271597 | GGTGCCAGACAAACCTCAGAT | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
621 | 685 | 1.808945 | GTGCCAGACAAACCTCAGATG | 59.191 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
622 | 686 | 1.421268 | TGCCAGACAAACCTCAGATGT | 59.579 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
623 | 687 | 2.158623 | TGCCAGACAAACCTCAGATGTT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
624 | 688 | 2.887152 | GCCAGACAAACCTCAGATGTTT | 59.113 | 45.455 | 0.00 | 0.00 | 36.40 | 2.83 |
625 | 689 | 4.072131 | GCCAGACAAACCTCAGATGTTTA | 58.928 | 43.478 | 3.73 | 0.00 | 34.32 | 2.01 |
626 | 690 | 4.083271 | GCCAGACAAACCTCAGATGTTTAC | 60.083 | 45.833 | 3.73 | 2.70 | 34.32 | 2.01 |
627 | 691 | 4.455877 | CCAGACAAACCTCAGATGTTTACC | 59.544 | 45.833 | 3.73 | 0.39 | 34.32 | 2.85 |
628 | 692 | 5.308825 | CAGACAAACCTCAGATGTTTACCT | 58.691 | 41.667 | 3.73 | 2.36 | 34.32 | 3.08 |
629 | 693 | 5.765182 | CAGACAAACCTCAGATGTTTACCTT | 59.235 | 40.000 | 3.73 | 0.00 | 34.32 | 3.50 |
630 | 694 | 6.263168 | CAGACAAACCTCAGATGTTTACCTTT | 59.737 | 38.462 | 3.73 | 0.00 | 34.32 | 3.11 |
631 | 695 | 6.263168 | AGACAAACCTCAGATGTTTACCTTTG | 59.737 | 38.462 | 3.73 | 0.00 | 34.32 | 2.77 |
632 | 696 | 5.221244 | ACAAACCTCAGATGTTTACCTTTGC | 60.221 | 40.000 | 3.73 | 0.00 | 34.32 | 3.68 |
633 | 697 | 3.421844 | ACCTCAGATGTTTACCTTTGCC | 58.578 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
634 | 698 | 3.181434 | ACCTCAGATGTTTACCTTTGCCA | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
635 | 699 | 4.019174 | CCTCAGATGTTTACCTTTGCCAT | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
636 | 700 | 4.463891 | CCTCAGATGTTTACCTTTGCCATT | 59.536 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
637 | 701 | 5.047092 | CCTCAGATGTTTACCTTTGCCATTT | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
638 | 702 | 6.418057 | TCAGATGTTTACCTTTGCCATTTT | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
639 | 703 | 6.825610 | TCAGATGTTTACCTTTGCCATTTTT | 58.174 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
640 | 704 | 6.928492 | TCAGATGTTTACCTTTGCCATTTTTC | 59.072 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
641 | 705 | 5.925969 | AGATGTTTACCTTTGCCATTTTTCG | 59.074 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
642 | 706 | 5.012328 | TGTTTACCTTTGCCATTTTTCGT | 57.988 | 34.783 | 0.00 | 0.00 | 0.00 | 3.85 |
643 | 707 | 5.420409 | TGTTTACCTTTGCCATTTTTCGTT | 58.580 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
644 | 708 | 5.875359 | TGTTTACCTTTGCCATTTTTCGTTT | 59.125 | 32.000 | 0.00 | 0.00 | 0.00 | 3.60 |
645 | 709 | 6.036191 | TGTTTACCTTTGCCATTTTTCGTTTC | 59.964 | 34.615 | 0.00 | 0.00 | 0.00 | 2.78 |
646 | 710 | 3.120041 | ACCTTTGCCATTTTTCGTTTCG | 58.880 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
647 | 711 | 3.120041 | CCTTTGCCATTTTTCGTTTCGT | 58.880 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
648 | 712 | 3.553917 | CCTTTGCCATTTTTCGTTTCGTT | 59.446 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
649 | 713 | 4.740695 | CCTTTGCCATTTTTCGTTTCGTTA | 59.259 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
650 | 714 | 5.331980 | CCTTTGCCATTTTTCGTTTCGTTAC | 60.332 | 40.000 | 0.00 | 0.00 | 0.00 | 2.50 |
651 | 715 | 3.630101 | TGCCATTTTTCGTTTCGTTACC | 58.370 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
652 | 716 | 3.066342 | TGCCATTTTTCGTTTCGTTACCA | 59.934 | 39.130 | 0.00 | 0.00 | 0.00 | 3.25 |
653 | 717 | 4.043073 | GCCATTTTTCGTTTCGTTACCAA | 58.957 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
654 | 718 | 4.682401 | GCCATTTTTCGTTTCGTTACCAAT | 59.318 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
655 | 719 | 5.164129 | GCCATTTTTCGTTTCGTTACCAATC | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
656 | 720 | 6.146898 | CCATTTTTCGTTTCGTTACCAATCT | 58.853 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
657 | 721 | 6.639279 | CCATTTTTCGTTTCGTTACCAATCTT | 59.361 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
658 | 722 | 7.358023 | CCATTTTTCGTTTCGTTACCAATCTTG | 60.358 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
659 | 723 | 5.738118 | TTTCGTTTCGTTACCAATCTTGT | 57.262 | 34.783 | 0.00 | 0.00 | 0.00 | 3.16 |
660 | 724 | 4.977741 | TCGTTTCGTTACCAATCTTGTC | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
661 | 725 | 4.370049 | TCGTTTCGTTACCAATCTTGTCA | 58.630 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
662 | 726 | 4.809958 | TCGTTTCGTTACCAATCTTGTCAA | 59.190 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
663 | 727 | 4.901881 | CGTTTCGTTACCAATCTTGTCAAC | 59.098 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
664 | 728 | 5.209977 | GTTTCGTTACCAATCTTGTCAACC | 58.790 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
665 | 729 | 4.074627 | TCGTTACCAATCTTGTCAACCA | 57.925 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
666 | 730 | 4.647611 | TCGTTACCAATCTTGTCAACCAT | 58.352 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
667 | 731 | 4.454161 | TCGTTACCAATCTTGTCAACCATG | 59.546 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
668 | 732 | 4.454161 | CGTTACCAATCTTGTCAACCATGA | 59.546 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
669 | 733 | 5.123820 | CGTTACCAATCTTGTCAACCATGAT | 59.876 | 40.000 | 0.00 | 0.00 | 39.06 | 2.45 |
670 | 734 | 6.324819 | GTTACCAATCTTGTCAACCATGATG | 58.675 | 40.000 | 0.00 | 0.00 | 37.83 | 3.07 |
671 | 735 | 4.665451 | ACCAATCTTGTCAACCATGATGA | 58.335 | 39.130 | 0.00 | 0.00 | 37.83 | 2.92 |
672 | 736 | 5.266788 | ACCAATCTTGTCAACCATGATGAT | 58.733 | 37.500 | 0.00 | 0.00 | 37.83 | 2.45 |
673 | 737 | 5.718130 | ACCAATCTTGTCAACCATGATGATT | 59.282 | 36.000 | 0.00 | 0.00 | 37.83 | 2.57 |
674 | 738 | 6.211986 | ACCAATCTTGTCAACCATGATGATTT | 59.788 | 34.615 | 0.00 | 0.00 | 37.83 | 2.17 |
675 | 739 | 7.396907 | ACCAATCTTGTCAACCATGATGATTTA | 59.603 | 33.333 | 0.00 | 0.00 | 37.83 | 1.40 |
676 | 740 | 7.919091 | CCAATCTTGTCAACCATGATGATTTAG | 59.081 | 37.037 | 0.00 | 0.00 | 37.83 | 1.85 |
677 | 741 | 8.680001 | CAATCTTGTCAACCATGATGATTTAGA | 58.320 | 33.333 | 0.00 | 3.97 | 37.83 | 2.10 |
