Multiple sequence alignment - TraesCS1B01G294500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G294500 chr1B 100.000 2447 0 0 1 2447 512629655 512632101 0.000000e+00 4519.0
1 TraesCS1B01G294500 chr1B 87.083 480 42 13 1001 1465 641523608 641523134 2.160000e-145 525.0
2 TraesCS1B01G294500 chr1B 89.583 144 12 2 658 800 150372906 150373047 1.930000e-41 180.0
3 TraesCS1B01G294500 chr1B 89.286 140 11 3 661 799 150370479 150370343 3.230000e-39 172.0
4 TraesCS1B01G294500 chr1D 94.106 1544 68 12 797 2331 382719596 382721125 0.000000e+00 2326.0
5 TraesCS1B01G294500 chr1A 91.637 1686 92 20 795 2447 482767786 482769455 0.000000e+00 2287.0
6 TraesCS1B01G294500 chr6D 93.470 536 21 5 260 795 105578240 105578761 0.000000e+00 784.0
7 TraesCS1B01G294500 chr3D 89.827 462 33 7 1001 1449 45064615 45064155 4.540000e-162 580.0
8 TraesCS1B01G294500 chr3D 90.585 393 23 6 1054 1445 36822456 36822835 2.170000e-140 508.0
9 TraesCS1B01G294500 chr3D 89.059 393 29 8 1054 1445 50658417 50658038 2.200000e-130 475.0
10 TraesCS1B01G294500 chr4D 90.000 450 34 8 1012 1457 30195053 30195495 2.730000e-159 571.0
11 TraesCS1B01G294500 chrUn 90.842 404 20 5 1054 1456 69362380 69362767 2.160000e-145 525.0
12 TraesCS1B01G294500 chr3A 91.444 374 21 9 1075 1447 605180133 605179770 1.010000e-138 503.0
13 TraesCS1B01G294500 chr3A 86.590 261 17 7 16 259 109872443 109872184 3.100000e-69 272.0
14 TraesCS1B01G294500 chr3B 98.456 259 4 0 1 259 85346189 85346447 7.980000e-125 457.0
15 TraesCS1B01G294500 chr3B 95.802 262 10 1 1 262 781354137 781354397 2.910000e-114 422.0
16 TraesCS1B01G294500 chr4A 96.629 267 9 0 1 267 726567618 726567884 6.210000e-121 444.0
17 TraesCS1B01G294500 chr4A 87.814 279 20 9 1 267 726661526 726661250 5.080000e-82 315.0
18 TraesCS1B01G294500 chr4A 83.636 275 31 10 1 265 2907421 2907151 1.880000e-61 246.0
19 TraesCS1B01G294500 chr7B 95.785 261 11 0 1 261 582699820 582700080 2.910000e-114 422.0
20 TraesCS1B01G294500 chr7A 90.794 315 15 5 260 572 94533559 94533861 2.260000e-110 409.0
21 TraesCS1B01G294500 chr7A 95.299 234 9 1 563 796 94533896 94534127 1.070000e-98 370.0
22 TraesCS1B01G294500 chr7A 92.135 178 8 3 83 260 317899714 317899885 1.880000e-61 246.0
23 TraesCS1B01G294500 chr7A 89.286 140 12 2 658 796 31810987 31811124 3.230000e-39 172.0
24 TraesCS1B01G294500 chr6B 94.595 259 13 1 1 259 300670831 300670574 1.360000e-107 399.0
25 TraesCS1B01G294500 chr6B 89.286 140 12 2 658 796 532354199 532354336 3.230000e-39 172.0
26 TraesCS1B01G294500 chr5A 89.902 307 17 5 260 564 522698746 522699040 1.370000e-102 383.0
27 TraesCS1B01G294500 chr5A 95.726 234 8 1 563 796 522699079 522699310 2.300000e-100 375.0
28 TraesCS1B01G294500 chr5A 89.286 140 12 2 661 799 22977246 22977109 3.230000e-39 172.0
29 TraesCS1B01G294500 chr2A 89.781 137 11 2 661 796 180211931 180211797 3.230000e-39 172.0
30 TraesCS1B01G294500 chr2D 87.879 66 5 3 347 410 501306501 501306437 9.380000e-10 75.0
31 TraesCS1B01G294500 chr5B 82.500 80 11 2 1 80 350397782 350397706 1.570000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G294500 chr1B 512629655 512632101 2446 False 4519.0 4519 100.0000 1 2447 1 chr1B.!!$F2 2446
1 TraesCS1B01G294500 chr1D 382719596 382721125 1529 False 2326.0 2326 94.1060 797 2331 1 chr1D.!!$F1 1534
2 TraesCS1B01G294500 chr1A 482767786 482769455 1669 False 2287.0 2287 91.6370 795 2447 1 chr1A.!!$F1 1652
3 TraesCS1B01G294500 chr6D 105578240 105578761 521 False 784.0 784 93.4700 260 795 1 chr6D.!!$F1 535
4 TraesCS1B01G294500 chr7A 94533559 94534127 568 False 389.5 409 93.0465 260 796 2 chr7A.!!$F3 536
5 TraesCS1B01G294500 chr5A 522698746 522699310 564 False 379.0 383 92.8140 260 796 2 chr5A.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.035056 GAGGAGGGTGACATGGGTTG 60.035 60.0 0.0 0.0 0.0 3.77 F
207 208 0.249280 ACACAGATCGCACGACACAA 60.249 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1277 1.006805 GGAGGAGATGCCGATGTCG 60.007 63.158 0.0 0.0 43.43 4.35 R
1472 1531 1.007011 CGATCATCAAACACGACGAGC 60.007 52.381 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.125147 CGGAGCTCCAAATCGCCA 60.125 61.111 31.67 0.00 35.14 5.69
21 22 1.524621 CGGAGCTCCAAATCGCCAT 60.525 57.895 31.67 0.00 35.14 4.40
22 23 1.779025 CGGAGCTCCAAATCGCCATG 61.779 60.000 31.67 8.04 35.14 3.66
23 24 1.450531 GGAGCTCCAAATCGCCATGG 61.451 60.000 28.43 7.63 38.09 3.66
24 25 2.068277 GAGCTCCAAATCGCCATGGC 62.068 60.000 27.67 27.67 36.62 4.40
25 26 2.417257 GCTCCAAATCGCCATGGCA 61.417 57.895 34.93 22.41 42.06 4.92
26 27 1.947597 GCTCCAAATCGCCATGGCAA 61.948 55.000 34.93 20.39 42.06 4.52
27 28 0.748450 CTCCAAATCGCCATGGCAAT 59.252 50.000 34.93 21.97 42.06 3.56
28 29 0.746063 TCCAAATCGCCATGGCAATC 59.254 50.000 34.93 7.30 42.06 2.67
29 30 0.748450 CCAAATCGCCATGGCAATCT 59.252 50.000 34.93 7.80 42.06 2.40
30 31 1.269413 CCAAATCGCCATGGCAATCTC 60.269 52.381 34.93 6.11 42.06 2.75
31 32 1.679680 CAAATCGCCATGGCAATCTCT 59.320 47.619 34.93 12.04 42.06 3.10
32 33 1.602311 AATCGCCATGGCAATCTCTC 58.398 50.000 34.93 4.54 42.06 3.20
33 34 0.763652 ATCGCCATGGCAATCTCTCT 59.236 50.000 34.93 7.91 42.06 3.10
34 35 0.105593 TCGCCATGGCAATCTCTCTC 59.894 55.000 34.93 2.99 42.06 3.20
35 36 0.106335 CGCCATGGCAATCTCTCTCT 59.894 55.000 34.93 0.00 42.06 3.10
36 37 1.873069 CGCCATGGCAATCTCTCTCTC 60.873 57.143 34.93 2.22 42.06 3.20
37 38 1.873069 GCCATGGCAATCTCTCTCTCG 60.873 57.143 32.08 0.00 41.49 4.04
38 39 1.500108 CATGGCAATCTCTCTCTCGC 58.500 55.000 0.00 0.00 0.00 5.03
39 40 1.068895 CATGGCAATCTCTCTCTCGCT 59.931 52.381 0.00 0.00 0.00 4.93
40 41 0.743688 TGGCAATCTCTCTCTCGCTC 59.256 55.000 0.00 0.00 0.00 5.03
