Multiple sequence alignment - TraesCS1B01G294800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G294800 chr1B 100.000 4347 0 0 1 4347 512641315 512636969 0.000000e+00 8028.0
1 TraesCS1B01G294800 chr1B 90.516 1086 56 21 764 1822 512693008 512691943 0.000000e+00 1391.0
2 TraesCS1B01G294800 chr1B 89.293 495 46 6 2856 3347 512691071 512690581 7.990000e-172 614.0
3 TraesCS1B01G294800 chr1B 81.455 275 42 9 2434 2703 512691500 512691230 2.630000e-52 217.0
4 TraesCS1B01G294800 chr1B 98.305 118 2 0 1845 1962 389309874 389309757 1.580000e-49 207.0
5 TraesCS1B01G294800 chr1B 91.549 71 3 1 3614 3681 512637636 512637566 1.290000e-15 95.3
6 TraesCS1B01G294800 chr1B 91.549 71 3 1 3680 3750 512637702 512637635 1.290000e-15 95.3
7 TraesCS1B01G294800 chr1B 96.226 53 2 0 1959 2011 512691791 512691739 2.150000e-13 87.9
8 TraesCS1B01G294800 chr1A 91.377 1264 85 10 2434 3681 482781901 482780646 0.000000e+00 1709.0
9 TraesCS1B01G294800 chr1A 91.018 835 51 9 992 1822 482783234 482782420 0.000000e+00 1105.0
10 TraesCS1B01G294800 chr1A 90.896 670 25 11 3680 4347 482780713 482780078 0.000000e+00 867.0
11 TraesCS1B01G294800 chr1A 92.787 305 18 4 1961 2264 482782227 482781926 5.160000e-119 438.0
12 TraesCS1B01G294800 chr1A 87.645 259 16 13 692 935 482783509 482783252 1.980000e-73 287.0
13 TraesCS1B01G294800 chr1D 91.674 1117 64 9 2434 3536 382728349 382727248 0.000000e+00 1520.0
14 TraesCS1B01G294800 chr1D 89.768 1163 71 19 690 1822 382729992 382728848 0.000000e+00 1445.0
15 TraesCS1B01G294800 chr1D 95.821 670 21 4 1 668 382732152 382731488 0.000000e+00 1075.0
16 TraesCS1B01G294800 chr1D 90.162 681 32 11 3680 4347 382726524 382725866 0.000000e+00 854.0
17 TraesCS1B01G294800 chr1D 83.974 312 29 16 1960 2257 382728695 382728391 3.310000e-71 279.0
18 TraesCS1B01G294800 chr1D 94.118 153 8 1 3529 3681 382726609 382726458 9.400000e-57 231.0
19 TraesCS1B01G294800 chr3A 92.593 162 9 3 2259 2418 625536909 625536749 3.380000e-56 230.0
20 TraesCS1B01G294800 chr5A 91.463 164 12 2 2257 2418 320214407 320214244 1.570000e-54 224.0
21 TraesCS1B01G294800 chr6B 90.964 166 11 4 2257 2419 132353414 132353578 2.040000e-53 220.0
22 TraesCS1B01G294800 chr5B 90.964 166 12 3 2256 2418 607838555 607838390 2.040000e-53 220.0
23 TraesCS1B01G294800 chr5B 97.500 120 3 0 1843 1962 493651425 493651544 5.700000e-49 206.0
24 TraesCS1B01G294800 chr5B 92.254 142 8 3 1843 1982 522656737 522656877 9.540000e-47 198.0
25 TraesCS1B01G294800 chr4D 90.533 169 12 4 2259 2424 34661527 34661694 2.040000e-53 220.0
26 TraesCS1B01G294800 chr3D 91.358 162 12 2 2259 2418 87926161 87926000 2.040000e-53 220.0
27 TraesCS1B01G294800 chr3D 97.581 124 3 0 1841 1964 7308052 7308175 3.410000e-51 213.0
28 TraesCS1B01G294800 chr5D 90.058 171 13 4 2253 2420 12270334 12270503 7.320000e-53 219.0
29 TraesCS1B01G294800 chr5D 96.800 125 4 0 1840 1964 30459066 30459190 4.410000e-50 209.0
30 TraesCS1B01G294800 chr6A 89.714 175 11 6 2252 2421 531524775 531524947 2.630000e-52 217.0
31 TraesCS1B01G294800 chr4B 90.854 164 12 3 2257 2418 532435164 532435002 2.630000e-52 217.0
32 TraesCS1B01G294800 chr7D 96.774 124 3 1 1842 1964 600970965 600971088 5.700000e-49 206.0
33 TraesCS1B01G294800 chr7D 93.284 134 8 1 1840 1972 123785080 123784947 3.430000e-46 196.0
34 TraesCS1B01G294800 chr7D 95.082 122 6 0 1841 1962 8562086 8561965 4.440000e-45 193.0
35 TraesCS1B01G294800 chr3B 96.774 124 3 1 1840 1963 765875468 765875590 5.700000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G294800 chr1B 512636969 512641315 4346 True 2739.533333 8028 94.3660 1 4347 3 chr1B.!!$R2 4346
1 TraesCS1B01G294800 chr1B 512690581 512693008 2427 True 577.475000 1391 89.3725 764 3347 4 chr1B.!!$R3 2583
2 TraesCS1B01G294800 chr1A 482780078 482783509 3431 True 881.200000 1709 90.7446 692 4347 5 chr1A.!!$R1 3655
3 TraesCS1B01G294800 chr1D 382725866 382732152 6286 True 900.666667 1520 90.9195 1 4347 6 chr1D.!!$R1 4346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 476 0.171007 CTAAAATGCCGCACCCACAG 59.829 55.0 0.00 0.0 0.00 3.66 F
1863 3565 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
1949 3651 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.0 0.00 0.0 41.36 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 3632 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.0 0.00 0.0 44.93 4.30 R
2820 4586 0.185901 AACTGAGGTGCAATGGTGGT 59.814 50.0 0.00 0.0 0.00 4.16 R
3563 6018 0.237235 TTGCGCAACGTCTTCATTCC 59.763 50.0 21.02 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.524541 TGATGTTCGTGAGATCACCATG 58.475 45.455 7.37 0.00 42.08 3.66
44 45 3.055167 TGTTCGTGAGATCACCATGGATT 60.055 43.478 21.47 1.59 43.66 3.01
185 186 8.716674 ACAATGAATATTCAATTATGAGCCCT 57.283 30.769 21.50 0.00 41.13 5.19
207 208 1.198637 GCTCATCTGCACAAGGTGAAC 59.801 52.381 0.00 0.00 45.59 3.18
208 209 2.497138 CTCATCTGCACAAGGTGAACA 58.503 47.619 0.00 0.00 45.59 3.18
279 282 1.063174 GCATGGAAGATGTTCGAGTGC 59.937 52.381 8.83 8.83 32.92 4.40
298 301 1.895051 CGTGATGTTCGGGCAAAATC 58.105 50.000 0.00 0.00 0.00 2.17
299 302 1.467374 CGTGATGTTCGGGCAAAATCC 60.467 52.381 0.00 0.00 0.00 3.01
300 303 1.543802 GTGATGTTCGGGCAAAATCCA 59.456 47.619 0.00 0.00 0.00 3.41
302 305 2.630098 TGATGTTCGGGCAAAATCCAAA 59.370 40.909 0.00 0.00 0.00 3.28