678 | 742 | 8.991783 | ATCTTGTCAACCATGATGATTTAGAT | 57.008 | 30.769 | 0.00 | 5.89 | 36.78 | 1.98 |
679 | 743 | 8.217131 | TCTTGTCAACCATGATGATTTAGATG | 57.783 | 34.615 | 0.00 | 0.00 | 38.01 | 2.90 |
680 | 744 | 6.381481 | TGTCAACCATGATGATTTAGATGC | 57.619 | 37.500 | 0.00 | 0.00 | 38.01 | 3.91 |
681 | 745 | 6.124340 | TGTCAACCATGATGATTTAGATGCT | 58.876 | 36.000 | 0.00 | 0.00 | 38.01 | 3.79 |
682 | 746 | 6.604396 | TGTCAACCATGATGATTTAGATGCTT | 59.396 | 34.615 | 0.00 | 0.00 | 38.01 | 3.91 |
683 | 747 | 7.774625 | TGTCAACCATGATGATTTAGATGCTTA | 59.225 | 33.333 | 0.00 | 0.00 | 38.01 | 3.09 |
684 | 748 | 8.623903 | GTCAACCATGATGATTTAGATGCTTAA | 58.376 | 33.333 | 0.00 | 0.00 | 38.01 | 1.85 |
685 | 749 | 9.358406 | TCAACCATGATGATTTAGATGCTTAAT | 57.642 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
686 | 750 | 9.406828 | CAACCATGATGATTTAGATGCTTAATG | 57.593 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
687 | 751 | 8.118976 | ACCATGATGATTTAGATGCTTAATGG | 57.881 | 34.615 | 0.00 | 0.00 | 36.57 | 3.16 |
688 | 752 | 7.177921 | ACCATGATGATTTAGATGCTTAATGGG | 59.822 | 37.037 | 0.00 | 0.00 | 35.15 | 4.00 |
689 | 753 | 7.395206 | CCATGATGATTTAGATGCTTAATGGGA | 59.605 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
690 | 754 | 8.799367 | CATGATGATTTAGATGCTTAATGGGAA | 58.201 | 33.333 | 0.00 | 0.00 | 0.00 | 3.97 |
691 | 755 | 8.169977 | TGATGATTTAGATGCTTAATGGGAAC | 57.830 | 34.615 | 0.00 | 0.00 | 0.00 | 3.62 |
713 | 777 | 4.019174 | CCTCAGATGTTTACCTTTGCCAT | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
738 | 803 | 7.743520 | TTTTTGTTTCGTTACCAATCTTGTC | 57.256 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
758 | 823 | 6.381481 | TGTCAACCATGATGATTTAGATGC | 57.619 | 37.500 | 0.00 | 0.00 | 38.01 | 3.91 |
759 | 824 | 6.124340 | TGTCAACCATGATGATTTAGATGCT | 58.876 | 36.000 | 0.00 | 0.00 | 38.01 | 3.79 |
766 | 831 | 7.177921 | ACCATGATGATTTAGATGCTTAATGGG | 59.822 | 37.037 | 0.00 | 0.00 | 35.15 | 4.00 |
785 | 851 | 5.382664 | TGGGATTCCACCTAGTTTATTCC | 57.617 | 43.478 | 4.80 | 0.00 | 38.32 | 3.01 |
795 | 861 | 3.947196 | CCTAGTTTATTCCATGTGCTGCA | 59.053 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
826 | 893 | 2.865119 | ATGTCACAGCTTGTCATCCA | 57.135 | 45.000 | 0.00 | 0.00 | 28.95 | 3.41 |
827 | 894 | 2.865119 | TGTCACAGCTTGTCATCCAT | 57.135 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
829 | 896 | 3.489355 | TGTCACAGCTTGTCATCCATTT | 58.511 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
832 | 899 | 4.217118 | GTCACAGCTTGTCATCCATTTTCT | 59.783 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
833 | 900 | 4.216902 | TCACAGCTTGTCATCCATTTTCTG | 59.783 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
834 | 901 | 4.022589 | CACAGCTTGTCATCCATTTTCTGT | 60.023 | 41.667 | 0.00 | 0.00 | 33.13 | 3.41 |
835 | 902 | 5.181811 | CACAGCTTGTCATCCATTTTCTGTA | 59.818 | 40.000 | 0.00 | 0.00 | 31.88 | 2.74 |
836 | 903 | 5.948162 | ACAGCTTGTCATCCATTTTCTGTAT | 59.052 | 36.000 | 0.00 | 0.00 | 31.40 | 2.29 |
837 | 904 | 6.127814 | ACAGCTTGTCATCCATTTTCTGTATG | 60.128 | 38.462 | 0.00 | 0.00 | 31.40 | 2.39 |
838 | 905 | 5.948162 | AGCTTGTCATCCATTTTCTGTATGT | 59.052 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
839 | 906 | 6.094603 | AGCTTGTCATCCATTTTCTGTATGTC | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
840 | 907 | 6.127925 | GCTTGTCATCCATTTTCTGTATGTCA | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
841 | 908 | 6.741992 | TGTCATCCATTTTCTGTATGTCAC | 57.258 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
842 | 909 | 6.237154 | TGTCATCCATTTTCTGTATGTCACA | 58.763 | 36.000 | 0.00 | 0.00 | 35.30 | 3.58 |
852 | 919 | 3.282831 | TGTATGTCACAGTGTCACTCG | 57.717 | 47.619 | 1.37 | 1.84 | 31.89 | 4.18 |
853 | 920 | 2.621526 | TGTATGTCACAGTGTCACTCGT | 59.378 | 45.455 | 1.37 | 2.49 | 31.89 | 4.18 |
856 | 923 | 0.577269 | GTCACAGTGTCACTCGTTGC | 59.423 | 55.000 | 1.37 | 0.00 | 0.00 | 4.17 |
857 | 924 | 0.459899 | TCACAGTGTCACTCGTTGCT | 59.540 | 50.000 | 1.37 | 0.00 | 0.00 | 3.91 |
864 | 931 | 4.923871 | CAGTGTCACTCGTTGCTAGTTTAT | 59.076 | 41.667 | 1.37 | 0.00 | 0.00 | 1.40 |
866 | 933 | 4.921515 | GTGTCACTCGTTGCTAGTTTATCA | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
873 | 940 | 7.010552 | CACTCGTTGCTAGTTTATCAGCTATTT | 59.989 | 37.037 | 0.00 | 0.00 | 38.63 | 1.40 |
874 | 941 | 7.010552 | ACTCGTTGCTAGTTTATCAGCTATTTG | 59.989 | 37.037 | 0.00 | 0.00 | 38.63 | 2.32 |
879 | 946 | 8.752005 | TGCTAGTTTATCAGCTATTTGGAAAT | 57.248 | 30.769 | 0.00 | 0.00 | 38.63 | 2.17 |
880 | 947 | 8.623903 | TGCTAGTTTATCAGCTATTTGGAAATG | 58.376 | 33.333 | 0.00 | 0.00 | 38.63 | 2.32 |
896 | 964 | 3.438434 | GGAAATGAGTCTTGCCACTCTTC | 59.562 | 47.826 | 8.54 | 5.53 | 43.00 | 2.87 |
907 | 975 | 2.165998 | GCCACTCTTCCTCTTTGCATT | 58.834 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
911 | 979 | 4.320788 | CCACTCTTCCTCTTTGCATTTGAC | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
923 | 991 | 8.715191 | TCTTTGCATTTGACTATGTTGTTTTT | 57.285 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
946 | 1014 | 4.148128 | ACTCCTCAGCAGAAATATGTGG | 57.852 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
947 | 1015 | 3.776969 | ACTCCTCAGCAGAAATATGTGGA | 59.223 | 43.478 | 0.00 | 0.00 | 35.79 | 4.02 |
948 | 1016 | 4.225942 | ACTCCTCAGCAGAAATATGTGGAA | 59.774 | 41.667 | 0.00 | 0.00 | 36.48 | 3.53 |
949 | 1017 | 5.104193 | ACTCCTCAGCAGAAATATGTGGAAT | 60.104 | 40.000 | 0.00 | 0.00 | 36.48 | 3.01 |
953 | 1021 | 6.543465 | CCTCAGCAGAAATATGTGGAATGTAA | 59.457 | 38.462 | 0.00 | 0.00 | 30.83 | 2.41 |
954 | 1022 | 7.255035 | CCTCAGCAGAAATATGTGGAATGTAAG | 60.255 | 40.741 | 0.00 | 0.00 | 30.83 | 2.34 |
958 | 1026 | 6.318648 | GCAGAAATATGTGGAATGTAAGGTGA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
959 | 1027 | 7.679638 | GCAGAAATATGTGGAATGTAAGGTGAC | 60.680 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
964 | 1032 | 5.160607 | TGTGGAATGTAAGGTGACCTTAG | 57.839 | 43.478 | 23.62 | 0.00 | 45.42 | 2.18 |
965 | 1033 | 4.595781 | TGTGGAATGTAAGGTGACCTTAGT | 59.404 | 41.667 | 23.62 | 13.02 | 45.42 | 2.24 |
979 | 1047 | 6.403878 | GTGACCTTAGTAATCTTTGTGCCTA | 58.596 | 40.000 | 0.00 | 0.00 | 0.00 | 3.93 |
