Multiple sequence alignment - TraesCS1B01G294400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G294400 chr1B 100.000 5060 0 0 1 5060 512418343 512423402 0.000000e+00 9345.0
1 TraesCS1B01G294400 chr1B 95.341 279 11 2 242 519 512390299 512390576 4.650000e-120 442.0
2 TraesCS1B01G294400 chr1B 94.982 279 12 2 242 519 512347693 512347970 2.160000e-118 436.0
3 TraesCS1B01G294400 chr1B 100.000 28 0 0 4406 4433 512422710 512422737 9.000000e-03 52.8
4 TraesCS1B01G294400 chr1B 100.000 28 0 0 4368 4395 512422748 512422775 9.000000e-03 52.8
5 TraesCS1B01G294400 chr1D 90.767 1538 83 27 782 2279 382632389 382633907 0.000000e+00 1999.0
6 TraesCS1B01G294400 chr1D 92.498 1173 58 12 2321 3489 382634015 382635161 0.000000e+00 1652.0
7 TraesCS1B01G294400 chr1D 92.880 618 23 11 3546 4153 382635310 382635916 0.000000e+00 878.0
8 TraesCS1B01G294400 chr1D 91.636 538 30 6 1 526 68684946 68685480 0.000000e+00 730.0
9 TraesCS1B01G294400 chr1D 83.697 595 73 20 4480 5060 31282750 31283334 1.600000e-149 540.0
10 TraesCS1B01G294400 chr1D 82.013 606 80 20 4480 5060 319689309 319688708 5.890000e-134 488.0
11 TraesCS1B01G294400 chr1D 87.500 96 9 3 519 614 382632287 382632379 1.930000e-19 108.0
12 TraesCS1B01G294400 chr1A 90.864 1412 94 18 1619 3011 482759461 482760856 0.000000e+00 1860.0
13 TraesCS1B01G294400 chr1A 89.727 1061 53 21 553 1578 482758416 482759455 0.000000e+00 1304.0
14 TraesCS1B01G294400 chr1A 93.229 576 25 10 3546 4118 482761433 482761997 0.000000e+00 835.0
15 TraesCS1B01G294400 chr1A 91.443 409 26 6 3082 3489 482760884 482761284 2.060000e-153 553.0
16 TraesCS1B01G294400 chr1A 77.009 535 97 17 5 525 336470799 336470277 2.980000e-72 283.0
17 TraesCS1B01G294400 chr6D 92.924 537 28 2 1 527 253876791 253877327 0.000000e+00 773.0
18 TraesCS1B01G294400 chr6D 92.857 532 25 5 1 522 193223672 193224200 0.000000e+00 760.0
19 TraesCS1B01G294400 chr6D 85.336 491 63 8 4557 5039 84623730 84624219 2.720000e-137 499.0
20 TraesCS1B01G294400 chr6D 94.139 273 14 2 251 522 253871824 253872095 1.010000e-111 414.0
21 TraesCS1B01G294400 chr6D 93.773 273 13 4 251 522 193218706 193218975 1.700000e-109 407.0
22 TraesCS1B01G294400 chr6D 85.580 319 27 12 4756 5059 469443627 469443941 2.940000e-82 316.0
23 TraesCS1B01G294400 chr2D 92.710 535 25 5 1 525 500371510 500370980 0.000000e+00 760.0
24 TraesCS1B01G294400 chr2D 92.523 535 27 4 1 525 500368963 500368432 0.000000e+00 754.0
25 TraesCS1B01G294400 chr2D 93.863 277 15 2 251 525 638330133 638329857 2.820000e-112 416.0
26 TraesCS1B01G294400 chr2D 76.119 536 102 17 5 525 452558877 452558353 1.810000e-64 257.0
27 TraesCS1B01G294400 chr2B 91.636 538 28 7 1 525 146980225 146979692 0.000000e+00 728.0
28 TraesCS1B01G294400 chr2B 85.642 592 70 10 4479 5060 709814759 709814173 4.330000e-170 608.0
29 TraesCS1B01G294400 chr2B 85.025 601 68 11 4480 5060 108252241 108251643 4.360000e-165 592.0
30 TraesCS1B01G294400 chr2A 88.806 536 43 8 1 525 710180911 710180382 4.270000e-180 641.0
31 TraesCS1B01G294400 chr3B 84.868 608 67 14 4475 5060 490603097 490602493 1.570000e-164 590.0
32 TraesCS1B01G294400 chr3B 77.122 271 55 4 1140 1403 614921304 614921034 3.160000e-32 150.0
33 TraesCS1B01G294400 chr3B 75.570 307 56 13 2410 2716 614919485 614919198 3.180000e-27 134.0
34 TraesCS1B01G294400 chr4B 84.272 604 69 13 4480 5060 94105078 94105678 2.640000e-157 566.0
35 TraesCS1B01G294400 chr3D 83.828 606 76 8 4474 5060 188352456 188353058 1.590000e-154 556.0
36 TraesCS1B01G294400 chr3D 83.505 582 75 12 4478 5055 492671879 492672443 1.610000e-144 523.0
37 TraesCS1B01G294400 chr3D 77.091 275 49 12 1140 1403 462817784 462817513 4.080000e-31 147.0
38 TraesCS1B01G294400 chr3D 76.375 309 49 16 2410 2716 462816042 462815756 1.470000e-30 145.0
39 TraesCS1B01G294400 chr7D 82.363 601 84 11 4479 5060 2366777 2367374 2.100000e-138 503.0
40 TraesCS1B01G294400 chr7D 81.788 604 73 20 4478 5060 419770535 419771122 5.930000e-129 472.0
41 TraesCS1B01G294400 chr6A 80.033 606 95 20 4470 5060 531760578 531759984 4.680000e-115 425.0
42 TraesCS1B01G294400 chr5D 93.407 273 14 4 251 522 3577747 3578016 7.890000e-108 401.0
43 TraesCS1B01G294400 chr3A 78.261 276 44 11 1140 1403 605855808 605855537 4.050000e-36 163.0
44 TraesCS1B01G294400 chr3A 75.806 310 49 20 2410 2716 605854226 605853940 3.180000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G294400 chr1B 512418343 512423402 5059 False 3150.20 9345 100.00000 1 5060 3 chr1B.!!$F3 5059
1 TraesCS1B01G294400 chr1D 382632287 382635916 3629 False 1159.25 1999 90.91125 519 4153 4 chr1D.!!$F3 3634
2 TraesCS1B01G294400 chr1D 68684946 68685480 534 False 730.00 730 91.63600 1 526 1 chr1D.!!$F2 525
3 TraesCS1B01G294400 chr1D 31282750 31283334 584 False 540.00 540 83.69700 4480 5060 1 chr1D.!!$F1 580
4 TraesCS1B01G294400 chr1D 319688708 319689309 601 True 488.00 488 82.01300 4480 5060 1 chr1D.!!$R1 580
5 TraesCS1B01G294400 chr1A 482758416 482761997 3581 False 1138.00 1860 91.31575 553 4118 4 chr1A.!!$F1 3565
6 TraesCS1B01G294400 chr1A 336470277 336470799 522 True 283.00 283 77.00900 5 525 1 chr1A.!!$R1 520
7 TraesCS1B01G294400 chr6D 253876791 253877327 536 False 773.00 773 92.92400 1 527 1 chr6D.!!$F5 526
8 TraesCS1B01G294400 chr6D 193223672 193224200 528 False 760.00 760 92.85700 1 522 1 chr6D.!!$F3 521
9 TraesCS1B01G294400 chr2D 500368432 500371510 3078 True 757.00 760 92.61650 1 525 2 chr2D.!!$R3 524
10 TraesCS1B01G294400 chr2D 452558353 452558877 524 True 257.00 257 76.11900 5 525 1 chr2D.!!$R1 520
11 TraesCS1B01G294400 chr2B 146979692 146980225 533 True 728.00 728 91.63600 1 525 1 chr2B.!!$R2 524
12 TraesCS1B01G294400 chr2B 709814173 709814759 586 True 608.00 608 85.64200 4479 5060 1 chr2B.!!$R3 581
13 TraesCS1B01G294400 chr2B 108251643 108252241 598 True 592.00 592 85.02500 4480 5060 1 chr2B.!!$R1 580
14 TraesCS1B01G294400 chr2A 710180382 710180911 529 True 641.00 641 88.80600 1 525 1 chr2A.!!$R1 524
15 TraesCS1B01G294400 chr3B 490602493 490603097 604 True 590.00 590 84.86800 4475 5060 1 chr3B.!!$R1 585
16 TraesCS1B01G294400 chr4B 94105078 94105678 600 False 566.00 566 84.27200 4480 5060 1 chr4B.!!$F1 580
17 TraesCS1B01G294400 chr3D 188352456 188353058 602 False 556.00 556 83.82800 4474 5060 1 chr3D.!!$F1 586
18 TraesCS1B01G294400 chr3D 492671879 492672443 564 False 523.00 523 83.50500 4478 5055 1 chr3D.!!$F2 577
19 TraesCS1B01G294400 chr7D 2366777 2367374 597 False 503.00 503 82.36300 4479 5060 1 chr7D.!!$F1 581
20 TraesCS1B01G294400 chr7D 419770535 419771122 587 False 472.00 472 81.78800 4478 5060 1 chr7D.!!$F2 582
21 TraesCS1B01G294400 chr6A 531759984 531760578 594 True 425.00 425 80.03300 4470 5060 1 chr6A.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 3104 0.029035 CTAGGGTTCATCGGTCGTCG 59.971 60.000 0.00 0.0 40.90 5.12 F
1198 3808 0.749649 CAGAAGCAGCTCCGAGGTAT 59.250 55.000 0.00 0.0 0.00 2.73 F
1493 4119 0.101399 CGATAGGCGTGTTGAGCTCT 59.899 55.000 16.19 0.0 34.64 4.09 F