344 347 2.481969 CGGATGTCCAGACACGATGAAT 60.482 50.000 1.88 0.00 45.05 2.57
354 357 1.068610 ACACGATGAATTTTGGCACGG 60.069 47.619 0.00 0.00 0.00 4.94
385 388 8.177663 CACGCACTTAAACATCTTCTATCAATT 58.822 33.333 0.00 0.00 0.00 2.32
386 389 8.730680 ACGCACTTAAACATCTTCTATCAATTT 58.269 29.630 0.00 0.00 0.00 1.82
387 390 9.559958 CGCACTTAAACATCTTCTATCAATTTT 57.440 29.630 0.00 0.00 0.00 1.82
456 459 2.037367 AGGTGCACCCGAGAGCTA 59.963 61.111 32.29 0.00 38.74 3.32
463 466 1.017387 CACCCGAGAGCTAAAATGCC 58.983 55.000 0.00 0.00 0.00 4.40
473 476 0.171007 CTAAAATGCCGCACCCACAG 59.829 55.000 0.00 0.00 0.00 3.66
686 2172 9.594038 GTTTGCAATCAACACTAATATATACGG 57.406 33.333 0.00 0.00 30.75 4.02
687 2173 9.549078 TTTGCAATCAACACTAATATATACGGA 57.451 29.630 0.00 0.00 30.75 4.69
688 2174 8.757164 TGCAATCAACACTAATATATACGGAG 57.243 34.615 0.00 0.00 0.00 4.63
777 2263 8.375608 TGTAATGTCAAATTTCAACCCATTTG 57.624 30.769 0.00 0.00 40.39 2.32
781 2268 5.587844 TGTCAAATTTCAACCCATTTGTTGG 59.412 36.000 4.28 0.00 44.51 3.77
818 2313 1.602311 GCATCATCGCCCTTCTTCAT 58.398 50.000 0.00 0.00 0.00 2.57
834 2329 0.613260 TCATTCCTCCCGTCCACTTG 59.387 55.000 0.00 0.00 0.00 3.16
988 2499 3.695606 AGCGGCGAGAAGGAAGCA 61.696 61.111 12.98 0.00 0.00 3.91
1080 2591 1.655114 AACCAAACCACCTCCCAGCT 61.655 55.000 0.00 0.00 0.00 4.24
1117 2637 3.279434 ACAGTTGAATTCCCTAATCGCC 58.721 45.455 2.27 0.00 0.00 5.54
1119 2639 4.163458 ACAGTTGAATTCCCTAATCGCCTA 59.837 41.667 2.27 0.00 0.00 3.93
1434 2961 2.105128 CCGTCGGTGAGAGGATGC 59.895 66.667 2.08 0.00 36.91 3.91
1447 2974 1.000731 GAGGATGCACTGCTAGCTAGG 59.999 57.143 22.10 9.03 0.00 3.02
1464 2991 5.353111 AGCTAGGCTTAATTTCGTCTTCTC 58.647 41.667 0.00 0.00 33.89 2.87
1469 2996 4.254492 GCTTAATTTCGTCTTCTCCTGGT 58.746 43.478 0.00 0.00 0.00 4.00
1478 3005 2.108425 GTCTTCTCCTGGTTTTTCCCCT 59.892 50.000 0.00 0.00 34.77 4.79
1492 3021 0.322456 TCCCCTTTTGGCGATGTGAG 60.322 55.000 0.00 0.00 38.58 3.51
1535 3064 4.370917 CTTTTGGTTGTTCAGGATTGGTG 58.629 43.478 0.00 0.00 0.00 4.17
1654 3183 1.951602 ACCAACGGCCTTAACAAGTTC 59.048 47.619 0.00 0.00 0.00 3.01
1663 3196 2.412089 CCTTAACAAGTTCCTTCGCTCG 59.588 50.000 0.00 0.00 0.00 5.03
1674 3207 4.500603 TCCTTCGCTCGTCCTATATTTC 57.499 45.455 0.00 0.00 0.00 2.17
1704 3237 6.530120 TGTAGAGTTTGGCTGATAAGTTCAA 58.470 36.000 0.00 0.00 32.78 2.69
1737 3270 1.495579 ATGCAGGTTCAGGGCAGTCT 61.496 55.000 0.00 0.00 41.40 3.24
1783 3316 2.470990 TGGAGCATATCTGAGGTGTGT 58.529 47.619 0.00 0.00 0.00 3.72
1784 3317 2.169144 TGGAGCATATCTGAGGTGTGTG 59.831 50.000 0.00 0.00 0.00 3.82
1817 3519 8.548721 TCACTTCTCGTTTTCTCACTTTTTATC 58.451 33.333 0.00 0.00 0.00 1.75
1841 3543 6.989759 TCAGTTACTGTTCTGAAAGCATGTTA 59.010 34.615 12.41 0.00 37.69 2.41
1842 3544 7.497579 TCAGTTACTGTTCTGAAAGCATGTTAA 59.502 33.333 12.41 0.00 37.69 2.01
1843 3545 8.292448 CAGTTACTGTTCTGAAAGCATGTTAAT 58.708 33.333 3.88 0.00 34.02 1.40
1848 3550 9.672673 ACTGTTCTGAAAGCATGTTAATATACT 57.327 29.630 0.00 0.00 0.00 2.12
1850 3552 9.109393 TGTTCTGAAAGCATGTTAATATACTCC 57.891 33.333 0.00 0.00 0.00 3.85
1851 3553 8.560374 GTTCTGAAAGCATGTTAATATACTCCC 58.440 37.037 0.00 0.00 0.00 4.30
1852 3554 8.034313 TCTGAAAGCATGTTAATATACTCCCT 57.966 34.615 0.00 0.00 0.00 4.20
1853 3555 8.150945 TCTGAAAGCATGTTAATATACTCCCTC 58.849 37.037 0.00 0.00 0.00 4.30
1854 3556 7.224297 TGAAAGCATGTTAATATACTCCCTCC 58.776 38.462 0.00 0.00 0.00 4.30
1855 3557 5.407407 AGCATGTTAATATACTCCCTCCG 57.593 43.478 0.00 0.00 0.00 4.63
1856 3558 4.838986 AGCATGTTAATATACTCCCTCCGT 59.161 41.667 0.00 0.00 0.00 4.69
1857 3559 5.047235 AGCATGTTAATATACTCCCTCCGTC 60.047 44.000 0.00 0.00 0.00 4.79
1858 3560 5.721232 CATGTTAATATACTCCCTCCGTCC 58.279 45.833 0.00 0.00 0.00 4.79
1859 3561 3.822735 TGTTAATATACTCCCTCCGTCCG 59.177 47.826 0.00 0.00 0.00 4.79
1860 3562 1.920610 AATATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
1861 3563 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
1862 3564 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
1863 3565 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1864 3566 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1865 3567 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1866 3568 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1867 3569 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1868 3570 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1869 3571 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1870 3572 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1871 3573 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1872 3574 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
1873 3575 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
1874 3576 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
1875 3577 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
1876 3578 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
1877 3579 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
1878 3580 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
1879 3581 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
1880 3582 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
1881 3583 3.312697 GGAAATACTTGTCGGAGGAATGC 59.687 47.826 0.00 0.00 0.00 3.56
1882 3584 3.627395 AATACTTGTCGGAGGAATGCA 57.373 42.857 0.00 0.00 0.00 3.96