41 42 0.317770 GGCAATCTCTCTCTCGCTCG 60.318 60.000 0.00 0.00 0.00 5.03
42 43 0.660488 GCAATCTCTCTCTCGCTCGA 59.340 55.000 0.00 0.00 0.00 4.04
43 44 1.596954 GCAATCTCTCTCTCGCTCGAC 60.597 57.143 0.00 0.00 0.00 4.20
44 45 1.939934 CAATCTCTCTCTCGCTCGACT 59.060 52.381 0.00 0.00 0.00 4.18
45 46 1.865865 ATCTCTCTCTCGCTCGACTC 58.134 55.000 0.00 0.00 0.00 3.36
46 47 0.821517 TCTCTCTCTCGCTCGACTCT 59.178 55.000 0.00 0.00 0.00 3.24
47 48 2.025898 TCTCTCTCTCGCTCGACTCTA 58.974 52.381 0.00 0.00 0.00 2.43
48 49 2.626266 TCTCTCTCTCGCTCGACTCTAT 59.374 50.000 0.00 0.00 0.00 1.98
49 50 3.069016 TCTCTCTCTCGCTCGACTCTATT 59.931 47.826 0.00 0.00 0.00 1.73
50 51 3.386486 TCTCTCTCGCTCGACTCTATTC 58.614 50.000 0.00 0.00 0.00 1.75
51 52 2.128821 TCTCTCGCTCGACTCTATTCG 58.871 52.381 0.00 0.00 40.53 3.34
52 53 1.193650 CTCTCGCTCGACTCTATTCGG 59.806 57.143 0.00 0.00 39.58 4.30
53 54 0.236187 CTCGCTCGACTCTATTCGGG 59.764 60.000 0.00 0.00 42.76 5.14
54 55 1.164662 TCGCTCGACTCTATTCGGGG 61.165 60.000 0.00 0.00 40.05 5.73
55 56 1.445716 CGCTCGACTCTATTCGGGGT 61.446 60.000 0.00 0.00 40.05 4.95
56 57 0.745468 GCTCGACTCTATTCGGGGTT 59.255 55.000 0.00 0.00 40.05 4.11
57 58 1.536284 GCTCGACTCTATTCGGGGTTG 60.536 57.143 0.00 0.00 40.05 3.77
58 59 0.458669 TCGACTCTATTCGGGGTTGC 59.541 55.000 0.00 0.00 39.58 4.17
59 60 0.870307 CGACTCTATTCGGGGTTGCG 60.870 60.000 0.00 0.00 35.26 4.85
60 61 0.175073 GACTCTATTCGGGGTTGCGT 59.825 55.000 0.00 0.00 0.00 5.24
61 62 0.108329 ACTCTATTCGGGGTTGCGTG 60.108 55.000 0.00 0.00 0.00 5.34
62 63 0.108329 CTCTATTCGGGGTTGCGTGT 60.108 55.000 0.00 0.00 0.00 4.49
63 64 0.322322 TCTATTCGGGGTTGCGTGTT 59.678 50.000 0.00 0.00 0.00 3.32
64 65 1.161843 CTATTCGGGGTTGCGTGTTT 58.838 50.000 0.00 0.00 0.00 2.83
65 66 1.538075 CTATTCGGGGTTGCGTGTTTT 59.462 47.619 0.00 0.00 0.00 2.43
66 67 1.606903 ATTCGGGGTTGCGTGTTTTA 58.393 45.000 0.00 0.00 0.00 1.52
67 68 1.386533 TTCGGGGTTGCGTGTTTTAA 58.613 45.000 0.00 0.00 0.00 1.52
68 69 0.945813 TCGGGGTTGCGTGTTTTAAG 59.054 50.000 0.00 0.00 0.00 1.85
69 70 0.664224 CGGGGTTGCGTGTTTTAAGT 59.336 50.000 0.00 0.00 0.00 2.24
70 71 1.334329 CGGGGTTGCGTGTTTTAAGTC 60.334 52.381 0.00 0.00 0.00 3.01
71 72 1.677052 GGGGTTGCGTGTTTTAAGTCA 59.323 47.619 0.00 0.00 0.00 3.41
72 73 2.542205 GGGGTTGCGTGTTTTAAGTCAC 60.542 50.000 3.13 3.13 0.00 3.67
73 74 2.097791 GGGTTGCGTGTTTTAAGTCACA 59.902 45.455 10.94 0.00 34.66 3.58
74 75 3.427773 GGGTTGCGTGTTTTAAGTCACAA 60.428 43.478 10.94 0.00 34.66 3.33
75 76 4.167268 GGTTGCGTGTTTTAAGTCACAAA 58.833 39.130 10.94 4.22 34.66 2.83
76 77 4.264380 GGTTGCGTGTTTTAAGTCACAAAG 59.736 41.667 10.94 0.96 34.66 2.77
77 78 4.022464 TGCGTGTTTTAAGTCACAAAGG 57.978 40.909 10.94 0.00 34.66 3.11
78 79 3.181495 TGCGTGTTTTAAGTCACAAAGGG 60.181 43.478 10.94 0.00 34.66 3.95
79 80 3.794138 GCGTGTTTTAAGTCACAAAGGGG 60.794 47.826 10.94 0.00 34.66 4.79
80 81 3.713288 GTGTTTTAAGTCACAAAGGGGC 58.287 45.455 7.07 0.00 35.04 5.80
81 82 3.383505 GTGTTTTAAGTCACAAAGGGGCT 59.616 43.478 7.07 0.00 35.04 5.19
82 83 3.383185 TGTTTTAAGTCACAAAGGGGCTG 59.617 43.478 0.00 0.00 0.00 4.85
83 84 2.286365 TTAAGTCACAAAGGGGCTGG 57.714 50.000 0.00 0.00 0.00 4.85
84 85 0.404040 TAAGTCACAAAGGGGCTGGG 59.596 55.000 0.00 0.00 0.00 4.45
85 86 1.360393 AAGTCACAAAGGGGCTGGGA 61.360 55.000 0.00 0.00 0.00 4.37
86 87 1.303643 GTCACAAAGGGGCTGGGAG 60.304 63.158 0.00 0.00 0.00 4.30
87 88 2.036256 CACAAAGGGGCTGGGAGG 59.964 66.667 0.00 0.00 0.00 4.30
88 89 2.121506 ACAAAGGGGCTGGGAGGA 60.122 61.111 0.00 0.00 0.00 3.71
89 90 2.234296 ACAAAGGGGCTGGGAGGAG 61.234 63.158 0.00 0.00 0.00 3.69
90 91 2.615288 AAAGGGGCTGGGAGGAGG 60.615 66.667 0.00 0.00 0.00 4.30
91 92 3.208342 AAAGGGGCTGGGAGGAGGA 62.208 63.158 0.00 0.00 0.00 3.71
92 93 3.649652 AAGGGGCTGGGAGGAGGAG 62.650 68.421 0.00 0.00 0.00 3.69
95 96 4.423209 GGCTGGGAGGAGGAGGGT 62.423 72.222 0.00 0.00 0.00 4.34
96 97 3.086600 GCTGGGAGGAGGAGGGTG 61.087 72.222 0.00 0.00 0.00 4.61
97 98 2.780693 CTGGGAGGAGGAGGGTGA 59.219 66.667 0.00 0.00 0.00 4.02
98 99 1.687493 CTGGGAGGAGGAGGGTGAC 60.687 68.421 0.00 0.00 0.00 3.67
99 100 2.450243 GGGAGGAGGAGGGTGACA 59.550 66.667 0.00 0.00 0.00 3.58
100 101 1.003573 GGGAGGAGGAGGGTGACAT 59.996 63.158 0.00 0.00 0.00 3.06
101 102 1.341156 GGGAGGAGGAGGGTGACATG 61.341 65.000 0.00 0.00 0.00 3.21
102 103 1.341156 GGAGGAGGAGGGTGACATGG 61.341 65.000 0.00 0.00 0.00 3.66
103 104 1.307343 AGGAGGAGGGTGACATGGG 60.307 63.158 0.00 0.00 0.00 4.00
104 105 1.616628 GGAGGAGGGTGACATGGGT 60.617 63.158 0.00 0.00 0.00 4.51
105 106 1.208165 GGAGGAGGGTGACATGGGTT 61.208 60.000 0.00 0.00 0.00 4.11
106 107 0.035056 GAGGAGGGTGACATGGGTTG 60.035 60.000 0.00 0.00 0.00 3.77
107 108 1.678970 GGAGGGTGACATGGGTTGC 60.679 63.158 0.00 0.00 0.00 4.17
108 109 2.034066 AGGGTGACATGGGTTGCG 59.966 61.111 0.00 0.00 0.00 4.85
109 110 2.033448 GGGTGACATGGGTTGCGA 59.967 61.111 0.00 0.00 0.00 5.10
110 111 1.378514 GGGTGACATGGGTTGCGAT 60.379 57.895 0.00 0.00 0.00 4.58
111 112 1.656818 GGGTGACATGGGTTGCGATG 61.657 60.000 0.00 0.00 0.00 3.84
112 113 0.676466 GGTGACATGGGTTGCGATGA 60.676 55.000 0.00 0.00 0.00 2.92
113 114 1.164411 GTGACATGGGTTGCGATGAA 58.836 50.000 0.00 0.00 0.00 2.57
114 115 1.539388 GTGACATGGGTTGCGATGAAA 59.461 47.619 0.00 0.00 0.00 2.69
115 116 2.030363 GTGACATGGGTTGCGATGAAAA 60.030 45.455 0.00 0.00 0.00 2.29
116 117 2.625314 TGACATGGGTTGCGATGAAAAA 59.375 40.909 0.00 0.00 0.00 1.94
135 136 3.994204 AAAATAACGGGTCAACCACAC 57.006 42.857 0.89 0.00 40.22 3.82
154 155 0.375803 CGGGCCCGATAAAAGAAACG 59.624 55.000 41.82 6.56 42.83 3.60
155 156 1.741528 GGGCCCGATAAAAGAAACGA 58.258 50.000 5.69 0.00 0.00 3.85
