Multiple sequence alignment - TraesCS1B01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G294600 chr1B 100.000 4732 0 0 1 4732 512635061 512630330 0.000000e+00 8739
1 TraesCS1B01G294600 chr1B 87.083 480 42 13 3943 4407 641523134 641523608 4.190000e-145 525
2 TraesCS1B01G294600 chr1B 93.966 116 5 1 4608 4723 150373047 150372934 1.750000e-39 174
3 TraesCS1B01G294600 chr1B 93.043 115 5 2 4609 4723 150370343 150370454 1.050000e-36 165
4 TraesCS1B01G294600 chr1A 92.709 4622 242 61 43 4613 482772363 482767786 0.000000e+00 6580
5 TraesCS1B01G294600 chr1D 92.687 4075 216 42 574 4611 382723625 382719596 0.000000e+00 5799
6 TraesCS1B01G294600 chr1D 93.056 288 19 1 1 287 382723925 382723638 2.040000e-113 420
7 TraesCS1B01G294600 chr3D 89.827 462 33 7 3959 4407 45064155 45064615 8.830000e-162 580
8 TraesCS1B01G294600 chr3D 90.585 393 23 6 3963 4354 36822835 36822456 4.220000e-140 508
9 TraesCS1B01G294600 chr3D 89.059 393 29 8 3963 4354 50658038 50658417 4.280000e-130 475
10 TraesCS1B01G294600 chr4D 90.000 450 34 8 3951 4396 30195495 30195053 5.310000e-159 571
11 TraesCS1B01G294600 chrUn 90.842 404 20 5 3952 4354 69362767 69362380 4.190000e-145 525
12 TraesCS1B01G294600 chr3A 91.444 374 21 9 3961 4333 605179770 605180133 1.970000e-138 503
13 TraesCS1B01G294600 chr7A 95.868 121 3 1 4612 4732 94534127 94534009 1.340000e-45 195
14 TraesCS1B01G294600 chr7A 93.750 112 5 1 4612 4723 31811124 31811015 2.930000e-37 167
15 TraesCS1B01G294600 chr6D 95.833 120 3 1 4613 4732 105578761 105578644 4.830000e-45 193
16 TraesCS1B01G294600 chr5A 95.041 121 4 1 4612 4732 522699310 522699192 6.250000e-44 189
17 TraesCS1B01G294600 chr5A 93.043 115 6 1 4609 4723 22977109 22977221 2.930000e-37 167
18 TraesCS1B01G294600 chr6B 93.750 112 5 1 4612 4723 532354336 532354227 2.930000e-37 167
19 TraesCS1B01G294600 chr2A 93.750 112 5 1 4612 4723 180211797 180211906 2.930000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G294600 chr1B 512630330 512635061 4731 True 8739.0 8739 100.0000 1 4732 1 chr1B.!!$R2 4731
1 TraesCS1B01G294600 chr1A 482767786 482772363 4577 True 6580.0 6580 92.7090 43 4613 1 chr1A.!!$R1 4570
2 TraesCS1B01G294600 chr1D 382719596 382723925 4329 True 3109.5 5799 92.8715 1 4611 2 chr1D.!!$R1 4610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 424 0.328258 AGGCAGCCTACCAAATCGTT 59.672 50.000 14.18 0.0 28.47 3.85 F
490 492 1.002868 GCTGTGAGCCTGTGACCAT 60.003 57.895 0.00 0.0 34.48 3.55 F
2408 2434 0.321122 CTGACTCCAAGCCCAGTGAC 60.321 60.000 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2360 0.036010 GCAGCTGATACACCAGTGGT 60.036 55.000 20.43 9.70 36.57 4.16 R
2462 2488 2.626780 GGTGTGGCCGGCTCTTTTC 61.627 63.158 28.56 9.02 0.00 2.29 R
3741 3801 0.811616 GATCTGTGGATCGTGTGGCC 60.812 60.000 0.00 0.00 38.91 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 4.726021 GCTGATGTGTTAAGAGTTCATGCG 60.726 45.833 0.00 0.00 0.00 4.73
129 130 1.656652 CGATCATTGACAGGGTGGAC 58.343 55.000 0.00 0.00 0.00 4.02
141 142 2.554032 CAGGGTGGACTTTGTCATGTTC 59.446 50.000 0.00 0.00 33.68 3.18
186 187 2.746277 GGCAATGCCCGACGAAGT 60.746 61.111 14.47 0.00 44.98 3.01
228 230 5.732331 ATCCTGAAACTTCCATAATCCCA 57.268 39.130 0.00 0.00 0.00 4.37
247 249 4.461431 TCCCATGATATGAAGATGCAATGC 59.539 41.667 0.00 0.00 0.00 3.56
273 275 1.824230 TGTTGGCACTTTGCTCTGTTT 59.176 42.857 0.00 0.00 44.28 2.83
292 294 6.428465 TCTGTTTTGCTGAATTCGTATGGTTA 59.572 34.615 0.04 0.00 0.00 2.85
316 318 4.116238 GACTCGGAACTGATCCTGAATTC 58.884 47.826 0.00 0.00 46.98 2.17
331 333 5.710099 TCCTGAATTCCAAATGGTGTCTTAC 59.290 40.000 2.27 0.00 36.34 2.34
357 359 1.391729 AGGAAGCTGAGCTCCCTCT 59.608 57.895 6.35 0.00 39.99 3.69
358 360 0.687427 AGGAAGCTGAGCTCCCTCTC 60.687 60.000 6.35 0.00 39.99 3.20
359 361 0.687427 GGAAGCTGAGCTCCCTCTCT 60.687 60.000 7.72 0.00 38.25 3.10
374 376 4.158025 TCCCTCTCTGATCAGTTTACGTTC 59.842 45.833 21.92 0.00 0.00 3.95
422 424 0.328258 AGGCAGCCTACCAAATCGTT 59.672 50.000 14.18 0.00 28.47 3.85
433 435 3.589988 ACCAAATCGTTGAGCTCAGTAG 58.410 45.455 17.43 12.13 36.83 2.57