1883 3585 3.845781 ATACTTGTCGGAGGAATGCAT 57.154 42.857 0.00 0.00 0.00 3.96
1884 3586 4.955811 ATACTTGTCGGAGGAATGCATA 57.044 40.909 0.00 0.00 0.00 3.14
1885 3587 3.627395 ACTTGTCGGAGGAATGCATAA 57.373 42.857 0.00 0.00 0.00 1.90
1886 3588 3.950397 ACTTGTCGGAGGAATGCATAAA 58.050 40.909 0.00 0.00 0.00 1.40
1887 3589 4.331968 ACTTGTCGGAGGAATGCATAAAA 58.668 39.130 0.00 0.00 0.00 1.52
1888 3590 4.764823 ACTTGTCGGAGGAATGCATAAAAA 59.235 37.500 0.00 0.00 0.00 1.94
1889 3591 5.418840 ACTTGTCGGAGGAATGCATAAAAAT 59.581 36.000 0.00 0.00 0.00 1.82
1890 3592 5.247507 TGTCGGAGGAATGCATAAAAATG 57.752 39.130 0.00 0.00 0.00 2.32
1891 3593 4.946772 TGTCGGAGGAATGCATAAAAATGA 59.053 37.500 0.00 0.00 0.00 2.57
1892 3594 5.417266 TGTCGGAGGAATGCATAAAAATGAA 59.583 36.000 0.00 0.00 0.00 2.57
1893 3595 6.096705 TGTCGGAGGAATGCATAAAAATGAAT 59.903 34.615 0.00 0.00 0.00 2.57
1894 3596 6.418819 GTCGGAGGAATGCATAAAAATGAATG 59.581 38.462 0.00 0.00 0.00 2.67
1895 3597 6.096705 TCGGAGGAATGCATAAAAATGAATGT 59.903 34.615 0.00 0.00 0.00 2.71
1896 3598 7.284261 TCGGAGGAATGCATAAAAATGAATGTA 59.716 33.333 0.00 0.00 0.00 2.29
1897 3599 8.084073 CGGAGGAATGCATAAAAATGAATGTAT 58.916 33.333 0.00 0.00 30.86 2.29
1898 3600 9.415544 GGAGGAATGCATAAAAATGAATGTATC 57.584 33.333 0.00 0.00 29.57 2.24
1932 3634 9.781425 AAGATACATCTAGATACATCCATTCCT 57.219 33.333 16.61 1.84 35.76 3.36
1933 3635 9.420118 AGATACATCTAGATACATCCATTCCTC 57.580 37.037 16.61 0.00 34.85 3.71
1934 3636 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
1935 3637 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
1936 3638 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
1937 3639 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
1938 3640 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
1939 3641 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
1940 3642 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
1941 3643 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
1942 3644 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
1943 3645 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
1944 3646 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
1945 3647 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
1946 3648 3.067742 TCCATTCCTCCGACGAGTATTTC 59.932 47.826 0.00 0.00 33.93 2.17
1947 3649 3.381949 CATTCCTCCGACGAGTATTTCC 58.618 50.000 0.00 0.00 33.93 3.13
1948 3650 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
1949 3651 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
1950 3652 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
1951 3653 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
1952 3654 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
1953 3655 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
1954 3656 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
1955 3657 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
1956 3658 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
1957 3659 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
2001 3703 7.290014 TCTCTGAACCCATATATCTGTTGCTAA 59.710 37.037 1.99 0.00 0.00 3.09
2013 3715 8.908786 ATATCTGTTGCTAAGCTAATTTGCTA 57.091 30.769 14.79 0.00 43.24 3.49
2170 3910 3.377172 CGGCGATTACCTTTTGAGGAAAT 59.623 43.478 0.00 0.00 0.00 2.17
2192 3933 2.064762 CGGATGAGCAAGCATAGTAGC 58.935 52.381 0.00 0.00 0.00 3.58
2268 4009 6.392625 TCTTCACAAGATATACTTCCTCCG 57.607 41.667 0.00 0.00 36.61 4.63
2269 4010 5.892119 TCTTCACAAGATATACTTCCTCCGT 59.108 40.000 0.00 0.00 36.61 4.69
2270 4011 6.380274 TCTTCACAAGATATACTTCCTCCGTT 59.620 38.462 0.00 0.00 36.61 4.44
2271 4012 6.145338 TCACAAGATATACTTCCTCCGTTC 57.855 41.667 0.00 0.00 36.61 3.95
2272 4013 5.068723 TCACAAGATATACTTCCTCCGTTCC 59.931 44.000 0.00 0.00 36.61 3.62
2273 4014 4.960469 ACAAGATATACTTCCTCCGTTCCA 59.040 41.667 0.00 0.00 36.61 3.53
2274 4015 5.424252 ACAAGATATACTTCCTCCGTTCCAA 59.576 40.000 0.00 0.00 36.61 3.53
2275 4016 6.070424 ACAAGATATACTTCCTCCGTTCCAAA 60.070 38.462 0.00 0.00 36.61 3.28
2276 4017 6.749036 AGATATACTTCCTCCGTTCCAAAT 57.251 37.500 0.00 0.00 0.00 2.32
2277 4018 7.850935 AGATATACTTCCTCCGTTCCAAATA 57.149 36.000 0.00 0.00 0.00 1.40
2278 4019 8.437274 AGATATACTTCCTCCGTTCCAAATAT 57.563 34.615 0.00 0.00 0.00 1.28
2279 4020 9.543231 AGATATACTTCCTCCGTTCCAAATATA 57.457 33.333 0.00 0.00 0.00 0.86
2282 4023 6.309389 ACTTCCTCCGTTCCAAATATAAGT 57.691 37.500 0.00 0.00 0.00 2.24
2283 4024 6.346896 ACTTCCTCCGTTCCAAATATAAGTC 58.653 40.000 0.00 0.00 0.00 3.01
2284 4025 6.156429 ACTTCCTCCGTTCCAAATATAAGTCT 59.844 38.462 0.00 0.00 0.00 3.24
2285 4026 6.555463 TCCTCCGTTCCAAATATAAGTCTT 57.445 37.500 0.00 0.00 0.00 3.01
2286 4027 6.954232 TCCTCCGTTCCAAATATAAGTCTTT 58.046 36.000 0.00 0.00 0.00 2.52
2287 4028 7.399634 TCCTCCGTTCCAAATATAAGTCTTTT 58.600 34.615 0.00 0.00 0.00 2.27
2288 4029 7.886446 TCCTCCGTTCCAAATATAAGTCTTTTT 59.114 33.333 0.00 0.00 0.00 1.94
2289 4030 9.169592 CCTCCGTTCCAAATATAAGTCTTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
2291 4032 9.947433 TCCGTTCCAAATATAAGTCTTTTTAGA 57.053 29.630 0.00 0.00 0.00 2.10
2315 4056 9.006839 AGATATTTCAATACGGACTACATACGA 57.993 33.333 0.00 0.00 0.00 3.43
2316 4057 9.616634 GATATTTCAATACGGACTACATACGAA 57.383 33.333 0.00 0.00 0.00 3.85
2318 4059 7.688478 TTTCAATACGGACTACATACGAATG 57.312 36.000 0.00 0.00 39.17 2.67
