Multiple sequence alignment - TraesCS1B01G293700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G293700 chr1B 100.000 5832 0 0 1 5832 511441110 511446941 0.000000e+00 10770.0
1 TraesCS1B01G293700 chr1B 100.000 2719 0 0 6132 8850 511447241 511449959 0.000000e+00 5022.0
2 TraesCS1B01G293700 chr1B 95.533 582 20 4 1 581 328268311 328268887 0.000000e+00 926.0
3 TraesCS1B01G293700 chr1B 87.798 336 38 3 4353 4685 67055290 67054955 3.000000e-104 390.0
4 TraesCS1B01G293700 chr1B 97.596 208 5 0 377 584 511435806 511435599 3.040000e-94 357.0
5 TraesCS1B01G293700 chr1B 97.436 195 5 0 388 582 328262678 328262484 5.120000e-87 333.0
6 TraesCS1B01G293700 chr1D 93.514 2544 93 24 6132 8634 381309807 381312319 0.000000e+00 3718.0
7 TraesCS1B01G293700 chr1D 96.244 2183 76 2 3652 5828 381307532 381309714 0.000000e+00 3572.0
8 TraesCS1B01G293700 chr1D 93.673 2118 75 19 582 2662 381304158 381306253 0.000000e+00 3114.0
9 TraesCS1B01G293700 chr1D 97.026 908 16 5 2682 3587 381306239 381307137 0.000000e+00 1517.0
10 TraesCS1B01G293700 chr1D 87.202 336 39 4 4353 4685 47331088 47330754 6.480000e-101 379.0
11 TraesCS1B01G293700 chr1D 96.070 229 8 1 1 228 438036258 438036486 1.090000e-98 372.0
12 TraesCS1B01G293700 chr1D 93.814 97 6 0 3442 3538 313208276 313208372 7.160000e-31 147.0
13 TraesCS1B01G293700 chr1D 93.878 98 4 2 3442 3538 381307088 381306992 7.160000e-31 147.0
14 TraesCS1B01G293700 chr1D 95.238 63 0 3 8781 8843 381312308 381312367 7.310000e-16 97.1
15 TraesCS1B01G293700 chr1A 92.488 2556 93 41 6134 8631 481928404 481930918 0.000000e+00 3565.0
16 TraesCS1B01G293700 chr1A 92.329 2151 78 39 582 2662 481921547 481923680 0.000000e+00 2977.0
17 TraesCS1B01G293700 chr1A 97.366 987 21 2 2682 3668 481923666 481924647 0.000000e+00 1674.0
18 TraesCS1B01G293700 chr1A 95.666 969 38 3 3651 4615 481924834 481925802 0.000000e+00 1554.0
19 TraesCS1B01G293700 chr1A 94.162 668 24 7 5175 5828 481927322 481927988 0.000000e+00 1003.0
20 TraesCS1B01G293700 chr1A 93.639 393 15 5 4547 4939 481925768 481926150 5.960000e-161 579.0
21 TraesCS1B01G293700 chr1A 87.834 337 34 6 4353 4685 47213011 47212678 1.080000e-103 388.0
22 TraesCS1B01G293700 chr1A 95.455 242 11 0 4930 5171 481926561 481926802 3.880000e-103 387.0
23 TraesCS1B01G293700 chr1A 94.898 98 3 2 3442 3538 481924517 481924421 1.540000e-32 152.0
24 TraesCS1B01G293700 chr1A 90.566 106 6 3 4696 4797 106228181 106228076 4.310000e-28 137.0
25 TraesCS1B01G293700 chr1A 98.077 52 1 0 8796 8847 481930933 481930984 3.400000e-14 91.6
26 TraesCS1B01G293700 chr6B 99.484 581 3 0 1 581 707282431 707283011 0.000000e+00 1057.0
27 TraesCS1B01G293700 chr6B 98.058 206 4 0 377 582 707277127 707276922 8.450000e-95 359.0
28 TraesCS1B01G293700 chr6B 98.000 150 3 0 8634 8783 507622239 507622090 2.450000e-65 261.0