156 157 1.669265 GGGCCCGATAAAAGAAACGAG 59.331 52.381 5.69 0.00 0.00 4.18
157 158 2.624636 GGCCCGATAAAAGAAACGAGA 58.375 47.619 0.00 0.00 0.00 4.04
158 159 2.350804 GGCCCGATAAAAGAAACGAGAC 59.649 50.000 0.00 0.00 0.00 3.36
159 160 2.997986 GCCCGATAAAAGAAACGAGACA 59.002 45.455 0.00 0.00 0.00 3.41
160 161 3.434299 GCCCGATAAAAGAAACGAGACAA 59.566 43.478 0.00 0.00 0.00 3.18
161 162 4.083696 GCCCGATAAAAGAAACGAGACAAA 60.084 41.667 0.00 0.00 0.00 2.83
162 163 5.561339 GCCCGATAAAAGAAACGAGACAAAA 60.561 40.000 0.00 0.00 0.00 2.44
163 164 6.608610 CCCGATAAAAGAAACGAGACAAAAT 58.391 36.000 0.00 0.00 0.00 1.82
164 165 7.624764 GCCCGATAAAAGAAACGAGACAAAATA 60.625 37.037 0.00 0.00 0.00 1.40
165 166 8.231837 CCCGATAAAAGAAACGAGACAAAATAA 58.768 33.333 0.00 0.00 0.00 1.40
166 167 9.047871 CCGATAAAAGAAACGAGACAAAATAAC 57.952 33.333 0.00 0.00 0.00 1.89
167 168 8.764030 CGATAAAAGAAACGAGACAAAATAACG 58.236 33.333 0.00 0.00 0.00 3.18
168 169 8.944212 ATAAAAGAAACGAGACAAAATAACGG 57.056 30.769 0.00 0.00 0.00 4.44
169 170 5.352643 AAGAAACGAGACAAAATAACGGG 57.647 39.130 0.00 0.00 0.00 5.28
170 171 4.383173 AGAAACGAGACAAAATAACGGGT 58.617 39.130 0.00 0.00 0.00 5.28
171 172 4.450080 AGAAACGAGACAAAATAACGGGTC 59.550 41.667 0.00 0.00 0.00 4.46
172 173 3.389925 ACGAGACAAAATAACGGGTCA 57.610 42.857 0.00 0.00 32.79 4.02
173 174 3.062042 ACGAGACAAAATAACGGGTCAC 58.938 45.455 0.00 0.00 32.79 3.67
174 175 3.061322 CGAGACAAAATAACGGGTCACA 58.939 45.455 0.00 0.00 32.79 3.58
175 176 3.120786 CGAGACAAAATAACGGGTCACAC 60.121 47.826 0.00 0.00 32.79 3.82
176 177 3.810941 GAGACAAAATAACGGGTCACACA 59.189 43.478 0.00 0.00 32.79 3.72
177 178 3.562557 AGACAAAATAACGGGTCACACAC 59.437 43.478 0.00 0.00 32.79 3.82
185 186 3.906660 GGGTCACACACGAATCTCA 57.093 52.632 0.00 0.00 0.00 3.27
186 187 1.714794 GGGTCACACACGAATCTCAG 58.285 55.000 0.00 0.00 0.00 3.35
187 188 1.071605 GGTCACACACGAATCTCAGC 58.928 55.000 0.00 0.00 0.00 4.26
188 189 1.605457 GGTCACACACGAATCTCAGCA 60.605 52.381 0.00 0.00 0.00 4.41
189 190 1.457303 GTCACACACGAATCTCAGCAC 59.543 52.381 0.00 0.00 0.00 4.40
190 191 1.068434 TCACACACGAATCTCAGCACA 59.932 47.619 0.00 0.00 0.00 4.57
191 192 1.193203 CACACACGAATCTCAGCACAC 59.807 52.381 0.00 0.00 0.00 3.82
192 193 1.202521 ACACACGAATCTCAGCACACA 60.203 47.619 0.00 0.00 0.00 3.72
193 194 1.458445 CACACGAATCTCAGCACACAG 59.542 52.381 0.00 0.00 0.00 3.66
194 195 1.341209 ACACGAATCTCAGCACACAGA 59.659 47.619 0.00 0.00 0.00 3.41
195 196 2.028658 ACACGAATCTCAGCACACAGAT 60.029 45.455 0.00 0.00 0.00 2.90
196 197 2.602211 CACGAATCTCAGCACACAGATC 59.398 50.000 0.00 0.00 0.00 2.75
197 198 1.851053 CGAATCTCAGCACACAGATCG 59.149 52.381 0.00 0.00 0.00 3.69
198 199 1.592081 GAATCTCAGCACACAGATCGC 59.408 52.381 0.00 0.00 0.00 4.58
199 200 0.533951 ATCTCAGCACACAGATCGCA 59.466 50.000 0.00 0.00 0.00 5.10
200 201 0.389037 TCTCAGCACACAGATCGCAC 60.389 55.000 0.00 0.00 0.00 5.34
201 202 1.681025 CTCAGCACACAGATCGCACG 61.681 60.000 0.00 0.00 0.00 5.34
202 203 1.734117 CAGCACACAGATCGCACGA 60.734 57.895 0.00 0.00 0.00 4.35
203 204 1.734477 AGCACACAGATCGCACGAC 60.734 57.895 0.00 0.00 0.00 4.34
204 205 2.021584 GCACACAGATCGCACGACA 61.022 57.895 0.00 0.00 0.00 4.35
205 206 1.775344 CACACAGATCGCACGACAC 59.225 57.895 0.00 0.00 0.00 3.67
206 207 0.939106 CACACAGATCGCACGACACA 60.939 55.000 0.00 0.00 0.00 3.72
207 208 0.249280 ACACAGATCGCACGACACAA 60.249 50.000 0.00 0.00 0.00 3.33
208 209 0.858583 CACAGATCGCACGACACAAA 59.141 50.000 0.00 0.00 0.00 2.83
209 210 1.260297 CACAGATCGCACGACACAAAA 59.740 47.619 0.00 0.00 0.00 2.44
210 211 1.937223 ACAGATCGCACGACACAAAAA 59.063 42.857 0.00 0.00 0.00 1.94
229 230 3.915437 AAACGGATGAAAGCGAATTGT 57.085 38.095 0.00 0.00 0.00 2.71
230 231 3.915437 AACGGATGAAAGCGAATTGTT 57.085 38.095 0.00 0.00 0.00 2.83
231 232 3.915437 ACGGATGAAAGCGAATTGTTT 57.085 38.095 0.00 0.00 0.00 2.83
232 233 4.237349 ACGGATGAAAGCGAATTGTTTT 57.763 36.364 0.00 0.00 33.27 2.43
233 234 4.226761 ACGGATGAAAGCGAATTGTTTTC 58.773 39.130 3.25 3.25 45.09 2.29
238 239 4.806056 GAAAGCGAATTGTTTTCATCCG 57.194 40.909 5.14 0.00 44.48 4.18
239 240 2.919666 AGCGAATTGTTTTCATCCGG 57.080 45.000 0.00 0.00 0.00 5.14
240 241 2.432444 AGCGAATTGTTTTCATCCGGA 58.568 42.857 6.61 6.61 0.00 5.14
241 242 3.016736 AGCGAATTGTTTTCATCCGGAT 58.983 40.909 12.38 12.38 0.00 4.18
242 243 3.108144 GCGAATTGTTTTCATCCGGATG 58.892 45.455 34.42 34.42 40.09 3.51
243 244 3.427503 GCGAATTGTTTTCATCCGGATGT 60.428 43.478 36.95 20.02 39.72 3.06
244 245 4.201871 GCGAATTGTTTTCATCCGGATGTA 60.202 41.667 36.95 28.55 39.72 2.29
245 246 5.675071 GCGAATTGTTTTCATCCGGATGTAA 60.675 40.000 36.95 31.93 39.72 2.41
246 247 6.318628 CGAATTGTTTTCATCCGGATGTAAA 58.681 36.000 36.95 34.83 39.72 2.01
247 248 6.972328 CGAATTGTTTTCATCCGGATGTAAAT 59.028 34.615 36.45 26.49 39.23 1.40
248 249 7.487829 CGAATTGTTTTCATCCGGATGTAAATT 59.512 33.333 36.45 30.88 39.23 1.82
249 250 9.796120 GAATTGTTTTCATCCGGATGTAAATTA 57.204 29.630 36.45 29.29 39.23 1.40
250 251 9.801873 AATTGTTTTCATCCGGATGTAAATTAG 57.198 29.630 36.45 17.34 39.23 1.73
251 252 6.791303 TGTTTTCATCCGGATGTAAATTAGC 58.209 36.000 36.45 27.57 39.23 3.09
252 253 6.375736 TGTTTTCATCCGGATGTAAATTAGCA 59.624 34.615 36.45 29.14 39.23 3.49
253 254 6.618287 TTTCATCCGGATGTAAATTAGCAG 57.382 37.500 36.95 13.19 39.72 4.24
254 255 5.545063 TCATCCGGATGTAAATTAGCAGA 57.455 39.130 36.95 15.80 39.72 4.26
255 256 6.114187 TCATCCGGATGTAAATTAGCAGAT 57.886 37.500 36.95 0.37 39.72 2.90
256 257 6.166279 TCATCCGGATGTAAATTAGCAGATC 58.834 40.000 36.95 0.00 39.72 2.75