1095 | 1163 | 1.371467 | TGATCAGGCCCTCCTCAAAA | 58.629 | 50.000 | 0.00 | 0.00 | 41.93 | 2.44 |
1385 | 1456 | 2.610479 | CGTCAGGTCAGCTTCTTTGCTA | 60.610 | 50.000 | 0.00 | 0.00 | 41.98 | 3.49 |
1386 | 1457 | 2.739379 | GTCAGGTCAGCTTCTTTGCTAC | 59.261 | 50.000 | 0.00 | 0.00 | 41.98 | 3.58 |
1387 | 1458 | 2.634940 | TCAGGTCAGCTTCTTTGCTACT | 59.365 | 45.455 | 0.00 | 0.00 | 41.98 | 2.57 |
1388 | 1459 | 3.071602 | TCAGGTCAGCTTCTTTGCTACTT | 59.928 | 43.478 | 0.00 | 0.00 | 41.98 | 2.24 |
1391 | 1462 | 5.645497 | CAGGTCAGCTTCTTTGCTACTTTAT | 59.355 | 40.000 | 0.00 | 0.00 | 41.98 | 1.40 |
1393 | 1464 | 7.334421 | CAGGTCAGCTTCTTTGCTACTTTATTA | 59.666 | 37.037 | 0.00 | 0.00 | 41.98 | 0.98 |
1394 | 1465 | 8.049721 | AGGTCAGCTTCTTTGCTACTTTATTAT | 58.950 | 33.333 | 0.00 | 0.00 | 41.98 | 1.28 |
1395 | 1466 | 8.125448 | GGTCAGCTTCTTTGCTACTTTATTATG | 58.875 | 37.037 | 0.00 | 0.00 | 41.98 | 1.90 |
1397 | 1468 | 7.554118 | TCAGCTTCTTTGCTACTTTATTATGCT | 59.446 | 33.333 | 0.00 | 0.00 | 41.98 | 3.79 |
1398 | 1469 | 8.830580 | CAGCTTCTTTGCTACTTTATTATGCTA | 58.169 | 33.333 | 0.00 | 0.00 | 41.98 | 3.49 |
1401 | 1472 | 9.604626 | CTTCTTTGCTACTTTATTATGCTATGC | 57.395 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
1446 | 1526 | 4.805192 | GTGTAGCATTGCCATATTTTGTGG | 59.195 | 41.667 | 4.70 | 0.00 | 39.80 | 4.17 |
1460 | 1540 | 5.850557 | ATTTTGTGGTCATGAACTGTGAA | 57.149 | 34.783 | 12.94 | 2.71 | 0.00 | 3.18 |
1462 | 1542 | 3.558931 | TGTGGTCATGAACTGTGAACT | 57.441 | 42.857 | 12.94 | 0.00 | 34.41 | 3.01 |
1478 | 1559 | 4.823442 | TGTGAACTACGACTCTTCCAAGTA | 59.177 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1480 | 1561 | 5.628606 | GTGAACTACGACTCTTCCAAGTAAC | 59.371 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1482 | 1563 | 6.712095 | TGAACTACGACTCTTCCAAGTAACTA | 59.288 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
1483 | 1564 | 6.493449 | ACTACGACTCTTCCAAGTAACTAC | 57.507 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
1484 | 1565 | 4.780275 | ACGACTCTTCCAAGTAACTACC | 57.220 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1623 | 1708 | 5.241662 | AGTGCTAGGCTTTTTCTACTGAAG | 58.758 | 41.667 | 0.00 | 0.00 | 33.28 | 3.02 |
1625 | 1710 | 4.286032 | TGCTAGGCTTTTTCTACTGAAGGA | 59.714 | 41.667 | 0.00 | 0.00 | 33.28 | 3.36 |
1764 | 1849 | 7.759489 | TCAGTTAATTATGAGGTGCACTTTT | 57.241 | 32.000 | 17.98 | 2.27 | 0.00 | 2.27 |
1771 | 1856 | 8.538409 | AATTATGAGGTGCACTTTTGAATTTC | 57.462 | 30.769 | 17.98 | 0.00 | 0.00 | 2.17 |
1773 | 1858 | 3.629855 | TGAGGTGCACTTTTGAATTTCGA | 59.370 | 39.130 | 17.98 | 0.00 | 0.00 | 3.71 |
1777 | 1862 | 3.659444 | GTGCACTTTTGAATTTCGAGTCG | 59.341 | 43.478 | 10.32 | 6.09 | 0.00 | 4.18 |
1789 | 1874 | 1.939785 | CGAGTCGTACCTGCGATGC | 60.940 | 63.158 | 3.82 | 0.00 | 43.07 | 3.91 |
1790 | 1875 | 1.589196 | GAGTCGTACCTGCGATGCC | 60.589 | 63.158 | 0.00 | 0.00 | 43.07 | 4.40 |
1791 | 1876 | 2.183300 | GTCGTACCTGCGATGCCA | 59.817 | 61.111 | 0.00 | 0.00 | 43.07 | 4.92 |
1793 | 1878 | 0.810031 | GTCGTACCTGCGATGCCATT | 60.810 | 55.000 | 0.00 | 0.00 | 43.07 | 3.16 |
1796 | 1881 | 0.248621 | GTACCTGCGATGCCATTTGC | 60.249 | 55.000 | 0.00 | 0.00 | 41.77 | 3.68 |
1797 | 1882 | 1.713937 | TACCTGCGATGCCATTTGCG | 61.714 | 55.000 | 0.00 | 0.00 | 45.60 | 4.85 |
1846 | 1949 | 3.599343 | TGTGCTGTGCTAGTATTTCTGG | 58.401 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1853 | 1956 | 2.131183 | GCTAGTATTTCTGGAGCTGCG | 58.869 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
1854 | 1957 | 2.131183 | CTAGTATTTCTGGAGCTGCGC | 58.869 | 52.381 | 0.00 | 0.00 | 0.00 | 6.09 |
1884 | 1990 | 2.051692 | ACGCAGGGGTATTATTAGCCA | 58.948 | 47.619 | 13.37 | 0.00 | 46.01 | 4.75 |
1903 | 2009 | 3.494048 | GCCAGTCTGGATCTTGAGTATGG | 60.494 | 52.174 | 23.77 | 2.23 | 40.96 | 2.74 |
1905 | 2011 | 4.442612 | CCAGTCTGGATCTTGAGTATGGTG | 60.443 | 50.000 | 14.26 | 0.00 | 40.96 | 4.17 |
1907 | 2013 | 2.435805 | TCTGGATCTTGAGTATGGTGCC | 59.564 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1908 | 2014 | 2.437281 | CTGGATCTTGAGTATGGTGCCT | 59.563 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1909 | 2015 | 2.171237 | TGGATCTTGAGTATGGTGCCTG | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1912 | 2018 | 4.141711 | GGATCTTGAGTATGGTGCCTGTTA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.41 |
1914 | 2020 | 5.023533 | TCTTGAGTATGGTGCCTGTTATC | 57.976 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
1915 | 2021 | 4.716784 | TCTTGAGTATGGTGCCTGTTATCT | 59.283 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
1917 | 2025 | 5.435686 | TGAGTATGGTGCCTGTTATCTTT | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1920 | 2028 | 5.815581 | AGTATGGTGCCTGTTATCTTTTCA | 58.184 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
1927 | 2035 | 5.569059 | GTGCCTGTTATCTTTTCATTTGTCG | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1930 | 2038 | 6.403200 | GCCTGTTATCTTTTCATTTGTCGCTA | 60.403 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
1933 | 2041 | 9.559958 | CTGTTATCTTTTCATTTGTCGCTATTT | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1938 | 2046 | 4.511617 | TTCATTTGTCGCTATTTTGGCA | 57.488 | 36.364 | 0.00 | 0.00 | 0.00 | 4.92 |
1939 | 2047 | 4.717233 | TCATTTGTCGCTATTTTGGCAT | 57.283 | 36.364 | 0.00 | 0.00 | 0.00 | 4.40 |
1941 | 2049 | 2.276472 | TTGTCGCTATTTTGGCATGC | 57.724 | 45.000 | 9.90 | 9.90 | 0.00 | 4.06 |
1944 | 2094 | 1.401552 | GTCGCTATTTTGGCATGCTGA | 59.598 | 47.619 | 18.92 | 3.32 | 0.00 | 4.26 |
1955 | 2105 | 0.029035 | GCATGCTGATTGCTTCTCCG | 59.971 | 55.000 | 11.37 | 0.00 | 43.37 | 4.63 |
1959 | 2109 | 2.826428 | TGCTGATTGCTTCTCCGTATC | 58.174 | 47.619 | 0.00 | 0.00 | 43.37 | 2.24 |
1962 | 2112 | 3.984633 | GCTGATTGCTTCTCCGTATCTAC | 59.015 | 47.826 | 0.00 | 0.00 | 38.95 | 2.59 |
1963 | 2113 | 5.369250 | GCTGATTGCTTCTCCGTATCTACG | 61.369 | 50.000 | 2.80 | 2.80 | 42.91 | 3.51 |
1982 | 2132 | 2.159198 | ACGCATCATTTTGAATGCCTCC | 60.159 | 45.455 | 2.06 | 0.00 | 36.75 | 4.30 |
2029 | 2179 | 2.094854 | GGGCATTTCAAGTGCTTCTCAG | 60.095 | 50.000 | 4.71 | 0.00 | 42.16 | 3.35 |