29 TraesCS1B01G293700 chr6B 90.654 107 10 0 3440 3546 129450873 129450979 9.260000e-30 143.0
30 TraesCS1B01G293700 chr6B 89.720 107 5 2 4695 4797 231351237 231351341 2.000000e-26 132.0
31 TraesCS1B01G293700 chr2A 99.312 581 4 0 1 581 652295814 652295234 0.000000e+00 1051.0
32 TraesCS1B01G293700 chr2A 98.058 206 4 0 377 582 652297229 652297434 8.450000e-95 359.0
33 TraesCS1B01G293700 chr2A 83.168 202 27 6 1 200 595347331 595347135 2.540000e-40 178.0
34 TraesCS1B01G293700 chr2A 84.800 125 14 2 4677 4797 559118534 559118411 4.340000e-23 121.0
35 TraesCS1B01G293700 chr7A 96.847 444 9 5 139 581 701879820 701879381 0.000000e+00 737.0
36 TraesCS1B01G293700 chr7A 87.349 332 36 5 4356 4686 692498643 692498317 8.390000e-100 375.0
37 TraesCS1B01G293700 chr7A 96.190 210 6 1 375 582 701883962 701884171 8.510000e-90 342.0
38 TraesCS1B01G293700 chr7A 98.000 150 3 0 8634 8783 155307736 155307587 2.450000e-65 261.0
39 TraesCS1B01G293700 chr7D 85.851 523 40 22 1 514 87242202 87242699 7.870000e-145 525.0
40 TraesCS1B01G293700 chr7D 87.257 463 25 19 146 581 78265505 78265050 1.720000e-136 497.0
41 TraesCS1B01G293700 chr7D 95.633 229 9 1 1 228 17372004 17371776 5.050000e-97 366.0
42 TraesCS1B01G293700 chr7D 86.416 346 10 4 1 312 78265873 78265531 2.370000e-90 344.0
43 TraesCS1B01G293700 chr3A 88.822 331 35 2 4353 4683 40523 40195 1.070000e-108 405.0
44 TraesCS1B01G293700 chr3A 88.218 331 37 2 4353 4683 63440 63112 2.320000e-105 394.0
45 TraesCS1B01G293700 chr3A 83.163 196 33 0 6530 6725 607057694 607057499 7.060000e-41 180.0
46 TraesCS1B01G293700 chr3A 81.221 213 33 7 6798 7007 607057413 607057205 1.980000e-36 165.0
47 TraesCS1B01G293700 chr3A 92.857 84 6 0 2846 2929 607059265 607059182 1.210000e-23 122.0
48 TraesCS1B01G293700 chr3A 94.667 75 3 1 219 293 421676890 421676963 2.020000e-21 115.0
49 TraesCS1B01G293700 chr3B 86.826 334 40 3 4356 4687 404620022 404620353 3.900000e-98 370.0
50 TraesCS1B01G293700 chr3B 83.069 189 32 0 6530 6718 617410412 617410224 1.180000e-38 172.0
51 TraesCS1B01G293700 chr5D 98.667 150 2 0 8634 8783 497958245 497958394 5.270000e-67 267.0
52 TraesCS1B01G293700 chr5D 83.663 202 26 6 1 200 170276484 170276680 5.460000e-42 183.0
53 TraesCS1B01G293700 chr5B 98.000 150 3 0 8634 8783 81181682 81181831 2.450000e-65 261.0
54 TraesCS1B01G293700 chr5B 88.785 107 8 1 4695 4797 55371045 55370939 2.590000e-25 128.0
55 TraesCS1B01G293700 chr4B 97.351 151 4 0 8634 8784 333517468 333517318 3.170000e-64 257.0
56 TraesCS1B01G293700 chr4B 93.000 100 7 0 3442 3541 253703925 253704024 7.160000e-31 147.0
57 TraesCS1B01G293700 chr7B 97.931 145 3 0 8634 8778 26033266 26033410 1.470000e-62 252.0