1665 4293 1.004161 TGCATAGTGCTTGCCTAACCA 59.996 47.619 3.41 0.0 45.31 3.67 F
2988 5707 0.540365 CCAGCTCTTTGCCCCTTTCA 60.540 55.000 0.00 0.0 44.23 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 4097 0.101399 AGAGCTCAACACGCCTATCG 59.899 55.000 17.77 0.0 45.38 2.92 R
2873 5590 1.000717 GCAGCCTTGAACCGCTTTTTA 60.001 47.619 0.00 0.0 31.40 1.52 R
2900 5619 2.552373 GGAAACAGGTCCCACCACTAAG 60.552 54.545 0.00 0.0 41.95 2.18 R
3541 6336 2.618709 GTTGGCCAATACTACCAGATGC 59.381 50.000 23.66 0.0 34.28 3.91 R
4429 7249 0.040058 TTGTAGCCCTCGAGTACCCA 59.960 55.000 12.31 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 2703 2.027745 GTGGTCATCTCTTTCTCCAGCA 60.028 50.000 0.00 0.00 0.00 4.41
156 2706 3.465871 GTCATCTCTTTCTCCAGCATCC 58.534 50.000 0.00 0.00 0.00 3.51
162 2712 0.250684 TTTCTCCAGCATCCGCAACA 60.251 50.000 0.00 0.00 42.27 3.33
181 2731 1.548719 CATGGGAGGACTACAACGTGA 59.451 52.381 0.00 0.00 0.00 4.35
210 2760 1.674441 CGCTATCCTACGACACCTTGA 59.326 52.381 0.00 0.00 0.00 3.02
342 2903 0.986019 AGCCCGTGGATGTAATGGGA 60.986 55.000 4.85 0.00 45.53 4.37
415 2981 8.147058 ACTGGTTATGCAATGAGAGAATACTAG 58.853 37.037 0.00 0.00 0.00 2.57
472 3053 1.762858 GCTCTCCTCACCTACCCCC 60.763 68.421 0.00 0.00 0.00 5.40
522 3104 0.029035 CTAGGGTTCATCGGTCGTCG 59.971 60.000 0.00 0.00 40.90 5.12
563 3145 3.951663 TCATGGACGAGACAACTAGAGA 58.048 45.455 0.00 0.00 0.00 3.10
565 3147 5.681639 TCATGGACGAGACAACTAGAGATA 58.318 41.667 0.00 0.00 0.00 1.98
670 3255 2.263945 TGTAACGCACGGACATATGTG 58.736 47.619 14.43 2.00 39.10 3.21
692 3277 8.800370 TGTGCTAGTTTACCATAAAATCATCA 57.200 30.769 0.00 0.00 0.00 3.07
837 3425 3.621268 CGGCCGAAGAAGATTGTCATTAA 59.379 43.478 24.07 0.00 0.00 1.40
845 3433 8.221100 CGAAGAAGATTGTCATTAAAACTCGAA 58.779 33.333 0.00 0.00 0.00 3.71
846 3434 9.535270 GAAGAAGATTGTCATTAAAACTCGAAG 57.465 33.333 0.00 0.00 0.00 3.79
983 3579 4.027295 CGAAGCTTTCGCGATATATCATCC 60.027 45.833 10.88 0.07 46.97 3.51
984 3580 3.439293 AGCTTTCGCGATATATCATCCG 58.561 45.455 10.88 11.21 42.32 4.18
985 3581 2.535984 GCTTTCGCGATATATCATCCGG 59.464 50.000 10.88 0.00 0.00 5.14
1133 3743 1.956043 GATCCGATCGAGCTCTGCT 59.044 57.895 18.66 0.00 43.88 4.24
1198 3808 0.749649 CAGAAGCAGCTCCGAGGTAT 59.250 55.000 0.00 0.00 0.00 2.73
1271 3890 4.222847 GATCCCTGTCCCGGCGTC 62.223 72.222 6.01 0.00 0.00 5.19
1410 4029 2.188817 AGTGAGCCCCGATCTTTTACT 58.811 47.619 0.00 0.00 0.00 2.24
1422 4043 7.042335 CCCGATCTTTTACTCTGTAATTCTGT 58.958 38.462 0.00 0.00 0.00 3.41
1443 4066 0.906282 TGCTGCAGAGATGACTCCCA 60.906 55.000 20.43 0.00 43.53 4.37
1450 4073 4.202295 TGCAGAGATGACTCCCATGTTATC 60.202 45.833 0.00 0.00 43.53 1.75
1474 4097 1.125021 CGTCTTGATTCGTGAGTGTGC 59.875 52.381 0.00 0.00 0.00 4.57
1476 4099 1.000717 TCTTGATTCGTGAGTGTGCGA 60.001 47.619 0.00 0.00 35.17 5.10
1480 4103 2.120232 GATTCGTGAGTGTGCGATAGG 58.880 52.381 0.00 0.00 36.97 2.57
1493 4119 0.101399 CGATAGGCGTGTTGAGCTCT 59.899 55.000 16.19 0.00 34.64 4.09
1604 4230 3.417069 TGTTTAGGTACTGCAGCATGT 57.583 42.857 15.27 0.00 41.52 3.21
1606 4232 3.007940 TGTTTAGGTACTGCAGCATGTCT 59.992 43.478 15.27 7.22 41.52 3.41
1607 4233 3.981071 TTAGGTACTGCAGCATGTCTT 57.019 42.857 15.27 0.00 41.52 3.01
1610 4236 4.065321 AGGTACTGCAGCATGTCTTATC 57.935 45.455 15.27 0.00 37.18 1.75
1611 4237 3.708631 AGGTACTGCAGCATGTCTTATCT 59.291 43.478 15.27 0.00 37.18 1.98
1616 4242 7.872993 GGTACTGCAGCATGTCTTATCTTATTA 59.127 37.037 15.27 0.00 39.31 0.98
1617 4243 9.429359 GTACTGCAGCATGTCTTATCTTATTAT 57.571 33.333 15.27 0.00 39.31 1.28
1654 4282 1.945394 CACTCTGGGATTGCATAGTGC 59.055 52.381 0.00 0.00 45.29 4.40
1660 4288 1.396653 GGATTGCATAGTGCTTGCCT 58.603 50.000 3.41 0.00 45.31 4.75
1661 4289 2.575532 GGATTGCATAGTGCTTGCCTA 58.424 47.619 3.41 0.00 45.31 3.93
1662 4290 2.951642 GGATTGCATAGTGCTTGCCTAA 59.048 45.455 3.41 0.00 45.31 2.69
1665 4293 1.004161 TGCATAGTGCTTGCCTAACCA 59.996 47.619 3.41 0.00 45.31 3.67
1679 4307 4.199310 GCCTAACCAGCATTATGTCTTCA 58.801 43.478 0.00 0.00 0.00 3.02
1682 4310 4.644103 AACCAGCATTATGTCTTCATGC 57.356 40.909 0.00 0.00 35.70 4.06
1697 4325 6.598850 TGTCTTCATGCTGCTACAATTGAATA 59.401 34.615 13.59 0.00 0.00 1.75
1719 4350 5.987019 AAACAGGGTTCCCATAAGCTATA 57.013 39.130 10.73 0.00 0.00 1.31
1720 4351 4.976540 ACAGGGTTCCCATAAGCTATAC 57.023 45.455 10.73 0.00 0.00 1.47
1904 4535 8.907222 ATTTGCTTCAAACAGATTAATTTGGT 57.093 26.923 10.46 0.66 36.13 3.67
1961 4594 9.922305 GTAATTGTTATGACTTTGCTAGATCAC 57.078 33.333 0.00 0.00 0.00 3.06
1973 4606 4.763073 TGCTAGATCACTTGGACATGAAG 58.237 43.478 0.00 0.00 0.00 3.02
1988 4621 7.562135 TGGACATGAAGTATTTAACTAGGACC 58.438 38.462 0.00 0.00 37.50 4.46
1989 4622 7.181305 TGGACATGAAGTATTTAACTAGGACCA 59.819 37.037 0.00 0.00 37.50 4.02
2005 4638 3.774766 AGGACCACAGCAACTGACATATA 59.225 43.478 0.78 0.00 35.18 0.86
2065 4699 8.000780 AGCATTAAATTCTGGAACCATAAGTC 57.999 34.615 0.00 0.00 0.00 3.01
2066 4700 7.836183 AGCATTAAATTCTGGAACCATAAGTCT 59.164 33.333 0.00 0.00 0.00 3.24
2067 4701 8.131731 GCATTAAATTCTGGAACCATAAGTCTC 58.868 37.037 0.00 0.00 0.00 3.36
2068 4702 9.401058 CATTAAATTCTGGAACCATAAGTCTCT 57.599 33.333 0.00 0.00 0.00 3.10
2069 4703 8.792830 TTAAATTCTGGAACCATAAGTCTCTG 57.207 34.615 0.00 0.00 0.00 3.35
2070 4704 6.380079 AATTCTGGAACCATAAGTCTCTGT 57.620 37.500 0.00 0.00 0.00 3.41
2071 4705 4.808414 TCTGGAACCATAAGTCTCTGTG 57.192 45.455 0.00 0.00 0.00 3.66
2072 4706 4.416516 TCTGGAACCATAAGTCTCTGTGA 58.583 43.478 0.00 0.00 0.00 3.58
2163 4805 5.146482 TCTGTACTTACGTGTTTGCAAAC 57.854 39.130 30.95 30.95 39.33 2.93
2175 4817 4.808558 TGTTTGCAAACAGATAAGGATGC 58.191 39.130 35.10 10.29 43.45 3.91
2182 4824 5.807011 GCAAACAGATAAGGATGCGAATTTT 59.193 36.000 0.00 0.00 0.00 1.82
2202 4844 8.986929 AATTTTATCCTCAAATCTAGTCCTGG 57.013 34.615 0.00 0.00 0.00 4.45
2211 4853 4.917906 AATCTAGTCCTGGCTTTTCAGT 57.082 40.909 0.00 0.00 33.14 3.41
2220 4862 3.119173 CCTGGCTTTTCAGTTGTGTCAAA 60.119 43.478 0.00 0.00 33.14 2.69
2241 4883 3.330267 AGATGCTGACTTTTCCTCGAAC 58.670 45.455 0.00 0.00 0.00 3.95
2242 4884 1.878953 TGCTGACTTTTCCTCGAACC 58.121 50.000 0.00 0.00 0.00 3.62
2292 5007 5.886960 AAACATACTTAAGAGCCTTGCTG 57.113 39.130 10.09 0.00 39.88 4.41
2301 5016 1.484240 AGAGCCTTGCTGTAGTGATCC 59.516 52.381 0.00 0.00 39.88 3.36
2302 5017 1.208052 GAGCCTTGCTGTAGTGATCCA 59.792 52.381 0.00 0.00 39.88 3.41
2307 5022 3.430098 CCTTGCTGTAGTGATCCAGAGAC 60.430 52.174 1.34 0.00 0.00 3.36
2308 5023 2.807676 TGCTGTAGTGATCCAGAGACA 58.192 47.619 1.34 0.00 0.00 3.41
2313 5028 1.774110 AGTGATCCAGAGACATCGCT 58.226 50.000 0.00 0.00 35.46 4.93
2319 5034 5.050499 GTGATCCAGAGACATCGCTTTAATG 60.050 44.000 0.00 0.00 0.00 1.90
2320 5035 4.736126 TCCAGAGACATCGCTTTAATGA 57.264 40.909 0.00 0.00 0.00 2.57
2321 5036 5.282055 TCCAGAGACATCGCTTTAATGAT 57.718 39.130 0.00 0.00 0.00 2.45
2322 5037 5.674525 TCCAGAGACATCGCTTTAATGATT 58.325 37.500 0.00 0.00 0.00 2.57
2323 5038 6.816136 TCCAGAGACATCGCTTTAATGATTA 58.184 36.000 0.00 0.00 0.00 1.75