2040 | 2190 | 4.013050 | AGTGCTTCTCAGCCCTAAAATTC | 58.987 | 43.478 | 0.00 | 0.00 | 46.74 | 2.17 |
2062 | 2219 | 9.709495 | AATTCATGTTTCTTTTAGCATAAGCAA | 57.291 | 25.926 | 0.00 | 0.00 | 45.49 | 3.91 |
2063 | 2220 | 9.709495 | ATTCATGTTTCTTTTAGCATAAGCAAA | 57.291 | 25.926 | 0.00 | 0.00 | 45.49 | 3.68 |
2076 | 2233 | 9.585099 | TTAGCATAAGCAAAATTGTTATTGGAG | 57.415 | 29.630 | 0.00 | 0.00 | 45.49 | 3.86 |
2085 | 2253 | 7.095102 | GCAAAATTGTTATTGGAGCTTTGTGAT | 60.095 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2089 | 2257 | 2.226962 | ATTGGAGCTTTGTGATGGCT | 57.773 | 45.000 | 0.00 | 0.00 | 39.16 | 4.75 |
2111 | 2279 | 6.471198 | GGCTATTTCCACACGCTTATTTAAAC | 59.529 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
2117 | 2285 | 5.473846 | TCCACACGCTTATTTAAACCATTGA | 59.526 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2118 | 2286 | 6.151985 | TCCACACGCTTATTTAAACCATTGAT | 59.848 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2119 | 2287 | 6.253298 | CCACACGCTTATTTAAACCATTGATG | 59.747 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
2120 | 2288 | 7.026562 | CACACGCTTATTTAAACCATTGATGA | 58.973 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
2130 | 2310 | 8.648698 | TTTAAACCATTGATGAGATTTCTCCA | 57.351 | 30.769 | 5.17 | 0.00 | 42.20 | 3.86 |
2135 | 2315 | 6.546403 | ACCATTGATGAGATTTCTCCATGAAG | 59.454 | 38.462 | 5.17 | 0.00 | 42.20 | 3.02 |
2159 | 2339 | 8.572855 | AGCAGTCTTTGAAGCTTCTATTATTT | 57.427 | 30.769 | 26.09 | 5.20 | 32.52 | 1.40 |
2160 | 2340 | 9.672673 | AGCAGTCTTTGAAGCTTCTATTATTTA | 57.327 | 29.630 | 26.09 | 1.25 | 32.52 | 1.40 |
2161 | 2341 | 9.928236 | GCAGTCTTTGAAGCTTCTATTATTTAG | 57.072 | 33.333 | 26.09 | 12.31 | 0.00 | 1.85 |
2191 | 2371 | 6.575162 | AAAACAGCGAATGATAAACTTCCT | 57.425 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
2324 | 2504 | 1.081442 | GCACTTGCGTTAGTTGGGC | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2325 | 2505 | 1.579429 | CACTTGCGTTAGTTGGGCC | 59.421 | 57.895 | 0.00 | 0.00 | 0.00 | 5.80 |
2327 | 2507 | 0.889186 | ACTTGCGTTAGTTGGGCCAG | 60.889 | 55.000 | 6.23 | 0.00 | 0.00 | 4.85 |
2548 | 2745 | 2.487265 | GGAGTTGAAAGGAAGCCAGTGA | 60.487 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2561 | 2758 | 1.200020 | GCCAGTGATGTTCCCTTTTCG | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
2563 | 2760 | 1.200020 | CAGTGATGTTCCCTTTTCGCC | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
2569 | 2766 | 2.157452 | TTCCCTTTTCGCCCCTCCA | 61.157 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
2571 | 2768 | 1.000359 | CCCTTTTCGCCCCTCCATT | 60.000 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
2616 | 2813 | 0.317269 | CCGATTGCTTATGCTTGGCG | 60.317 | 55.000 | 1.96 | 1.46 | 40.48 | 5.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
61 | 62 | 2.362397 | GGATCTGATCAGTAACAGCGGA | 59.638 | 50.000 | 21.92 | 0.17 | 34.57 | 5.54 |
64 | 65 | 4.125703 | CCAAGGATCTGATCAGTAACAGC | 58.874 | 47.826 | 21.92 | 5.75 | 34.57 | 4.40 |
67 | 68 | 6.127897 | CCAAAACCAAGGATCTGATCAGTAAC | 60.128 | 42.308 | 21.92 | 12.75 | 0.00 | 2.50 |
124 | 125 | 1.816074 | TGTTTTGCACCGGATAGACC | 58.184 | 50.000 | 9.46 | 0.00 | 0.00 | 3.85 |
155 | 180 | 6.609237 | ACATCTTAATTCATCATCACACCG | 57.391 | 37.500 | 0.00 | 0.00 | 0.00 | 4.94 |
188 | 213 | 3.303189 | AGCGGACTGGTGATCCTG | 58.697 | 61.111 | 0.00 | 0.00 | 38.41 | 3.86 |
214 | 239 | 7.363094 | GGGATGAAACTACGGGATCTAATCTAG | 60.363 | 44.444 | 0.00 | 0.00 | 0.00 | 2.43 |
219 | 244 | 3.319972 | CGGGATGAAACTACGGGATCTAA | 59.680 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
239 | 264 | 8.335356 | CAATAATTTGACTAGTACCATTCACGG | 58.665 | 37.037 | 0.00 | 0.00 | 34.60 | 4.94 |
252 | 278 | 5.968528 | AAACACGCCCAATAATTTGACTA | 57.031 | 34.783 | 0.00 | 0.00 | 34.60 | 2.59 |
295 | 321 | 4.930405 | TCCGCAACAGAACATATTTCGTTA | 59.070 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
297 | 323 | 3.331150 | TCCGCAACAGAACATATTTCGT | 58.669 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
298 | 324 | 4.033932 | TGATCCGCAACAGAACATATTTCG | 59.966 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
323 | 349 | 1.076923 | AGATCAGTACCCCGCGTCT | 60.077 | 57.895 | 4.92 | 0.00 | 0.00 | 4.18 |
353 | 379 | 0.037697 | ACTCGGCAGCAATTGTACGA | 60.038 | 50.000 | 7.40 | 10.70 | 37.01 | 3.43 |
354 | 380 | 0.796312 | AACTCGGCAGCAATTGTACG | 59.204 | 50.000 | 7.40 | 7.04 | 0.00 | 3.67 |
356 | 382 | 2.472695 | AGAACTCGGCAGCAATTGTA | 57.527 | 45.000 | 7.40 | 0.00 | 0.00 | 2.41 |
384 | 411 | 2.259266 | TTGGTTTCCCACTACGGAAC | 57.741 | 50.000 | 0.00 | 0.00 | 41.69 | 3.62 |
386 | 413 | 2.106857 | ACATTTGGTTTCCCACTACGGA | 59.893 | 45.455 | 0.00 | 0.00 | 41.67 | 4.69 |
389 | 416 | 7.175990 | TCAGATAAACATTTGGTTTCCCACTAC | 59.824 | 37.037 | 0.00 | 0.00 | 46.61 | 2.73 |
393 | 420 | 6.985653 | TTCAGATAAACATTTGGTTTCCCA | 57.014 | 33.333 | 0.00 | 0.00 | 46.61 | 4.37 |
401 | 428 | 9.927668 | AACCAACCTAATTCAGATAAACATTTG | 57.072 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
411 | 438 | 3.572255 | GCCACAAACCAACCTAATTCAGA | 59.428 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
412 | 439 | 3.320541 | TGCCACAAACCAACCTAATTCAG | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
413 | 440 | 3.300388 | TGCCACAAACCAACCTAATTCA | 58.700 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
414 | 441 | 4.244862 | CATGCCACAAACCAACCTAATTC | 58.755 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
415 | 442 | 3.645687 | ACATGCCACAAACCAACCTAATT | 59.354 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
417 | 444 | 2.672098 | ACATGCCACAAACCAACCTAA | 58.328 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
418 | 445 | 2.373335 | ACATGCCACAAACCAACCTA | 57.627 | 45.000 | 0.00 | 0.00 | 0.00 | 3.08 |
419 | 446 | 1.494960 | AACATGCCACAAACCAACCT | 58.505 | 45.000 | 0.00 | 0.00 | 0.00 | 3.50 |
420 | 447 | 2.323968 | AAACATGCCACAAACCAACC | 57.676 | 45.000 | 0.00 | 0.00 | 0.00 | 3.77 |
436 | 493 | 4.766404 | AAGCATACCACAACAGCTAAAC | 57.234 | 40.909 | 0.00 | 0.00 | 34.66 | 2.01 |
450 | 507 | 0.657840 | CCACGCCTAGCAAAGCATAC | 59.342 | 55.000 | 0.00 | 0.00 | 0.00 | 2.39 |