2320 4061 7.495135 TCAATACGGACTACATACGAATGTA 57.505 36.000 0.00 0.00 44.66 2.29
2321 4062 8.102800 TCAATACGGACTACATACGAATGTAT 57.897 34.615 0.00 0.00 45.33 2.29
2322 4063 9.218440 TCAATACGGACTACATACGAATGTATA 57.782 33.333 0.00 0.00 45.33 1.47
2323 4064 9.999009 CAATACGGACTACATACGAATGTATAT 57.001 33.333 0.00 0.00 45.33 0.86
2327 4068 8.877779 ACGGACTACATACGAATGTATATAGAC 58.122 37.037 7.52 2.40 45.33 2.59
2328 4069 8.876790 CGGACTACATACGAATGTATATAGACA 58.123 37.037 2.07 2.07 45.33 3.41
2361 4102 9.717942 AGAGTATATATTCACTCATTTTGCTCC 57.282 33.333 15.06 0.00 42.99 4.70
2362 4103 8.539770 AGTATATATTCACTCATTTTGCTCCG 57.460 34.615 0.00 0.00 0.00 4.63
2363 4104 8.150945 AGTATATATTCACTCATTTTGCTCCGT 58.849 33.333 0.00 0.00 0.00 4.69
2364 4105 9.419297 GTATATATTCACTCATTTTGCTCCGTA 57.581 33.333 0.00 0.00 0.00 4.02
2366 4107 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2367 4108 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2368 4109 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2369 4110 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2370 4111 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2371 4112 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2372 4113 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
2373 4114 5.348986 TCATTTTGCTCCGTATGTAGTCTC 58.651 41.667 0.00 0.00 0.00 3.36
2374 4115 5.127194 TCATTTTGCTCCGTATGTAGTCTCT 59.873 40.000 0.00 0.00 0.00 3.10
2375 4116 6.320418 TCATTTTGCTCCGTATGTAGTCTCTA 59.680 38.462 0.00 0.00 0.00 2.43
2376 4117 6.710597 TTTTGCTCCGTATGTAGTCTCTAT 57.289 37.500 0.00 0.00 0.00 1.98
2377 4118 6.710597 TTTGCTCCGTATGTAGTCTCTATT 57.289 37.500 0.00 0.00 0.00 1.73
2378 4119 5.690997 TGCTCCGTATGTAGTCTCTATTG 57.309 43.478 0.00 0.00 0.00 1.90
2379 4120 5.374071 TGCTCCGTATGTAGTCTCTATTGA 58.626 41.667 0.00 0.00 0.00 2.57
2380 4121 5.826208 TGCTCCGTATGTAGTCTCTATTGAA 59.174 40.000 0.00 0.00 0.00 2.69
2381 4122 6.320418 TGCTCCGTATGTAGTCTCTATTGAAA 59.680 38.462 0.00 0.00 0.00 2.69
2382 4123 7.014326 TGCTCCGTATGTAGTCTCTATTGAAAT 59.986 37.037 0.00 0.00 0.00 2.17
2383 4124 7.539366 GCTCCGTATGTAGTCTCTATTGAAATC 59.461 40.741 0.00 0.00 0.00 2.17
2384 4125 8.693120 TCCGTATGTAGTCTCTATTGAAATCT 57.307 34.615 0.00 0.00 0.00 2.40
2385 4126 8.784994 TCCGTATGTAGTCTCTATTGAAATCTC 58.215 37.037 0.00 0.00 0.00 2.75
2386 4127 8.788806 CCGTATGTAGTCTCTATTGAAATCTCT 58.211 37.037 0.00 0.00 0.00 3.10
2466 4220 5.738693 CCACGCTTAATATGTTGTTGTCATG 59.261 40.000 0.00 0.00 0.00 3.07
2467 4221 6.314018 CACGCTTAATATGTTGTTGTCATGT 58.686 36.000 0.00 0.00 0.00 3.21
2549 4303 2.496070 TGACTTACCTCAGGTTCCATCG 59.504 50.000 0.00 0.00 37.09 3.84
2626 4381 4.679373 ATCTTATGAGTCATTGCTCGGT 57.321 40.909 11.68 0.00 38.28 4.69
2651 4407 7.477422 GTGCAAACATGTTAAAGTATACTCACG 59.523 37.037 12.39 0.00 0.00 4.35
2654 4410 4.802039 ACATGTTAAAGTATACTCACGGCG 59.198 41.667 4.80 4.80 0.00 6.46
2672 4428 4.171005 CGGCGTAAACTCAACTGATTAGA 58.829 43.478 0.00 0.00 0.00 2.10
2674 4430 5.220228 CGGCGTAAACTCAACTGATTAGAAG 60.220 44.000 0.00 0.00 0.00 2.85
2783 4549 9.159254 AGTCATATCCTATGTGAATTACTTCCA 57.841 33.333 0.00 0.00 32.05 3.53
2820 4586 1.073923 GCTCCCCTCTGGTTTTTCAGA 59.926 52.381 0.00 0.00 41.03 3.27
2821 4587 2.784347 CTCCCCTCTGGTTTTTCAGAC 58.216 52.381 0.00 0.00 38.70 3.51
2822 4588 1.423921 TCCCCTCTGGTTTTTCAGACC 59.576 52.381 0.00 0.00 38.70 3.85
2898 4695 2.557869 AGGTACACTGCCTTTATCCCA 58.442 47.619 0.00 0.00 31.04 4.37
3006 4803 5.824904 AATCTGATAATCCACTGTTGTGC 57.175 39.130 0.00 0.00 42.54 4.57
3007 4804 4.558226 TCTGATAATCCACTGTTGTGCT 57.442 40.909 0.00 0.00 42.54 4.40
3008 4805 4.256110 TCTGATAATCCACTGTTGTGCTG 58.744 43.478 0.00 0.00 42.54 4.41
3103 4900 2.235898 CCTCTACTCAGGCTTCTTTGCT 59.764 50.000 0.00 0.00 0.00 3.91
3151 4948 0.109643 TTGTGGTACGTCGATGTCGG 60.110 55.000 14.83 0.00 40.29 4.79
3156 4961 1.333881 GGTACGTCGATGTCGGATCAG 60.334 57.143 14.83 0.00 40.29 2.90
3157 4962 1.329906 GTACGTCGATGTCGGATCAGT 59.670 52.381 14.83 0.00 40.29 3.41
3178 4983 0.905357 AGACTGGATACACCCTGCAC 59.095 55.000 0.00 0.00 46.17 4.57
3322 5130 1.039856 GCAAGTCCAAGCTGGGAAAA 58.960 50.000 12.79 0.00 39.05 2.29
3324 5132 1.000171 CAAGTCCAAGCTGGGAAAAGC 60.000 52.381 12.79 0.00 43.88 3.51
3330 5138 3.070576 GCTGGGAAAAGCGGGCAT 61.071 61.111 0.00 0.00 32.56 4.40
3361 5169 3.504520 GGGCGTGAAAGAAATAGGTTCAA 59.495 43.478 0.00 0.00 38.86 2.69
3375 5183 1.068055 GGTTCAACTCAGCTGCCATTG 60.068 52.381 9.47 12.85 0.00 2.82
3382 5190 1.171549 TCAGCTGCCATTGTTTCGCA 61.172 50.000 9.47 0.00 0.00 5.10
3392 5201 3.121058 CCATTGTTTCGCAAAATTCGGTG 60.121 43.478 0.00 0.00 40.91 4.94
3396 5205 1.456196 TTCGCAAAATTCGGTGGGCA 61.456 50.000 0.00 0.00 0.00 5.36
3425 5234 2.044650 TGGGGATCTTGCAGCTGC 60.045 61.111 31.89 31.89 42.50 5.25
3439 5248 1.598962 GCTGCTGCAGTTGTGGAGA 60.599 57.895 28.50 0.00 44.77 3.71
3481 5290 7.171167 CAGCGAACTTACTATACTACTAGCAGA 59.829 40.741 0.00 0.00 0.00 4.26
3498 5307 2.689983 GCAGATTACTGGGGGTTGATTG 59.310 50.000 0.00 0.00 43.62 2.67
3520 5329 4.996122 TGCCTTTGGAACAGCAATTTATTG 59.004 37.500 0.00 0.00 42.39 1.90
3550 6005 4.482030 AGCAGACTGGTGATCTCTATCAT 58.518 43.478 6.31 0.00 43.87 2.45
3725 6180 5.366829 AAAAAGTACGGGACTATTTGTGC 57.633 39.130 0.00 0.00 37.44 4.57
3726 6181 3.688694 AAGTACGGGACTATTTGTGCA 57.311 42.857 0.00 0.00 37.44 4.57