2324 5039 7.272244 TCCAGAGACATCGCTTTAATGATTAA 58.728 34.615 0.00 0.00 0.00 1.40
2325 5040 7.933577 TCCAGAGACATCGCTTTAATGATTAAT 59.066 33.333 0.00 0.00 0.00 1.40
2521 5236 2.341846 TCCAAACGGTGAGCTCTTTT 57.658 45.000 16.19 6.35 0.00 2.27
2552 5267 4.350225 ACCTGATTCTATGTCATCATGCCT 59.650 41.667 0.00 0.00 35.70 4.75
2816 5531 9.880157 GTACAAAACCTGTATAGACCAGAAATA 57.120 33.333 0.00 0.00 42.50 1.40
2873 5590 6.779049 TCCAAGGCTATCATCTGCATTATTTT 59.221 34.615 0.00 0.00 31.83 1.82
2886 5605 7.148641 TCTGCATTATTTTAAAAAGCGGTTCA 58.851 30.769 18.21 7.25 0.00 3.18
2900 5619 1.220529 GGTTCAAGGCTGCTTTTTGC 58.779 50.000 0.00 0.00 43.25 3.68
2948 5667 5.253330 TGTTAGGGTTCTGATCATCCAAAC 58.747 41.667 0.00 8.50 0.00 2.93
2963 5682 9.444600 GATCATCCAAACTGTTTAAACCTAGTA 57.555 33.333 15.59 0.00 0.00 1.82
2987 5706 0.540597 ACCAGCTCTTTGCCCCTTTC 60.541 55.000 0.00 0.00 44.23 2.62
2988 5707 0.540365 CCAGCTCTTTGCCCCTTTCA 60.540 55.000 0.00 0.00 44.23 2.69
3018 5737 8.602328 CAGAATTTTGCTGATAAGTAGTCTCAG 58.398 37.037 5.96 5.96 39.50 3.35
3028 5747 6.887002 TGATAAGTAGTCTCAGCATCGGATAT 59.113 38.462 0.00 0.00 0.00 1.63
3031 5750 6.412362 AGTAGTCTCAGCATCGGATATTTT 57.588 37.500 0.00 0.00 0.00 1.82
3137 5858 7.916977 TCTTGCAAAATAATCCTGAAATCATCG 59.083 33.333 0.00 0.00 0.00 3.84
3148 5869 6.280643 TCCTGAAATCATCGTATTGTACAGG 58.719 40.000 0.00 0.00 37.12 4.00
3160 5881 4.789012 ATTGTACAGGCAAACAGATTGG 57.211 40.909 0.00 0.00 39.54 3.16
3161 5882 2.513753 TGTACAGGCAAACAGATTGGG 58.486 47.619 0.00 0.00 39.54 4.12
3183 5904 7.846066 TGGGTATTTGGTCAAATTATTCTTGG 58.154 34.615 13.24 0.00 40.99 3.61
3189 5910 7.595819 TTGGTCAAATTATTCTTGGAAGTGT 57.404 32.000 0.00 0.00 0.00 3.55
3209 5930 4.573900 TGTTTTGAACACCAACTTGCATT 58.426 34.783 0.00 0.00 36.25 3.56
3227 5948 9.914131 ACTTGCATTTAGTCTTTTCCTAATTTC 57.086 29.630 0.00 0.00 0.00 2.17
3340 6061 1.805945 CGGCTGTAAGTGTCCTCGC 60.806 63.158 0.00 0.00 35.30 5.03
3359 6080 6.382859 TCCTCGCCATTTATTATAGGCTATCA 59.617 38.462 10.96 0.00 44.85 2.15
3379 6100 4.401022 TCATCTTTCTTTGTGTGCTGGAT 58.599 39.130 0.00 0.00 0.00 3.41
3392 6113 2.218953 GCTGGATGCATCAAATGGTG 57.781 50.000 27.25 5.99 42.31 4.17
3422 6143 2.425143 TCCATTCTCATGTGCCTTCC 57.575 50.000 0.00 0.00 0.00 3.46
3423 6144 1.634973 TCCATTCTCATGTGCCTTCCA 59.365 47.619 0.00 0.00 0.00 3.53
3445 6166 5.064198 CCATGCAATGTTGAAAATCACCATC 59.936 40.000 0.00 0.00 44.81 3.51
3482 6203 7.141363 CAGTAGCTTGTTTCAGTTTTGCTAAT 58.859 34.615 0.00 0.00 34.09 1.73
3485 6206 5.754890 AGCTTGTTTCAGTTTTGCTAATTGG 59.245 36.000 0.00 0.00 0.00 3.16
3489 6210 6.815089 TGTTTCAGTTTTGCTAATTGGTGAT 58.185 32.000 0.00 0.00 0.00 3.06
3490 6211 7.271511 TGTTTCAGTTTTGCTAATTGGTGATT 58.728 30.769 0.00 0.00 0.00 2.57
3491 6212 7.768120 TGTTTCAGTTTTGCTAATTGGTGATTT 59.232 29.630 0.00 0.00 0.00 2.17
3493 6214 8.729805 TTCAGTTTTGCTAATTGGTGATTTTT 57.270 26.923 0.00 0.00 0.00 1.94
3543 6338 2.669300 ACAAAGCATGTTGTTGTGCA 57.331 40.000 9.17 0.00 40.06 4.57
3544 6339 3.182341 ACAAAGCATGTTGTTGTGCAT 57.818 38.095 9.17 0.00 40.06 3.96
3556 6370 5.181056 TGTTGTTGTGCATCTGGTAGTATTG 59.819 40.000 0.00 0.00 0.00 1.90
3565 6379 4.150897 TCTGGTAGTATTGGCCAACATC 57.849 45.455 23.27 13.96 0.00 3.06
3567 6381 4.227300 TCTGGTAGTATTGGCCAACATCTT 59.773 41.667 23.27 7.10 0.00 2.40
3570 6384 4.705023 GGTAGTATTGGCCAACATCTTGTT 59.295 41.667 23.27 4.53 42.08 2.83
3576 6390 5.798125 TTGGCCAACATCTTGTTTGATTA 57.202 34.783 16.05 0.00 38.77 1.75
3637 6451 7.380602 GGATCATTATTTAGTTTGTGCATCTGC 59.619 37.037 0.00 0.00 42.50 4.26
3666 6480 5.060506 TCGCTTTGGTTTCTGAAGTTATGA 58.939 37.500 0.00 0.00 0.00 2.15
3891 6705 3.186047 GCGTCGGTCGAATGGTGG 61.186 66.667 0.00 0.00 42.86 4.61
3939 6755 3.555966 GGGTGCTGCCTATTATGAACTT 58.444 45.455 0.00 0.00 37.43 2.66
3940 6756 3.565902 GGGTGCTGCCTATTATGAACTTC 59.434 47.826 0.00 0.00 37.43 3.01
3941 6757 4.455606 GGTGCTGCCTATTATGAACTTCT 58.544 43.478 0.00 0.00 0.00 2.85
4023 6839 0.455464 CGTAGTCATCGCCGTGAACA 60.455 55.000 0.00 0.00 0.00 3.18
4029 6845 3.059884 GTCATCGCCGTGAACATCATAT 58.940 45.455 0.00 0.00 0.00 1.78
4047 6863 8.316214 ACATCATATCAAAGAAATTGGCTGTTT 58.684 29.630 0.00 0.00 39.62 2.83
4056 6872 5.916318 AGAAATTGGCTGTTTGTTGAATGA 58.084 33.333 0.00 0.00 0.00 2.57
4073 6889 4.957954 TGAATGAATCCTTCCCCAAGAATG 59.042 41.667 0.00 0.00 32.82 2.67
4118 6934 6.163476 TGAATGTTAGCTCGTTCAGTGTATT 58.837 36.000 6.07 0.00 38.09 1.89
4125 6945 8.744011 GTTAGCTCGTTCAGTGTATTGTATTAG 58.256 37.037 0.00 0.00 0.00 1.73
4136 6956 8.511321 CAGTGTATTGTATTAGTTGCTTTGGAA 58.489 33.333 0.00 0.00 0.00 3.53
4148 6968 2.076863 GCTTTGGAAGCGTGTAGATGT 58.923 47.619 0.00 0.00 45.74 3.06
4150 6970 3.682858 GCTTTGGAAGCGTGTAGATGTTA 59.317 43.478 0.00 0.00 45.74 2.41
4151 6971 4.201724 GCTTTGGAAGCGTGTAGATGTTAG 60.202 45.833 0.00 0.00 45.74 2.34
4153 6973 3.845178 TGGAAGCGTGTAGATGTTAGTG 58.155 45.455 0.00 0.00 0.00 2.74
4156 6976 3.232213 AGCGTGTAGATGTTAGTGGTG 57.768 47.619 0.00 0.00 0.00 4.17
4157 6977 2.094182 AGCGTGTAGATGTTAGTGGTGG 60.094 50.000 0.00 0.00 0.00 4.61
4158 6978 2.353406 GCGTGTAGATGTTAGTGGTGGT 60.353 50.000 0.00 0.00 0.00 4.16
4159 6979 3.863400 GCGTGTAGATGTTAGTGGTGGTT 60.863 47.826 0.00 0.00 0.00 3.67
4160 6980 3.924686 CGTGTAGATGTTAGTGGTGGTTC 59.075 47.826 0.00 0.00 0.00 3.62
4161 6981 4.321750 CGTGTAGATGTTAGTGGTGGTTCT 60.322 45.833 0.00 0.00 0.00 3.01
4162 6982 4.929808 GTGTAGATGTTAGTGGTGGTTCTG 59.070 45.833 0.00 0.00 0.00 3.02
4163 6983 4.591498 TGTAGATGTTAGTGGTGGTTCTGT 59.409 41.667 0.00 0.00 0.00 3.41
4164 6984 4.273148 AGATGTTAGTGGTGGTTCTGTC 57.727 45.455 0.00 0.00 0.00 3.51
4165 6985 3.904339 AGATGTTAGTGGTGGTTCTGTCT 59.096 43.478 0.00 0.00 0.00 3.41
4166 6986 3.746045 TGTTAGTGGTGGTTCTGTCTC 57.254 47.619 0.00 0.00 0.00 3.36
4167 6987 3.035363 TGTTAGTGGTGGTTCTGTCTCA 58.965 45.455 0.00 0.00 0.00 3.27
4168 6988 3.181469 TGTTAGTGGTGGTTCTGTCTCAC 60.181 47.826 0.00 0.00 0.00 3.51
4169 6989 1.496060 AGTGGTGGTTCTGTCTCACA 58.504 50.000 0.00 0.00 33.45 3.58
4170 6990 1.837439 AGTGGTGGTTCTGTCTCACAA 59.163 47.619 0.00 0.00 33.45 3.33
4171 6991 2.158900 AGTGGTGGTTCTGTCTCACAAG 60.159 50.000 0.00 0.00 33.45 3.16
4172 6992 1.837439 TGGTGGTTCTGTCTCACAAGT 59.163 47.619 0.00 0.00 33.45 3.16
4173 6993 3.035363 TGGTGGTTCTGTCTCACAAGTA 58.965 45.455 0.00 0.00 33.45 2.24
4174 6994 3.452990 TGGTGGTTCTGTCTCACAAGTAA 59.547 43.478 0.00 0.00 33.45 2.24
4175 6995 4.080807 TGGTGGTTCTGTCTCACAAGTAAA 60.081 41.667 0.00 0.00 33.45 2.01
4176 6996 4.511826 GGTGGTTCTGTCTCACAAGTAAAG 59.488 45.833 0.00 0.00 33.45 1.85
4177 6997 5.116882 GTGGTTCTGTCTCACAAGTAAAGT 58.883 41.667 0.00 0.00 0.00 2.66
4178 6998 5.585047 GTGGTTCTGTCTCACAAGTAAAGTT 59.415 40.000 0.00 0.00 0.00 2.66
4179 6999 6.093633 GTGGTTCTGTCTCACAAGTAAAGTTT 59.906 38.462 0.00 0.00 0.00 2.66
4180 7000 6.315393 TGGTTCTGTCTCACAAGTAAAGTTTC 59.685 38.462 0.00 0.00 0.00 2.78
4181 7001 6.411652 GTTCTGTCTCACAAGTAAAGTTTCG 58.588 40.000 0.00 0.00 0.00 3.46