465 | 522 | 3.896648 | AATTGACAGTAAAGTGCCACG | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
466 | 523 | 7.910162 | CACATATAATTGACAGTAAAGTGCCAC | 59.090 | 37.037 | 0.00 | 0.00 | 0.00 | 5.01 |
467 | 524 | 7.609918 | ACACATATAATTGACAGTAAAGTGCCA | 59.390 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
468 | 525 | 7.985476 | ACACATATAATTGACAGTAAAGTGCC | 58.015 | 34.615 | 0.00 | 0.00 | 0.00 | 5.01 |
469 | 526 | 9.840427 | AAACACATATAATTGACAGTAAAGTGC | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
480 | 537 | 8.054152 | AGTGCACATGAAACACATATAATTGA | 57.946 | 30.769 | 21.04 | 0.00 | 37.46 | 2.57 |
490 | 552 | 4.829064 | TCCTAAAGTGCACATGAAACAC | 57.171 | 40.909 | 21.04 | 4.52 | 34.48 | 3.32 |
500 | 562 | 6.007076 | TCATGTAAATGGTTCCTAAAGTGCA | 58.993 | 36.000 | 0.00 | 0.00 | 0.00 | 4.57 |
526 | 589 | 6.411376 | TCAAACTTAAACAGAAGGACAGACA | 58.589 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
536 | 599 | 2.884639 | GCAGGCCTCAAACTTAAACAGA | 59.115 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
550 | 613 | 4.656112 | ACATACTAATACAGAAGCAGGCCT | 59.344 | 41.667 | 0.00 | 0.00 | 0.00 | 5.19 |
554 | 617 | 6.161855 | TGGGACATACTAATACAGAAGCAG | 57.838 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
564 | 627 | 7.130775 | ACTACACCTACTTGGGACATACTAAT | 58.869 | 38.462 | 0.00 | 0.00 | 39.30 | 1.73 |
569 | 633 | 4.954202 | CAGACTACACCTACTTGGGACATA | 59.046 | 45.833 | 0.00 | 0.00 | 39.30 | 2.29 |
571 | 635 | 3.162666 | CAGACTACACCTACTTGGGACA | 58.837 | 50.000 | 0.00 | 0.00 | 41.11 | 4.02 |
574 | 638 | 3.833070 | ACTTCAGACTACACCTACTTGGG | 59.167 | 47.826 | 0.00 | 0.00 | 41.11 | 4.12 |
587 | 651 | 1.620819 | CTGGCACCACTACTTCAGACT | 59.379 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
588 | 652 | 1.618837 | TCTGGCACCACTACTTCAGAC | 59.381 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
607 | 671 | 6.438763 | CAAAGGTAAACATCTGAGGTTTGTC | 58.561 | 40.000 | 25.47 | 18.39 | 38.77 | 3.18 |
610 | 674 | 4.280929 | GGCAAAGGTAAACATCTGAGGTTT | 59.719 | 41.667 | 21.90 | 21.90 | 41.11 | 3.27 |
613 | 677 | 3.420893 | TGGCAAAGGTAAACATCTGAGG | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
616 | 680 | 6.128849 | CGAAAAATGGCAAAGGTAAACATCTG | 60.129 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
617 | 681 | 5.925969 | CGAAAAATGGCAAAGGTAAACATCT | 59.074 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
618 | 682 | 5.694458 | ACGAAAAATGGCAAAGGTAAACATC | 59.306 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
619 | 683 | 5.606505 | ACGAAAAATGGCAAAGGTAAACAT | 58.393 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
620 | 684 | 5.012328 | ACGAAAAATGGCAAAGGTAAACA | 57.988 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
621 | 685 | 5.977171 | AACGAAAAATGGCAAAGGTAAAC | 57.023 | 34.783 | 0.00 | 0.00 | 0.00 | 2.01 |
622 | 686 | 5.232414 | CGAAACGAAAAATGGCAAAGGTAAA | 59.768 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
623 | 687 | 4.740695 | CGAAACGAAAAATGGCAAAGGTAA | 59.259 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
624 | 688 | 4.202030 | ACGAAACGAAAAATGGCAAAGGTA | 60.202 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
625 | 689 | 3.120041 | CGAAACGAAAAATGGCAAAGGT | 58.880 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
626 | 690 | 3.120041 | ACGAAACGAAAAATGGCAAAGG | 58.880 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
627 | 691 | 4.770351 | AACGAAACGAAAAATGGCAAAG | 57.230 | 36.364 | 0.00 | 0.00 | 0.00 | 2.77 |
628 | 692 | 4.503370 | GGTAACGAAACGAAAAATGGCAAA | 59.497 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
629 | 693 | 4.043073 | GGTAACGAAACGAAAAATGGCAA | 58.957 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
630 | 694 | 3.066342 | TGGTAACGAAACGAAAAATGGCA | 59.934 | 39.130 | 0.00 | 0.00 | 42.51 | 4.92 |
631 | 695 | 3.630101 | TGGTAACGAAACGAAAAATGGC | 58.370 | 40.909 | 0.00 | 0.00 | 42.51 | 4.40 |
632 | 696 | 6.146898 | AGATTGGTAACGAAACGAAAAATGG | 58.853 | 36.000 | 0.00 | 0.00 | 42.51 | 3.16 |
633 | 697 | 7.166804 | ACAAGATTGGTAACGAAACGAAAAATG | 59.833 | 33.333 | 0.00 | 0.00 | 42.51 | 2.32 |
634 | 698 | 7.197703 | ACAAGATTGGTAACGAAACGAAAAAT | 58.802 | 30.769 | 0.00 | 0.00 | 42.51 | 1.82 |
635 | 699 | 6.553524 | ACAAGATTGGTAACGAAACGAAAAA | 58.446 | 32.000 | 0.00 | 0.00 | 42.51 | 1.94 |
636 | 700 | 6.121613 | ACAAGATTGGTAACGAAACGAAAA | 57.878 | 33.333 | 0.00 | 0.00 | 42.51 | 2.29 |
637 | 701 | 5.293814 | TGACAAGATTGGTAACGAAACGAAA | 59.706 | 36.000 | 0.00 | 0.00 | 42.51 | 3.46 |
638 | 702 | 4.809958 | TGACAAGATTGGTAACGAAACGAA | 59.190 | 37.500 | 0.00 | 0.00 | 42.51 | 3.85 |
639 | 703 | 4.370049 | TGACAAGATTGGTAACGAAACGA | 58.630 | 39.130 | 0.00 | 0.00 | 42.51 | 3.85 |
640 | 704 | 4.718858 | TGACAAGATTGGTAACGAAACG | 57.281 | 40.909 | 0.00 | 0.00 | 42.51 | 3.60 |
641 | 705 | 5.209977 | GGTTGACAAGATTGGTAACGAAAC | 58.790 | 41.667 | 0.00 | 0.00 | 42.51 | 2.78 |
642 | 706 | 4.882427 | TGGTTGACAAGATTGGTAACGAAA | 59.118 | 37.500 | 0.00 | 0.00 | 42.51 | 3.46 |
643 | 707 | 4.452825 | TGGTTGACAAGATTGGTAACGAA | 58.547 | 39.130 | 0.00 | 0.00 | 42.51 | 3.85 |
644 | 708 | 4.074627 | TGGTTGACAAGATTGGTAACGA | 57.925 | 40.909 | 0.00 | 0.00 | 42.51 | 3.85 |
645 | 709 | 4.454161 | TCATGGTTGACAAGATTGGTAACG | 59.546 | 41.667 | 0.00 | 0.00 | 42.51 | 3.18 |
646 | 710 | 5.957842 | TCATGGTTGACAAGATTGGTAAC | 57.042 | 39.130 | 0.00 | 2.34 | 0.00 | 2.50 |
647 | 711 | 6.244654 | TCATCATGGTTGACAAGATTGGTAA | 58.755 | 36.000 | 0.00 | 0.00 | 35.47 | 2.85 |
648 | 712 | 5.814481 | TCATCATGGTTGACAAGATTGGTA | 58.186 | 37.500 | 0.00 | 0.00 | 35.47 | 3.25 |
649 | 713 | 4.665451 | TCATCATGGTTGACAAGATTGGT | 58.335 | 39.130 | 0.00 | 0.00 | 35.47 | 3.67 |
650 | 714 | 5.847111 | ATCATCATGGTTGACAAGATTGG | 57.153 | 39.130 | 0.00 | 0.00 | 35.47 | 3.16 |
651 | 715 | 8.680001 | TCTAAATCATCATGGTTGACAAGATTG | 58.320 | 33.333 | 0.00 | 0.00 | 35.47 | 2.67 |
652 | 716 | 8.812513 | TCTAAATCATCATGGTTGACAAGATT | 57.187 | 30.769 | 0.00 | 0.00 | 35.47 | 2.40 |
653 | 717 | 8.847196 | CATCTAAATCATCATGGTTGACAAGAT | 58.153 | 33.333 | 0.00 | 4.20 | 37.98 | 2.40 |