3727 6182 3.247006 AGTACGGGACTATTTGTGCAG 57.753 47.619 0.00 0.00 38.87 4.41
3728 6183 1.664151 GTACGGGACTATTTGTGCAGC 59.336 52.381 0.00 0.00 38.87 5.25
3729 6184 0.324943 ACGGGACTATTTGTGCAGCT 59.675 50.000 0.00 0.00 38.87 4.24
3817 6279 8.442660 AATACCCCTGTTAATTTTCATTTCCA 57.557 30.769 0.00 0.00 0.00 3.53
3818 6280 6.358974 ACCCCTGTTAATTTTCATTTCCAG 57.641 37.500 0.00 0.00 0.00 3.86
3819 6281 6.081356 ACCCCTGTTAATTTTCATTTCCAGA 58.919 36.000 0.00 0.00 0.00 3.86
3820 6282 6.211384 ACCCCTGTTAATTTTCATTTCCAGAG 59.789 38.462 0.00 0.00 0.00 3.35
3821 6283 6.211384 CCCCTGTTAATTTTCATTTCCAGAGT 59.789 38.462 0.00 0.00 0.00 3.24
3822 6284 7.396055 CCCCTGTTAATTTTCATTTCCAGAGTA 59.604 37.037 0.00 0.00 0.00 2.59
3897 6360 8.899427 TGCCAATTATTTTTGAAGTGATTCAA 57.101 26.923 0.00 0.00 38.99 2.69
3963 6427 8.123639 AGTGAGAGCAAATAGTCTTACACTTA 57.876 34.615 0.00 0.00 36.43 2.24
4013 6477 5.502153 TTTTTAGAAAAGCGGCTGTACAA 57.498 34.783 1.81 0.00 0.00 2.41
4070 6534 1.485124 GTCCTAATTTTGGGCCCTGG 58.515 55.000 25.70 13.05 0.00 4.45
4103 6567 1.869767 GAAGCACACAGTCAGAACCAG 59.130 52.381 0.00 0.00 0.00 4.00
4161 6629 4.154347 GGCCAGTCTCCGCTCCTG 62.154 72.222 0.00 0.00 0.00 3.86
4162 6630 4.828925 GCCAGTCTCCGCTCCTGC 62.829 72.222 0.00 0.00 0.00 4.85
4163 6631 4.154347 CCAGTCTCCGCTCCTGCC 62.154 72.222 0.00 0.00 35.36 4.85
4164 6632 4.504916 CAGTCTCCGCTCCTGCCG 62.505 72.222 0.00 0.00 35.36 5.69
4270 6740 3.374402 CCGTCCCTGTCGCTCACT 61.374 66.667 0.00 0.00 0.00 3.41
4276 6746 0.179116 CCCTGTCGCTCACTCATCTG 60.179 60.000 0.00 0.00 0.00 2.90
4287 6757 4.216257 GCTCACTCATCTGCCTTTTGTTTA 59.784 41.667 0.00 0.00 0.00 2.01
4296 6766 4.396790 TCTGCCTTTTGTTTACGTTTCACT 59.603 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.512588 GAGAACTATCAATAAATCCATGGTGAT 57.487 33.333 12.58 14.28 0.00 3.06
40 41 7.740805 AGAGTGGGAGAACTATCAATAAATCC 58.259 38.462 0.00 0.00 0.00 3.01
44 45 7.841729 AGAGAAGAGTGGGAGAACTATCAATAA 59.158 37.037 0.00 0.00 0.00 1.40
185 186 0.607217 CACCTTGTGCAGATGAGCCA 60.607 55.000 0.00 0.00 0.00 4.75
262 265 0.317160 ACGCACTCGAACATCTTCCA 59.683 50.000 0.00 0.00 39.41 3.53
279 282 1.467374 GGATTTTGCCCGAACATCACG 60.467 52.381 0.00 0.00 0.00 4.35
298 301 6.730525 GAGTAGCTCTCAACAAACAAGTTTGG 60.731 42.308 24.52 11.58 45.60 3.28
299 302 6.195165 GAGTAGCTCTCAACAAACAAGTTTG 58.805 40.000 20.67 20.67 46.06 2.93
300 303 5.006746 CGAGTAGCTCTCAACAAACAAGTTT 59.993 40.000 11.93 0.00 42.88 2.66
302 305 4.051922 CGAGTAGCTCTCAACAAACAAGT 58.948 43.478 11.93 0.00 42.88 3.16
344 347 1.945522 CGTGATGTCCGTGCCAAAA 59.054 52.632 0.00 0.00 0.00 2.44
354 357 4.928661 AGATGTTTAAGTGCGTGATGTC 57.071 40.909 0.00 0.00 0.00 3.06
456 459 1.530419 TCTGTGGGTGCGGCATTTT 60.530 52.632 5.72 0.00 0.00 1.82
463 466 1.081242 GCAATTGTCTGTGGGTGCG 60.081 57.895 7.40 0.00 0.00 5.34
566 569 4.389374 AGACAACTCAATGTTTGGACGAT 58.611 39.130 0.00 0.00 36.63 3.73
626 629 3.085952 CCACAACATGGGATACACCTT 57.914 47.619 0.00 0.00 45.95 3.50
682 2168 9.991906 CCTTTCCAGAATAATAAATACTCCGTA 57.008 33.333 0.00 0.00 0.00 4.02
683 2169 8.491958 ACCTTTCCAGAATAATAAATACTCCGT 58.508 33.333 0.00 0.00 0.00 4.69
684 2170 8.904099 ACCTTTCCAGAATAATAAATACTCCG 57.096 34.615 0.00 0.00 0.00 4.63
688 2174 9.447040 GCGAAACCTTTCCAGAATAATAAATAC 57.553 33.333 0.00 0.00 33.68 1.89
689 2175 9.179909 TGCGAAACCTTTCCAGAATAATAAATA 57.820 29.630 0.00 0.00 33.68 1.40
690 2176 7.973944 GTGCGAAACCTTTCCAGAATAATAAAT 59.026 33.333 0.00 0.00 33.68 1.40
707 2193 1.002251 TCGGTCAAATTGTGCGAAACC 60.002 47.619 0.00 0.00 0.00 3.27
777 2263 5.861222 CCTTTTGGCATAATTTGACCAAC 57.139 39.130 5.51 0.00 39.58 3.77
818 2313 0.471211 ACTCAAGTGGACGGGAGGAA 60.471 55.000 0.00 0.00 0.00 3.36
834 2329 0.374410 GTCGCTCCTCGTCTGTACTC 59.626 60.000 0.00 0.00 39.67 2.59
860 2359 1.070758 GTTCTGTGGCTGAGGTTCTGA 59.929 52.381 0.00 0.00 0.00 3.27
1117 2637 0.754472 TACGGGCGGGAAGGAATTAG 59.246 55.000 0.00 0.00 0.00 1.73
1119 2639 1.222661 GTACGGGCGGGAAGGAATT 59.777 57.895 0.00 0.00 0.00 2.17
1426 2951 1.962807 CTAGCTAGCAGTGCATCCTCT 59.037 52.381 19.20 8.99 0.00 3.69
1434 2961 4.210120 CGAAATTAAGCCTAGCTAGCAGTG 59.790 45.833 18.83 5.23 38.25 3.66
1447 2974 4.254492 ACCAGGAGAAGACGAAATTAAGC 58.746 43.478 0.00 0.00 0.00 3.09
1464 2991 1.202758 GCCAAAAGGGGAAAAACCAGG 60.203 52.381 0.00 0.00 41.20 4.45
1469 2996 2.043227 ACATCGCCAAAAGGGGAAAAA 58.957 42.857 5.35 0.00 37.04 1.94
1478 3005 2.548057 GAGTCAACTCACATCGCCAAAA 59.452 45.455 5.28 0.00 42.42 2.44
1492 3021 0.166814 GCCAACGATGCAGAGTCAAC 59.833 55.000 0.00 0.00 0.00 3.18
1535 3064 4.699522 AGAAACGGCGAGGTGGGC 62.700 66.667 16.62 0.00 0.00 5.36
1622 3151 1.429825 CGTTGGTTGGTGCGTTCAA 59.570 52.632 0.00 0.00 0.00 2.69
1632 3161 1.679153 ACTTGTTAAGGCCGTTGGTTG 59.321 47.619 0.00 0.00 0.00 3.77
1654 3183 4.230657 CTGAAATATAGGACGAGCGAAGG 58.769 47.826 0.00 0.00 0.00 3.46
1663 3196 7.519032 ACTCTACAGAGCTGAAATATAGGAC 57.481 40.000 6.15 0.00 45.79 3.85
1674 3207 2.028658 TCAGCCAAACTCTACAGAGCTG 60.029 50.000 6.15 8.31 45.79 4.24
1737 3270 5.350365 GCCATAAACGTTATGAACACAGAGA 59.650 40.000 0.00 0.00 0.00 3.10
1783 3316 2.839486 AACGAGAAGTGATTCTGCCA 57.161 45.000 0.00 0.00 0.00 4.92
1784 3317 3.748568 AGAAAACGAGAAGTGATTCTGCC 59.251 43.478 0.00 0.00 37.99 4.85
1817 3519 5.679734 ACATGCTTTCAGAACAGTAACTG 57.320 39.130 0.00 0.00 37.52 3.16