4182 7002 5.657474 TCTGTCTCACAAGTAAAGTTTCGT 58.343 37.500 0.00 0.00 0.00 3.85
4183 7003 5.518847 TCTGTCTCACAAGTAAAGTTTCGTG 59.481 40.000 0.00 0.00 0.00 4.35
4184 7004 5.172934 TGTCTCACAAGTAAAGTTTCGTGT 58.827 37.500 0.00 0.00 0.00 4.49
4185 7005 5.290158 TGTCTCACAAGTAAAGTTTCGTGTC 59.710 40.000 0.00 0.00 0.00 3.67
4186 7006 4.807304 TCTCACAAGTAAAGTTTCGTGTCC 59.193 41.667 0.00 0.00 0.00 4.02
4187 7007 4.761975 TCACAAGTAAAGTTTCGTGTCCT 58.238 39.130 0.00 0.00 0.00 3.85
4188 7008 4.569162 TCACAAGTAAAGTTTCGTGTCCTG 59.431 41.667 0.00 0.00 0.00 3.86
4189 7009 4.331717 CACAAGTAAAGTTTCGTGTCCTGT 59.668 41.667 0.00 0.00 0.00 4.00
4190 7010 4.331717 ACAAGTAAAGTTTCGTGTCCTGTG 59.668 41.667 0.00 0.00 0.00 3.66
4191 7011 3.463944 AGTAAAGTTTCGTGTCCTGTGG 58.536 45.455 0.00 0.00 0.00 4.17
4192 7012 1.021968 AAAGTTTCGTGTCCTGTGGC 58.978 50.000 0.00 0.00 0.00 5.01
4193 7013 1.157870 AAGTTTCGTGTCCTGTGGCG 61.158 55.000 0.00 0.00 0.00 5.69
4194 7014 1.593209 GTTTCGTGTCCTGTGGCGA 60.593 57.895 0.00 0.00 0.00 5.54
4195 7015 0.949105 GTTTCGTGTCCTGTGGCGAT 60.949 55.000 0.00 0.00 33.27 4.58
4196 7016 0.948623 TTTCGTGTCCTGTGGCGATG 60.949 55.000 0.00 0.00 33.27 3.84
4197 7017 3.490759 CGTGTCCTGTGGCGATGC 61.491 66.667 0.00 0.00 0.00 3.91
4223 7043 3.009714 GGGAGGCCCGTCTTCCTT 61.010 66.667 0.00 0.00 32.13 3.36
4224 7044 2.603652 GGGAGGCCCGTCTTCCTTT 61.604 63.158 0.00 0.00 32.13 3.11
4225 7045 1.377333 GGAGGCCCGTCTTCCTTTG 60.377 63.158 0.00 0.00 31.71 2.77
4226 7046 1.677552 GAGGCCCGTCTTCCTTTGA 59.322 57.895 0.00 0.00 31.71 2.69
4227 7047 0.673956 GAGGCCCGTCTTCCTTTGAC 60.674 60.000 0.00 0.00 31.71 3.18
4233 7053 2.244946 GTCTTCCTTTGACGGTGGC 58.755 57.895 0.00 0.00 0.00 5.01
4234 7054 1.301401 TCTTCCTTTGACGGTGGCG 60.301 57.895 0.00 0.00 0.00 5.69
4235 7055 1.301401 CTTCCTTTGACGGTGGCGA 60.301 57.895 0.00 0.00 0.00 5.54
4236 7056 1.566018 CTTCCTTTGACGGTGGCGAC 61.566 60.000 0.00 0.00 0.00 5.19
4237 7057 2.999739 TTCCTTTGACGGTGGCGACC 63.000 60.000 8.02 8.02 39.14 4.79
4264 7084 4.151582 GCGCCTGGCCATGCAATT 62.152 61.111 29.18 0.00 34.80 2.32
4265 7085 2.580276 CGCCTGGCCATGCAATTT 59.420 55.556 29.18 0.00 0.00 1.82
4266 7086 1.078988 CGCCTGGCCATGCAATTTT 60.079 52.632 29.18 0.00 0.00 1.82
4267 7087 1.363145 CGCCTGGCCATGCAATTTTG 61.363 55.000 29.18 10.81 0.00 2.44
4277 7097 2.343018 CAATTTTGCTGGCCGCCA 59.657 55.556 12.67 12.67 38.05 5.69
4278 7098 2.028733 CAATTTTGCTGGCCGCCAC 61.029 57.895 8.43 6.52 38.05 5.01
4279 7099 3.238755 AATTTTGCTGGCCGCCACC 62.239 57.895 8.43 2.17 38.05 4.61
4293 7113 3.400054 CACCCCCGTCCTTCCCTC 61.400 72.222 0.00 0.00 0.00 4.30
4294 7114 4.735599 ACCCCCGTCCTTCCCTCC 62.736 72.222 0.00 0.00 0.00 4.30
4296 7116 4.416601 CCCCGTCCTTCCCTCCCT 62.417 72.222 0.00 0.00 0.00 4.20
4297 7117 2.694305 CCCGTCCTTCCCTCCCTA 59.306 66.667 0.00 0.00 0.00 3.53
4298 7118 1.002533 CCCGTCCTTCCCTCCCTAA 59.997 63.158 0.00 0.00 0.00 2.69
4299 7119 1.335882 CCCGTCCTTCCCTCCCTAAC 61.336 65.000 0.00 0.00 0.00 2.34
4300 7120 0.616679 CCGTCCTTCCCTCCCTAACA 60.617 60.000 0.00 0.00 0.00 2.41
4301 7121 1.497161 CGTCCTTCCCTCCCTAACAT 58.503 55.000 0.00 0.00 0.00 2.71
4302 7122 1.413077 CGTCCTTCCCTCCCTAACATC 59.587 57.143 0.00 0.00 0.00 3.06
4303 7123 2.478292 GTCCTTCCCTCCCTAACATCA 58.522 52.381 0.00 0.00 0.00 3.07
4304 7124 3.049344 GTCCTTCCCTCCCTAACATCAT 58.951 50.000 0.00 0.00 0.00 2.45
4305 7125 3.071747 GTCCTTCCCTCCCTAACATCATC 59.928 52.174 0.00 0.00 0.00 2.92
4306 7126 2.373502 CCTTCCCTCCCTAACATCATCC 59.626 54.545 0.00 0.00 0.00 3.51
4307 7127 2.118403 TCCCTCCCTAACATCATCCC 57.882 55.000 0.00 0.00 0.00 3.85
4308 7128 1.296832 TCCCTCCCTAACATCATCCCA 59.703 52.381 0.00 0.00 0.00 4.37
4309 7129 1.701847 CCCTCCCTAACATCATCCCAG 59.298 57.143 0.00 0.00 0.00 4.45
4310 7130 1.072965 CCTCCCTAACATCATCCCAGC 59.927 57.143 0.00 0.00 0.00 4.85
4311 7131 2.053244 CTCCCTAACATCATCCCAGCT 58.947 52.381 0.00 0.00 0.00 4.24
4312 7132 1.770658 TCCCTAACATCATCCCAGCTG 59.229 52.381 6.78 6.78 0.00 4.24
4313 7133 1.770658 CCCTAACATCATCCCAGCTGA 59.229 52.381 17.39 0.00 0.00 4.26
4314 7134 2.374504 CCCTAACATCATCCCAGCTGAT 59.625 50.000 17.39 0.00 33.65 2.90
4315 7135 3.181436 CCCTAACATCATCCCAGCTGATT 60.181 47.826 17.39 0.00 31.00 2.57
4316 7136 4.467769 CCTAACATCATCCCAGCTGATTT 58.532 43.478 17.39 0.00 31.00 2.17
4317 7137 4.518211 CCTAACATCATCCCAGCTGATTTC 59.482 45.833 17.39 0.00 31.00 2.17
4318 7138 2.941480 ACATCATCCCAGCTGATTTCC 58.059 47.619 17.39 0.00 31.00 3.13
4319 7139 2.512896 ACATCATCCCAGCTGATTTCCT 59.487 45.455 17.39 0.00 31.00 3.36
4320 7140 3.718434 ACATCATCCCAGCTGATTTCCTA 59.282 43.478 17.39 0.00 31.00 2.94
4321 7141 4.202440 ACATCATCCCAGCTGATTTCCTAG 60.202 45.833 17.39 1.09 31.00 3.02
4322 7142 3.657610 TCATCCCAGCTGATTTCCTAGA 58.342 45.455 17.39 0.00 0.00 2.43
4323 7143 4.237843 TCATCCCAGCTGATTTCCTAGAT 58.762 43.478 17.39 1.35 0.00 1.98
4324 7144 4.041321 TCATCCCAGCTGATTTCCTAGATG 59.959 45.833 17.39 12.89 0.00 2.90
4326 7146 2.441001 CCCAGCTGATTTCCTAGATGGT 59.559 50.000 17.39 0.00 46.35 3.55
4327 7147 3.495806 CCCAGCTGATTTCCTAGATGGTC 60.496 52.174 17.39 0.00 46.35 4.02
4328 7148 3.135348 CCAGCTGATTTCCTAGATGGTCA 59.865 47.826 17.39 0.00 43.61 4.02
4329 7149 4.202440 CCAGCTGATTTCCTAGATGGTCAT 60.202 45.833 17.39 0.00 43.61 3.06
4330 7150 4.996122 CAGCTGATTTCCTAGATGGTCATC 59.004 45.833 8.42 2.92 38.09 2.92
4331 7151 4.041444 AGCTGATTTCCTAGATGGTCATCC 59.959 45.833 7.28 0.00 38.58 3.51
4341 7161 4.655527 GGTCATCCACCGCTATCG 57.344 61.111 0.00 0.00 34.56 2.92
4342 7162 1.740285 GGTCATCCACCGCTATCGT 59.260 57.895 0.00 0.00 34.56 3.73
4343 7163 0.597637 GGTCATCCACCGCTATCGTG 60.598 60.000 0.00 0.00 34.56 4.35
4344 7164 0.102481 GTCATCCACCGCTATCGTGT 59.898 55.000 0.00 0.00 0.00 4.49
4345 7165 0.102300 TCATCCACCGCTATCGTGTG 59.898 55.000 2.00 2.00 36.96 3.82
4347 7167 2.644555 ATCCACCGCTATCGTGTGGC 62.645 60.000 16.81 0.00 46.78 5.01
4348 7168 2.184322 CACCGCTATCGTGTGGCT 59.816 61.111 5.60 0.00 41.02 4.75
4349 7169 1.435925 CACCGCTATCGTGTGGCTA 59.564 57.895 5.60 0.00 41.02 3.93
4350 7170 0.179121 CACCGCTATCGTGTGGCTAA 60.179 55.000 5.60 0.00 41.02 3.09
4351 7171 0.179119 ACCGCTATCGTGTGGCTAAC 60.179 55.000 5.60 0.00 41.02 2.34
4352 7172 0.102481 CCGCTATCGTGTGGCTAACT 59.898 55.000 0.00 0.00 31.07 2.24
4353 7173 1.478137 CGCTATCGTGTGGCTAACTC 58.522 55.000 0.00 0.00 31.07 3.01
4354 7174 1.854227 GCTATCGTGTGGCTAACTCC 58.146 55.000 0.00 0.00 0.00 3.85
4355 7175 1.409427 GCTATCGTGTGGCTAACTCCT 59.591 52.381 0.00 0.00 0.00 3.69
4356 7176 2.799917 GCTATCGTGTGGCTAACTCCTG 60.800 54.545 0.00 0.00 0.00 3.86
4357 7177 0.537188 ATCGTGTGGCTAACTCCTGG 59.463 55.000 0.00 0.00 0.00 4.45
4358 7178 0.541063 TCGTGTGGCTAACTCCTGGA 60.541 55.000 0.00 0.00 0.00 3.86
4359 7179 0.537188 CGTGTGGCTAACTCCTGGAT 59.463 55.000 0.00 0.00 0.00 3.41
4360 7180 1.066143 CGTGTGGCTAACTCCTGGATT 60.066 52.381 0.00 0.00 0.00 3.01
4361 7181 2.633488 GTGTGGCTAACTCCTGGATTC 58.367 52.381 0.00 0.00 0.00 2.52