465 467 9.643693 TTTACCTTCTTATTCAGTAAACCGTAG 57.356 33.333 0.00 0.00 30.22 3.51
490 492 1.002868 GCTGTGAGCCTGTGACCAT 60.003 57.895 0.00 0.00 34.48 3.55
519 523 2.269241 GAAAGGGGAGGCGGTCAG 59.731 66.667 0.00 0.00 0.00 3.51
560 564 8.584063 AGTTTTAACCTGAGTCCTTTTGTTTA 57.416 30.769 0.00 0.00 0.00 2.01
679 692 5.988561 CGGGAGAAAACATCCAAAATTTCAA 59.011 36.000 0.00 0.00 38.70 2.69
751 767 5.566469 CATTTGACCCTTAACTAGACCCAA 58.434 41.667 0.00 0.00 0.00 4.12
753 769 4.628963 TGACCCTTAACTAGACCCAAAC 57.371 45.455 0.00 0.00 0.00 2.93
754 770 3.328637 TGACCCTTAACTAGACCCAAACC 59.671 47.826 0.00 0.00 0.00 3.27
768 784 3.153919 CCCAAACCGAAAGAATGAAGGA 58.846 45.455 0.00 0.00 0.00 3.36
974 990 6.855763 AACATATTTTGGAGCTGATTTCCA 57.144 33.333 0.00 0.00 42.81 3.53
975 991 6.461110 ACATATTTTGGAGCTGATTTCCAG 57.539 37.500 0.00 0.00 45.00 3.86
1073 1089 7.506328 ACGCAAGGTAAAATTCTTACTTTCT 57.494 32.000 9.10 0.00 46.39 2.52
1394 1410 7.093112 ACAGGAGATTTCTTTAGTAGTGATGCT 60.093 37.037 0.00 0.00 0.00 3.79
1513 1529 8.971321 CCTGATTTTCTGAACACAAATAGTTTG 58.029 33.333 1.15 1.15 45.95 2.93
1521 1537 7.809331 TCTGAACACAAATAGTTTGATTCATGC 59.191 33.333 18.06 0.00 42.47 4.06
1537 1553 7.330262 TGATTCATGCAACTCTTGTACATAGA 58.670 34.615 11.58 9.31 0.00 1.98
1616 1633 4.478686 ACTACCTTCCAGCCTCCATTATTT 59.521 41.667 0.00 0.00 0.00 1.40
1673 1690 3.525199 ACACTTGCCTATTCTCCCAAGAT 59.475 43.478 6.27 0.00 38.37 2.40
1681 1698 4.082136 CCTATTCTCCCAAGATACCGTAGC 60.082 50.000 0.00 0.00 0.00 3.58
1709 1726 7.578169 AAACTTGTACTACGAGTAATTGAGC 57.422 36.000 9.21 0.00 41.82 4.26
1727 1744 2.421424 GAGCACCTTCATGTAAAGCAGG 59.579 50.000 0.00 0.00 0.00 4.85
1851 1874 6.451064 ACAGTGTCAGTATCGTGATATTCA 57.549 37.500 0.00 0.00 0.00 2.57
1852 1875 7.043961 ACAGTGTCAGTATCGTGATATTCAT 57.956 36.000 0.00 0.00 0.00 2.57
2318 2344 8.560374 GCATTGTTTTTCCTATCTATACAGGAC 58.440 37.037 0.00 0.00 40.70 3.85
2321 2347 5.464030 TTTTCCTATCTATACAGGACGCC 57.536 43.478 0.00 0.00 40.70 5.68
2408 2434 0.321122 CTGACTCCAAGCCCAGTGAC 60.321 60.000 0.00 0.00 0.00 3.67
2474 2500 2.563427 GTGCTGAAAAGAGCCGGC 59.437 61.111 21.89 21.89 38.28 6.13
2506 2532 0.179111 TCGGTGGATCTTGTCGCATC 60.179 55.000 0.00 0.00 0.00 3.91
2528 2554 2.437002 GGTTTGCGCCCGGTATCA 60.437 61.111 4.18 0.00 0.00 2.15
2531 2557 1.003112 TTTGCGCCCGGTATCAGTT 60.003 52.632 4.18 0.00 0.00 3.16
2534 2560 1.038681 TGCGCCCGGTATCAGTTCTA 61.039 55.000 4.18 0.00 0.00 2.10
2537 2563 1.401148 CGCCCGGTATCAGTTCTATCG 60.401 57.143 0.00 0.00 0.00 2.92
2579 2605 0.096976 GTTCGATGGCATCAACACCG 59.903 55.000 25.88 12.43 0.00 4.94
2621 2647 3.265791 GGAGCATGATATCCCGATTGTC 58.734 50.000 0.00 0.00 0.00 3.18
2650 2676 6.540083 TCACTGATCTCATCCGGTTAGTATA 58.460 40.000 0.00 0.00 0.00 1.47
2678 2704 4.224715 GGTGAAGCCTTTGTGAACTTAC 57.775 45.455 0.00 0.00 0.00 2.34
2679 2705 3.630312 GGTGAAGCCTTTGTGAACTTACA 59.370 43.478 0.00 0.00 0.00 2.41
2689 2715 4.630894 TGTGAACTTACAGCCTGTTTTG 57.369 40.909 1.02 0.00 0.00 2.44
2695 2721 4.270008 ACTTACAGCCTGTTTTGTTCTGT 58.730 39.130 1.02 0.00 40.60 3.41
2699 2725 5.652994 ACAGCCTGTTTTGTTCTGTTTTA 57.347 34.783 0.00 0.00 34.69 1.52
2700 2726 5.407502 ACAGCCTGTTTTGTTCTGTTTTAC 58.592 37.500 0.00 0.00 34.69 2.01
2703 2729 5.185056 AGCCTGTTTTGTTCTGTTTTACAGT 59.815 36.000 6.71 0.00 46.03 3.55
2704 2730 5.867174 GCCTGTTTTGTTCTGTTTTACAGTT 59.133 36.000 6.71 0.00 46.03 3.16
2705 2731 6.367695 GCCTGTTTTGTTCTGTTTTACAGTTT 59.632 34.615 6.71 0.00 46.03 2.66
2706 2732 7.542824 GCCTGTTTTGTTCTGTTTTACAGTTTA 59.457 33.333 6.71 0.00 46.03 2.01
2707 2733 9.072294 CCTGTTTTGTTCTGTTTTACAGTTTAG 57.928 33.333 6.71 0.00 46.03 1.85
2708 2734 9.834628 CTGTTTTGTTCTGTTTTACAGTTTAGA 57.165 29.630 6.71 0.00 46.03 2.10
2709 2735 9.615295 TGTTTTGTTCTGTTTTACAGTTTAGAC 57.385 29.630 6.71 2.39 46.03 2.59
2710 2736 9.615295 GTTTTGTTCTGTTTTACAGTTTAGACA 57.385 29.630 6.71 3.75 46.03 3.41
2715 2741 9.595357 GTTCTGTTTTACAGTTTAGACATTAGC 57.405 33.333 6.71 0.00 46.03 3.09
2744 2770 3.846588 AGCCTGTTTTCCTCTCCAAGATA 59.153 43.478 0.00 0.00 0.00 1.98