654 | 718 | 7.201758 | GCATCTAAATCATCATGGTTGACAAGA | 60.202 | 37.037 | 0.00 | 2.20 | 33.85 | 3.02 |
655 | 719 | 6.916387 | GCATCTAAATCATCATGGTTGACAAG | 59.084 | 38.462 | 0.00 | 0.00 | 33.85 | 3.16 |
656 | 720 | 6.604396 | AGCATCTAAATCATCATGGTTGACAA | 59.396 | 34.615 | 0.00 | 0.00 | 33.85 | 3.18 |
657 | 721 | 6.124340 | AGCATCTAAATCATCATGGTTGACA | 58.876 | 36.000 | 0.00 | 0.00 | 33.85 | 3.58 |
658 | 722 | 6.630444 | AGCATCTAAATCATCATGGTTGAC | 57.370 | 37.500 | 0.00 | 0.00 | 33.85 | 3.18 |
659 | 723 | 8.750515 | TTAAGCATCTAAATCATCATGGTTGA | 57.249 | 30.769 | 5.65 | 0.00 | 37.49 | 3.18 |
660 | 724 | 9.406828 | CATTAAGCATCTAAATCATCATGGTTG | 57.593 | 33.333 | 5.65 | 0.00 | 37.49 | 3.77 |
661 | 725 | 8.582437 | CCATTAAGCATCTAAATCATCATGGTT | 58.418 | 33.333 | 0.00 | 0.00 | 39.59 | 3.67 |
662 | 726 | 7.177921 | CCCATTAAGCATCTAAATCATCATGGT | 59.822 | 37.037 | 0.00 | 0.00 | 0.00 | 3.55 |
663 | 727 | 7.395206 | TCCCATTAAGCATCTAAATCATCATGG | 59.605 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
664 | 728 | 8.344446 | TCCCATTAAGCATCTAAATCATCATG | 57.656 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
665 | 729 | 8.800332 | GTTCCCATTAAGCATCTAAATCATCAT | 58.200 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
666 | 730 | 7.231317 | GGTTCCCATTAAGCATCTAAATCATCA | 59.769 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
667 | 731 | 7.449704 | AGGTTCCCATTAAGCATCTAAATCATC | 59.550 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
668 | 732 | 7.300658 | AGGTTCCCATTAAGCATCTAAATCAT | 58.699 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
669 | 733 | 6.672593 | AGGTTCCCATTAAGCATCTAAATCA | 58.327 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
670 | 734 | 6.772716 | TGAGGTTCCCATTAAGCATCTAAATC | 59.227 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
671 | 735 | 6.672593 | TGAGGTTCCCATTAAGCATCTAAAT | 58.327 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
672 | 736 | 6.069673 | TCTGAGGTTCCCATTAAGCATCTAAA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
673 | 737 | 5.428457 | TCTGAGGTTCCCATTAAGCATCTAA | 59.572 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
674 | 738 | 4.968719 | TCTGAGGTTCCCATTAAGCATCTA | 59.031 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
675 | 739 | 3.782523 | TCTGAGGTTCCCATTAAGCATCT | 59.217 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
676 | 740 | 4.156455 | TCTGAGGTTCCCATTAAGCATC | 57.844 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
677 | 741 | 4.079558 | ACATCTGAGGTTCCCATTAAGCAT | 60.080 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
678 | 742 | 3.266772 | ACATCTGAGGTTCCCATTAAGCA | 59.733 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
679 | 743 | 3.891049 | ACATCTGAGGTTCCCATTAAGC | 58.109 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
680 | 744 | 6.318900 | GGTAAACATCTGAGGTTCCCATTAAG | 59.681 | 42.308 | 8.26 | 0.00 | 0.00 | 1.85 |
681 | 745 | 6.011981 | AGGTAAACATCTGAGGTTCCCATTAA | 60.012 | 38.462 | 19.39 | 0.00 | 0.00 | 1.40 |
682 | 746 | 5.491078 | AGGTAAACATCTGAGGTTCCCATTA | 59.509 | 40.000 | 19.39 | 3.88 | 0.00 | 1.90 |
683 | 747 | 4.292306 | AGGTAAACATCTGAGGTTCCCATT | 59.708 | 41.667 | 19.39 | 4.68 | 0.00 | 3.16 |
684 | 748 | 3.852578 | AGGTAAACATCTGAGGTTCCCAT | 59.147 | 43.478 | 19.39 | 6.17 | 0.00 | 4.00 |
685 | 749 | 3.256704 | AGGTAAACATCTGAGGTTCCCA | 58.743 | 45.455 | 19.39 | 4.15 | 0.00 | 4.37 |
686 | 750 | 4.302559 | AAGGTAAACATCTGAGGTTCCC | 57.697 | 45.455 | 8.26 | 11.12 | 0.00 | 3.97 |
687 | 751 | 4.082733 | GCAAAGGTAAACATCTGAGGTTCC | 60.083 | 45.833 | 8.26 | 6.50 | 0.00 | 3.62 |
688 | 752 | 4.082733 | GGCAAAGGTAAACATCTGAGGTTC | 60.083 | 45.833 | 8.26 | 0.00 | 0.00 | 3.62 |
689 | 753 | 3.826729 | GGCAAAGGTAAACATCTGAGGTT | 59.173 | 43.478 | 1.25 | 1.25 | 0.00 | 3.50 |
690 | 754 | 3.181434 | TGGCAAAGGTAAACATCTGAGGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
691 | 755 | 3.420893 | TGGCAAAGGTAAACATCTGAGG | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
692 | 756 | 5.649782 | AATGGCAAAGGTAAACATCTGAG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 3.35 |
693 | 757 | 6.418057 | AAAATGGCAAAGGTAAACATCTGA | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
719 | 783 | 5.209977 | GGTTGACAAGATTGGTAACGAAAC | 58.790 | 41.667 | 0.00 | 0.00 | 42.51 | 2.78 |
724 | 789 | 5.957842 | TCATGGTTGACAAGATTGGTAAC | 57.042 | 39.130 | 0.00 | 2.34 | 0.00 | 2.50 |
731 | 796 | 8.847196 | CATCTAAATCATCATGGTTGACAAGAT | 58.153 | 33.333 | 0.00 | 4.20 | 37.98 | 2.40 |
738 | 803 | 9.406828 | CATTAAGCATCTAAATCATCATGGTTG | 57.593 | 33.333 | 5.65 | 0.00 | 37.49 | 3.77 |
758 | 823 | 8.996651 | AATAAACTAGGTGGAATCCCATTAAG | 57.003 | 34.615 | 0.00 | 0.00 | 45.68 | 1.85 |
759 | 824 | 8.002459 | GGAATAAACTAGGTGGAATCCCATTAA | 58.998 | 37.037 | 0.00 | 0.00 | 45.68 | 1.40 |
766 | 831 | 6.238759 | GCACATGGAATAAACTAGGTGGAATC | 60.239 | 42.308 | 0.00 | 0.00 | 34.60 | 2.52 |
832 | 899 | 2.621526 | ACGAGTGACACTGTGACATACA | 59.378 | 45.455 | 14.14 | 3.91 | 37.78 | 2.29 |
833 | 900 | 3.284323 | ACGAGTGACACTGTGACATAC | 57.716 | 47.619 | 14.14 | 11.19 | 0.00 | 2.39 |
834 | 901 | 3.638484 | CAACGAGTGACACTGTGACATA | 58.362 | 45.455 | 14.14 | 0.00 | 0.00 | 2.29 |
835 | 902 | 2.473816 | CAACGAGTGACACTGTGACAT | 58.526 | 47.619 | 14.14 | 5.01 | 0.00 | 3.06 |
836 | 903 | 1.921243 | CAACGAGTGACACTGTGACA | 58.079 | 50.000 | 14.14 | 12.09 | 0.00 | 3.58 |
837 | 904 | 0.577269 | GCAACGAGTGACACTGTGAC | 59.423 | 55.000 | 14.14 | 9.21 | 0.00 | 3.67 |
838 | 905 | 0.459899 | AGCAACGAGTGACACTGTGA | 59.540 | 50.000 | 14.14 | 0.00 | 0.00 | 3.58 |
839 | 906 | 2.054363 | CTAGCAACGAGTGACACTGTG | 58.946 | 52.381 | 14.14 | 6.19 | 0.00 | 3.66 |
840 | 907 | 1.681793 | ACTAGCAACGAGTGACACTGT | 59.318 | 47.619 | 14.14 | 8.73 | 0.00 | 3.55 |
841 | 908 | 2.423926 | ACTAGCAACGAGTGACACTG | 57.576 | 50.000 | 14.14 | 8.08 | 0.00 | 3.66 |
842 | 909 | 3.454371 | AAACTAGCAACGAGTGACACT | 57.546 | 42.857 | 8.12 | 8.12 | 0.00 | 3.55 |
843 | 910 | 4.921515 | TGATAAACTAGCAACGAGTGACAC | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
844 | 911 | 5.128992 | TGATAAACTAGCAACGAGTGACA | 57.871 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