4362 7182 1.559682 TGTGGCTAACTCCTGGATTCC 59.440 52.381 0.00 0.00 0.00 3.01
4363 7183 1.840635 GTGGCTAACTCCTGGATTCCT 59.159 52.381 3.95 0.00 0.00 3.36
4364 7184 2.119495 TGGCTAACTCCTGGATTCCTC 58.881 52.381 3.95 0.00 0.00 3.71
4365 7185 1.418264 GGCTAACTCCTGGATTCCTCC 59.582 57.143 3.95 0.00 42.45 4.30
4366 7186 1.069358 GCTAACTCCTGGATTCCTCCG 59.931 57.143 3.95 0.00 45.37 4.63
4367 7187 2.667470 CTAACTCCTGGATTCCTCCGA 58.333 52.381 3.95 0.00 45.37 4.55
4368 7188 1.196012 AACTCCTGGATTCCTCCGAC 58.804 55.000 3.95 0.00 45.37 4.79
4369 7189 1.038130 ACTCCTGGATTCCTCCGACG 61.038 60.000 3.95 0.00 45.37 5.12
4370 7190 2.107141 CCTGGATTCCTCCGACGC 59.893 66.667 3.95 0.00 45.37 5.19
4371 7191 2.427245 CCTGGATTCCTCCGACGCT 61.427 63.158 3.95 0.00 45.37 5.07
4372 7192 1.517832 CTGGATTCCTCCGACGCTT 59.482 57.895 3.95 0.00 45.37 4.68
4373 7193 0.807667 CTGGATTCCTCCGACGCTTG 60.808 60.000 3.95 0.00 45.37 4.01
4374 7194 2.174319 GGATTCCTCCGACGCTTGC 61.174 63.158 0.00 0.00 0.00 4.01
4375 7195 1.153549 GATTCCTCCGACGCTTGCT 60.154 57.895 0.00 0.00 0.00 3.91
4376 7196 1.424493 GATTCCTCCGACGCTTGCTG 61.424 60.000 0.00 0.00 0.00 4.41
4377 7197 1.888436 ATTCCTCCGACGCTTGCTGA 61.888 55.000 0.00 0.00 0.00 4.26
4378 7198 1.888436 TTCCTCCGACGCTTGCTGAT 61.888 55.000 0.00 0.00 0.00 2.90
4379 7199 1.448540 CCTCCGACGCTTGCTGATT 60.449 57.895 0.00 0.00 0.00 2.57
4380 7200 1.424493 CCTCCGACGCTTGCTGATTC 61.424 60.000 0.00 0.00 0.00 2.52
4381 7201 1.424493 CTCCGACGCTTGCTGATTCC 61.424 60.000 0.00 0.00 0.00 3.01
4382 7202 2.464459 CCGACGCTTGCTGATTCCC 61.464 63.158 0.00 0.00 0.00 3.97
4383 7203 1.448540 CGACGCTTGCTGATTCCCT 60.449 57.895 0.00 0.00 0.00 4.20
4384 7204 1.699656 CGACGCTTGCTGATTCCCTG 61.700 60.000 0.00 0.00 0.00 4.45
4385 7205 1.986575 GACGCTTGCTGATTCCCTGC 61.987 60.000 0.00 0.00 39.79 4.85
4386 7206 2.796651 GCTTGCTGATTCCCTGCG 59.203 61.111 0.00 0.00 41.93 5.18
4387 7207 2.796651 CTTGCTGATTCCCTGCGC 59.203 61.111 0.00 0.00 41.93 6.09
4388 7208 3.104602 CTTGCTGATTCCCTGCGCG 62.105 63.158 0.00 0.00 41.93 6.86
4420 7240 2.486966 GCACGCTTGCTGATTCCC 59.513 61.111 8.12 0.00 46.17 3.97
4421 7241 2.042831 GCACGCTTGCTGATTCCCT 61.043 57.895 8.12 0.00 46.17 4.20
4422 7242 1.798735 CACGCTTGCTGATTCCCTG 59.201 57.895 0.00 0.00 0.00 4.45
4423 7243 2.042831 ACGCTTGCTGATTCCCTGC 61.043 57.895 0.00 0.00 39.79 4.85
4424 7244 2.796651 GCTTGCTGATTCCCTGCG 59.203 61.111 0.00 0.00 41.93 5.18
4425 7245 2.796651 CTTGCTGATTCCCTGCGC 59.203 61.111 0.00 0.00 41.93 6.09
4426 7246 3.104602 CTTGCTGATTCCCTGCGCG 62.105 63.158 0.00 0.00 41.93 6.86
4437 7257 4.814294 CTGCGCGGGTGGGTACTC 62.814 72.222 8.83 0.00 0.00 2.59
4443 7263 3.468140 GGGTGGGTACTCGAGGGC 61.468 72.222 18.41 8.65 0.00 5.19
4444 7264 2.363925 GGTGGGTACTCGAGGGCT 60.364 66.667 18.41 0.00 0.00 5.19
4445 7265 1.076485 GGTGGGTACTCGAGGGCTA 60.076 63.158 18.41 0.00 0.00 3.93
4446 7266 1.390383 GGTGGGTACTCGAGGGCTAC 61.390 65.000 18.41 10.10 0.00 3.58
4447 7267 0.682209 GTGGGTACTCGAGGGCTACA 60.682 60.000 18.41 6.20 0.00 2.74
4448 7268 0.040058 TGGGTACTCGAGGGCTACAA 59.960 55.000 18.41 0.34 0.00 2.41
4449 7269 0.745468 GGGTACTCGAGGGCTACAAG 59.255 60.000 18.41 0.00 0.00 3.16
4450 7270 0.102663 GGTACTCGAGGGCTACAAGC 59.897 60.000 18.41 0.00 41.46 4.01
4475 7295 2.125673 GTGGCGCCGAAGCTCTTA 60.126 61.111 23.90 0.00 36.60 2.10
4499 7319 1.004200 AGTAACTTCAACGGGGCGG 60.004 57.895 0.00 0.00 0.00 6.13
4527 7347 1.067364 TGTCTACCGCTGTTCGTTTGA 59.933 47.619 0.00 0.00 36.19 2.69
4677 7500 4.367023 ACGCGCGCCTTCTTGGTA 62.367 61.111 32.58 0.00 38.35 3.25
4724 7549 4.250305 AACTGCCCGCGGTCAACT 62.250 61.111 26.12 3.79 33.90 3.16
4750 7575 5.116882 GTCAGCTTAATTTATGACCTCGGT 58.883 41.667 0.00 0.00 36.83 4.69
4754 7579 4.386711 CTTAATTTATGACCTCGGTCCCC 58.613 47.826 13.22 0.00 43.97 4.81
4792 7619 0.800631 CGTCCTTTTTAAGCCGACCC 59.199 55.000 0.00 0.00 0.00 4.46
4879 7709 1.628846 CAAACCCTAGCCACCACTACT 59.371 52.381 0.00 0.00 0.00 2.57
4884 7723 2.032620 CCTAGCCACCACTACTACAGG 58.967 57.143 0.00 0.00 0.00 4.00
4944 7808 1.676678 CCGCCATCTCTTTCCCTCGA 61.677 60.000 0.00 0.00 0.00 4.04
4984 7857 4.986645 TCGCGAGCAAAGGCAGCA 62.987 61.111 3.71 0.00 43.22 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 2703 1.224592 GTCCTCCCATGTTGCGGAT 59.775 57.895 0.00 0.00 0.00 4.18
156 2706 0.249120 TGTAGTCCTCCCATGTTGCG 59.751 55.000 0.00 0.00 0.00 4.85
162 2712 1.933021 TCACGTTGTAGTCCTCCCAT 58.067 50.000 0.00 0.00 0.00 4.00
210 2760 2.125512 GCAGCGTCGTCCTTCCAT 60.126 61.111 0.00 0.00 0.00 3.41
244 2794 4.257267 CACTTGTATCAGGTGTGACAGA 57.743 45.455 4.28 0.00 36.83 3.41
373 2939 1.749063 CCAGTCCAGTGATACACGCTA 59.251 52.381 0.00 0.00 39.64 4.26
415 2981 3.013921 AGGAGATGAGAACAGAGTCGTC 58.986 50.000 0.00 0.00 0.00 4.20
472 3053 0.727398 GATCGCACGAAGGGAAAAGG 59.273 55.000 0.00 0.00 42.96 3.11
473 3054 0.370273 CGATCGCACGAAGGGAAAAG 59.630 55.000 0.26 0.00 42.96 2.27
482 3063 0.248907 GAAAGGGATCGATCGCACGA 60.249 55.000 35.12 6.28 46.04 4.35
522 3104 1.795170 AAACACCCACTGATGCGTGC 61.795 55.000 0.00 0.00 38.04 5.34
571 3153 4.687018 ACAACGTTTCATGCTACAATACGA 59.313 37.500 0.00 0.00 0.00 3.43
573 3155 5.685841 ACACAACGTTTCATGCTACAATAC 58.314 37.500 0.00 0.00 0.00 1.89
575 3157 4.829064 ACACAACGTTTCATGCTACAAT 57.171 36.364 0.00 0.00 0.00 2.71
576 3158 4.624336 AACACAACGTTTCATGCTACAA 57.376 36.364 0.00 0.00 32.35 2.41
650 3235 2.263945 CACATATGTCCGTGCGTTACA 58.736 47.619 5.07 0.77 0.00 2.41
651 3236 2.990774 CACATATGTCCGTGCGTTAC 57.009 50.000 5.07 0.00 0.00 2.50
660 3245 8.671384 TTTATGGTAAACTAGCACATATGTCC 57.329 34.615 5.07 0.00 39.21 4.02
739 3324 8.408601 GCATCTCCAACAGATTGTATACATTTT 58.591 33.333 6.36 0.00 40.20 1.82
741 3326 7.285566 AGCATCTCCAACAGATTGTATACATT 58.714 34.615 6.36 2.87 40.20 2.71
742 3327 6.835174 AGCATCTCCAACAGATTGTATACAT 58.165 36.000 6.36 0.00 40.20 2.29
743 3328 6.239217 AGCATCTCCAACAGATTGTATACA 57.761 37.500 0.08 0.08 40.20 2.29
744 3329 6.777526 GAGCATCTCCAACAGATTGTATAC 57.222 41.667 0.00 0.00 40.20 1.47
837 3425 7.282450 CCTTTTTATAGGCCATACTTCGAGTTT 59.718 37.037 5.01 0.00 0.00 2.66
845 3433 6.099269 TCGAACTCCTTTTTATAGGCCATACT 59.901 38.462 5.01 0.00 35.15 2.12
846 3434 6.285990 TCGAACTCCTTTTTATAGGCCATAC 58.714 40.000 5.01 0.00 35.15 2.39
906 3497 3.678548 CCCGGCTAATTTTAGATACGCTC 59.321 47.826 0.00 0.00 32.47 5.03
969 3560 0.597637 GGGCCGGATGATATATCGCG 60.598 60.000 5.05 0.00 0.00 5.87
970 3561 0.249911 GGGGCCGGATGATATATCGC 60.250 60.000 5.05 4.84 0.00 4.58
971 3562 1.069204 CAGGGGCCGGATGATATATCG 59.931 57.143 5.05 0.00 0.00 2.92
972 3563 1.202698 GCAGGGGCCGGATGATATATC 60.203 57.143 5.05 5.73 0.00 1.63
985 3581 2.690510 AGGAGAGAAGGCAGGGGC 60.691 66.667 0.00 0.00 40.13 5.80
1271 3890 0.109597 GATCTGCAACAAAGCACGGG 60.110 55.000 0.00 0.00 40.11 5.28
1274 3893 2.475187 CGCTAGATCTGCAACAAAGCAC 60.475 50.000 5.18 0.00 40.11 4.40
1410 4029 4.388485 TCTGCAGCAAACAGAATTACAGA 58.612 39.130 9.47 0.00 41.10 3.41