257 258 4.894784 TCCGGATGTAAATTAGCAGATCC 58.105 43.478 0.00 0.00 0.00 3.36
258 259 4.910746 CGGATGTAAATTAGCAGATCCG 57.089 45.455 14.62 14.62 44.45 4.18
269 270 7.506328 AATTAGCAGATCCGTTATTTTACCC 57.494 36.000 0.00 0.00 0.00 3.69
289 290 3.865446 CCGTAACTAATCGGGTTTCCTT 58.135 45.455 0.00 0.00 42.61 3.36
300 301 2.226912 CGGGTTTCCTTGCAACGATTAA 59.773 45.455 0.00 0.00 0.00 1.40
352 353 5.941733 CTGATACATGCAGCTTGTTGTTAA 58.058 37.500 18.36 1.55 0.00 2.01
384 385 2.096496 GGCTAGTACATGCAGCTTGTTG 59.904 50.000 18.36 8.56 35.60 3.33
415 417 6.790285 AAAAAGAAAGTAAATGCATGCAGG 57.210 33.333 26.69 0.00 0.00 4.85
416 418 3.515330 AGAAAGTAAATGCATGCAGGC 57.485 42.857 26.69 18.05 0.00 4.85
551 554 6.090628 TGTTGTTGTTTTTCTCTTGATTGCAC 59.909 34.615 0.00 0.00 0.00 4.57
619 666 8.765219 CGTGTCAATTATTCCCAAGAATAGTAG 58.235 37.037 0.00 0.00 43.98 2.57
709 756 2.736400 GCTACAATCCAAACAGCCATGC 60.736 50.000 0.00 0.00 0.00 4.06
717 764 1.823169 AAACAGCCATGCCTTGCCAG 61.823 55.000 0.00 0.00 0.00 4.85
751 798 1.607801 GCCCTGGAATTGGTCTTGCC 61.608 60.000 0.00 0.00 37.90 4.52
809 856 1.991230 CCCCTCAATCCTCACCGTT 59.009 57.895 0.00 0.00 0.00 4.44
811 858 1.139058 CCCCTCAATCCTCACCGTTAG 59.861 57.143 0.00 0.00 0.00 2.34
813 860 1.207089 CCTCAATCCTCACCGTTAGCA 59.793 52.381 0.00 0.00 0.00 3.49
828 875 2.572095 TAGCAACATCGGACGCCTGG 62.572 60.000 0.00 0.00 0.00 4.45
841 888 3.061905 GCCTGGGATCCTTCCACCC 62.062 68.421 12.58 0.00 44.60 4.61
883 930 2.361104 CCACCAATCACACCCCCG 60.361 66.667 0.00 0.00 0.00 5.73
885 932 3.575247 ACCAATCACACCCCCGCA 61.575 61.111 0.00 0.00 0.00 5.69
886 933 2.282816 CCAATCACACCCCCGCAA 60.283 61.111 0.00 0.00 0.00 4.85
887 934 1.905843 CCAATCACACCCCCGCAAA 60.906 57.895 0.00 0.00 0.00 3.68
901 948 3.562182 CCCGCAAACCCCTCTATAAATT 58.438 45.455 0.00 0.00 0.00 1.82
953 1002 1.372748 CAGCGCTCTCCGATCATCC 60.373 63.158 7.13 0.00 40.02 3.51
1206 1262 5.275067 AGATCTACATCTTCAAGGTGCTC 57.725 43.478 0.00 0.00 35.67 4.26
1221 1277 2.674380 CTCAAGCAGGTGCACCCC 60.674 66.667 32.29 22.73 45.16 4.95
1365 1421 1.730487 CGAGATCCAGACCTCCGTG 59.270 63.158 0.00 0.00 0.00 4.94
1401 1457 4.090057 GAACTCGCCAAGCACGCC 62.090 66.667 0.00 0.00 0.00 5.68
1447 1503 1.834263 CCAAGTTCACCTCCTCCTAGG 59.166 57.143 0.82 0.82 42.82 3.02
1452 1508 2.060980 CACCTCCTCCTAGGCGCTT 61.061 63.158 7.64 0.52 40.62 4.68
1480 1539 2.400158 CCTTCTCTCGGCTCGTCGT 61.400 63.158 0.00 0.00 0.00 4.34
1495 1554 1.320555 CGTCGTGTTTGATGATCGTCC 59.679 52.381 12.42 0.00 0.00 4.79
1499 1558 2.009774 GTGTTTGATGATCGTCCTGGG 58.990 52.381 12.42 0.00 0.00 4.45
1505 1564 3.083997 GATCGTCCTGGGCCCAGT 61.084 66.667 42.69 28.68 42.15 4.00
1536 1595 6.485648 AGGCTCGTAGTTTGTAATTGTTTTCT 59.514 34.615 0.00 0.00 0.00 2.52
1664 1730 2.682893 GATCTGTGGATCGTGTGGC 58.317 57.895 0.00 0.00 38.91 5.01
1665 1731 0.811616 GATCTGTGGATCGTGTGGCC 60.812 60.000 0.00 0.00 38.91 5.36
1679 1745 2.546789 GTGTGGCCGGTGTATAATTAGC 59.453 50.000 1.90 0.00 0.00 3.09
1681 1747 3.642377 TGTGGCCGGTGTATAATTAGCTA 59.358 43.478 1.90 0.00 0.00 3.32
1686 1752 4.262335 GCCGGTGTATAATTAGCTAGTGGT 60.262 45.833 1.90 0.00 0.00 4.16
1867 1933 1.318576 CCTTGAGCCCAACGAACTTT 58.681 50.000 0.00 0.00 0.00 2.66
1915 1981 2.125310 CGCACGCCAATGTCCCTA 60.125 61.111 0.00 0.00 0.00 3.53
1965 2033 5.396484 CACCATCAATCATCAAGAACACAC 58.604 41.667 0.00 0.00 0.00 3.82
2024 2096 1.305887 AAGTACTACCTGGGCGCCT 60.306 57.895 28.56 9.11 0.00 5.52
2051 2123 3.664025 CTCGCGGGAGTCAATGGCA 62.664 63.158 20.59 0.00 35.48 4.92
2087 2159 4.681978 GCCTCCACCGTGTCGCTT 62.682 66.667 0.00 0.00 0.00 4.68
2112 2184 4.819783 CCTGCAGGTTGTAGGCAA 57.180 55.556 25.53 0.00 43.10 4.52
2174 2246 2.282674 AGGTACACGAGGACGCCA 60.283 61.111 0.00 0.00 43.96 5.69
2294 2366 1.374758 CCTCACCAGCACGTCTTCC 60.375 63.158 0.00 0.00 0.00 3.46
2297 2369 4.003788 ACCAGCACGTCTTCCCCG 62.004 66.667 0.00 0.00 0.00 5.73
2334 2406 1.219646 CACATTTGCACCAAACCAGC 58.780 50.000 0.00 0.00 36.13 4.85
2335 2407 0.106521 ACATTTGCACCAAACCAGCC 59.893 50.000 0.00 0.00 36.13 4.85
2336 2408 0.945265 CATTTGCACCAAACCAGCCG 60.945 55.000 0.00 0.00 36.13 5.52
2339 2411 3.365265 GCACCAAACCAGCCGGAG 61.365 66.667 5.05 0.00 35.59 4.63
2340 2412 2.429930 CACCAAACCAGCCGGAGA 59.570 61.111 5.05 0.00 35.59 3.71
2341 2413 1.002134 CACCAAACCAGCCGGAGAT 60.002 57.895 5.05 0.00 35.59 2.75
2342 2414 0.609131 CACCAAACCAGCCGGAGATT 60.609 55.000 5.05 0.00 35.59 2.40
2343 2415 0.609131 ACCAAACCAGCCGGAGATTG 60.609 55.000 5.05 4.02 35.59 2.67
2344 2416 0.322456 CCAAACCAGCCGGAGATTGA 60.322 55.000 5.05 0.00 35.59 2.57
2345 2417 1.683011 CCAAACCAGCCGGAGATTGAT 60.683 52.381 5.05 0.00 35.59 2.57
2346 2418 2.421388 CCAAACCAGCCGGAGATTGATA 60.421 50.000 5.05 0.00 35.59 2.15
2347 2419 3.278574 CAAACCAGCCGGAGATTGATAA 58.721 45.455 5.05 0.00 35.59 1.75
2349 2421 2.919228 ACCAGCCGGAGATTGATAAAC 58.081 47.619 5.05 0.00 35.59 2.01
2351 2423 2.874701 CCAGCCGGAGATTGATAAACTG 59.125 50.000 5.05 0.00 0.00 3.16
2352 2424 2.874701 CAGCCGGAGATTGATAAACTGG 59.125 50.000 5.05 0.00 0.00 4.00
2353 2425 2.771943 AGCCGGAGATTGATAAACTGGA 59.228 45.455 5.05 0.00 0.00 3.86
2354 2426 3.199946 AGCCGGAGATTGATAAACTGGAA 59.800 43.478 5.05 0.00 0.00 3.53
2355 2427 3.945285 GCCGGAGATTGATAAACTGGAAA 59.055 43.478 5.05 0.00 0.00 3.13
2356 2428 4.201920 GCCGGAGATTGATAAACTGGAAAC 60.202 45.833 5.05 0.00 0.00 2.78
2357 2429 4.941263 CCGGAGATTGATAAACTGGAAACA 59.059 41.667 0.00 0.00 39.59 2.83
2358 2430 5.414454 CCGGAGATTGATAAACTGGAAACAA 59.586 40.000 0.00 0.00 42.06 2.83
2359 2431 6.314784 CGGAGATTGATAAACTGGAAACAAC 58.685 40.000 0.00 0.00 42.06 3.32