2746 2772 5.044550 AGCCTGTTTTCCTCTCCAAGATAAT 60.045 40.000 0.00 0.00 0.00 1.28
2748 2774 7.001073 GCCTGTTTTCCTCTCCAAGATAATAT 58.999 38.462 0.00 0.00 0.00 1.28
2790 2816 9.155975 GATGTGGCTATGTTAGGATAATTACAG 57.844 37.037 0.00 0.00 0.00 2.74
2794 2820 8.148351 TGGCTATGTTAGGATAATTACAGTGTC 58.852 37.037 0.00 0.00 0.00 3.67
2802 2828 7.233389 AGGATAATTACAGTGTCGCAGATAT 57.767 36.000 0.00 0.00 40.67 1.63
2805 2832 3.728076 TTACAGTGTCGCAGATATCCC 57.272 47.619 0.00 0.00 40.67 3.85
2810 2837 3.310774 CAGTGTCGCAGATATCCCTTTTG 59.689 47.826 0.00 0.00 40.67 2.44
2811 2838 3.197766 AGTGTCGCAGATATCCCTTTTGA 59.802 43.478 0.00 0.00 40.67 2.69
2812 2839 3.557595 GTGTCGCAGATATCCCTTTTGAG 59.442 47.826 0.00 0.00 40.67 3.02
2813 2840 3.450817 TGTCGCAGATATCCCTTTTGAGA 59.549 43.478 0.00 0.00 40.67 3.27
2814 2841 4.081142 TGTCGCAGATATCCCTTTTGAGAA 60.081 41.667 0.00 0.00 40.67 2.87
2815 2842 4.509600 GTCGCAGATATCCCTTTTGAGAAG 59.490 45.833 0.00 0.00 40.67 2.85
2816 2843 4.405680 TCGCAGATATCCCTTTTGAGAAGA 59.594 41.667 0.00 0.00 0.00 2.87
2993 3022 7.531857 TGTTGCAAAGGTAATGGAATTCTTA 57.468 32.000 0.00 0.00 37.87 2.10
2996 3025 9.087424 GTTGCAAAGGTAATGGAATTCTTATTC 57.913 33.333 0.00 0.00 37.87 1.75
3045 3088 2.159627 ACTCGTTTGATTGTGCGATTCC 59.840 45.455 0.00 0.00 32.79 3.01
3046 3089 2.147150 TCGTTTGATTGTGCGATTCCA 58.853 42.857 0.00 0.00 0.00 3.53
3047 3090 2.159430 TCGTTTGATTGTGCGATTCCAG 59.841 45.455 0.00 0.00 0.00 3.86
3048 3091 2.095768 CGTTTGATTGTGCGATTCCAGT 60.096 45.455 0.00 0.00 0.00 4.00
3049 3092 3.609175 CGTTTGATTGTGCGATTCCAGTT 60.609 43.478 0.00 0.00 0.00 3.16
3050 3093 3.557577 TTGATTGTGCGATTCCAGTTG 57.442 42.857 0.00 0.00 0.00 3.16
3051 3094 2.503331 TGATTGTGCGATTCCAGTTGT 58.497 42.857 0.00 0.00 0.00 3.32
3052 3095 2.884012 TGATTGTGCGATTCCAGTTGTT 59.116 40.909 0.00 0.00 0.00 2.83
3053 3096 3.317711 TGATTGTGCGATTCCAGTTGTTT 59.682 39.130 0.00 0.00 0.00 2.83
3054 3097 3.347958 TTGTGCGATTCCAGTTGTTTC 57.652 42.857 0.00 0.00 0.00 2.78
3055 3098 1.606668 TGTGCGATTCCAGTTGTTTCC 59.393 47.619 0.00 0.00 0.00 3.13
3056 3099 1.606668 GTGCGATTCCAGTTGTTTCCA 59.393 47.619 0.00 0.00 0.00 3.53
3057 3100 1.879380 TGCGATTCCAGTTGTTTCCAG 59.121 47.619 0.00 0.00 0.00 3.86
3058 3101 1.880027 GCGATTCCAGTTGTTTCCAGT 59.120 47.619 0.00 0.00 0.00 4.00
3059 3102 2.293399 GCGATTCCAGTTGTTTCCAGTT 59.707 45.455 0.00 0.00 0.00 3.16
3060 3103 3.243401 GCGATTCCAGTTGTTTCCAGTTT 60.243 43.478 0.00 0.00 0.00 2.66
3061 3104 4.023536 GCGATTCCAGTTGTTTCCAGTTTA 60.024 41.667 0.00 0.00 0.00 2.01
3062 3105 5.335661 GCGATTCCAGTTGTTTCCAGTTTAT 60.336 40.000 0.00 0.00 0.00 1.40
3063 3106 6.314784 CGATTCCAGTTGTTTCCAGTTTATC 58.685 40.000 0.00 0.00 0.00 1.75
3074 3117 2.771943 TCCAGTTTATCAATCTCCGGCT 59.228 45.455 0.00 0.00 0.00 5.52
3075 3118 2.874701 CCAGTTTATCAATCTCCGGCTG 59.125 50.000 0.00 0.00 0.00 4.85
3081 3132 0.322456 TCAATCTCCGGCTGGTTTGG 60.322 55.000 12.43 0.96 36.30 3.28
3082 3133 0.609131 CAATCTCCGGCTGGTTTGGT 60.609 55.000 12.43 0.00 36.30 3.67
3163 3214 2.202797 CTGACCGGCGACATCCTG 60.203 66.667 9.30 0.00 0.00 3.86
3294 3345 3.780173 GCTCGGCCAGAAGCTCCT 61.780 66.667 13.14 0.00 43.05 3.69
3295 3346 2.985456 CTCGGCCAGAAGCTCCTT 59.015 61.111 2.24 0.00 43.05 3.36
3319 3370 1.352622 ACAACCTGCAGGACCAAGGA 61.353 55.000 39.19 0.00 38.94 3.36
3355 3406 3.681835 AACGTCGAGCTCGGCCTT 61.682 61.111 32.97 24.94 41.58 4.35
3441 3496 6.603940 TTTAACATTCTTGGGAAGGATTGG 57.396 37.500 0.00 0.00 36.81 3.16
3444 3499 3.181418 ACATTCTTGGGAAGGATTGGTGT 60.181 43.478 0.00 0.00 36.81 4.16
3445 3500 2.584835 TCTTGGGAAGGATTGGTGTG 57.415 50.000 0.00 0.00 0.00 3.82
3446 3501 1.780309 TCTTGGGAAGGATTGGTGTGT 59.220 47.619 0.00 0.00 0.00 3.72
3491 3551 4.380531 TCTTGCTGTCGTTTCAGATTCTT 58.619 39.130 8.59 0.00 37.61 2.52
3720 3780 3.056107 CCTCAATCCTACGGAAGACAACA 60.056 47.826 0.00 0.00 34.34 3.33
3725 3785 1.343465 CCTACGGAAGACAACACCACT 59.657 52.381 0.00 0.00 0.00 4.00
3727 3787 2.814280 ACGGAAGACAACACCACTAG 57.186 50.000 0.00 0.00 0.00 2.57
3741 3801 5.839621 ACACCACTAGCTAATTATACACCG 58.160 41.667 0.00 0.00 0.00 4.94