58 TraesCS1B01G293700 chr7B 95.973 149 6 0 8635 8783 606150002 606149854 8.880000e-60 243.0
59 TraesCS1B01G293700 chr4A 93.333 150 9 1 8634 8783 621736728 621736580 4.160000e-53 220.0
60 TraesCS1B01G293700 chr4A 93.000 100 7 0 3442 3541 300455737 300455638 7.160000e-31 147.0
61 TraesCS1B01G293700 chr3D 82.653 196 34 0 6530 6725 464042620 464042425 3.280000e-39 174.0
62 TraesCS1B01G293700 chr3D 81.188 202 32 6 6808 7007 464042318 464042121 3.310000e-34 158.0
63 TraesCS1B01G293700 chr3D 94.737 76 4 0 2846 2921 464043940 464043865 1.560000e-22 119.0
64 TraesCS1B01G293700 chr3D 86.517 89 8 3 226 311 310707904 310707817 2.630000e-15 95.3
65 TraesCS1B01G293700 chr5A 95.370 108 5 0 8678 8785 22060898 22060791 1.180000e-38 172.0
66 TraesCS1B01G293700 chr4D 95.000 100 5 0 3442 3541 210457768 210457867 3.310000e-34 158.0
67 TraesCS1B01G293700 chr6D 89.720 107 7 3 4695 4797 133209725 133209831 5.570000e-27 134.0
68 TraesCS1B01G293700 chr2D 89.423 104 7 3 4693 4792 380407672 380407775 2.590000e-25 128.0
69 TraesCS1B01G293700 chr6A 89.320 103 7 1 4695 4797 172114668 172114766 9.330000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G293700 chr1B 511441110 511449959 8849 False 7896.000 10770 100.00000 1 8850 2 chr1B.!!$F2 8849
1 TraesCS1B01G293700 chr1B 328268311 328268887 576 False 926.000 926 95.53300 1 581 1 chr1B.!!$F1 580
2 TraesCS1B01G293700 chr1D 381304158 381312367 8209 False 2403.620 3718 95.13900 582 8843 5 chr1D.!!$F3 8261
3 TraesCS1B01G293700 chr1A 481921547 481930984 9437 False 1478.825 3565 94.89775 582 8847 8 chr1A.!!$F1 8265
4 TraesCS1B01G293700 chr6B 707282431 707283011 580 False 1057.000 1057 99.48400 1 581 1 chr6B.!!$F3 580
5 TraesCS1B01G293700 chr2A 652295234 652295814 580 True 1051.000 1051 99.31200 1 581 1 chr2A.!!$R3 580
6 TraesCS1B01G293700 chr7D 78265050 78265873 823 True 420.500 497 86.83650 1 581 2 chr7D.!!$R2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 968 1.066071 CCGTCTCTTTCCTCCCCTTTC 60.066 57.143 0.00 0.0 0.00 2.62 F
1427 1767 0.248289 GCGGTTAGTCAGTGGCCTTA 59.752 55.000 3.32 0.0 0.00 2.69 F
2488 2850 0.250793 ACACTGTCACCACCGTTTCA 59.749 50.000 0.00 0.0 0.00 2.69 F
2928 3291 1.207329 AGGACATCGGTAGTTGCCTTC 59.793 52.381 0.00 0.0 0.00 3.46 F
3630 3995 1.926426 CTCCCCCACCCAATCTCACC 61.926 65.000 0.00 0.0 0.00 4.02 F
4746 5479 2.604046 AACGGATGTATCTGGCACTC 57.396 50.000 5.74 0.0 37.50 3.51 F
5656 7339 1.066303 TCAAAAAGTCACGCGCCAATT 59.934 42.857 5.73 0.0 0.00 2.32 F
5665 7348 2.287644 TCACGCGCCAATTCTTGATATG 59.712 45.455 5.73 0.0 0.00 1.78 F
7411 9242 0.034767 CTCCTCAAGGATGGCTGCAA 60.035 55.000 0.50 0.0 44.46 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2574 2936 1.068610 GCATGCTGGTAAGTTTTCGCA 60.069 47.619 11.37 0.00 0.00 5.10 R
3207 3570 4.986659 ACACCGTTATCGAGCAATAATACC 59.013 41.667 0.00 0.00 39.71 2.73 R