2360 2432 6.149474 CGGAGATTGATAAACTGGAAACAACT 59.851 38.462 0.00 0.00 42.06 3.16
2361 2433 7.308435 GGAGATTGATAAACTGGAAACAACTG 58.692 38.462 0.00 0.00 42.06 3.16
2389 2461 2.485426 CACAATCAAACGAGTGGCTCAT 59.515 45.455 0.00 0.00 32.81 2.90
2390 2462 3.684305 CACAATCAAACGAGTGGCTCATA 59.316 43.478 0.00 0.00 32.81 2.15
2421 2507 7.335422 TCTGCCAGAGAAACAGAATAAGAATTC 59.665 37.037 0.00 0.00 41.65 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.187946 CGATTTGGAGCTCCGCCT 59.812 61.111 27.43 14.05 39.43 5.52
1 2 3.577313 GCGATTTGGAGCTCCGCC 61.577 66.667 27.43 14.60 39.97 6.13
2 3 3.577313 GGCGATTTGGAGCTCCGC 61.577 66.667 27.43 24.07 44.45 5.54
3 4 1.524621 ATGGCGATTTGGAGCTCCG 60.525 57.895 27.43 15.91 39.43 4.63
4 5 1.450531 CCATGGCGATTTGGAGCTCC 61.451 60.000 26.78 26.78 34.81 4.70
5 6 2.028130 CCATGGCGATTTGGAGCTC 58.972 57.895 4.71 4.71 34.81 4.09
6 7 2.123428 GCCATGGCGATTTGGAGCT 61.123 57.895 23.48 0.00 34.81 4.09
7 8 1.947597 TTGCCATGGCGATTTGGAGC 61.948 55.000 30.87 4.24 45.51 4.70
8 9 0.748450 ATTGCCATGGCGATTTGGAG 59.252 50.000 30.72 0.00 42.12 3.86
9 10 0.746063 GATTGCCATGGCGATTTGGA 59.254 50.000 35.10 13.58 44.55 3.53
10 11 0.748450 AGATTGCCATGGCGATTTGG 59.252 50.000 35.10 0.00 44.55 3.28
11 12 1.679680 AGAGATTGCCATGGCGATTTG 59.320 47.619 35.10 0.00 44.55 2.32
12 13 1.952296 GAGAGATTGCCATGGCGATTT 59.048 47.619 35.10 30.71 44.55 2.17
13 14 1.142465 AGAGAGATTGCCATGGCGATT 59.858 47.619 35.10 25.18 44.55 3.34
14 15 0.763652 AGAGAGATTGCCATGGCGAT 59.236 50.000 35.31 35.31 46.94 4.58
15 16 0.105593 GAGAGAGATTGCCATGGCGA 59.894 55.000 28.97 28.97 45.51 5.54
16 17 0.106335 AGAGAGAGATTGCCATGGCG 59.894 55.000 30.87 0.00 45.51 5.69
17 18 1.873069 CGAGAGAGAGATTGCCATGGC 60.873 57.143 30.54 30.54 42.35 4.40
18 19 1.873069 GCGAGAGAGAGATTGCCATGG 60.873 57.143 7.63 7.63 0.00 3.66
19 20 1.068895 AGCGAGAGAGAGATTGCCATG 59.931 52.381 0.00 0.00 0.00 3.66
20 21 1.340889 GAGCGAGAGAGAGATTGCCAT 59.659 52.381 0.00 0.00 0.00 4.40
21 22 0.743688 GAGCGAGAGAGAGATTGCCA 59.256 55.000 0.00 0.00 0.00 4.92
22 23 0.317770 CGAGCGAGAGAGAGATTGCC 60.318 60.000 0.00 0.00 0.00 4.52
23 24 0.660488 TCGAGCGAGAGAGAGATTGC 59.340 55.000 0.00 0.00 0.00 3.56
24 25 1.939934 AGTCGAGCGAGAGAGAGATTG 59.060 52.381 0.00 0.00 0.00 2.67
25 26 2.158957 AGAGTCGAGCGAGAGAGAGATT 60.159 50.000 0.00 0.00 0.00 2.40
26 27 1.412710 AGAGTCGAGCGAGAGAGAGAT 59.587 52.381 0.00 0.00 0.00 2.75
27 28 0.821517 AGAGTCGAGCGAGAGAGAGA 59.178 55.000 0.00 0.00 0.00 3.10
28 29 2.502213 TAGAGTCGAGCGAGAGAGAG 57.498 55.000 0.00 0.00 0.00 3.20
29 30 3.386486 GAATAGAGTCGAGCGAGAGAGA 58.614 50.000 0.00 0.00 0.00 3.10
30 31 2.154963 CGAATAGAGTCGAGCGAGAGAG 59.845 54.545 0.00 0.00 43.86 3.20
31 32 2.128821 CGAATAGAGTCGAGCGAGAGA 58.871 52.381 0.00 0.00 43.86 3.10
32 33 1.193650 CCGAATAGAGTCGAGCGAGAG 59.806 57.143 0.20 0.00 43.86 3.20
33 34 1.218763 CCGAATAGAGTCGAGCGAGA 58.781 55.000 0.20 0.00 43.86 4.04
34 35 0.236187 CCCGAATAGAGTCGAGCGAG 59.764 60.000 0.20 0.00 43.86 5.03
35 36 1.164662 CCCCGAATAGAGTCGAGCGA 61.165 60.000 0.20 0.00 43.86 4.93
36 37 1.283181 CCCCGAATAGAGTCGAGCG 59.717 63.158 0.20 0.00 43.86 5.03
37 38 0.745468 AACCCCGAATAGAGTCGAGC 59.255 55.000 0.20 0.00 43.86 5.03
38 39 1.536284 GCAACCCCGAATAGAGTCGAG 60.536 57.143 0.20 0.00 43.86 4.04
39 40 0.458669 GCAACCCCGAATAGAGTCGA 59.541 55.000 0.20 0.00 43.86 4.20
40 41 0.870307 CGCAACCCCGAATAGAGTCG 60.870 60.000 0.00 0.00 40.77 4.18
41 42 0.175073 ACGCAACCCCGAATAGAGTC 59.825 55.000 0.00 0.00 0.00 3.36
42 43 0.108329 CACGCAACCCCGAATAGAGT 60.108 55.000 0.00 0.00 0.00 3.24
43 44 0.108329 ACACGCAACCCCGAATAGAG 60.108 55.000 0.00 0.00 0.00 2.43
44 45 0.322322 AACACGCAACCCCGAATAGA 59.678 50.000 0.00 0.00 0.00 1.98
45 46 1.161843 AAACACGCAACCCCGAATAG 58.838 50.000 0.00 0.00 0.00 1.73
46 47 1.606903 AAAACACGCAACCCCGAATA 58.393 45.000 0.00 0.00 0.00 1.75
47 48 1.606903 TAAAACACGCAACCCCGAAT 58.393 45.000 0.00 0.00 0.00 3.34
48 49 1.334243 CTTAAAACACGCAACCCCGAA 59.666 47.619 0.00 0.00 0.00 4.30
49 50 0.945813 CTTAAAACACGCAACCCCGA 59.054 50.000 0.00 0.00 0.00 5.14
50 51 0.664224 ACTTAAAACACGCAACCCCG 59.336 50.000 0.00 0.00 0.00 5.73
51 52 1.677052 TGACTTAAAACACGCAACCCC 59.323 47.619 0.00 0.00 0.00 4.95
52 53 2.097791 TGTGACTTAAAACACGCAACCC 59.902 45.455 0.00 0.00 39.52 4.11
53 54 3.408288 TGTGACTTAAAACACGCAACC 57.592 42.857 0.00 0.00 39.52 3.77
54 55 4.264380 CCTTTGTGACTTAAAACACGCAAC 59.736 41.667 0.00 0.00 39.52 4.17
55 56 4.416620 CCTTTGTGACTTAAAACACGCAA 58.583 39.130 0.00 0.00 39.52 4.85
56 57 3.181495 CCCTTTGTGACTTAAAACACGCA 60.181 43.478 0.00 0.00 39.52 5.24
57 58 3.368495 CCCTTTGTGACTTAAAACACGC 58.632 45.455 0.00 0.00 39.52 5.34
58 59 3.794138 GCCCCTTTGTGACTTAAAACACG 60.794 47.826 0.00 0.00 39.52 4.49
59 60 3.383505 AGCCCCTTTGTGACTTAAAACAC 59.616 43.478 0.00 0.00 37.51 3.32
60 61 3.383185 CAGCCCCTTTGTGACTTAAAACA 59.617 43.478 0.00 0.00 0.00 2.83
61 62 3.243737 CCAGCCCCTTTGTGACTTAAAAC 60.244 47.826 0.00 0.00 0.00 2.43
62 63 2.962421 CCAGCCCCTTTGTGACTTAAAA 59.038 45.455 0.00 0.00 0.00 1.52
63 64 2.593026 CCAGCCCCTTTGTGACTTAAA 58.407 47.619 0.00 0.00 0.00 1.52
64 65 1.203001 CCCAGCCCCTTTGTGACTTAA 60.203 52.381 0.00 0.00 0.00 1.85
65 66 0.404040 CCCAGCCCCTTTGTGACTTA 59.596 55.000 0.00 0.00 0.00 2.24
66 67 1.153756 CCCAGCCCCTTTGTGACTT 59.846 57.895 0.00 0.00 0.00 3.01
67 68 1.774217 TCCCAGCCCCTTTGTGACT 60.774 57.895 0.00 0.00 0.00 3.41
68 69 1.303643 CTCCCAGCCCCTTTGTGAC 60.304 63.158 0.00 0.00 0.00 3.67
69 70 2.538141 CCTCCCAGCCCCTTTGTGA 61.538 63.158 0.00 0.00 0.00 3.58
70 71 2.036256 CCTCCCAGCCCCTTTGTG 59.964 66.667 0.00 0.00 0.00 3.33