3742 3802 5.221382 ACACCACTAGCTAATTATACACCGG 60.221 44.000 0.00 0.00 0.00 5.28
3901 3968 1.816835 ACAAACTACGAGCCTCGATCA 59.183 47.619 22.80 4.42 43.74 2.92
3907 3974 2.107953 GAGCCTCGATCACTGGGC 59.892 66.667 3.02 3.02 44.38 5.36
3926 3993 1.678728 GCCCAGGACGATCATCAAACA 60.679 52.381 0.00 0.00 0.00 2.83
3934 4001 1.007011 CGATCATCAAACACGACGAGC 60.007 52.381 0.00 0.00 0.00 5.03
3952 4021 3.839432 CGAGAGAAGGCGGGGGAC 61.839 72.222 0.00 0.00 0.00 4.46
4185 4254 1.006805 GGAGGAGATGCCGATGTCG 60.007 63.158 0.00 0.00 43.43 4.35
4200 4269 4.641645 TCGGGGTGCACCTGCTTG 62.642 66.667 33.91 18.94 45.92 4.01
4432 4513 2.060980 GGATCGAGAGGTGGCTGGT 61.061 63.158 0.00 0.00 0.00 4.00
4505 4589 2.175499 GGTGGGATGAGATGGGAATTGA 59.825 50.000 0.00 0.00 0.00 2.57
4519 4603 6.606241 TGGGAATTGAATTTATAGAGGGGT 57.394 37.500 0.00 0.00 0.00 4.95
4520 4604 6.992235 TGGGAATTGAATTTATAGAGGGGTT 58.008 36.000 0.00 0.00 0.00 4.11
4523 4607 7.210174 GGAATTGAATTTATAGAGGGGTTTGC 58.790 38.462 0.00 0.00 0.00 3.68
4544 4628 1.497309 GGGGTGTGATTGGTGGAGGA 61.497 60.000 0.00 0.00 0.00 3.71
4547 4631 0.678048 GTGTGATTGGTGGAGGAGGC 60.678 60.000 0.00 0.00 0.00 4.70
4578 4662 3.007542 GGTGGGGTGGAAGGATCC 58.992 66.667 2.48 2.48 46.76 3.36
4593 4677 2.311688 GATCCCAGGCGTCCGATGTT 62.312 60.000 0.00 0.00 0.00 2.71
4595 4679 3.499737 CCAGGCGTCCGATGTTGC 61.500 66.667 0.00 0.00 0.00 4.17
4597 4681 1.153647 CAGGCGTCCGATGTTGCTA 60.154 57.895 0.00 0.00 0.00 3.49
4613 4697 1.207089 TGCTAACGGTGAGGATTGAGG 59.793 52.381 0.00 0.00 0.00 3.86
4614 4698 1.473434 GCTAACGGTGAGGATTGAGGG 60.473 57.143 0.00 0.00 0.00 4.30
4615 4699 1.139058 CTAACGGTGAGGATTGAGGGG 59.861 57.143 0.00 0.00 0.00 4.79
4616 4700 2.190578 CGGTGAGGATTGAGGGGC 59.809 66.667 0.00 0.00 0.00 5.80
4617 4701 2.370445 CGGTGAGGATTGAGGGGCT 61.370 63.158 0.00 0.00 0.00 5.19
4618 4702 1.225704 GGTGAGGATTGAGGGGCTG 59.774 63.158 0.00 0.00 0.00 4.85
4619 4703 1.566298 GGTGAGGATTGAGGGGCTGT 61.566 60.000 0.00 0.00 0.00 4.40
4620 4704 0.329596 GTGAGGATTGAGGGGCTGTT 59.670 55.000 0.00 0.00 0.00 3.16
4621 4705 1.075601 TGAGGATTGAGGGGCTGTTT 58.924 50.000 0.00 0.00 0.00 2.83
4622 4706 1.272092 TGAGGATTGAGGGGCTGTTTG 60.272 52.381 0.00 0.00 0.00 2.93
4623 4707 0.040204 AGGATTGAGGGGCTGTTTGG 59.960 55.000 0.00 0.00 0.00 3.28
4624 4708 0.039618 GGATTGAGGGGCTGTTTGGA 59.960 55.000 0.00 0.00 0.00 3.53
4625 4709 1.342374 GGATTGAGGGGCTGTTTGGAT 60.342 52.381 0.00 0.00 0.00 3.41
4626 4710 2.460669 GATTGAGGGGCTGTTTGGATT 58.539 47.619 0.00 0.00 0.00 3.01
4627 4711 1.631405 TTGAGGGGCTGTTTGGATTG 58.369 50.000 0.00 0.00 0.00 2.67
4628 4712 0.776810 TGAGGGGCTGTTTGGATTGA 59.223 50.000 0.00 0.00 0.00 2.57
4629 4713 1.272092 TGAGGGGCTGTTTGGATTGAG 60.272 52.381 0.00 0.00 0.00 3.02
4630 4714 0.613012 AGGGGCTGTTTGGATTGAGC 60.613 55.000 0.00 0.00 0.00 4.26
4632 4716 1.893062 GGCTGTTTGGATTGAGCCC 59.107 57.895 0.00 0.00 44.54 5.19
4633 4717 0.899717 GGCTGTTTGGATTGAGCCCA 60.900 55.000 0.00 0.00 44.54 5.36
4634 4718 0.968405 GCTGTTTGGATTGAGCCCAA 59.032 50.000 0.00 0.00 41.53 4.12
4635 4719 1.551883 GCTGTTTGGATTGAGCCCAAT 59.448 47.619 0.00 0.00 45.10 3.16
4642 4726 2.906268 ATTGAGCCCAATCTTGCCC 58.094 52.632 0.00 0.00 38.57 5.36
4643 4727 0.337428 ATTGAGCCCAATCTTGCCCT 59.663 50.000 0.00 0.00 38.57 5.19
4644 4728 0.998928 TTGAGCCCAATCTTGCCCTA 59.001 50.000 0.00 0.00 0.00 3.53
4645 4729 0.255890 TGAGCCCAATCTTGCCCTAC 59.744 55.000 0.00 0.00 0.00 3.18
4646 4730 0.466372 GAGCCCAATCTTGCCCTACC 60.466 60.000 0.00 0.00 0.00 3.18
4647 4731 1.214305 AGCCCAATCTTGCCCTACCA 61.214 55.000 0.00 0.00 0.00 3.25
4648 4732 0.324275 GCCCAATCTTGCCCTACCAA 60.324 55.000 0.00 0.00 0.00 3.67
4649 4733 1.894978 GCCCAATCTTGCCCTACCAAA 60.895 52.381 0.00 0.00 0.00 3.28
4650 4734 2.534990 CCCAATCTTGCCCTACCAAAA 58.465 47.619 0.00 0.00 0.00 2.44
4651 4735 2.903135 CCCAATCTTGCCCTACCAAAAA 59.097 45.455 0.00 0.00 0.00 1.94
4673 4757 2.583472 GGCAAGACCAATTCCAGGG 58.417 57.895 0.00 0.00 38.86 4.45
4674 4758 1.607801 GGCAAGACCAATTCCAGGGC 61.608 60.000 0.00 0.00 38.86 5.19