4353 5050 1.270147 GCGCGGGGTATCATCTAGTTT 60.270 52.381 8.83 0.00 0.00 2.66 R
4762 5495 3.185594 CGGAATTAGTTGACGCTCAAACA 59.814 43.478 2.65 0.00 38.22 2.83 R
5226 6895 3.826157 CTGGTTATGGCACCTTTGAAAGA 59.174 43.478 6.49 0.00 37.75 2.52 R
6549 8346 0.539438 GAACAACAGGTGGGGCATCA 60.539 55.000 0.00 0.00 0.00 3.07 R
7227 9058 1.556911 TCAAGAAGAGGAGCCATGGTC 59.443 52.381 14.67 9.55 0.00 4.02 R
7654 9485 1.745653 GACAAGGCATGACTAAAGGCC 59.254 52.381 0.00 0.00 46.77 5.19 R
8715 10573 0.029834 GCACATCAATCCGTCCATGC 59.970 55.000 0.00 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 164 1.748879 ACAACAGCAGCAACACCGT 60.749 52.632 0.00 0.00 0.00 4.83
699 968 1.066071 CCGTCTCTTTCCTCCCCTTTC 60.066 57.143 0.00 0.00 0.00 2.62
919 1220 3.525545 GCCCTACCGTCTCCCGTC 61.526 72.222 0.00 0.00 33.66 4.79
920 1221 2.832201 CCCTACCGTCTCCCGTCC 60.832 72.222 0.00 0.00 33.66 4.79
921 1222 3.207669 CCTACCGTCTCCCGTCCG 61.208 72.222 0.00 0.00 33.66 4.79
922 1223 3.885521 CTACCGTCTCCCGTCCGC 61.886 72.222 0.00 0.00 33.66 5.54
1029 1342 3.014085 GCAGGTGTACAGCCGCCTA 62.014 63.158 20.13 0.00 43.44 3.93
1331 1671 3.032609 GATCATCACGCGCTCCGG 61.033 66.667 5.73 0.00 42.52 5.14
1420 1760 2.564975 CCGACGCGGTTAGTCAGT 59.435 61.111 12.47 0.00 42.73 3.41
1422 1762 1.800315 CGACGCGGTTAGTCAGTGG 60.800 63.158 12.47 0.00 38.46 4.00
1424 1764 2.813908 CGCGGTTAGTCAGTGGCC 60.814 66.667 0.00 0.00 0.00 5.36
1425 1765 2.663196 GCGGTTAGTCAGTGGCCT 59.337 61.111 3.32 0.00 0.00 5.19
1426 1766 1.003718 GCGGTTAGTCAGTGGCCTT 60.004 57.895 3.32 0.00 0.00 4.35
1427 1767 0.248289 GCGGTTAGTCAGTGGCCTTA 59.752 55.000 3.32 0.00 0.00 2.69
1428 1768 1.338389 GCGGTTAGTCAGTGGCCTTAA 60.338 52.381 3.32 0.00 0.00 1.85
1429 1769 2.679930 GCGGTTAGTCAGTGGCCTTAAT 60.680 50.000 3.32 0.00 0.00 1.40
1430 1770 3.195661 CGGTTAGTCAGTGGCCTTAATC 58.804 50.000 3.32 0.00 0.00 1.75
1431 1771 3.369052 CGGTTAGTCAGTGGCCTTAATCA 60.369 47.826 3.32 0.00 0.00 2.57
1432 1772 4.192317 GGTTAGTCAGTGGCCTTAATCAG 58.808 47.826 3.32 0.00 0.00 2.90
1433 1773 4.323562 GGTTAGTCAGTGGCCTTAATCAGT 60.324 45.833 3.32 0.00 0.00 3.41
1434 1774 3.340814 AGTCAGTGGCCTTAATCAGTG 57.659 47.619 3.32 0.00 36.09 3.66
1435 1775 1.740025 GTCAGTGGCCTTAATCAGTGC 59.260 52.381 3.32 0.00 35.08 4.40
1447 1787 0.754957 ATCAGTGCCTCCTCTCCTCG 60.755 60.000 0.00 0.00 0.00 4.63
1448 1788 1.680651 CAGTGCCTCCTCTCCTCGT 60.681 63.158 0.00 0.00 0.00 4.18
1479 1822 1.151777 TCGCCGCATTTCGATCTTCC 61.152 55.000 0.00 0.00 41.67 3.46
1533 1881 7.524065 GTTTTAAGTGACTGTAACAACTGTGT 58.476 34.615 0.00 0.00 40.75 3.72
1774 2129 9.202273 CTTAGCTATTTCCTACTTCATGTGATC 57.798 37.037 0.00 0.00 0.00 2.92
1854 2209 4.914312 CGGTTTGTCAAGCGTCTTATAA 57.086 40.909 0.00 0.00 46.57 0.98