1826 3528 8.494433 AGGGAGTATATTAACATGCTTTCAGAA 58.506 33.333 0.00 0.00 0.00 3.02
1841 3543 1.426598 TCCGGACGGAGGGAGTATATT 59.573 52.381 9.76 0.00 39.76 1.28
1842 3544 1.070604 TCCGGACGGAGGGAGTATAT 58.929 55.000 9.76 0.00 39.76 0.86
1843 3545 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
1847 3549 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1848 3550 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1850 3552 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1851 3553 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1852 3554 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
1853 3555 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
1854 3556 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
1855 3557 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
1856 3558 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
1857 3559 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
1858 3560 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
1859 3561 3.312697 GCATTCCTCCGACAAGTATTTCC 59.687 47.826 0.00 0.00 0.00 3.13
1860 3562 3.938963 TGCATTCCTCCGACAAGTATTTC 59.061 43.478 0.00 0.00 0.00 2.17
1861 3563 3.950397 TGCATTCCTCCGACAAGTATTT 58.050 40.909 0.00 0.00 0.00 1.40
1862 3564 3.627395 TGCATTCCTCCGACAAGTATT 57.373 42.857 0.00 0.00 0.00 1.89
1863 3565 3.845781 ATGCATTCCTCCGACAAGTAT 57.154 42.857 0.00 0.00 0.00 2.12
1864 3566 4.746535 TTATGCATTCCTCCGACAAGTA 57.253 40.909 3.54 0.00 0.00 2.24
1865 3567 3.627395 TTATGCATTCCTCCGACAAGT 57.373 42.857 3.54 0.00 0.00 3.16
1866 3568 4.963276 TTTTATGCATTCCTCCGACAAG 57.037 40.909 3.54 0.00 0.00 3.16
1867 3569 5.417266 TCATTTTTATGCATTCCTCCGACAA 59.583 36.000 3.54 0.00 0.00 3.18
1868 3570 4.946772 TCATTTTTATGCATTCCTCCGACA 59.053 37.500 3.54 0.00 0.00 4.35
1869 3571 5.499139 TCATTTTTATGCATTCCTCCGAC 57.501 39.130 3.54 0.00 0.00 4.79
1870 3572 6.096705 ACATTCATTTTTATGCATTCCTCCGA 59.903 34.615 3.54 0.00 0.00 4.55
1871 3573 6.275335 ACATTCATTTTTATGCATTCCTCCG 58.725 36.000 3.54 0.00 0.00 4.63
1872 3574 9.415544 GATACATTCATTTTTATGCATTCCTCC 57.584 33.333 3.54 0.00 0.00 4.30
1906 3608 9.781425 AGGAATGGATGTATCTAGATGTATCTT 57.219 33.333 15.79 9.47 38.32 2.40
1907 3609 9.420118 GAGGAATGGATGTATCTAGATGTATCT 57.580 37.037 15.79 3.84 40.86 1.98
1908 3610 8.637986 GGAGGAATGGATGTATCTAGATGTATC 58.362 40.741 15.79 16.36 0.00 2.24
1909 3611 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
1910 3612 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
1911 3613 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
1912 3614 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
1913 3615 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
1914 3616 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
1915 3617 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
1916 3618 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
1917 3619 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
1918 3620 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
1919 3621 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
1920 3622 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
1921 3623 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
1922 3624 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
1923 3625 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
1924 3626 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
1925 3627 3.381949 GAAATACTCGTCGGAGGAATGG 58.618 50.000 1.73 0.00 44.93 3.16
1926 3628 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
1927 3629 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
1928 3630 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
1929 3631 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
1930 3632 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
1931 3633 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
1932 3634 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
1933 3635 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
1934 3636 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
1935 3637 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
1936 3638 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
1937 3639 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
1938 3640 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
1939 3641 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1940 3642 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1941 3643 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1942 3644 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1943 3645 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1944 3646 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1945 3647 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
1946 3648 1.679977 TTGTACTCCCTCCGTCCGG 60.680 63.158 0.00 0.00 0.00 5.14
1947 3649 0.964358 AGTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
1948 3650 1.264295 AAGTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
1949 3651 2.298163 TCAAAGTTGTACTCCCTCCGTC 59.702 50.000 0.00 0.00 0.00 4.79
1950 3652 2.322658 TCAAAGTTGTACTCCCTCCGT 58.677 47.619 0.00 0.00 0.00 4.69
1951 3653 3.611766 ATCAAAGTTGTACTCCCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