4675 4759 0.899717 GCAAGACCAATTCCAGGGCA 60.900 55.000 0.00 0.00 36.27 5.36
4676 4760 1.856629 CAAGACCAATTCCAGGGCAT 58.143 50.000 0.00 0.00 36.27 4.40
4677 4761 2.949963 GCAAGACCAATTCCAGGGCATA 60.950 50.000 0.00 0.00 36.27 3.14
4678 4762 3.569491 CAAGACCAATTCCAGGGCATAT 58.431 45.455 0.00 0.00 36.27 1.78
4679 4763 3.234234 AGACCAATTCCAGGGCATATG 57.766 47.619 0.00 0.00 36.27 1.78
4680 4764 2.785269 AGACCAATTCCAGGGCATATGA 59.215 45.455 6.97 0.00 36.27 2.15
4681 4765 2.887152 GACCAATTCCAGGGCATATGAC 59.113 50.000 6.97 2.47 33.02 3.06
4682 4766 2.242043 CCAATTCCAGGGCATATGACC 58.758 52.381 21.03 21.03 46.16 4.02
4709 4793 4.272100 GCAAGGCATGGCTGTTTG 57.728 55.556 24.08 18.10 0.00 2.93
4710 4794 1.375013 GCAAGGCATGGCTGTTTGG 60.375 57.895 24.08 11.12 0.00 3.28
4711 4795 1.818959 GCAAGGCATGGCTGTTTGGA 61.819 55.000 24.08 0.00 0.00 3.53
4712 4796 0.899720 CAAGGCATGGCTGTTTGGAT 59.100 50.000 24.08 1.44 0.00 3.41
4713 4797 1.276989 CAAGGCATGGCTGTTTGGATT 59.723 47.619 24.08 0.59 0.00 3.01
4714 4798 0.899720 AGGCATGGCTGTTTGGATTG 59.100 50.000 22.69 0.00 0.00 2.67
4715 4799 0.609662 GGCATGGCTGTTTGGATTGT 59.390 50.000 12.86 0.00 0.00 2.71
4716 4800 1.824230 GGCATGGCTGTTTGGATTGTA 59.176 47.619 12.86 0.00 0.00 2.41
4717 4801 2.159198 GGCATGGCTGTTTGGATTGTAG 60.159 50.000 12.86 0.00 0.00 2.74
4718 4802 2.736400 GCATGGCTGTTTGGATTGTAGC 60.736 50.000 0.00 0.00 0.00 3.58
4722 4806 3.874392 GCTGTTTGGATTGTAGCCATT 57.126 42.857 0.00 0.00 34.90 3.16
4723 4807 3.514645 GCTGTTTGGATTGTAGCCATTG 58.485 45.455 0.00 0.00 34.90 2.82
4724 4808 3.514645 CTGTTTGGATTGTAGCCATTGC 58.485 45.455 0.00 0.00 34.90 3.56
4725 4809 2.896044 TGTTTGGATTGTAGCCATTGCA 59.104 40.909 0.00 0.00 41.13 4.08
4726 4810 3.323115 TGTTTGGATTGTAGCCATTGCAA 59.677 39.130 0.00 0.00 41.13 4.08
4727 4811 4.020396 TGTTTGGATTGTAGCCATTGCAAT 60.020 37.500 5.99 5.99 43.62 3.56
4728 4812 3.804786 TGGATTGTAGCCATTGCAATG 57.195 42.857 28.91 28.91 41.42 2.82
4729 4813 3.098377 TGGATTGTAGCCATTGCAATGT 58.902 40.909 31.87 20.13 41.42 2.71
4730 4814 3.130869 TGGATTGTAGCCATTGCAATGTC 59.869 43.478 31.87 23.40 41.42 3.06
4731 4815 3.491447 GGATTGTAGCCATTGCAATGTCC 60.491 47.826 31.87 25.86 41.42 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.060028 TCAGCAACAATTTCTAGTCACAAC 57.940 37.500 0.00 0.00 0.00 3.32
106 107 2.550978 CACCCTGTCAATGATCGGTAC 58.449 52.381 0.00 0.00 0.00 3.34
129 130 8.008279 CGAAGCTATGATATGAACATGACAAAG 58.992 37.037 0.00 0.00 0.00 2.77
141 142 3.620374 GGCCACATCGAAGCTATGATATG 59.380 47.826 0.00 1.19 0.00 1.78
194 195 0.619255 TTCAGGATACCCAAGGGCGA 60.619 55.000 4.70 0.00 39.32 5.54
228 230 3.119602 GCCGCATTGCATCTTCATATCAT 60.120 43.478 9.69 0.00 0.00 2.45
273 275 6.170506 AGTCTTAACCATACGAATTCAGCAA 58.829 36.000 6.22 0.00 0.00 3.91
331 333 0.317770 GCTCAGCTTCCTCGAGATCG 60.318 60.000 15.71 2.08 41.45 3.69
357 359 6.157211 GGAGAAAGAACGTAAACTGATCAGA 58.843 40.000 29.27 3.89 0.00 3.27
358 360 5.348997 GGGAGAAAGAACGTAAACTGATCAG 59.651 44.000 21.37 21.37 0.00 2.90
359 361 5.011738 AGGGAGAAAGAACGTAAACTGATCA 59.988 40.000 0.00 0.00 0.00 2.92
374 376 0.322906 GGGTGGCTGAAGGGAGAAAG 60.323 60.000 0.00 0.00 0.00 2.62
433 435 8.732746 TTACTGAATAAGAAGGTAAATGAGGC 57.267 34.615 0.00 0.00 0.00 4.70
461 463 0.097674 GCTCACAGCATTTGCCTACG 59.902 55.000 0.00 0.00 41.89 3.51
465 467 1.214589 CAGGCTCACAGCATTTGCC 59.785 57.895 0.00 0.00 44.75 4.52
473 475 2.941064 CAATATGGTCACAGGCTCACAG 59.059 50.000 0.00 0.00 0.00 3.66
476 478 3.118408 GGTACAATATGGTCACAGGCTCA 60.118 47.826 0.00 0.00 0.00 4.26
490 492 4.037927 CCTCCCCTTTCTGAGGTACAATA 58.962 47.826 0.00 0.00 44.71 1.90
519 523 7.330946 AGGTTAAAACTTCTTCAGTTGCAAAAC 59.669 33.333 0.00 0.00 45.77 2.43
546 550 4.275196 GTGTCCCAGTAAACAAAAGGACTC 59.725 45.833 8.34 1.47 43.39 3.36
550 554 3.317993 CAGGTGTCCCAGTAAACAAAAGG 59.682 47.826 0.00 0.00 0.00 3.11
560 564 0.104934 AGAGGTTCAGGTGTCCCAGT 60.105 55.000 0.00 0.00 0.00 4.00
627 640 5.523916 ACATATAAACGTCTCAGGTCAATGC 59.476 40.000 0.00 0.00 0.00 3.56