845 | 912 | 4.031878 | GCTGATAAACTAGCAACGAGTGAC | 59.968 | 45.833 | 0.00 | 0.00 | 39.67 | 3.67 |
846 | 913 | 4.082190 | AGCTGATAAACTAGCAACGAGTGA | 60.082 | 41.667 | 0.00 | 0.00 | 42.29 | 3.41 |
847 | 914 | 4.177026 | AGCTGATAAACTAGCAACGAGTG | 58.823 | 43.478 | 0.00 | 0.00 | 42.29 | 3.51 |
848 | 915 | 4.457834 | AGCTGATAAACTAGCAACGAGT | 57.542 | 40.909 | 0.00 | 0.00 | 42.29 | 4.18 |
849 | 916 | 7.340699 | CAAATAGCTGATAAACTAGCAACGAG | 58.659 | 38.462 | 0.00 | 0.00 | 42.29 | 4.18 |
850 | 917 | 6.257849 | CCAAATAGCTGATAAACTAGCAACGA | 59.742 | 38.462 | 0.00 | 0.00 | 42.29 | 3.85 |
851 | 918 | 6.257849 | TCCAAATAGCTGATAAACTAGCAACG | 59.742 | 38.462 | 0.00 | 0.00 | 42.29 | 4.10 |
852 | 919 | 7.553881 | TCCAAATAGCTGATAAACTAGCAAC | 57.446 | 36.000 | 0.00 | 0.00 | 42.29 | 4.17 |
853 | 920 | 8.574251 | TTTCCAAATAGCTGATAAACTAGCAA | 57.426 | 30.769 | 0.00 | 0.00 | 42.29 | 3.91 |
857 | 924 | 9.905713 | ACTCATTTCCAAATAGCTGATAAACTA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
864 | 931 | 5.124457 | GCAAGACTCATTTCCAAATAGCTGA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
866 | 933 | 4.400567 | GGCAAGACTCATTTCCAAATAGCT | 59.599 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
873 | 940 | 2.373169 | AGAGTGGCAAGACTCATTTCCA | 59.627 | 45.455 | 11.15 | 0.00 | 44.25 | 3.53 |
874 | 941 | 3.064900 | AGAGTGGCAAGACTCATTTCC | 57.935 | 47.619 | 11.15 | 0.00 | 44.25 | 3.13 |
879 | 946 | 1.620819 | GAGGAAGAGTGGCAAGACTCA | 59.379 | 52.381 | 11.15 | 0.00 | 44.25 | 3.41 |
880 | 947 | 1.899142 | AGAGGAAGAGTGGCAAGACTC | 59.101 | 52.381 | 0.00 | 0.00 | 42.45 | 3.36 |
882 | 949 | 2.810852 | CAAAGAGGAAGAGTGGCAAGAC | 59.189 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
896 | 964 | 6.017400 | ACAACATAGTCAAATGCAAAGAGG | 57.983 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
923 | 991 | 5.425217 | TCCACATATTTCTGCTGAGGAGTAA | 59.575 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
924 | 992 | 4.962362 | TCCACATATTTCTGCTGAGGAGTA | 59.038 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
928 | 996 | 4.885907 | ACATTCCACATATTTCTGCTGAGG | 59.114 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
930 | 998 | 6.543465 | CCTTACATTCCACATATTTCTGCTGA | 59.457 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
936 | 1004 | 6.828785 | AGGTCACCTTACATTCCACATATTTC | 59.171 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
937 | 1005 | 6.731467 | AGGTCACCTTACATTCCACATATTT | 58.269 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
939 | 1007 | 5.975988 | AGGTCACCTTACATTCCACATAT | 57.024 | 39.130 | 0.00 | 0.00 | 0.00 | 1.78 |
940 | 1008 | 5.772393 | AAGGTCACCTTACATTCCACATA | 57.228 | 39.130 | 7.55 | 0.00 | 42.74 | 2.29 |
941 | 1009 | 4.657814 | AAGGTCACCTTACATTCCACAT | 57.342 | 40.909 | 7.55 | 0.00 | 42.74 | 3.21 |
942 | 1010 | 4.595781 | ACTAAGGTCACCTTACATTCCACA | 59.404 | 41.667 | 12.72 | 0.00 | 42.74 | 4.17 |
943 | 1011 | 5.161943 | ACTAAGGTCACCTTACATTCCAC | 57.838 | 43.478 | 12.72 | 0.00 | 42.74 | 4.02 |
944 | 1012 | 6.938698 | TTACTAAGGTCACCTTACATTCCA | 57.061 | 37.500 | 12.72 | 0.00 | 42.74 | 3.53 |
946 | 1014 | 9.668497 | AAAGATTACTAAGGTCACCTTACATTC | 57.332 | 33.333 | 12.72 | 9.09 | 42.74 | 2.67 |
947 | 1015 | 9.449719 | CAAAGATTACTAAGGTCACCTTACATT | 57.550 | 33.333 | 12.72 | 2.80 | 42.74 | 2.71 |
948 | 1016 | 8.603304 | ACAAAGATTACTAAGGTCACCTTACAT | 58.397 | 33.333 | 12.72 | 6.53 | 42.74 | 2.29 |
949 | 1017 | 7.876068 | CACAAAGATTACTAAGGTCACCTTACA | 59.124 | 37.037 | 12.72 | 0.59 | 42.74 | 2.41 |
953 | 1021 | 5.246307 | GCACAAAGATTACTAAGGTCACCT | 58.754 | 41.667 | 0.00 | 0.00 | 33.87 | 4.00 |
954 | 1022 | 4.395231 | GGCACAAAGATTACTAAGGTCACC | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
958 | 1026 | 7.345914 | AGAGATAGGCACAAAGATTACTAAGGT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 3.50 |
959 | 1027 | 7.655328 | CAGAGATAGGCACAAAGATTACTAAGG | 59.345 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
964 | 1032 | 6.926272 | CCTACAGAGATAGGCACAAAGATTAC | 59.074 | 42.308 | 0.00 | 0.00 | 35.54 | 1.89 |
965 | 1033 | 6.611642 | ACCTACAGAGATAGGCACAAAGATTA | 59.388 | 38.462 | 0.00 | 0.00 | 45.08 | 1.75 |
979 | 1047 | 3.995636 | TCCTTGCCTAACCTACAGAGAT | 58.004 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
1095 | 1163 | 4.161189 | ACGATGAGGAACTTGATGATCACT | 59.839 | 41.667 | 0.00 | 0.00 | 41.55 | 3.41 |
1391 | 1462 | 7.701924 | GCAGTGAAATAAACAAGCATAGCATAA | 59.298 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
1393 | 1464 | 6.038356 | GCAGTGAAATAAACAAGCATAGCAT | 58.962 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1394 | 1465 | 5.048154 | TGCAGTGAAATAAACAAGCATAGCA | 60.048 | 36.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1395 | 1466 | 5.401550 | TGCAGTGAAATAAACAAGCATAGC | 58.598 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
1397 | 1468 | 7.381948 | CAGTTTGCAGTGAAATAAACAAGCATA | 59.618 | 33.333 | 0.00 | 0.00 | 35.93 | 3.14 |
1398 | 1469 | 6.201425 | CAGTTTGCAGTGAAATAAACAAGCAT | 59.799 | 34.615 | 0.00 | 0.00 | 35.93 | 3.79 |
1401 | 1472 | 6.531240 | ACACAGTTTGCAGTGAAATAAACAAG | 59.469 | 34.615 | 10.48 | 0.00 | 39.03 | 3.16 |
1446 | 1526 | 4.547532 | AGTCGTAGTTCACAGTTCATGAC | 58.452 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1460 | 1540 | 5.414144 | GGTAGTTACTTGGAAGAGTCGTAGT | 59.586 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1462 | 1542 | 5.182001 | GTGGTAGTTACTTGGAAGAGTCGTA | 59.818 | 44.000 | 0.00 | 0.00 | 0.00 | 3.43 |
1478 | 1559 | 7.639378 | ACTTGGTTATAATGATGGTGGTAGTT | 58.361 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1480 | 1561 | 8.519799 | AAACTTGGTTATAATGATGGTGGTAG | 57.480 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1482 | 1563 | 9.131791 | GATAAACTTGGTTATAATGATGGTGGT | 57.868 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
1483 | 1564 | 9.354673 | AGATAAACTTGGTTATAATGATGGTGG | 57.645 | 33.333 | 0.00 | 0.00 | 0.00 | 4.61 |
1755 | 1840 | 3.659444 | CGACTCGAAATTCAAAAGTGCAC | 59.341 | 43.478 | 9.40 | 9.40 | 0.00 | 4.57 |
1764 | 1849 | 2.602878 | GCAGGTACGACTCGAAATTCA | 58.397 | 47.619 | 5.20 | 0.00 | 0.00 | 2.57 |