71 72 2.121506 TCCTCCCAGCCCCTTTGT 60.122 61.111 0.00 0.00 0.00 2.83
72 73 2.679716 CTCCTCCCAGCCCCTTTG 59.320 66.667 0.00 0.00 0.00 2.77
73 74 2.615288 CCTCCTCCCAGCCCCTTT 60.615 66.667 0.00 0.00 0.00 3.11
74 75 3.626596 TCCTCCTCCCAGCCCCTT 61.627 66.667 0.00 0.00 0.00 3.95
75 76 4.101077 CTCCTCCTCCCAGCCCCT 62.101 72.222 0.00 0.00 0.00 4.79
78 79 4.423209 ACCCTCCTCCTCCCAGCC 62.423 72.222 0.00 0.00 0.00 4.85
79 80 3.086600 CACCCTCCTCCTCCCAGC 61.087 72.222 0.00 0.00 0.00 4.85
80 81 1.687493 GTCACCCTCCTCCTCCCAG 60.687 68.421 0.00 0.00 0.00 4.45
81 82 1.826384 ATGTCACCCTCCTCCTCCCA 61.826 60.000 0.00 0.00 0.00 4.37
82 83 1.003573 ATGTCACCCTCCTCCTCCC 59.996 63.158 0.00 0.00 0.00 4.30
83 84 1.341156 CCATGTCACCCTCCTCCTCC 61.341 65.000 0.00 0.00 0.00 4.30
84 85 1.341156 CCCATGTCACCCTCCTCCTC 61.341 65.000 0.00 0.00 0.00 3.71
85 86 1.307343 CCCATGTCACCCTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
86 87 1.208165 AACCCATGTCACCCTCCTCC 61.208 60.000 0.00 0.00 0.00 4.30
87 88 0.035056 CAACCCATGTCACCCTCCTC 60.035 60.000 0.00 0.00 0.00 3.71
88 89 2.078452 CAACCCATGTCACCCTCCT 58.922 57.895 0.00 0.00 0.00 3.69
89 90 1.678970 GCAACCCATGTCACCCTCC 60.679 63.158 0.00 0.00 0.00 4.30
90 91 2.040544 CGCAACCCATGTCACCCTC 61.041 63.158 0.00 0.00 0.00 4.30
91 92 1.852157 ATCGCAACCCATGTCACCCT 61.852 55.000 0.00 0.00 0.00 4.34
92 93 1.378514 ATCGCAACCCATGTCACCC 60.379 57.895 0.00 0.00 0.00 4.61
93 94 0.676466 TCATCGCAACCCATGTCACC 60.676 55.000 0.00 0.00 0.00 4.02
94 95 1.164411 TTCATCGCAACCCATGTCAC 58.836 50.000 0.00 0.00 0.00 3.67
95 96 1.902938 TTTCATCGCAACCCATGTCA 58.097 45.000 0.00 0.00 0.00 3.58
96 97 3.296322 TTTTTCATCGCAACCCATGTC 57.704 42.857 0.00 0.00 0.00 3.06
114 115 3.243134 CGTGTGGTTGACCCGTTATTTTT 60.243 43.478 0.00 0.00 35.15 1.94
115 116 2.291190 CGTGTGGTTGACCCGTTATTTT 59.709 45.455 0.00 0.00 35.15 1.82
116 117 1.874872 CGTGTGGTTGACCCGTTATTT 59.125 47.619 0.00 0.00 35.15 1.40
117 118 1.515081 CGTGTGGTTGACCCGTTATT 58.485 50.000 0.00 0.00 35.15 1.40
118 119 0.320946 CCGTGTGGTTGACCCGTTAT 60.321 55.000 0.00 0.00 35.15 1.89
119 120 1.069427 CCGTGTGGTTGACCCGTTA 59.931 57.895 0.00 0.00 35.15 3.18
120 121 2.203098 CCGTGTGGTTGACCCGTT 60.203 61.111 0.00 0.00 35.15 4.44
121 122 4.244463 CCCGTGTGGTTGACCCGT 62.244 66.667 0.00 0.00 35.15 5.28
127 128 2.806503 TTATCGGGCCCGTGTGGTTG 62.807 60.000 41.57 13.72 40.74 3.77
128 129 2.127027 TTTATCGGGCCCGTGTGGTT 62.127 55.000 41.57 22.31 40.74 3.67
129 130 2.127027 TTTTATCGGGCCCGTGTGGT 62.127 55.000 41.57 24.79 40.74 4.16
130 131 1.373590 CTTTTATCGGGCCCGTGTGG 61.374 60.000 41.57 23.50 40.74 4.17
131 132 0.391927 TCTTTTATCGGGCCCGTGTG 60.392 55.000 41.57 25.22 40.74 3.82
132 133 0.325602 TTCTTTTATCGGGCCCGTGT 59.674 50.000 41.57 31.88 40.74 4.49
133 134 1.131693 GTTTCTTTTATCGGGCCCGTG 59.868 52.381 41.57 24.25 40.74 4.94
134 135 1.456296 GTTTCTTTTATCGGGCCCGT 58.544 50.000 41.57 30.11 40.74 5.28
135 136 0.375803 CGTTTCTTTTATCGGGCCCG 59.624 55.000 39.13 39.13 41.35 6.13
136 137 1.669265 CTCGTTTCTTTTATCGGGCCC 59.331 52.381 13.57 13.57 0.00 5.80
137 138 2.350804 GTCTCGTTTCTTTTATCGGGCC 59.649 50.000 0.00 0.00 0.00 5.80
138 139 2.997986 TGTCTCGTTTCTTTTATCGGGC 59.002 45.455 0.00 0.00 0.00 6.13
139 140 5.600908 TTTGTCTCGTTTCTTTTATCGGG 57.399 39.130 0.00 0.00 0.00 5.14
140 141 9.047871 GTTATTTTGTCTCGTTTCTTTTATCGG 57.952 33.333 0.00 0.00 0.00 4.18
141 142 8.764030 CGTTATTTTGTCTCGTTTCTTTTATCG 58.236 33.333 0.00 0.00 0.00 2.92
142 143 9.047871 CCGTTATTTTGTCTCGTTTCTTTTATC 57.952 33.333 0.00 0.00 0.00 1.75
143 144 8.019094 CCCGTTATTTTGTCTCGTTTCTTTTAT 58.981 33.333 0.00 0.00 0.00 1.40
144 145 7.012232 ACCCGTTATTTTGTCTCGTTTCTTTTA 59.988 33.333 0.00 0.00 0.00 1.52
145 146 6.183360 ACCCGTTATTTTGTCTCGTTTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
146 147 5.297527 ACCCGTTATTTTGTCTCGTTTCTTT 59.702 36.000 0.00 0.00 0.00 2.52
147 148 4.818005 ACCCGTTATTTTGTCTCGTTTCTT 59.182 37.500 0.00 0.00 0.00 2.52
148 149 4.383173 ACCCGTTATTTTGTCTCGTTTCT 58.617 39.130 0.00 0.00 0.00 2.52
149 150 4.211794 TGACCCGTTATTTTGTCTCGTTTC 59.788 41.667 0.00 0.00 0.00 2.78
150 151 4.024641 GTGACCCGTTATTTTGTCTCGTTT 60.025 41.667 0.00 0.00 0.00 3.60
151 152 3.495753 GTGACCCGTTATTTTGTCTCGTT 59.504 43.478 0.00 0.00 0.00 3.85
152 153 3.062042 GTGACCCGTTATTTTGTCTCGT 58.938 45.455 0.00 0.00 0.00 4.18
153 154 3.061322 TGTGACCCGTTATTTTGTCTCG 58.939 45.455 0.00 0.00 0.00 4.04
154 155 3.810941 TGTGTGACCCGTTATTTTGTCTC 59.189 43.478 0.00 0.00 0.00 3.36
155 156 3.562557 GTGTGTGACCCGTTATTTTGTCT 59.437 43.478 0.00 0.00 0.00 3.41
156 157 3.605231 CGTGTGTGACCCGTTATTTTGTC 60.605 47.826 0.00 0.00 0.00 3.18
157 158 2.288458 CGTGTGTGACCCGTTATTTTGT 59.712 45.455 0.00 0.00 0.00 2.83
158 159 2.544686 TCGTGTGTGACCCGTTATTTTG 59.455 45.455 0.00 0.00 0.00 2.44
159 160 2.836262 TCGTGTGTGACCCGTTATTTT 58.164 42.857 0.00 0.00 0.00 1.82
160 161 2.529780 TCGTGTGTGACCCGTTATTT 57.470 45.000 0.00 0.00 0.00 1.40
161 162 2.529780 TTCGTGTGTGACCCGTTATT 57.470 45.000 0.00 0.00 0.00 1.40
162 163 2.232941 AGATTCGTGTGTGACCCGTTAT 59.767 45.455 0.00 0.00 0.00 1.89
163 164 1.614903 AGATTCGTGTGTGACCCGTTA 59.385 47.619 0.00 0.00 0.00 3.18
164 165 0.391597 AGATTCGTGTGTGACCCGTT 59.608 50.000 0.00 0.00 0.00 4.44
165 166 0.038526 GAGATTCGTGTGTGACCCGT 60.039 55.000 0.00 0.00 0.00 5.28
166 167 0.038618 TGAGATTCGTGTGTGACCCG 60.039 55.000 0.00 0.00 0.00 5.28
167 168 1.714794 CTGAGATTCGTGTGTGACCC 58.285 55.000 0.00 0.00 0.00 4.46
168 169 1.071605 GCTGAGATTCGTGTGTGACC 58.928 55.000 0.00 0.00 0.00 4.02
169 170 1.457303 GTGCTGAGATTCGTGTGTGAC 59.543 52.381 0.00 0.00 0.00 3.67