679 692 1.004394 GGCAAACTGTACCCCTTAGCT 59.996 52.381 0.00 0.00 0.00 3.32
776 792 1.672881 GGTGATGCCAAGATAGCACAC 59.327 52.381 0.00 0.00 44.40 3.82
864 880 7.040409 GGTCATGTGGATAACAGAAGAAAAACT 60.040 37.037 0.00 0.00 43.64 2.66
960 976 2.102084 CGATCTCTGGAAATCAGCTCCA 59.898 50.000 0.00 0.00 43.06 3.86
974 990 1.962100 GATCCCCGTTAACCGATCTCT 59.038 52.381 13.74 0.00 39.56 3.10
975 991 1.335689 CGATCCCCGTTAACCGATCTC 60.336 57.143 16.73 3.89 39.56 2.75
1073 1089 3.469008 TCTTCAGCGACAGAGGAAAAA 57.531 42.857 0.00 0.00 0.00 1.94
1394 1410 0.906775 GTTTATCCGGGTCACCCTCA 59.093 55.000 12.38 0.00 42.67 3.86
1445 1461 1.308998 CCTCCCGCAGCGAATTTATT 58.691 50.000 18.75 0.00 0.00 1.40
1513 1529 7.254590 GGTCTATGTACAAGAGTTGCATGAATC 60.255 40.741 0.00 0.00 0.00 2.52
1521 1537 4.081420 AGCAGGGTCTATGTACAAGAGTTG 60.081 45.833 0.00 4.82 0.00 3.16
1537 1553 0.260816 ATGGCATGATCAAGCAGGGT 59.739 50.000 23.12 4.32 0.00 4.34
1673 1690 5.964958 AGTACAAGTTTACAGCTACGGTA 57.035 39.130 0.00 0.00 0.00 4.02
1681 1698 9.616634 TCAATTACTCGTAGTACAAGTTTACAG 57.383 33.333 0.00 0.00 28.93 2.74
1709 1726 2.421424 GAGCCTGCTTTACATGAAGGTG 59.579 50.000 0.00 0.00 32.74 4.00
1877 1901 6.427547 CCCTGAATTTTGAAGCAAGCAAATAA 59.572 34.615 0.00 0.00 35.41 1.40
2191 2216 8.196802 TGATCATAAGATTTTTACCACTGTCG 57.803 34.615 0.00 0.00 33.72 4.35
2312 2338 3.314331 CCCACTCTGGCGTCCTGT 61.314 66.667 0.00 0.00 35.79 4.00
2313 2339 4.767255 GCCCACTCTGGCGTCCTG 62.767 72.222 0.00 0.00 42.54 3.86
2334 2360 0.036010 GCAGCTGATACACCAGTGGT 60.036 55.000 20.43 9.70 36.57 4.16
2462 2488 2.626780 GGTGTGGCCGGCTCTTTTC 61.627 63.158 28.56 9.02 0.00 2.29
2513 2539 1.003112 AACTGATACCGGGCGCAAA 60.003 52.632 10.83 0.00 0.00 3.68
2537 2563 0.249489 CCTTCGGGTCGATGATGGTC 60.249 60.000 0.00 0.00 35.23 4.02
2579 2605 1.589716 AAGCCATCTGTTTCAGCGCC 61.590 55.000 2.29 0.00 0.00 6.53
2621 2647 2.095314 CCGGATGAGATCAGTGATCGAG 60.095 54.545 24.03 13.78 43.17 4.04
2678 2704 5.406649 TGTAAAACAGAACAAAACAGGCTG 58.593 37.500 14.16 14.16 0.00 4.85
2679 2705 5.652994 TGTAAAACAGAACAAAACAGGCT 57.347 34.783 0.00 0.00 0.00 4.58
2715 2741 5.598830 TGGAGAGGAAAACAGGCTATACTAG 59.401 44.000 0.00 0.00 0.00 2.57
2721 2747 3.248024 TCTTGGAGAGGAAAACAGGCTA 58.752 45.455 0.00 0.00 0.00 3.93
2722 2748 2.057922 TCTTGGAGAGGAAAACAGGCT 58.942 47.619 0.00 0.00 0.00 4.58
2755 2781 6.543465 CCTAACATAGCCACATCTCATTTCAA 59.457 38.462 0.00 0.00 0.00 2.69
2774 2800 5.968254 TGCGACACTGTAATTATCCTAACA 58.032 37.500 0.00 0.00 0.00 2.41
2790 2816 3.531538 TCAAAAGGGATATCTGCGACAC 58.468 45.455 2.05 0.00 0.00 3.67
2794 2820 4.697514 TCTTCTCAAAAGGGATATCTGCG 58.302 43.478 2.05 0.00 0.00 5.18
2811 2838 5.991861 ACATGCTGAAATGAGATCTCTTCT 58.008 37.500 22.95 4.09 37.41 2.85
2812 2839 6.093771 ACAACATGCTGAAATGAGATCTCTTC 59.906 38.462 22.95 18.38 0.00 2.87
2813 2840 5.944599 ACAACATGCTGAAATGAGATCTCTT 59.055 36.000 22.95 14.43 0.00 2.85
2814 2841 5.498393 ACAACATGCTGAAATGAGATCTCT 58.502 37.500 22.95 3.32 0.00 3.10
2815 2842 5.814764 ACAACATGCTGAAATGAGATCTC 57.185 39.130 16.21 16.21 0.00 2.75
2816 2843 5.475909 ACAACAACATGCTGAAATGAGATCT 59.524 36.000 2.44 0.00 0.00 2.75
2951 2979 3.084579 GCGATGTGCTCAGTTCCG 58.915 61.111 0.00 0.00 41.73 4.30
3016 3059 3.684305 CACAATCAAACGAGTGGCTCATA 59.316 43.478 0.00 0.00 32.81 2.15
3017 3060 2.485426 CACAATCAAACGAGTGGCTCAT 59.515 45.455 0.00 0.00 32.81 2.90
3045 3088 7.308435 GGAGATTGATAAACTGGAAACAACTG 58.692 38.462 0.00 0.00 42.06 3.16
3046 3089 6.149474 CGGAGATTGATAAACTGGAAACAACT 59.851 38.462 0.00 0.00 42.06 3.16
3047 3090 6.314784 CGGAGATTGATAAACTGGAAACAAC 58.685 40.000 0.00 0.00 42.06 3.32
3048 3091 5.414454 CCGGAGATTGATAAACTGGAAACAA 59.586 40.000 0.00 0.00 42.06 2.83
3049 3092 4.941263 CCGGAGATTGATAAACTGGAAACA 59.059 41.667 0.00 0.00 39.59 2.83
3050 3093 4.201920 GCCGGAGATTGATAAACTGGAAAC 60.202 45.833 5.05 0.00 0.00 2.78
3051 3094 3.945285 GCCGGAGATTGATAAACTGGAAA 59.055 43.478 5.05 0.00 0.00 3.13
3052 3095 3.199946 AGCCGGAGATTGATAAACTGGAA 59.800 43.478 5.05 0.00 0.00 3.53
3053 3096 2.771943 AGCCGGAGATTGATAAACTGGA 59.228 45.455 5.05 0.00 0.00 3.86