1771 | 1856 | 1.939785 | GCATCGCAGGTACGACTCG | 60.940 | 63.158 | 0.00 | 0.00 | 46.28 | 4.18 |
1773 | 1858 | 1.676678 | ATGGCATCGCAGGTACGACT | 61.677 | 55.000 | 0.00 | 0.00 | 46.28 | 4.18 |
1777 | 1862 | 0.248621 | GCAAATGGCATCGCAGGTAC | 60.249 | 55.000 | 14.88 | 0.00 | 43.97 | 3.34 |
1789 | 1874 | 0.950836 | TGACACAAGGACGCAAATGG | 59.049 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1790 | 1875 | 2.030893 | ACATGACACAAGGACGCAAATG | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
1791 | 1876 | 2.030893 | CACATGACACAAGGACGCAAAT | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
1793 | 1878 | 0.943673 | CACATGACACAAGGACGCAA | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1796 | 1881 | 1.581934 | ACACACATGACACAAGGACG | 58.418 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1797 | 1882 | 3.694734 | CAAACACACATGACACAAGGAC | 58.305 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1799 | 1884 | 2.099592 | AGCAAACACACATGACACAAGG | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
1800 | 1885 | 3.425577 | AGCAAACACACATGACACAAG | 57.574 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1801 | 1886 | 3.243035 | GCTAGCAAACACACATGACACAA | 60.243 | 43.478 | 10.63 | 0.00 | 0.00 | 3.33 |
1833 | 1936 | 2.131183 | CGCAGCTCCAGAAATACTAGC | 58.869 | 52.381 | 0.00 | 0.00 | 32.21 | 3.42 |
1865 | 1971 | 2.038557 | ACTGGCTAATAATACCCCTGCG | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1872 | 1978 | 7.671302 | TCAAGATCCAGACTGGCTAATAATAC | 58.329 | 38.462 | 17.33 | 0.00 | 37.47 | 1.89 |
1884 | 1990 | 3.133721 | GCACCATACTCAAGATCCAGACT | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
1903 | 2009 | 5.569059 | CGACAAATGAAAAGATAACAGGCAC | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1905 | 2011 | 4.558860 | GCGACAAATGAAAAGATAACAGGC | 59.441 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1907 | 2013 | 9.559958 | AAATAGCGACAAATGAAAAGATAACAG | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
1908 | 2014 | 9.906660 | AAAATAGCGACAAATGAAAAGATAACA | 57.093 | 25.926 | 0.00 | 0.00 | 0.00 | 2.41 |
1912 | 2018 | 6.311200 | GCCAAAATAGCGACAAATGAAAAGAT | 59.689 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
1914 | 2020 | 5.404968 | TGCCAAAATAGCGACAAATGAAAAG | 59.595 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1915 | 2021 | 5.292765 | TGCCAAAATAGCGACAAATGAAAA | 58.707 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1917 | 2025 | 4.511617 | TGCCAAAATAGCGACAAATGAA | 57.488 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
1920 | 2028 | 3.119029 | AGCATGCCAAAATAGCGACAAAT | 60.119 | 39.130 | 15.66 | 0.00 | 0.00 | 2.32 |
1927 | 2035 | 2.542595 | GCAATCAGCATGCCAAAATAGC | 59.457 | 45.455 | 15.66 | 6.73 | 44.79 | 2.97 |
1938 | 2046 | 8.922336 | CGTAGATACGGAGAAGCAATCAGCAT | 62.922 | 46.154 | 4.48 | 0.00 | 45.32 | 3.79 |
1939 | 2047 | 7.717351 | CGTAGATACGGAGAAGCAATCAGCA | 62.717 | 48.000 | 4.48 | 0.00 | 45.32 | 4.41 |
1941 | 2049 | 4.222886 | CGTAGATACGGAGAAGCAATCAG | 58.777 | 47.826 | 4.48 | 0.00 | 45.30 | 2.90 |
1955 | 2105 | 5.853282 | GGCATTCAAAATGATGCGTAGATAC | 59.147 | 40.000 | 3.91 | 0.00 | 40.65 | 2.24 |
1959 | 2109 | 4.285292 | GAGGCATTCAAAATGATGCGTAG | 58.715 | 43.478 | 3.91 | 0.00 | 40.65 | 3.51 |
1962 | 2112 | 2.159212 | TGGAGGCATTCAAAATGATGCG | 60.159 | 45.455 | 3.91 | 0.00 | 40.65 | 4.73 |
1963 | 2113 | 3.530265 | TGGAGGCATTCAAAATGATGC | 57.470 | 42.857 | 3.91 | 0.00 | 39.15 | 3.91 |
1964 | 2114 | 5.694910 | GCTAATGGAGGCATTCAAAATGATG | 59.305 | 40.000 | 3.91 | 0.00 | 0.00 | 3.07 |
1965 | 2115 | 5.601313 | AGCTAATGGAGGCATTCAAAATGAT | 59.399 | 36.000 | 3.91 | 0.00 | 0.00 | 2.45 |
1982 | 2132 | 8.133627 | CACCAAATAAGATTCTTCCAGCTAATG | 58.866 | 37.037 | 1.27 | 0.00 | 0.00 | 1.90 |
2029 | 2179 | 7.602265 | TGCTAAAAGAAACATGAATTTTAGGGC | 59.398 | 33.333 | 22.51 | 16.43 | 41.91 | 5.19 |
2062 | 2219 | 6.875195 | CCATCACAAAGCTCCAATAACAATTT | 59.125 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2063 | 2220 | 6.400568 | CCATCACAAAGCTCCAATAACAATT | 58.599 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2076 | 2233 | 3.193267 | TGTGGAAATAGCCATCACAAAGC | 59.807 | 43.478 | 0.00 | 0.00 | 40.68 | 3.51 |
2085 | 2253 | 2.772077 | TAAGCGTGTGGAAATAGCCA | 57.228 | 45.000 | 0.00 | 0.00 | 35.02 | 4.75 |
2089 | 2257 | 7.450124 | TGGTTTAAATAAGCGTGTGGAAATA | 57.550 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2111 | 2279 | 6.515200 | GCTTCATGGAGAAATCTCATCAATGG | 60.515 | 42.308 | 4.75 | 0.00 | 44.60 | 3.16 |
2117 | 2285 | 5.104444 | AGACTGCTTCATGGAGAAATCTCAT | 60.104 | 40.000 | 4.75 | 2.05 | 44.60 | 2.90 |
2118 | 2286 | 4.224594 | AGACTGCTTCATGGAGAAATCTCA | 59.775 | 41.667 | 4.75 | 0.00 | 44.60 | 3.27 |
2119 | 2287 | 4.768583 | AGACTGCTTCATGGAGAAATCTC | 58.231 | 43.478 | 4.75 | 1.68 | 42.14 | 2.75 |
2120 | 2288 | 4.840716 | AGACTGCTTCATGGAGAAATCT | 57.159 | 40.909 | 4.75 | 0.00 | 37.57 | 2.40 |
2135 | 2315 | 9.928236 | CTAAATAATAGAAGCTTCAAAGACTGC | 57.072 | 33.333 | 27.57 | 0.00 | 0.00 | 4.40 |
2170 | 2350 | 5.705441 | TGAAGGAAGTTTATCATTCGCTGTT | 59.295 | 36.000 | 0.00 | 0.00 | 41.67 | 3.16 |
2172 | 2352 | 5.122239 | TGTGAAGGAAGTTTATCATTCGCTG | 59.878 | 40.000 | 13.91 | 0.00 | 45.69 | 5.18 |
2173 | 2353 | 5.245531 | TGTGAAGGAAGTTTATCATTCGCT | 58.754 | 37.500 | 13.91 | 0.00 | 45.69 | 4.93 |
2178 | 2358 | 9.699410 | TCCAATATTGTGAAGGAAGTTTATCAT | 57.301 | 29.630 | 14.25 | 0.00 | 0.00 | 2.45 |
2179 | 2359 | 9.177608 | CTCCAATATTGTGAAGGAAGTTTATCA | 57.822 | 33.333 | 14.25 | 0.00 | 0.00 | 2.15 |
2180 | 2360 | 9.178758 | ACTCCAATATTGTGAAGGAAGTTTATC | 57.821 | 33.333 | 14.25 | 0.00 | 0.00 | 1.75 |
2181 | 2361 | 9.178758 | GACTCCAATATTGTGAAGGAAGTTTAT | 57.821 | 33.333 | 14.25 | 0.00 | 0.00 | 1.40 |
2187 | 2367 | 7.829211 | CCTTAAGACTCCAATATTGTGAAGGAA | 59.171 | 37.037 | 14.25 | 0.44 | 0.00 | 3.36 |
2190 | 2370 | 8.202745 | GTCCTTAAGACTCCAATATTGTGAAG | 57.797 | 38.462 | 14.25 | 10.52 | 42.69 | 3.02 |
2272 | 2452 | 2.202797 | CATGCCCAGACGAGACCG | 60.203 | 66.667 | 0.00 | 0.00 | 42.50 | 4.79 |
2548 | 2745 | 0.323451 | GAGGGGCGAAAAGGGAACAT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.