170 171 1.068434 TGTGCTGAGATTCGTGTGTGA 59.932 47.619 0.00 0.00 0.00 3.58
171 172 1.193203 GTGTGCTGAGATTCGTGTGTG 59.807 52.381 0.00 0.00 0.00 3.82
172 173 1.202521 TGTGTGCTGAGATTCGTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
173 174 1.458445 CTGTGTGCTGAGATTCGTGTG 59.542 52.381 0.00 0.00 0.00 3.82
174 175 1.341209 TCTGTGTGCTGAGATTCGTGT 59.659 47.619 0.00 0.00 0.00 4.49
175 176 2.070262 TCTGTGTGCTGAGATTCGTG 57.930 50.000 0.00 0.00 0.00 4.35
176 177 2.733542 CGATCTGTGTGCTGAGATTCGT 60.734 50.000 0.00 0.00 0.00 3.85
177 178 1.851053 CGATCTGTGTGCTGAGATTCG 59.149 52.381 0.00 0.00 0.00 3.34
178 179 1.592081 GCGATCTGTGTGCTGAGATTC 59.408 52.381 0.00 0.00 0.00 2.52
179 180 1.066645 TGCGATCTGTGTGCTGAGATT 60.067 47.619 0.00 0.00 0.00 2.40
180 181 0.533951 TGCGATCTGTGTGCTGAGAT 59.466 50.000 0.00 0.00 0.00 2.75
181 182 0.389037 GTGCGATCTGTGTGCTGAGA 60.389 55.000 0.00 0.00 0.00 3.27
182 183 1.681025 CGTGCGATCTGTGTGCTGAG 61.681 60.000 0.00 0.00 0.00 3.35
183 184 1.734117 CGTGCGATCTGTGTGCTGA 60.734 57.895 0.00 0.00 0.00 4.26
184 185 1.734117 TCGTGCGATCTGTGTGCTG 60.734 57.895 0.00 0.00 0.00 4.41
185 186 1.734477 GTCGTGCGATCTGTGTGCT 60.734 57.895 0.00 0.00 0.00 4.40
186 187 2.021584 TGTCGTGCGATCTGTGTGC 61.022 57.895 0.00 0.00 0.00 4.57
187 188 0.939106 TGTGTCGTGCGATCTGTGTG 60.939 55.000 0.00 0.00 0.00 3.82
188 189 0.249280 TTGTGTCGTGCGATCTGTGT 60.249 50.000 0.00 0.00 0.00 3.72
189 190 0.858583 TTTGTGTCGTGCGATCTGTG 59.141 50.000 0.00 0.00 0.00 3.66
190 191 1.577468 TTTTGTGTCGTGCGATCTGT 58.423 45.000 0.00 0.00 0.00 3.41
191 192 2.661504 TTTTTGTGTCGTGCGATCTG 57.338 45.000 0.00 0.00 0.00 2.90
207 208 4.616953 ACAATTCGCTTTCATCCGTTTTT 58.383 34.783 0.00 0.00 0.00 1.94
208 209 4.237349 ACAATTCGCTTTCATCCGTTTT 57.763 36.364 0.00 0.00 0.00 2.43
209 210 3.915437 ACAATTCGCTTTCATCCGTTT 57.085 38.095 0.00 0.00 0.00 3.60
210 211 3.915437 AACAATTCGCTTTCATCCGTT 57.085 38.095 0.00 0.00 0.00 4.44
211 212 3.915437 AAACAATTCGCTTTCATCCGT 57.085 38.095 0.00 0.00 0.00 4.69
212 213 4.225984 TGAAAACAATTCGCTTTCATCCG 58.774 39.130 3.21 0.00 35.32 4.18
216 217 4.225984 CGGATGAAAACAATTCGCTTTCA 58.774 39.130 8.00 8.00 42.34 2.69
217 218 3.608073 CCGGATGAAAACAATTCGCTTTC 59.392 43.478 0.00 0.00 31.53 2.62
218 219 3.254657 TCCGGATGAAAACAATTCGCTTT 59.745 39.130 0.00 0.00 0.00 3.51
219 220 2.817258 TCCGGATGAAAACAATTCGCTT 59.183 40.909 0.00 0.00 0.00 4.68
220 221 2.432444 TCCGGATGAAAACAATTCGCT 58.568 42.857 0.00 0.00 0.00 4.93
221 222 2.911819 TCCGGATGAAAACAATTCGC 57.088 45.000 0.00 0.00 0.00 4.70
222 223 4.355543 ACATCCGGATGAAAACAATTCG 57.644 40.909 43.42 18.34 41.20 3.34
223 224 8.702163 AATTTACATCCGGATGAAAACAATTC 57.298 30.769 43.42 0.00 41.20 2.17
224 225 9.801873 CTAATTTACATCCGGATGAAAACAATT 57.198 29.630 43.42 33.20 41.20 2.32
225 226 7.920682 GCTAATTTACATCCGGATGAAAACAAT 59.079 33.333 43.42 28.37 41.20 2.71
226 227 7.094162 TGCTAATTTACATCCGGATGAAAACAA 60.094 33.333 43.42 27.65 41.20 2.83
227 228 6.375736 TGCTAATTTACATCCGGATGAAAACA 59.624 34.615 43.42 28.04 41.20 2.83
228 229 6.791303 TGCTAATTTACATCCGGATGAAAAC 58.209 36.000 43.42 26.52 41.20 2.43
229 230 6.826231 TCTGCTAATTTACATCCGGATGAAAA 59.174 34.615 43.42 32.58 41.20 2.29
230 231 6.353323 TCTGCTAATTTACATCCGGATGAAA 58.647 36.000 43.42 34.62 41.20 2.69
231 232 5.924356 TCTGCTAATTTACATCCGGATGAA 58.076 37.500 43.42 30.47 41.20 2.57
232 233 5.545063 TCTGCTAATTTACATCCGGATGA 57.455 39.130 43.42 26.21 41.20 2.92
233 234 5.352569 GGATCTGCTAATTTACATCCGGATG 59.647 44.000 37.23 37.23 44.15 3.51
234 235 5.491982 GGATCTGCTAATTTACATCCGGAT 58.508 41.667 12.38 12.38 0.00 4.18
235 236 4.560716 CGGATCTGCTAATTTACATCCGGA 60.561 45.833 6.61 6.61 45.90 5.14
236 237 3.679980 CGGATCTGCTAATTTACATCCGG 59.320 47.826 9.78 0.00 45.90 5.14
237 238 4.910746 CGGATCTGCTAATTTACATCCG 57.089 45.455 3.92 3.92 44.86 4.18
238 239 7.907214 ATAACGGATCTGCTAATTTACATCC 57.093 36.000 0.00 0.00 0.00 3.51
242 243 9.874215 GGTAAAATAACGGATCTGCTAATTTAC 57.126 33.333 18.99 18.99 0.00 2.01
243 244 9.059260 GGGTAAAATAACGGATCTGCTAATTTA 57.941 33.333 0.00 1.51 0.00 1.40
244 245 7.255001 CGGGTAAAATAACGGATCTGCTAATTT 60.255 37.037 0.00 2.49 0.00 1.82
245 246 6.204108 CGGGTAAAATAACGGATCTGCTAATT 59.796 38.462 0.00 0.00 0.00 1.40
246 247 5.699458 CGGGTAAAATAACGGATCTGCTAAT 59.301 40.000 0.00 0.00 0.00 1.73
247 248 5.051816 CGGGTAAAATAACGGATCTGCTAA 58.948 41.667 0.00 0.00 0.00 3.09
248 249 4.099881 ACGGGTAAAATAACGGATCTGCTA 59.900 41.667 0.00 0.00 0.00 3.49
249 250 3.118519 ACGGGTAAAATAACGGATCTGCT 60.119 43.478 0.00 0.00 0.00 4.24
250 251 3.200483 ACGGGTAAAATAACGGATCTGC 58.800 45.455 0.00 0.00 0.00 4.26
251 252 6.044682 AGTTACGGGTAAAATAACGGATCTG 58.955 40.000 0.00 0.00 34.63 2.90
252 253 6.225981 AGTTACGGGTAAAATAACGGATCT 57.774 37.500 0.00 0.00 34.63 2.75
253 254 8.593492 ATTAGTTACGGGTAAAATAACGGATC 57.407 34.615 0.00 0.00 34.63 3.36
254 255 7.382218 CGATTAGTTACGGGTAAAATAACGGAT 59.618 37.037 0.00 0.00 34.63 4.18
255 256 6.695278 CGATTAGTTACGGGTAAAATAACGGA 59.305 38.462 0.00 0.00 34.63 4.69
256 257 6.074356 CCGATTAGTTACGGGTAAAATAACGG 60.074 42.308 0.00 0.00 44.59 4.44
257 258 6.866347 CCGATTAGTTACGGGTAAAATAACG 58.134 40.000 0.00 0.00 44.59 3.18
269 270 3.063045 GCAAGGAAACCCGATTAGTTACG 59.937 47.826 0.00 0.00 0.00 3.18
289 290 1.268352 GGGCAGTTGTTAATCGTTGCA 59.732 47.619 7.11 0.00 33.42 4.08
300 301 1.611491 CCGTTAACAATGGGCAGTTGT 59.389 47.619 6.39 1.47 41.28 3.32
413 415 1.067354 GCTAAAACAAGCTGCATGCCT 60.067 47.619 16.68 2.40 44.23 4.75
414 416 1.337074 TGCTAAAACAAGCTGCATGCC 60.337 47.619 16.68 0.00 43.19 4.40