3054 3097 2.874701 CAGCCGGAGATTGATAAACTGG 59.125 50.000 5.05 0.00 0.00 4.00
3055 3098 2.874701 CCAGCCGGAGATTGATAAACTG 59.125 50.000 5.05 0.00 0.00 3.16
3056 3099 2.505819 ACCAGCCGGAGATTGATAAACT 59.494 45.455 5.05 0.00 35.59 2.66
3057 3100 2.919228 ACCAGCCGGAGATTGATAAAC 58.081 47.619 5.05 0.00 35.59 2.01
3058 3101 3.644966 AACCAGCCGGAGATTGATAAA 57.355 42.857 5.05 0.00 35.59 1.40
3059 3102 3.278574 CAAACCAGCCGGAGATTGATAA 58.721 45.455 5.05 0.00 35.59 1.75
3060 3103 2.421388 CCAAACCAGCCGGAGATTGATA 60.421 50.000 5.05 0.00 35.59 2.15
3061 3104 1.683011 CCAAACCAGCCGGAGATTGAT 60.683 52.381 5.05 0.00 35.59 2.57
3062 3105 0.322456 CCAAACCAGCCGGAGATTGA 60.322 55.000 5.05 0.00 35.59 2.57
3063 3106 0.609131 ACCAAACCAGCCGGAGATTG 60.609 55.000 5.05 4.02 35.59 2.67
3109 3160 4.003788 ACCAGCACGTCTTCCCCG 62.004 66.667 0.00 0.00 0.00 5.73
3112 3163 1.374758 CCTCACCAGCACGTCTTCC 60.375 63.158 0.00 0.00 0.00 3.46
3232 3283 2.282674 AGGTACACGAGGACGCCA 60.283 61.111 0.00 0.00 43.96 5.69
3294 3345 4.819783 CCTGCAGGTTGTAGGCAA 57.180 55.556 25.53 0.00 43.10 4.52
3319 3370 4.681978 GCCTCCACCGTGTCGCTT 62.682 66.667 0.00 0.00 0.00 4.68
3355 3406 3.664025 CTCGCGGGAGTCAATGGCA 62.664 63.158 20.59 0.00 35.48 4.92
3382 3433 1.305887 AAGTACTACCTGGGCGCCT 60.306 57.895 28.56 9.11 0.00 5.52
3441 3496 5.396484 CACCATCAATCATCAAGAACACAC 58.604 41.667 0.00 0.00 0.00 3.82
3444 3499 4.460034 CACCACCATCAATCATCAAGAACA 59.540 41.667 0.00 0.00 0.00 3.18
3445 3500 4.701651 TCACCACCATCAATCATCAAGAAC 59.298 41.667 0.00 0.00 0.00 3.01
3446 3501 4.920999 TCACCACCATCAATCATCAAGAA 58.079 39.130 0.00 0.00 0.00 2.52
3491 3551 2.125310 CGCACGCCAATGTCCCTA 60.125 61.111 0.00 0.00 0.00 3.53
3539 3599 1.318576 CCTTGAGCCCAACGAACTTT 58.681 50.000 0.00 0.00 0.00 2.66
3720 3780 4.262335 GCCGGTGTATAATTAGCTAGTGGT 60.262 45.833 1.90 0.00 0.00 4.16
3725 3785 3.642377 TGTGGCCGGTGTATAATTAGCTA 59.358 43.478 1.90 0.00 0.00 3.32
3727 3787 2.546789 GTGTGGCCGGTGTATAATTAGC 59.453 50.000 1.90 0.00 0.00 3.09
3741 3801 0.811616 GATCTGTGGATCGTGTGGCC 60.812 60.000 0.00 0.00 38.91 5.36
3742 3802 2.682893 GATCTGTGGATCGTGTGGC 58.317 57.895 0.00 0.00 38.91 5.01
3870 3937 6.485648 AGGCTCGTAGTTTGTAATTGTTTTCT 59.514 34.615 0.00 0.00 0.00 2.52
3901 3968 3.083997 GATCGTCCTGGGCCCAGT 61.084 66.667 42.69 28.68 42.15 4.00
3907 3974 2.009774 GTGTTTGATGATCGTCCTGGG 58.990 52.381 12.42 0.00 0.00 4.45
3911 3978 1.320555 CGTCGTGTTTGATGATCGTCC 59.679 52.381 12.42 0.00 0.00 4.79
3926 3993 2.400158 CCTTCTCTCGGCTCGTCGT 61.400 63.158 0.00 0.00 0.00 4.34
3946 4015 4.222847 CTAGGCGCTTCGTCCCCC 62.223 72.222 7.64 0.00 28.67 5.40
3951 4020 2.044252 TCCTCCTAGGCGCTTCGT 60.044 61.111 7.64 0.00 34.61 3.85
3952 4021 2.725008 CTCCTCCTAGGCGCTTCG 59.275 66.667 7.64 0.00 34.61 3.79
3954 4023 2.060980 CACCTCCTCCTAGGCGCTT 61.061 63.158 7.64 0.52 40.62 4.68
3959 4028 1.834263 CCAAGTTCACCTCCTCCTAGG 59.166 57.143 0.82 0.82 42.82 3.02
4005 4074 4.090057 GAACTCGCCAAGCACGCC 62.090 66.667 0.00 0.00 0.00 5.68
4041 4110 1.730487 CGAGATCCAGACCTCCGTG 59.270 63.158 0.00 0.00 0.00 4.94
4185 4254 2.674380 CTCAAGCAGGTGCACCCC 60.674 66.667 32.29 22.73 45.16 4.95
4200 4269 5.275067 AGATCTACATCTTCAAGGTGCTC 57.725 43.478 0.00 0.00 35.67 4.26
4342 4414 2.188207 GGAGAAGGCGGAGAAGGC 59.812 66.667 0.00 0.00 0.00 4.35
4343 4415 1.681486 GGAGGAGAAGGCGGAGAAGG 61.681 65.000 0.00 0.00 0.00 3.46
4344 4416 1.819905 GGAGGAGAAGGCGGAGAAG 59.180 63.158 0.00 0.00 0.00 2.85
4345 4417 2.052690 CGGAGGAGAAGGCGGAGAA 61.053 63.158 0.00 0.00 0.00 2.87
4346 4418 2.440430 CGGAGGAGAAGGCGGAGA 60.440 66.667 0.00 0.00 0.00 3.71
4347 4419 4.214327 GCGGAGGAGAAGGCGGAG 62.214 72.222 0.00 0.00 0.00 4.63
4453 4535 1.372748 CAGCGCTCTCCGATCATCC 60.373 63.158 7.13 0.00 40.02 3.51
4505 4589 3.562182 CCCGCAAACCCCTCTATAAATT 58.438 45.455 0.00 0.00 0.00 1.82
4519 4603 1.905843 CCAATCACACCCCCGCAAA 60.906 57.895 0.00 0.00 0.00 3.68
4520 4604 2.282816 CCAATCACACCCCCGCAA 60.283 61.111 0.00 0.00 0.00 4.85
4523 4607 2.361104 CCACCAATCACACCCCCG 60.361 66.667 0.00 0.00 0.00 5.73