1422 4043 1.339438 GGGAGTCATCTCTGCAGCAAA 60.339 52.381 9.47 0.00 40.29 3.68
1443 4066 5.463392 CACGAATCAAGACGATGGATAACAT 59.537 40.000 0.00 0.00 44.18 2.71
1450 4073 2.600420 CACTCACGAATCAAGACGATGG 59.400 50.000 0.00 0.00 33.40 3.51
1474 4097 0.101399 AGAGCTCAACACGCCTATCG 59.899 55.000 17.77 0.00 45.38 2.92
1476 4099 1.186200 TCAGAGCTCAACACGCCTAT 58.814 50.000 17.77 0.00 0.00 2.57
1480 4103 0.445436 CCAATCAGAGCTCAACACGC 59.555 55.000 17.77 0.00 0.00 5.34
1493 4119 1.152652 ACCCCGTGCAAACCAATCA 60.153 52.632 0.00 0.00 0.00 2.57
1610 4236 8.292448 GTGACACCTAAATGCATGGATAATAAG 58.708 37.037 8.47 0.00 0.00 1.73
1611 4237 7.998383 AGTGACACCTAAATGCATGGATAATAA 59.002 33.333 8.47 0.00 0.00 1.40
1616 4242 4.080129 AGAGTGACACCTAAATGCATGGAT 60.080 41.667 8.47 0.00 0.00 3.41
1617 4243 3.264193 AGAGTGACACCTAAATGCATGGA 59.736 43.478 8.47 0.00 0.00 3.41
1623 4249 3.981071 TCCCAGAGTGACACCTAAATG 57.019 47.619 0.84 0.00 0.00 2.32
1626 4252 2.027192 GCAATCCCAGAGTGACACCTAA 60.027 50.000 0.84 0.00 28.30 2.69
1654 4282 4.202441 AGACATAATGCTGGTTAGGCAAG 58.798 43.478 0.00 0.00 43.14 4.01
1660 4288 5.756195 GCATGAAGACATAATGCTGGTTA 57.244 39.130 0.00 0.00 42.70 2.85
1661 4289 4.644103 GCATGAAGACATAATGCTGGTT 57.356 40.909 0.00 0.00 42.70 3.67
1679 4307 6.406177 CCCTGTTTATTCAATTGTAGCAGCAT 60.406 38.462 5.13 0.00 0.00 3.79
1682 4310 6.515272 ACCCTGTTTATTCAATTGTAGCAG 57.485 37.500 5.13 7.25 0.00 4.24
1719 4350 2.429610 ACAACTCGTCAGTAACACTGGT 59.570 45.455 6.48 0.00 45.94 4.00
1720 4351 3.093717 ACAACTCGTCAGTAACACTGG 57.906 47.619 6.48 0.00 45.94 4.00
1904 4535 6.809630 TGTTTTTCATCATCGTTCATACCA 57.190 33.333 0.00 0.00 0.00 3.25
1941 4572 6.818644 TCCAAGTGATCTAGCAAAGTCATAAC 59.181 38.462 0.00 0.00 0.00 1.89
1961 4594 9.099454 GTCCTAGTTAAATACTTCATGTCCAAG 57.901 37.037 0.00 0.00 38.33 3.61
1973 4606 6.092259 CAGTTGCTGTGGTCCTAGTTAAATAC 59.908 42.308 0.00 0.00 0.00 1.89
2065 4699 9.903682 ACATTTTATCAAAACAAGATCACAGAG 57.096 29.630 0.00 0.00 32.37 3.35
2150 4792 3.880490 TCCTTATCTGTTTGCAAACACGT 59.120 39.130 35.10 27.45 43.45 4.49
2152 4794 4.622740 GCATCCTTATCTGTTTGCAAACAC 59.377 41.667 35.10 20.11 43.45 3.32
2163 4805 7.388776 TGAGGATAAAATTCGCATCCTTATCTG 59.611 37.037 13.71 0.00 46.81 2.90
2165 4807 7.672983 TGAGGATAAAATTCGCATCCTTATC 57.327 36.000 13.71 6.21 46.81 1.75
2175 4817 8.768955 CAGGACTAGATTTGAGGATAAAATTCG 58.231 37.037 0.00 0.00 0.00 3.34
2182 4824 4.820775 AGCCAGGACTAGATTTGAGGATA 58.179 43.478 0.00 0.00 0.00 2.59
2202 4844 4.207841 GCATCTTTGACACAACTGAAAAGC 59.792 41.667 0.00 0.00 30.78 3.51
2211 4853 5.450412 GGAAAAGTCAGCATCTTTGACACAA 60.450 40.000 7.96 0.00 45.72 3.33
2220 4862 3.330267 GTTCGAGGAAAAGTCAGCATCT 58.670 45.455 0.00 0.00 0.00 2.90
2241 4883 4.463891 TCCTTAGGTCCTTACTACGTTTGG 59.536 45.833 0.00 0.00 0.00 3.28
2242 4884 5.649782 TCCTTAGGTCCTTACTACGTTTG 57.350 43.478 0.00 0.00 0.00 2.93
2281 4996 1.484240 GGATCACTACAGCAAGGCTCT 59.516 52.381 0.00 0.00 36.40 4.09
2285 5000 2.762887 TCTCTGGATCACTACAGCAAGG 59.237 50.000 0.00 0.00 34.76 3.61
2292 5007 2.621055 AGCGATGTCTCTGGATCACTAC 59.379 50.000 0.00 0.00 0.00 2.73
2301 5016 8.768019 TCATTAATCATTAAAGCGATGTCTCTG 58.232 33.333 0.00 0.00 0.00 3.35
2302 5017 8.893219 TCATTAATCATTAAAGCGATGTCTCT 57.107 30.769 0.00 0.00 0.00 3.10
2521 5236 7.725844 TGATGACATAGAATCAGGTAGAGCTAA 59.274 37.037 0.00 0.00 0.00 3.09
2529 5244 4.350225 AGGCATGATGACATAGAATCAGGT 59.650 41.667 0.00 0.00 37.03 4.00
2530 5245 4.907809 AGGCATGATGACATAGAATCAGG 58.092 43.478 0.00 0.00 36.31 3.86
2571 5286 4.688879 TCGACACCATAAACATTGTCAGAC 59.311 41.667 0.00 0.00 38.64 3.51
2816 5531 8.340618 TGATTAAAAAGCAGCAGTTCTTCTAT 57.659 30.769 0.00 0.00 0.00 1.98
2873 5590 1.000717 GCAGCCTTGAACCGCTTTTTA 60.001 47.619 0.00 0.00 31.40 1.52
2900 5619 2.552373 GGAAACAGGTCCCACCACTAAG 60.552 54.545 0.00 0.00 41.95 2.18
2948 5667 5.790593 TGGTCTGCTACTAGGTTTAAACAG 58.209 41.667 19.57 11.66 0.00 3.16
2987 5706 9.683069 ACTACTTATCAGCAAAATTCTGTTTTG 57.317 29.630 8.47 8.47 41.09 2.44
2988 5707 9.899226 GACTACTTATCAGCAAAATTCTGTTTT 57.101 29.630 0.00 0.00 33.48 2.43
3060 5780 8.371699 AGCCTTACAATGGTGCTAAAATAAAAA 58.628 29.630 0.00 0.00 0.00 1.94
3061 5781 7.902087 AGCCTTACAATGGTGCTAAAATAAAA 58.098 30.769 0.00 0.00 0.00 1.52
3062 5782 7.475137 AGCCTTACAATGGTGCTAAAATAAA 57.525 32.000 0.00 0.00 0.00 1.40
3063 5783 8.760980 ATAGCCTTACAATGGTGCTAAAATAA 57.239 30.769 0.00 0.00 37.98 1.40
3064 5784 8.629158 CAATAGCCTTACAATGGTGCTAAAATA 58.371 33.333 0.00 0.00 37.98 1.40
3065 5785 7.124147 ACAATAGCCTTACAATGGTGCTAAAAT 59.876 33.333 0.00 0.00 37.98 1.82
3066 5786 6.435904 ACAATAGCCTTACAATGGTGCTAAAA 59.564 34.615 0.00 0.00 37.98 1.52
3067 5787 5.949354 ACAATAGCCTTACAATGGTGCTAAA 59.051 36.000 0.00 0.00 37.98 1.85
3068 5788 5.505780 ACAATAGCCTTACAATGGTGCTAA 58.494 37.500 0.00 0.00 37.98 3.09
3069 5789 5.110814 ACAATAGCCTTACAATGGTGCTA 57.889 39.130 0.00 0.00 38.73 3.49
3070 5790 3.968265 ACAATAGCCTTACAATGGTGCT 58.032 40.909 0.00 0.00 36.11 4.40
3071 5791 4.718940 AACAATAGCCTTACAATGGTGC 57.281 40.909 0.00 0.00 0.00 5.01
3107 5828 9.245962 GATTTCAGGATTATTTTGCAAGAGATG 57.754 33.333 0.00 0.00 0.00 2.90
3108 5829 8.974238 TGATTTCAGGATTATTTTGCAAGAGAT 58.026 29.630 0.00 0.00 0.00 2.75
3137 5858 5.393027 CCCAATCTGTTTGCCTGTACAATAC 60.393 44.000 0.00 0.00 33.73 1.89
3148 5869 4.021544 TGACCAAATACCCAATCTGTTTGC 60.022 41.667 0.00 0.00 33.73 3.68
3160 5881 9.586435 CTTCCAAGAATAATTTGACCAAATACC 57.414 33.333 8.23 0.26 39.88 2.73
3189 5910 6.402222 ACTAAATGCAAGTTGGTGTTCAAAA 58.598 32.000 4.75 0.00 33.35 2.44
3209 5930 7.496591 ACACACACGAAATTAGGAAAAGACTAA 59.503 33.333 0.00 0.00 35.14 2.24
3227 5948 3.481839 CTGCATGTTATGAACACACACG 58.518 45.455 0.00 0.00 45.50 4.49
3359 6080 3.057033 GCATCCAGCACACAAAGAAAGAT 60.057 43.478 0.00 0.00 44.79 2.40
3379 6100 7.763528 GGAATAATGTTTACACCATTTGATGCA 59.236 33.333 0.00 0.00 34.51 3.96
3392 6113 7.649306 GGCACATGAGAATGGAATAATGTTTAC 59.351 37.037 0.00 0.00 0.00 2.01
3445 6166 5.199024 ACAAGCTACTGCAGATCAGATAG 57.801 43.478 23.35 11.48 45.72 2.08
3508 6303 4.884744 TGCTTTGTTCCACAACTTAGCTAA 59.115 37.500 5.94 5.94 37.90 3.09
3510 6305 3.287222 TGCTTTGTTCCACAACTTAGCT 58.713 40.909 11.25 0.00 37.90 3.32
3520 6315 3.519579 CACAACAACATGCTTTGTTCCA 58.480 40.909 10.57 0.00 45.55 3.53
3525 6320 3.183574 CAGATGCACAACAACATGCTTTG 59.816 43.478 0.00 0.00 42.55 2.77
3541 6336 2.618709 GTTGGCCAATACTACCAGATGC 59.381 50.000 23.66 0.00 34.28 3.91
3542 6337 3.884895 TGTTGGCCAATACTACCAGATG 58.115 45.455 23.66 0.00 34.28 2.90
3543 6338 4.413520 AGATGTTGGCCAATACTACCAGAT 59.586 41.667 23.66 0.00 34.28 2.90
3544 6339 3.780294 AGATGTTGGCCAATACTACCAGA 59.220 43.478 23.66 0.00 34.28 3.86
3556 6370 5.391312 ACTAATCAAACAAGATGTTGGCC 57.609 39.130 7.59 0.00 40.14 5.36
3565 6379 9.212641 TCTCAGAGATGAAACTAATCAAACAAG 57.787 33.333 0.00 0.00 32.06 3.16
3567 6381 9.730705 AATCTCAGAGATGAAACTAATCAAACA 57.269 29.630 14.02 0.00 34.65 2.83
3609 6423 8.627403 AGATGCACAAACTAAATAATGATCCAG 58.373 33.333 0.00 0.00 0.00 3.86