415 417 2.068837 TGCTAAAACAAGCTGCATGC 57.931 45.000 11.82 11.82 43.19 4.06
416 418 5.406767 TTTTTGCTAAAACAAGCTGCATG 57.593 34.783 1.02 2.07 43.19 4.06
441 443 8.768019 GCTTCATGCATTTACTTTTCTTTCTTT 58.232 29.630 0.00 0.00 42.31 2.52
464 466 2.034687 AGCCGCAGAACCATGCTT 59.965 55.556 0.00 0.00 44.24 3.91
728 775 3.569491 CAAGACCAATTCCAGGGCATAT 58.431 45.455 0.00 0.00 36.27 1.78
729 776 2.949963 GCAAGACCAATTCCAGGGCATA 60.950 50.000 0.00 0.00 36.27 3.14
809 856 1.153647 CAGGCGTCCGATGTTGCTA 60.154 57.895 0.00 0.00 0.00 3.49
811 858 3.499737 CCAGGCGTCCGATGTTGC 61.500 66.667 0.00 0.00 0.00 4.17
813 860 2.311688 GATCCCAGGCGTCCGATGTT 62.312 60.000 0.00 0.00 0.00 2.71
828 875 3.007542 GGTGGGGTGGAAGGATCC 58.992 66.667 2.48 2.48 46.76 3.36
859 906 0.678048 GTGTGATTGGTGGAGGAGGC 60.678 60.000 0.00 0.00 0.00 4.70
862 909 1.497309 GGGGTGTGATTGGTGGAGGA 61.497 60.000 0.00 0.00 0.00 3.71
883 930 7.210174 GGAATTGAATTTATAGAGGGGTTTGC 58.790 38.462 0.00 0.00 0.00 3.68
885 932 7.426667 TGGGAATTGAATTTATAGAGGGGTTT 58.573 34.615 0.00 0.00 0.00 3.27
886 933 6.992235 TGGGAATTGAATTTATAGAGGGGTT 58.008 36.000 0.00 0.00 0.00 4.11
887 934 6.606241 TGGGAATTGAATTTATAGAGGGGT 57.394 37.500 0.00 0.00 0.00 4.95
901 948 2.175499 GGTGGGATGAGATGGGAATTGA 59.825 50.000 0.00 0.00 0.00 2.57
939 988 0.887933 GAGGAGGATGATCGGAGAGC 59.112 60.000 0.00 0.00 46.88 4.09
974 1024 2.060980 GGATCGAGAGGTGGCTGGT 61.061 63.158 0.00 0.00 0.00 4.00
1156 1212 1.302832 CCACGCTCTTCTTGGCCTT 60.303 57.895 3.32 0.00 0.00 4.35
1157 1213 2.177594 CTCCACGCTCTTCTTGGCCT 62.178 60.000 3.32 0.00 34.33 5.19
1158 1214 1.743252 CTCCACGCTCTTCTTGGCC 60.743 63.158 0.00 0.00 34.33 5.36
1206 1262 4.641645 TCGGGGTGCACCTGCTTG 62.642 66.667 33.91 18.94 45.92 4.01
1221 1277 1.006805 GGAGGAGATGCCGATGTCG 60.007 63.158 0.00 0.00 43.43 4.35
1464 1520 1.512996 AACACGACGAGCCGAGAGAA 61.513 55.000 0.00 0.00 0.00 2.87
1472 1531 1.007011 CGATCATCAAACACGACGAGC 60.007 52.381 0.00 0.00 0.00 5.03
1480 1539 1.678728 GCCCAGGACGATCATCAAACA 60.679 52.381 0.00 0.00 0.00 2.83
1499 1558 2.107953 GAGCCTCGATCACTGGGC 59.892 66.667 3.02 3.02 44.38 5.36
1505 1564 1.816835 ACAAACTACGAGCCTCGATCA 59.183 47.619 22.80 4.42 43.74 2.92
1664 1730 5.221382 ACACCACTAGCTAATTATACACCGG 60.221 44.000 0.00 0.00 0.00 5.28
1665 1731 5.839621 ACACCACTAGCTAATTATACACCG 58.160 41.667 0.00 0.00 0.00 4.94
1679 1745 2.814280 ACGGAAGACAACACCACTAG 57.186 50.000 0.00 0.00 0.00 2.57
1681 1747 1.343465 CCTACGGAAGACAACACCACT 59.657 52.381 0.00 0.00 0.00 4.00
1686 1752 3.056107 CCTCAATCCTACGGAAGACAACA 60.056 47.826 0.00 0.00 34.34 3.33
1915 1981 4.380531 TCTTGCTGTCGTTTCAGATTCTT 58.619 39.130 8.59 0.00 37.61 2.52
1965 2033 6.603940 TTTAACATTCTTGGGAAGGATTGG 57.396 37.500 0.00 0.00 36.81 3.16
2051 2123 3.681835 AACGTCGAGCTCGGCCTT 61.682 61.111 32.97 24.94 41.58 4.35
2087 2159 1.352622 ACAACCTGCAGGACCAAGGA 61.353 55.000 39.19 0.00 38.94 3.36
2111 2183 2.985456 CTCGGCCAGAAGCTCCTT 59.015 61.111 2.24 0.00 43.05 3.36
2112 2184 3.780173 GCTCGGCCAGAAGCTCCT 61.780 66.667 13.14 0.00 43.05 3.69
2243 2315 2.202797 CTGACCGGCGACATCCTG 60.203 66.667 9.30 0.00 0.00 3.86
2324 2396 0.609131 CAATCTCCGGCTGGTTTGGT 60.609 55.000 12.43 0.00 36.30 3.67
2325 2397 0.322456 TCAATCTCCGGCTGGTTTGG 60.322 55.000 12.43 0.96 36.30 3.28
2331 2403 2.874701 CCAGTTTATCAATCTCCGGCTG 59.125 50.000 0.00 0.00 0.00 4.85
2333 2405 3.194005 TCCAGTTTATCAATCTCCGGC 57.806 47.619 0.00 0.00 0.00 6.13
2334 2406 4.941263 TGTTTCCAGTTTATCAATCTCCGG 59.059 41.667 0.00 0.00 0.00 5.14
2335 2407 6.149474 AGTTGTTTCCAGTTTATCAATCTCCG 59.851 38.462 0.00 0.00 0.00 4.63
2336 2408 7.308435 CAGTTGTTTCCAGTTTATCAATCTCC 58.692 38.462 0.00 0.00 0.00 3.71
2339 2411 7.214467 TCCAGTTGTTTCCAGTTTATCAATC 57.786 36.000 0.00 0.00 0.00 2.67
2340 2412 7.595819 TTCCAGTTGTTTCCAGTTTATCAAT 57.404 32.000 0.00 0.00 0.00 2.57
2341 2413 7.521423 CGATTCCAGTTGTTTCCAGTTTATCAA 60.521 37.037 0.00 0.00 0.00 2.57
2342 2414 6.072728 CGATTCCAGTTGTTTCCAGTTTATCA 60.073 38.462 0.00 0.00 0.00 2.15
2343 2415 6.314784 CGATTCCAGTTGTTTCCAGTTTATC 58.685 40.000 0.00 0.00 0.00 1.75
2344 2416 5.335661 GCGATTCCAGTTGTTTCCAGTTTAT 60.336 40.000 0.00 0.00 0.00 1.40
2345 2417 4.023536 GCGATTCCAGTTGTTTCCAGTTTA 60.024 41.667 0.00 0.00 0.00 2.01
2346 2418 3.243401 GCGATTCCAGTTGTTTCCAGTTT 60.243 43.478 0.00 0.00 0.00 2.66
2347 2419 2.293399 GCGATTCCAGTTGTTTCCAGTT 59.707 45.455 0.00 0.00 0.00 3.16
2349 2421 1.879380 TGCGATTCCAGTTGTTTCCAG 59.121 47.619 0.00 0.00 0.00 3.86
2351 2423 1.606668 TGTGCGATTCCAGTTGTTTCC 59.393 47.619 0.00 0.00 0.00 3.13
2352 2424 3.347958 TTGTGCGATTCCAGTTGTTTC 57.652 42.857 0.00 0.00 0.00 2.78
2353 2425 3.317711 TGATTGTGCGATTCCAGTTGTTT 59.682 39.130 0.00 0.00 0.00 2.83
2354 2426 2.884012 TGATTGTGCGATTCCAGTTGTT 59.116 40.909 0.00 0.00 0.00 2.83
2355 2427 2.503331 TGATTGTGCGATTCCAGTTGT 58.497 42.857 0.00 0.00 0.00 3.32
2356 2428 3.557577 TTGATTGTGCGATTCCAGTTG 57.442 42.857 0.00 0.00 0.00 3.16
2357 2429 3.609175 CGTTTGATTGTGCGATTCCAGTT 60.609 43.478 0.00 0.00 0.00 3.16
2358 2430 2.095768 CGTTTGATTGTGCGATTCCAGT 60.096 45.455 0.00 0.00 0.00 4.00
2359 2431 2.159430 TCGTTTGATTGTGCGATTCCAG 59.841 45.455 0.00 0.00 0.00 3.86
2360 2432 2.147150 TCGTTTGATTGTGCGATTCCA 58.853 42.857 0.00 0.00 0.00 3.53
2361 2433 2.159627 ACTCGTTTGATTGTGCGATTCC 59.840 45.455 0.00 0.00 32.79 3.01
2410 2496 9.087424 GTTGCAAAGGTAATGGAATTCTTATTC 57.913 33.333 0.00 0.00 37.87 1.75
2413 2499 7.531857 TGTTGCAAAGGTAATGGAATTCTTA 57.468 32.000 0.00 0.00 37.87 2.10
2421 2507 1.539388 TCGCTGTTGCAAAGGTAATGG 59.461 47.619 0.00 0.00 39.64 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.