4565 4649 3.061905 GCCTGGGATCCTTCCACCC 62.062 68.421 12.58 0.00 44.60 4.61
4578 4662 2.572095 TAGCAACATCGGACGCCTGG 62.572 60.000 0.00 0.00 0.00 4.45
4593 4677 1.207089 CCTCAATCCTCACCGTTAGCA 59.793 52.381 0.00 0.00 0.00 3.49
4595 4679 1.139058 CCCCTCAATCCTCACCGTTAG 59.861 57.143 0.00 0.00 0.00 2.34
4597 4681 1.991230 CCCCTCAATCCTCACCGTT 59.009 57.895 0.00 0.00 0.00 4.44
4613 4697 1.893062 GGCTCAATCCAAACAGCCC 59.107 57.895 0.00 0.00 45.04 5.19
4615 4699 0.968405 TTGGGCTCAATCCAAACAGC 59.032 50.000 0.00 0.00 40.88 4.40
4624 4708 0.337428 AGGGCAAGATTGGGCTCAAT 59.663 50.000 12.79 12.79 45.45 2.57
4625 4709 0.998928 TAGGGCAAGATTGGGCTCAA 59.001 50.000 0.00 0.00 37.28 3.02
4626 4710 0.255890 GTAGGGCAAGATTGGGCTCA 59.744 55.000 0.00 0.00 31.24 4.26
4627 4711 0.466372 GGTAGGGCAAGATTGGGCTC 60.466 60.000 0.00 0.00 0.00 4.70
4628 4712 1.214305 TGGTAGGGCAAGATTGGGCT 61.214 55.000 0.00 0.00 0.00 5.19
4629 4713 0.324275 TTGGTAGGGCAAGATTGGGC 60.324 55.000 0.00 0.00 0.00 5.36
4630 4714 2.230130 TTTGGTAGGGCAAGATTGGG 57.770 50.000 0.00 0.00 0.00 4.12
4655 4739 1.607801 GCCCTGGAATTGGTCTTGCC 61.608 60.000 0.00 0.00 37.90 4.52
4656 4740 0.899717 TGCCCTGGAATTGGTCTTGC 60.900 55.000 0.00 0.00 0.00 4.01
4657 4741 1.856629 ATGCCCTGGAATTGGTCTTG 58.143 50.000 0.00 0.00 0.00 3.02
4658 4742 3.205056 TCATATGCCCTGGAATTGGTCTT 59.795 43.478 0.00 0.00 0.00 3.01
4659 4743 2.785269 TCATATGCCCTGGAATTGGTCT 59.215 45.455 0.00 0.00 0.00 3.85
4660 4744 2.887152 GTCATATGCCCTGGAATTGGTC 59.113 50.000 0.00 0.00 0.00 4.02
4661 4745 2.424812 GGTCATATGCCCTGGAATTGGT 60.425 50.000 0.00 0.00 0.00 3.67
4662 4746 2.242043 GGTCATATGCCCTGGAATTGG 58.758 52.381 0.00 0.00 0.00 3.16
4663 4747 2.948115 TGGTCATATGCCCTGGAATTG 58.052 47.619 4.12 0.00 0.00 2.32
4664 4748 3.686227 TTGGTCATATGCCCTGGAATT 57.314 42.857 4.12 0.00 0.00 2.17
4665 4749 3.686227 TTTGGTCATATGCCCTGGAAT 57.314 42.857 4.12 0.00 0.00 3.01
4666 4750 3.464720 TTTTGGTCATATGCCCTGGAA 57.535 42.857 4.12 0.00 0.00 3.53
4667 4751 3.464720 TTTTTGGTCATATGCCCTGGA 57.535 42.857 4.12 0.00 0.00 3.86
4684 4768 0.250424 GCCATGCCTTGCCAGTTTTT 60.250 50.000 0.00 0.00 0.00 1.94
4685 4769 1.123246 AGCCATGCCTTGCCAGTTTT 61.123 50.000 0.00 0.00 0.00 2.43
4686 4770 1.534717 AGCCATGCCTTGCCAGTTT 60.535 52.632 0.00 0.00 0.00 2.66
4687 4771 2.118951 AGCCATGCCTTGCCAGTT 59.881 55.556 0.00 0.00 0.00 3.16
4688 4772 2.678934 CAGCCATGCCTTGCCAGT 60.679 61.111 0.00 0.00 0.00 4.00
4689 4773 1.823169 AAACAGCCATGCCTTGCCAG 61.823 55.000 0.00 0.00 0.00 4.85
4690 4774 1.837947 AAACAGCCATGCCTTGCCA 60.838 52.632 0.00 0.00 0.00 4.92
4691 4775 1.375013 CAAACAGCCATGCCTTGCC 60.375 57.895 0.00 0.00 0.00 4.52
4692 4776 1.375013 CCAAACAGCCATGCCTTGC 60.375 57.895 0.00 0.00 0.00 4.01
4693 4777 0.899720 ATCCAAACAGCCATGCCTTG 59.100 50.000 0.00 0.00 0.00 3.61
4694 4778 1.276989 CAATCCAAACAGCCATGCCTT 59.723 47.619 0.00 0.00 0.00 4.35
4695 4779 0.899720 CAATCCAAACAGCCATGCCT 59.100 50.000 0.00 0.00 0.00 4.75
4696 4780 0.609662 ACAATCCAAACAGCCATGCC 59.390 50.000 0.00 0.00 0.00 4.40
4697 4781 2.736400 GCTACAATCCAAACAGCCATGC 60.736 50.000 0.00 0.00 0.00 4.06
4698 4782 3.155093 GCTACAATCCAAACAGCCATG 57.845 47.619 0.00 0.00 0.00 3.66
4702 4786 3.514645 CAATGGCTACAATCCAAACAGC 58.485 45.455 0.00 0.00 37.13 4.40
4703 4787 3.056678 TGCAATGGCTACAATCCAAACAG 60.057 43.478 0.00 0.00 41.91 3.16
4704 4788 2.896044 TGCAATGGCTACAATCCAAACA 59.104 40.909 0.00 0.00 41.91 2.83
4705 4789 3.591196 TGCAATGGCTACAATCCAAAC 57.409 42.857 0.00 0.00 41.91 2.93
4706 4790 4.020396 ACATTGCAATGGCTACAATCCAAA 60.020 37.500 35.85 0.00 40.70 3.28
4707 4791 3.514706 ACATTGCAATGGCTACAATCCAA 59.485 39.130 35.85 0.00 40.70 3.53
4708 4792 3.098377 ACATTGCAATGGCTACAATCCA 58.902 40.909 35.85 0.00 40.70 3.41
4709 4793 3.491447 GGACATTGCAATGGCTACAATCC 60.491 47.826 37.30 28.34 44.06 3.01
4710 4794 3.709987 GGACATTGCAATGGCTACAATC 58.290 45.455 37.30 24.54 44.06 2.67
4711 4795 3.806625 GGACATTGCAATGGCTACAAT 57.193 42.857 37.30 18.79 44.06 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.