1952 3654 5.167303 AGAATCAAAGTTGTACTCCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
1953 3655 6.468543 AGAAGAATCAAAGTTGTACTCCCTC 58.531 40.000 0.00 0.00 0.00 4.30
1954 3656 6.271159 AGAGAAGAATCAAAGTTGTACTCCCT 59.729 38.462 0.00 0.00 0.00 4.20
1955 3657 6.370166 CAGAGAAGAATCAAAGTTGTACTCCC 59.630 42.308 0.00 0.00 0.00 4.30
1956 3658 7.155328 TCAGAGAAGAATCAAAGTTGTACTCC 58.845 38.462 0.00 0.00 0.00 3.85
1957 3659 8.491950 GTTCAGAGAAGAATCAAAGTTGTACTC 58.508 37.037 0.00 0.00 0.00 2.59
2001 3703 7.572523 TGCTGACATTAATAGCAAATTAGCT 57.427 32.000 8.61 0.00 43.77 3.32
2060 3800 3.297134 ACAACCCTTCACAATGACACT 57.703 42.857 0.00 0.00 0.00 3.55
2170 3910 3.305403 GCTACTATGCTTGCTCATCCGTA 60.305 47.826 0.00 0.00 0.00 4.02
2218 3959 5.584913 TGAATAAGGGCCATTTTTCTACCA 58.415 37.500 26.28 10.44 0.00 3.25
2259 4000 6.156429 AGACTTATATTTGGAACGGAGGAAGT 59.844 38.462 0.00 0.00 0.00 3.01
2261 4002 6.555463 AGACTTATATTTGGAACGGAGGAA 57.445 37.500 0.00 0.00 0.00 3.36
2263 4004 7.625828 AAAAGACTTATATTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2265 4006 9.947433 TCTAAAAAGACTTATATTTGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
2289 4030 9.006839 TCGTATGTAGTCCGTATTGAAATATCT 57.993 33.333 0.00 0.00 0.00 1.98
2290 4031 9.616634 TTCGTATGTAGTCCGTATTGAAATATC 57.383 33.333 0.00 0.00 0.00 1.63
2292 4033 9.401873 CATTCGTATGTAGTCCGTATTGAAATA 57.598 33.333 0.00 0.00 0.00 1.40
2293 4034 7.924412 ACATTCGTATGTAGTCCGTATTGAAAT 59.076 33.333 5.81 0.00 43.12 2.17
2294 4035 7.259882 ACATTCGTATGTAGTCCGTATTGAAA 58.740 34.615 5.81 0.00 43.12 2.69
2295 4036 6.798482 ACATTCGTATGTAGTCCGTATTGAA 58.202 36.000 5.81 0.00 43.12 2.69
2296 4037 6.381481 ACATTCGTATGTAGTCCGTATTGA 57.619 37.500 5.81 0.00 43.12 2.57
2335 4076 9.717942 GGAGCAAAATGAGTGAATATATACTCT 57.282 33.333 14.09 1.56 42.86 3.24
2336 4077 8.651588 CGGAGCAAAATGAGTGAATATATACTC 58.348 37.037 8.23 8.23 42.77 2.59
2337 4078 8.150945 ACGGAGCAAAATGAGTGAATATATACT 58.849 33.333 0.00 0.00 0.00 2.12
2338 4079 8.311650 ACGGAGCAAAATGAGTGAATATATAC 57.688 34.615 0.00 0.00 0.00 1.47
2340 4081 8.939929 CATACGGAGCAAAATGAGTGAATATAT 58.060 33.333 0.00 0.00 0.00 0.86
2341 4082 7.931407 ACATACGGAGCAAAATGAGTGAATATA 59.069 33.333 0.00 0.00 0.00 0.86
2342 4083 6.767902 ACATACGGAGCAAAATGAGTGAATAT 59.232 34.615 0.00 0.00 0.00 1.28
2343 4084 6.112734 ACATACGGAGCAAAATGAGTGAATA 58.887 36.000 0.00 0.00 0.00 1.75
2344 4085 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2345 4086 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2346 4087 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2347 4088 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2348 4089 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2349 4090 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
2350 4091 5.127194 AGAGACTACATACGGAGCAAAATGA 59.873 40.000 0.00 0.00 0.00 2.57
2351 4092 5.352284 AGAGACTACATACGGAGCAAAATG 58.648 41.667 0.00 0.00 0.00 2.32
2352 4093 5.599999 AGAGACTACATACGGAGCAAAAT 57.400 39.130 0.00 0.00 0.00 1.82
2353 4094 6.710597 ATAGAGACTACATACGGAGCAAAA 57.289 37.500 0.00 0.00 0.00 2.44
2354 4095 6.320418 TCAATAGAGACTACATACGGAGCAAA 59.680 38.462 0.00 0.00 0.00 3.68
2355 4096 5.826208 TCAATAGAGACTACATACGGAGCAA 59.174 40.000 0.00 0.00 0.00 3.91
2356 4097 5.374071 TCAATAGAGACTACATACGGAGCA 58.626 41.667 0.00 0.00 0.00 4.26
2357 4098 5.943706 TCAATAGAGACTACATACGGAGC 57.056 43.478 0.00 0.00 0.00 4.70
2358 4099 8.788806 AGATTTCAATAGAGACTACATACGGAG 58.211 37.037 0.00 0.00 0.00 4.63
2359 4100 8.693120 AGATTTCAATAGAGACTACATACGGA 57.307 34.615 0.00 0.00 0.00 4.69
2360 4101 8.788806 AGAGATTTCAATAGAGACTACATACGG 58.211 37.037 0.00 0.00 0.00 4.02
2390 4131 9.335211 ACTCCCTCCGTTCCTAATATAATTATT 57.665 33.333 2.68 0.00 32.75 1.40
2391 4132 8.912614 ACTCCCTCCGTTCCTAATATAATTAT 57.087 34.615 2.97 2.97 0.00 1.28
2392 4133 9.471702 CTACTCCCTCCGTTCCTAATATAATTA 57.528 37.037 0.00 0.00 0.00 1.40
2393 4134 7.954620 ACTACTCCCTCCGTTCCTAATATAATT 59.045 37.037 0.00 0.00 0.00 1.40
2394 4135 7.477008 ACTACTCCCTCCGTTCCTAATATAAT 58.523 38.462 0.00 0.00 0.00 1.28
2395 4136 6.856757 ACTACTCCCTCCGTTCCTAATATAA 58.143 40.000 0.00 0.00 0.00 0.98
2396 4137 6.460103 ACTACTCCCTCCGTTCCTAATATA 57.540 41.667 0.00 0.00 0.00 0.86
2397 4138 5.336491 ACTACTCCCTCCGTTCCTAATAT 57.664 43.478 0.00 0.00 0.00 1.28
2398 4139 4.803329 ACTACTCCCTCCGTTCCTAATA 57.197 45.455 0.00 0.00 0.00 0.98
2399 4140 3.684408 ACTACTCCCTCCGTTCCTAAT 57.316 47.619 0.00 0.00 0.00 1.73
2400 4141 3.359950 GAACTACTCCCTCCGTTCCTAA 58.640 50.000 0.00 0.00 31.89 2.69
2401 4142 2.681976 CGAACTACTCCCTCCGTTCCTA 60.682 54.545 0.00 0.00 33.92 2.94
2402 4143 1.849977 GAACTACTCCCTCCGTTCCT 58.150 55.000 0.00 0.00 31.89 3.36
2403 4144 0.455005 CGAACTACTCCCTCCGTTCC 59.545 60.000 0.00 0.00 33.92 3.62
2404 4145 1.172175 ACGAACTACTCCCTCCGTTC 58.828 55.000 0.00 0.00 34.07 3.95
2405 4146 2.496899 TACGAACTACTCCCTCCGTT 57.503 50.000 0.00 0.00 0.00 4.44
2406 4147 2.363683 CTTACGAACTACTCCCTCCGT 58.636 52.381 0.00 0.00 0.00 4.69
2407 4148 1.674962 CCTTACGAACTACTCCCTCCG 59.325 57.143 0.00 0.00 0.00 4.63
2408 4149 2.687425 GACCTTACGAACTACTCCCTCC 59.313 54.545 0.00 0.00 0.00 4.30
2409 4150 2.687425 GGACCTTACGAACTACTCCCTC 59.313 54.545 0.00 0.00 0.00 4.30
2410 4151 2.042162 TGGACCTTACGAACTACTCCCT 59.958 50.000 0.00 0.00 0.00 4.20