3637 6451 2.872245 TCAGAAACCAAAGCGAGTTCAG 59.128 45.455 0.00 0.00 0.00 3.02
3666 6480 3.383620 TCTGCACGGCAAAATTCATTT 57.616 38.095 0.35 0.00 38.41 2.32
3939 6755 4.201657 CTCCATGCCACAATACAATCAGA 58.798 43.478 0.00 0.00 0.00 3.27
3940 6756 3.949754 ACTCCATGCCACAATACAATCAG 59.050 43.478 0.00 0.00 0.00 2.90
3941 6757 3.966979 ACTCCATGCCACAATACAATCA 58.033 40.909 0.00 0.00 0.00 2.57
4023 6839 8.316214 ACAAACAGCCAATTTCTTTGATATGAT 58.684 29.630 0.00 0.00 37.53 2.45
4029 6845 5.728471 TCAACAAACAGCCAATTTCTTTGA 58.272 33.333 0.00 0.00 37.53 2.69
4056 6872 2.460669 GCACATTCTTGGGGAAGGATT 58.539 47.619 0.00 0.00 37.88 3.01
4073 6889 1.373590 AATAACCATGTCGCGGGCAC 61.374 55.000 6.13 0.00 0.00 5.01
4136 6956 2.094182 CCACCACTAACATCTACACGCT 60.094 50.000 0.00 0.00 0.00 5.07
4144 6964 4.246458 GAGACAGAACCACCACTAACATC 58.754 47.826 0.00 0.00 0.00 3.06
4145 6965 3.646162 TGAGACAGAACCACCACTAACAT 59.354 43.478 0.00 0.00 0.00 2.71
4148 6968 3.035363 TGTGAGACAGAACCACCACTAA 58.965 45.455 0.00 0.00 0.00 2.24
4150 6970 1.496060 TGTGAGACAGAACCACCACT 58.504 50.000 0.00 0.00 0.00 4.00
4151 6971 2.213499 CTTGTGAGACAGAACCACCAC 58.787 52.381 0.00 0.00 0.00 4.16
4153 6973 2.622064 ACTTGTGAGACAGAACCACC 57.378 50.000 0.00 0.00 0.00 4.61
4156 6976 6.509677 CGAAACTTTACTTGTGAGACAGAACC 60.510 42.308 0.00 0.00 0.00 3.62
4157 6977 6.035758 ACGAAACTTTACTTGTGAGACAGAAC 59.964 38.462 0.00 0.00 0.00 3.01
4158 6978 6.035650 CACGAAACTTTACTTGTGAGACAGAA 59.964 38.462 0.00 0.00 0.00 3.02
4159 6979 5.518847 CACGAAACTTTACTTGTGAGACAGA 59.481 40.000 0.00 0.00 0.00 3.41
4160 6980 5.291128 ACACGAAACTTTACTTGTGAGACAG 59.709 40.000 0.00 0.00 0.00 3.51
4161 6981 5.172934 ACACGAAACTTTACTTGTGAGACA 58.827 37.500 0.00 0.00 0.00 3.41
4162 6982 5.276726 GGACACGAAACTTTACTTGTGAGAC 60.277 44.000 0.00 0.00 0.00 3.36
4163 6983 4.807304 GGACACGAAACTTTACTTGTGAGA 59.193 41.667 0.00 0.00 0.00 3.27
4164 6984 4.809426 AGGACACGAAACTTTACTTGTGAG 59.191 41.667 0.00 0.00 0.00 3.51
4165 6985 4.569162 CAGGACACGAAACTTTACTTGTGA 59.431 41.667 0.00 0.00 0.00 3.58
4166 6986 4.331717 ACAGGACACGAAACTTTACTTGTG 59.668 41.667 0.00 0.00 0.00 3.33
4167 6987 4.331717 CACAGGACACGAAACTTTACTTGT 59.668 41.667 0.00 0.00 0.00 3.16
4168 6988 4.260620 CCACAGGACACGAAACTTTACTTG 60.261 45.833 0.00 0.00 0.00 3.16
4169 6989 3.875134 CCACAGGACACGAAACTTTACTT 59.125 43.478 0.00 0.00 0.00 2.24
4170 6990 3.463944 CCACAGGACACGAAACTTTACT 58.536 45.455 0.00 0.00 0.00 2.24
4171 6991 2.032290 GCCACAGGACACGAAACTTTAC 60.032 50.000 0.00 0.00 0.00 2.01
4172 6992 2.215196 GCCACAGGACACGAAACTTTA 58.785 47.619 0.00 0.00 0.00 1.85
4173 6993 1.021968 GCCACAGGACACGAAACTTT 58.978 50.000 0.00 0.00 0.00 2.66
4174 6994 1.157870 CGCCACAGGACACGAAACTT 61.158 55.000 0.00 0.00 0.00 2.66
4175 6995 1.594293 CGCCACAGGACACGAAACT 60.594 57.895 0.00 0.00 0.00 2.66
4176 6996 0.949105 ATCGCCACAGGACACGAAAC 60.949 55.000 0.00 0.00 38.15 2.78
4177 6997 0.948623 CATCGCCACAGGACACGAAA 60.949 55.000 0.00 0.00 38.15 3.46
4178 6998 1.374125 CATCGCCACAGGACACGAA 60.374 57.895 0.00 0.00 38.15 3.85
4179 6999 2.261361 CATCGCCACAGGACACGA 59.739 61.111 0.00 0.00 39.11 4.35
4180 7000 3.490759 GCATCGCCACAGGACACG 61.491 66.667 0.00 0.00 0.00 4.49
4198 7018 4.479993 CGGGCCTCCCTGAAGCAG 62.480 72.222 0.84 0.00 42.67 4.24
4200 7020 4.475135 GACGGGCCTCCCTGAAGC 62.475 72.222 0.84 0.00 42.67 3.86
4201 7021 2.245438 GAAGACGGGCCTCCCTGAAG 62.245 65.000 0.84 0.00 42.67 3.02
4202 7022 2.203938 AAGACGGGCCTCCCTGAA 60.204 61.111 0.84 0.00 42.67 3.02
4203 7023 2.683933 GAAGACGGGCCTCCCTGA 60.684 66.667 0.84 0.00 42.67 3.86
4204 7024 3.787001 GGAAGACGGGCCTCCCTG 61.787 72.222 0.84 0.00 42.67 4.45
4205 7025 3.564347 AAGGAAGACGGGCCTCCCT 62.564 63.158 0.84 0.00 42.67 4.20
4206 7026 2.603652 AAAGGAAGACGGGCCTCCC 61.604 63.158 0.84 0.00 41.09 4.30
4207 7027 1.377333 CAAAGGAAGACGGGCCTCC 60.377 63.158 0.84 0.06 32.07 4.30
4208 7028 0.673956 GTCAAAGGAAGACGGGCCTC 60.674 60.000 0.84 0.00 32.07 4.70
4209 7029 1.375326 GTCAAAGGAAGACGGGCCT 59.625 57.895 0.84 0.00 35.61 5.19
4210 7030 3.982829 GTCAAAGGAAGACGGGCC 58.017 61.111 0.00 0.00 0.00 5.80
4215 7035 1.566018 CGCCACCGTCAAAGGAAGAC 61.566 60.000 0.00 0.00 34.73 3.01
4216 7036 1.301401 CGCCACCGTCAAAGGAAGA 60.301 57.895 0.00 0.00 34.73 2.87
4217 7037 1.301401 TCGCCACCGTCAAAGGAAG 60.301 57.895 0.00 0.00 35.54 3.46
4218 7038 1.595929 GTCGCCACCGTCAAAGGAA 60.596 57.895 0.00 0.00 35.54 3.36
4219 7039 2.029964 GTCGCCACCGTCAAAGGA 59.970 61.111 0.00 0.00 35.54 3.36
4220 7040 3.047877 GGTCGCCACCGTCAAAGG 61.048 66.667 0.00 0.00 35.54 3.11
4247 7067 3.668980 AAATTGCATGGCCAGGCGC 62.669 57.895 34.60 24.82 41.64 6.53
4248 7068 1.078988 AAAATTGCATGGCCAGGCG 60.079 52.632 34.60 16.03 41.64 5.52
4249 7069 2.473457 CAAAATTGCATGGCCAGGC 58.527 52.632 34.60 34.60 38.80 4.85
4276 7096 3.400054 GAGGGAAGGACGGGGGTG 61.400 72.222 0.00 0.00 0.00 4.61
4277 7097 4.735599 GGAGGGAAGGACGGGGGT 62.736 72.222 0.00 0.00 0.00 4.95
4279 7099 2.540842 TTAGGGAGGGAAGGACGGGG 62.541 65.000 0.00 0.00 0.00 5.73
4280 7100 1.002533 TTAGGGAGGGAAGGACGGG 59.997 63.158 0.00 0.00 0.00 5.28
4281 7101 0.616679 TGTTAGGGAGGGAAGGACGG 60.617 60.000 0.00 0.00 0.00 4.79
4282 7102 1.413077 GATGTTAGGGAGGGAAGGACG 59.587 57.143 0.00 0.00 0.00 4.79
4283 7103 2.478292 TGATGTTAGGGAGGGAAGGAC 58.522 52.381 0.00 0.00 0.00 3.85
4284 7104 2.961536 TGATGTTAGGGAGGGAAGGA 57.038 50.000 0.00 0.00 0.00 3.36
4285 7105 2.373502 GGATGATGTTAGGGAGGGAAGG 59.626 54.545 0.00 0.00 0.00 3.46
4286 7106 2.373502 GGGATGATGTTAGGGAGGGAAG 59.626 54.545 0.00 0.00 0.00 3.46
4287 7107 2.294195 TGGGATGATGTTAGGGAGGGAA 60.294 50.000 0.00 0.00 0.00 3.97
4288 7108 1.296832 TGGGATGATGTTAGGGAGGGA 59.703 52.381 0.00 0.00 0.00 4.20
4289 7109 1.701847 CTGGGATGATGTTAGGGAGGG 59.298 57.143 0.00 0.00 0.00 4.30
4290 7110 1.072965 GCTGGGATGATGTTAGGGAGG 59.927 57.143 0.00 0.00 0.00 4.30
4291 7111 2.053244 AGCTGGGATGATGTTAGGGAG 58.947 52.381 0.00 0.00 0.00 4.30
4292 7112 1.770658 CAGCTGGGATGATGTTAGGGA 59.229 52.381 5.57 0.00 0.00 4.20
4293 7113 1.770658 TCAGCTGGGATGATGTTAGGG 59.229 52.381 15.13 0.00 0.00 3.53
4294 7114 3.784511 ATCAGCTGGGATGATGTTAGG 57.215 47.619 15.13 0.00 36.07 2.69
4295 7115 4.518211 GGAAATCAGCTGGGATGATGTTAG 59.482 45.833 15.13 0.00 37.46 2.34
4296 7116 4.166725 AGGAAATCAGCTGGGATGATGTTA 59.833 41.667 15.13 0.00 37.46 2.41
4297 7117 3.053095 AGGAAATCAGCTGGGATGATGTT 60.053 43.478 15.13 0.00 37.46 2.71
4298 7118 2.512896 AGGAAATCAGCTGGGATGATGT 59.487 45.455 15.13 0.00 37.46 3.06
4299 7119 3.225177 AGGAAATCAGCTGGGATGATG 57.775 47.619 15.13 0.00 37.46 3.07
4300 7120 4.237843 TCTAGGAAATCAGCTGGGATGAT 58.762 43.478 15.13 0.00 39.06 2.45
4301 7121 3.657610 TCTAGGAAATCAGCTGGGATGA 58.342 45.455 15.13 0.00 0.00 2.92
4302 7122 4.325119 CATCTAGGAAATCAGCTGGGATG 58.675 47.826 15.13 10.53 0.00 3.51
4303 7123 3.330110 CCATCTAGGAAATCAGCTGGGAT 59.670 47.826 15.13 0.00 41.22 3.85