2411 4152 2.165234 GTGGACCTTACGAACTACTCCC 59.835 54.545 0.00 0.00 0.00 4.30
2412 4153 3.087781 AGTGGACCTTACGAACTACTCC 58.912 50.000 0.00 0.00 0.00 3.85
2455 4209 2.098934 TGACCTGCAACATGACAACAAC 59.901 45.455 0.00 0.00 0.00 3.32
2466 4220 3.786635 AGAGTATCGAATGACCTGCAAC 58.213 45.455 0.00 0.00 42.67 4.17
2467 4221 3.447229 TGAGAGTATCGAATGACCTGCAA 59.553 43.478 0.00 0.00 42.67 4.08
2549 4303 2.675348 GTGAGGATTGACACTGCTAAGC 59.325 50.000 0.00 0.00 34.65 3.09
2587 4342 9.399797 TCATAAGATAGGGCAGCATTTATAATG 57.600 33.333 0.00 0.00 0.00 1.90
2626 4381 7.360522 CCGTGAGTATACTTTAACATGTTTGCA 60.361 37.037 17.78 0.00 0.00 4.08
2629 4384 6.183360 CGCCGTGAGTATACTTTAACATGTTT 60.183 38.462 17.78 0.51 0.00 2.83
2651 4407 5.867716 TCTTCTAATCAGTTGAGTTTACGCC 59.132 40.000 0.00 0.00 0.00 5.68
2654 4410 8.927721 GGTCTTCTTCTAATCAGTTGAGTTTAC 58.072 37.037 0.00 0.00 0.00 2.01
2672 4428 9.799106 TCTTTCAAGAAATAATGAGGTCTTCTT 57.201 29.630 0.00 0.00 36.92 2.52
2674 4430 9.833182 GTTCTTTCAAGAAATAATGAGGTCTTC 57.167 33.333 3.51 0.00 45.77 2.87
2742 4507 8.492415 AGGATATGACTATTTTACAGTAGGCA 57.508 34.615 0.00 0.00 40.06 4.75
2820 4586 0.185901 AACTGAGGTGCAATGGTGGT 59.814 50.000 0.00 0.00 0.00 4.16
2821 4587 0.883833 GAACTGAGGTGCAATGGTGG 59.116 55.000 0.00 0.00 0.00 4.61
2822 4588 1.808945 GAGAACTGAGGTGCAATGGTG 59.191 52.381 0.00 0.00 0.00 4.17
2898 4695 5.680104 GGTCCTACCCCAATTGGATACAGT 61.680 50.000 26.60 15.69 39.58 3.55
3006 4803 5.945784 AGATATAGCAAGGAGAGTAGAGCAG 59.054 44.000 0.00 0.00 0.00 4.24
3007 4804 5.709631 CAGATATAGCAAGGAGAGTAGAGCA 59.290 44.000 0.00 0.00 0.00 4.26
3008 4805 5.393027 GCAGATATAGCAAGGAGAGTAGAGC 60.393 48.000 0.00 0.00 0.00 4.09
3103 4900 5.425217 TGAATGGTAGCTCATGGAGAACTTA 59.575 40.000 0.00 0.00 0.00 2.24
3156 4961 1.134670 GCAGGGTGTATCCAGTCTCAC 60.135 57.143 0.00 0.00 38.11 3.51
3157 4962 1.195115 GCAGGGTGTATCCAGTCTCA 58.805 55.000 0.00 0.00 38.11 3.27
3178 4983 1.909700 TAAAACAGAAGCAGCAGGGG 58.090 50.000 0.00 0.00 0.00 4.79
3216 5023 0.671163 CCGCAGTTTGCCGGTAAGTA 60.671 55.000 4.79 0.00 41.12 2.24
3322 5130 2.040544 CCGTTTCTTCATGCCCGCT 61.041 57.895 0.00 0.00 0.00 5.52
3324 5132 3.051392 GCCCGTTTCTTCATGCCCG 62.051 63.158 0.00 0.00 0.00 6.13
3330 5138 0.941542 CTTTCACGCCCGTTTCTTCA 59.058 50.000 0.00 0.00 0.00 3.02
3361 5169 0.877071 CGAAACAATGGCAGCTGAGT 59.123 50.000 20.43 4.09 0.00 3.41
3375 5183 1.414378 CCCACCGAATTTTGCGAAAC 58.586 50.000 0.00 0.00 0.00 2.78
3382 5190 0.318120 CTGCTTGCCCACCGAATTTT 59.682 50.000 0.00 0.00 0.00 1.82
3408 5217 2.044650 GCAGCTGCAAGATCCCCA 60.045 61.111 33.36 0.00 41.59 4.96
3425 5234 1.233019 CCAAGTCTCCACAACTGCAG 58.767 55.000 13.48 13.48 0.00 4.41
3481 5290 1.645919 AGGCAATCAACCCCCAGTAAT 59.354 47.619 0.00 0.00 0.00 1.89
3498 5307 4.996758 ACAATAAATTGCTGTTCCAAAGGC 59.003 37.500 2.60 0.00 41.38 4.35
3520 5329 5.127491 AGATCACCAGTCTGCTAGTAGTAC 58.873 45.833 7.77 5.24 0.00 2.73
3550 6005 8.786826 ACGTCTTCATTCCAATTCAGTAAATA 57.213 30.769 0.00 0.00 0.00 1.40
3563 6018 0.237235 TTGCGCAACGTCTTCATTCC 59.763 50.000 21.02 0.00 0.00 3.01
3566 6021 0.512952 GAGTTGCGCAACGTCTTCAT 59.487 50.000 38.96 24.80 45.50 2.57
3573 6028 0.515127 TAACCATGAGTTGCGCAACG 59.485 50.000 38.96 28.88 45.50 4.10
3703 6158 4.822896 TGCACAAATAGTCCCGTACTTTTT 59.177 37.500 0.00 0.00 39.17 1.94
3704 6159 4.391155 TGCACAAATAGTCCCGTACTTTT 58.609 39.130 0.00 0.00 39.80 2.27
3705 6160 4.000988 CTGCACAAATAGTCCCGTACTTT 58.999 43.478 0.00 0.00 39.80 2.66
3706 6161 3.596214 CTGCACAAATAGTCCCGTACTT 58.404 45.455 0.00 0.00 39.80 2.24
3707 6162 2.677037 GCTGCACAAATAGTCCCGTACT 60.677 50.000 0.00 0.00 42.62 2.73
3708 6163 1.664151 GCTGCACAAATAGTCCCGTAC 59.336 52.381 0.00 0.00 0.00 3.67
3709 6164 1.553248 AGCTGCACAAATAGTCCCGTA 59.447 47.619 1.02 0.00 0.00 4.02
3710 6165 0.324943 AGCTGCACAAATAGTCCCGT 59.675 50.000 1.02 0.00 0.00 5.28
3711 6166 2.309528 TAGCTGCACAAATAGTCCCG 57.690 50.000 1.02 0.00 0.00 5.14
3712 6167 5.385509 TTTTTAGCTGCACAAATAGTCCC 57.614 39.130 1.02 0.00 0.00 4.46
3754 6209 2.036346 GCAACCAAAGTGGAAGAGCAAT 59.964 45.455 0.18 0.00 40.96 3.56
3815 6277 4.318332 TGATTTGCAACTCTGTACTCTGG 58.682 43.478 16.65 0.00 0.00 3.86
3816 6278 4.993584 ACTGATTTGCAACTCTGTACTCTG 59.006 41.667 22.20 2.30 0.00 3.35
3817 6279 4.993584 CACTGATTTGCAACTCTGTACTCT 59.006 41.667 22.77 4.15 0.00 3.24
3818 6280 4.752101 ACACTGATTTGCAACTCTGTACTC 59.248 41.667 22.77 0.00 0.00 2.59
3819 6281 4.512944 CACACTGATTTGCAACTCTGTACT 59.487 41.667 22.77 12.22 0.00 2.73
3820 6282 4.511454 TCACACTGATTTGCAACTCTGTAC 59.489 41.667 22.77 0.00 0.00 2.90
3821 6283 4.702831 TCACACTGATTTGCAACTCTGTA 58.297 39.130 22.77 10.12 0.00 2.74
3822 6284 3.544684 TCACACTGATTTGCAACTCTGT 58.455 40.909 19.26 19.26 0.00 3.41
4013 6477 4.301072 TTTCTAACAAGGCCTGTGCTAT 57.699 40.909 5.69 0.29 38.67 2.97
4070 6534 1.340017 TGTGCTTCAGTTATGGGCCTC 60.340 52.381 4.53 0.00 0.00 4.70
4103 6567 2.281484 TGCCAGGCTCCGTTTGTC 60.281 61.111 14.15 0.00 0.00 3.18
4270 6740 5.066634 TGAAACGTAAACAAAAGGCAGATGA 59.933 36.000 0.00 0.00 0.00 2.92
4276 6746 4.916870 AGAGTGAAACGTAAACAAAAGGC 58.083 39.130 0.00 0.00 45.86 4.35
4287 6757 1.198178 GAGAGAGCGAGAGTGAAACGT 59.802 52.381 0.00 0.00 45.86 3.99
4296 6766 1.077357 GGTCAGGGAGAGAGCGAGA 60.077 63.158 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.