4304 7124 2.707791 CCATCTAGGAAATCAGCTGGGA 59.292 50.000 15.13 0.00 41.22 4.37
4305 7125 2.441001 ACCATCTAGGAAATCAGCTGGG 59.559 50.000 15.13 4.75 41.22 4.45
4306 7126 3.135348 TGACCATCTAGGAAATCAGCTGG 59.865 47.826 15.13 0.00 41.22 4.85
4307 7127 4.412796 TGACCATCTAGGAAATCAGCTG 57.587 45.455 7.63 7.63 41.22 4.24
4308 7128 4.041444 GGATGACCATCTAGGAAATCAGCT 59.959 45.833 9.56 0.00 41.22 4.24
4309 7129 4.202398 TGGATGACCATCTAGGAAATCAGC 60.202 45.833 9.56 0.00 41.77 4.26
4310 7130 5.557576 TGGATGACCATCTAGGAAATCAG 57.442 43.478 9.56 0.00 41.77 2.90
4321 7141 4.230624 ACGATAGCGGTGGATGACCATC 62.231 54.545 4.97 1.50 43.94 3.51
4322 7142 2.370774 ACGATAGCGGTGGATGACCAT 61.371 52.381 4.97 0.00 43.94 3.55
4323 7143 1.040893 ACGATAGCGGTGGATGACCA 61.041 55.000 4.97 0.00 42.54 4.02
4324 7144 0.597637 CACGATAGCGGTGGATGACC 60.598 60.000 4.97 0.00 43.17 4.02
4325 7145 0.102481 ACACGATAGCGGTGGATGAC 59.898 55.000 4.97 0.00 43.17 3.06
4326 7146 0.102300 CACACGATAGCGGTGGATGA 59.898 55.000 4.97 0.00 43.17 2.92
4327 7147 2.593376 CACACGATAGCGGTGGATG 58.407 57.895 4.97 0.00 43.17 3.51
4331 7151 0.179121 TTAGCCACACGATAGCGGTG 60.179 55.000 4.97 10.00 43.17 4.94
4332 7152 0.179119 GTTAGCCACACGATAGCGGT 60.179 55.000 4.97 0.00 43.17 5.68
4333 7153 0.102481 AGTTAGCCACACGATAGCGG 59.898 55.000 4.97 0.00 43.17 5.52
4334 7154 1.478137 GAGTTAGCCACACGATAGCG 58.522 55.000 0.00 0.00 44.79 4.26
4335 7155 1.409427 AGGAGTTAGCCACACGATAGC 59.591 52.381 0.00 0.00 42.67 2.97
4336 7156 2.223829 CCAGGAGTTAGCCACACGATAG 60.224 54.545 0.00 0.00 46.19 2.08
4337 7157 1.754803 CCAGGAGTTAGCCACACGATA 59.245 52.381 0.00 0.00 0.00 2.92
4338 7158 0.537188 CCAGGAGTTAGCCACACGAT 59.463 55.000 0.00 0.00 0.00 3.73
4339 7159 0.541063 TCCAGGAGTTAGCCACACGA 60.541 55.000 0.00 0.00 0.00 4.35
4340 7160 0.537188 ATCCAGGAGTTAGCCACACG 59.463 55.000 0.00 0.00 0.00 4.49
4341 7161 2.633488 GAATCCAGGAGTTAGCCACAC 58.367 52.381 0.00 0.00 0.00 3.82
4342 7162 1.559682 GGAATCCAGGAGTTAGCCACA 59.440 52.381 0.00 0.00 0.00 4.17
4343 7163 1.840635 AGGAATCCAGGAGTTAGCCAC 59.159 52.381 0.61 0.00 0.00 5.01
4344 7164 2.119495 GAGGAATCCAGGAGTTAGCCA 58.881 52.381 0.61 0.00 0.00 4.75
4345 7165 1.418264 GGAGGAATCCAGGAGTTAGCC 59.582 57.143 0.61 0.00 0.00 3.93
4346 7166 1.069358 CGGAGGAATCCAGGAGTTAGC 59.931 57.143 0.61 0.00 0.00 3.09
4347 7167 2.362717 GTCGGAGGAATCCAGGAGTTAG 59.637 54.545 0.61 0.00 0.00 2.34
4348 7168 2.385803 GTCGGAGGAATCCAGGAGTTA 58.614 52.381 0.61 0.00 0.00 2.24
4349 7169 1.196012 GTCGGAGGAATCCAGGAGTT 58.804 55.000 0.61 0.00 0.00 3.01
4350 7170 1.038130 CGTCGGAGGAATCCAGGAGT 61.038 60.000 0.61 0.00 0.00 3.85
4351 7171 1.736586 CGTCGGAGGAATCCAGGAG 59.263 63.158 0.61 0.00 0.00 3.69
4352 7172 2.423898 GCGTCGGAGGAATCCAGGA 61.424 63.158 0.61 0.00 0.00 3.86
4353 7173 1.961180 AAGCGTCGGAGGAATCCAGG 61.961 60.000 0.61 0.00 0.00 4.45
4354 7174 0.807667 CAAGCGTCGGAGGAATCCAG 60.808 60.000 0.61 0.00 0.00 3.86
4355 7175 1.218047 CAAGCGTCGGAGGAATCCA 59.782 57.895 0.61 0.00 0.00 3.41
4356 7176 2.174319 GCAAGCGTCGGAGGAATCC 61.174 63.158 1.18 0.00 0.00 3.01
4357 7177 1.153549 AGCAAGCGTCGGAGGAATC 60.154 57.895 1.18 0.00 0.00 2.52
4358 7178 1.448540 CAGCAAGCGTCGGAGGAAT 60.449 57.895 1.18 0.00 0.00 3.01
4359 7179 1.888436 ATCAGCAAGCGTCGGAGGAA 61.888 55.000 1.18 0.00 0.00 3.36
4360 7180 1.888436 AATCAGCAAGCGTCGGAGGA 61.888 55.000 1.18 0.00 0.00 3.71
4361 7181 1.424493 GAATCAGCAAGCGTCGGAGG 61.424 60.000 0.00 0.00 0.00 4.30
4362 7182 1.424493 GGAATCAGCAAGCGTCGGAG 61.424 60.000 0.00 0.00 0.00 4.63
4363 7183 1.447838 GGAATCAGCAAGCGTCGGA 60.448 57.895 0.00 0.00 0.00 4.55
4364 7184 2.464459 GGGAATCAGCAAGCGTCGG 61.464 63.158 0.00 0.00 0.00 4.79
4365 7185 1.448540 AGGGAATCAGCAAGCGTCG 60.449 57.895 0.00 0.00 0.00 5.12
4366 7186 1.986575 GCAGGGAATCAGCAAGCGTC 61.987 60.000 0.00 0.00 0.00 5.19
4367 7187 2.042831 GCAGGGAATCAGCAAGCGT 61.043 57.895 0.00 0.00 0.00 5.07
4368 7188 2.796651 GCAGGGAATCAGCAAGCG 59.203 61.111 0.00 0.00 0.00 4.68
4369 7189 2.796651 CGCAGGGAATCAGCAAGC 59.203 61.111 0.00 0.00 0.00 4.01
4370 7190 2.796651 GCGCAGGGAATCAGCAAG 59.203 61.111 0.30 0.00 0.00 4.01
4371 7191 3.126879 CGCGCAGGGAATCAGCAA 61.127 61.111 8.75 0.00 46.37 3.91
4404 7224 1.798735 CAGGGAATCAGCAAGCGTG 59.201 57.895 0.00 0.00 0.00 5.34
4405 7225 2.042831 GCAGGGAATCAGCAAGCGT 61.043 57.895 0.00 0.00 0.00 5.07
4406 7226 2.796651 GCAGGGAATCAGCAAGCG 59.203 61.111 0.00 0.00 0.00 4.68
4407 7227 2.796651 CGCAGGGAATCAGCAAGC 59.203 61.111 0.00 0.00 0.00 4.01
4408 7228 2.796651 GCGCAGGGAATCAGCAAG 59.203 61.111 0.30 0.00 0.00 4.01
4409 7229 3.126879 CGCGCAGGGAATCAGCAA 61.127 61.111 8.75 0.00 46.37 3.91
4420 7240 4.814294 GAGTACCCACCCGCGCAG 62.814 72.222 8.75 0.00 0.00 5.18
4423 7243 4.189188 CTCGAGTACCCACCCGCG 62.189 72.222 3.62 0.00 0.00 6.46
4424 7244 3.834799 CCTCGAGTACCCACCCGC 61.835 72.222 12.31 0.00 0.00 6.13
4425 7245 3.145551 CCCTCGAGTACCCACCCG 61.146 72.222 12.31 0.00 0.00 5.28
4426 7246 2.578586 TAGCCCTCGAGTACCCACCC 62.579 65.000 12.31 0.00 0.00 4.61
4427 7247 1.076485 TAGCCCTCGAGTACCCACC 60.076 63.158 12.31 0.00 0.00 4.61
4428 7248 0.682209 TGTAGCCCTCGAGTACCCAC 60.682 60.000 12.31 3.31 0.00 4.61
4429 7249 0.040058 TTGTAGCCCTCGAGTACCCA 59.960 55.000 12.31 0.00 0.00 4.51
4430 7250 0.745468 CTTGTAGCCCTCGAGTACCC 59.255 60.000 12.31 0.00 0.00 3.69
4431 7251 0.102663 GCTTGTAGCCCTCGAGTACC 59.897 60.000 12.31 0.00 34.48 3.34
4432 7252 3.644774 GCTTGTAGCCCTCGAGTAC 57.355 57.895 12.31 8.14 34.48 2.73
4442 7262 3.400054 ACCTCCCGGGCTTGTAGC 61.400 66.667 18.49 0.00 41.46 3.58
4443 7263 2.584608 CACCTCCCGGGCTTGTAG 59.415 66.667 18.49 7.51 39.10 2.74
4444 7264 3.006728 CCACCTCCCGGGCTTGTA 61.007 66.667 18.49 0.00 39.10 2.41
4471 7291 7.325694 CCCCGTTGAAGTTACTCTTATTAAGA 58.674 38.462 6.01 6.01 36.40 2.10
4472 7292 6.036844 GCCCCGTTGAAGTTACTCTTATTAAG 59.963 42.308 0.00 0.00 36.40 1.85
4475 7295 4.259356 GCCCCGTTGAAGTTACTCTTATT 58.741 43.478 0.00 0.00 36.40 1.40
4483 7303 2.358984 GCCGCCCCGTTGAAGTTA 60.359 61.111 0.00 0.00 0.00 2.24
4499 7319 0.451783 CAGCGGTAGACAAAATGGGC 59.548 55.000 0.00 0.00 0.00 5.36
4527 7347 2.589442 TTTTTGTCCGCGCCGACT 60.589 55.556 25.39 0.00 33.70 4.18
4551 7371 4.058732 TTTGGTCGGCGCGCTAGA 62.059 61.111 32.29 26.31 0.00 2.43
4772 7597 0.167470 GGTCGGCTTAAAAAGGACGC 59.833 55.000 0.00 0.00 33.52 5.19
4850 7680 3.599285 CTAGGGTTTGCCGGCGACA 62.599 63.158 27.40 13.29 34.97 4.35
4879 7709 0.343372 AAGAGCCCCATCTCCCTGTA 59.657 55.000 0.00 0.00 33.66 2.74
4965 7835 2.740055 CTGCCTTTGCTCGCGAGT 60.740 61.111 34.46 0.00 38.71 4.18
4971 7844 1.785041 TTGACGTGCTGCCTTTGCTC 61.785 55.000 0.00 0.00 38.71 4.26
4972 7845 1.823470 TTGACGTGCTGCCTTTGCT 60.823 52.632 0.00 0.00 38.71 3.91
5004 7877 3.390521 CCAGTGCCACTCCGCCTA 61.391 66.667 0.00 0.00 0.00 3.93
5040 7913 4.781616 TGGCATCGGGGTACGGGA 62.782 66.667 0.00 0.00 44.45 5.14
5041 7914 4.540735 GTGGCATCGGGGTACGGG 62.541 72.222 0.00 0.00 44.45 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.