1865 2220 7.588488 GTCAAGCGTCTTATAAGATCTAGTCAC 59.412 40.741 17.95 6.93 37.39 3.67
1975 2330 1.377725 CCTCTGAATGCCCGCAAGT 60.378 57.895 0.00 0.00 0.00 3.16
2077 2434 7.126421 ACATCTGACTGGTTTATTCCACTCTAT 59.874 37.037 0.00 0.00 33.55 1.98
2128 2485 3.758023 CCACATAATTGTCTTGCTCACCA 59.242 43.478 0.00 0.00 32.34 4.17
2164 2525 6.670077 TGTATATTTTGCATACACGCTTCA 57.330 33.333 0.00 0.00 34.69 3.02
2388 2750 1.202177 CCCCGAACGCATTCAGATTTG 60.202 52.381 0.00 0.00 34.14 2.32
2476 2838 3.181469 TGTTGGTCAGGAGTTACACTGTC 60.181 47.826 6.90 2.52 36.17 3.51
2488 2850 0.250793 ACACTGTCACCACCGTTTCA 59.749 50.000 0.00 0.00 0.00 2.69
2574 2936 1.850345 TCCTTTGTGGTGAGTTCCCTT 59.150 47.619 0.00 0.00 37.07 3.95
2765 3128 5.912360 ACACTAAGGCGTGTTAGTTTTAC 57.088 39.130 8.37 0.00 45.27 2.01
2928 3291 1.207329 AGGACATCGGTAGTTGCCTTC 59.793 52.381 0.00 0.00 0.00 3.46
3013 3376 6.429521 ACTTAAGTTACTCACTTGGGCTTA 57.570 37.500 1.12 0.00 45.98 3.09
3021 3384 7.180408 AGTTACTCACTTGGGCTTATCTTTCTA 59.820 37.037 0.00 0.00 27.32 2.10
3022 3385 6.374417 ACTCACTTGGGCTTATCTTTCTAA 57.626 37.500 0.00 0.00 0.00 2.10
3024 3387 6.825721 ACTCACTTGGGCTTATCTTTCTAATG 59.174 38.462 0.00 0.00 0.00 1.90
3278 3641 3.132925 CCTTTGTTTGGATGTTTGCCTG 58.867 45.455 0.00 0.00 0.00 4.85
3279 3642 3.432046 CCTTTGTTTGGATGTTTGCCTGT 60.432 43.478 0.00 0.00 0.00 4.00
3280 3643 3.902881 TTGTTTGGATGTTTGCCTGTT 57.097 38.095 0.00 0.00 0.00 3.16
3281 3644 3.902881 TGTTTGGATGTTTGCCTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
3322 3685 2.930950 TGTCCCTTTGTCTGTTTCCTG 58.069 47.619 0.00 0.00 0.00 3.86
3440 3805 4.926140 TCAGTCTCGTATGCTTGATCAT 57.074 40.909 0.00 0.00 0.00 2.45
3630 3995 1.926426 CTCCCCCACCCAATCTCACC 61.926 65.000 0.00 0.00 0.00 4.02
3741 4436 3.245479 TGACTACACAGGGTATCACTCCA 60.245 47.826 0.00 0.00 0.00 3.86
3825 4520 7.174253 TGAAATCATTATAGGAATGGCGGTTAC 59.826 37.037 0.00 0.00 0.00 2.50
3935 4630 5.705905 GGGTGCTGGACAACTTATATATTCC 59.294 44.000 0.77 0.00 35.72 3.01
4134 4829 7.425606 AGTAGTTAACAAAGTGCCTGATTTTG 58.574 34.615 8.61 0.00 37.31 2.44
4212 4907 6.916932 GGCTTGGTCTTCTAGTAAATACTACG 59.083 42.308 0.00 0.00 37.73 3.51
4317 5014 5.804473 TGCGTGAATTTATTTTGGCTGTATG 59.196 36.000 0.00 0.00 0.00 2.39
4325 5022 6.842437 TTATTTTGGCTGTATGCTGGTTTA 57.158 33.333 0.00 0.00 42.39 2.01
4353 5050 5.586643 TGCATATGTTTTGCCGTGTTATCTA 59.413 36.000 4.29 0.00 39.39 1.98
4740 5473 4.122046 TGATGCTCAAACGGATGTATCTG 58.878 43.478 0.00 0.00 39.11 2.90
4746 5479 2.604046 AACGGATGTATCTGGCACTC 57.396 50.000 5.74 0.00 37.50 3.51
4762 5495 6.552725 TCTGGCACTCAAATCTAGATACATCT 59.447 38.462 5.46 0.00 40.86 2.90
4945 6098 2.783609 GGTACCTTCTGACCCCTTTC 57.216 55.000 4.06 0.00 0.00 2.62
5026 6179 7.893302 TCATTTGGTTGAATTAAGTAGGGTCAT 59.107 33.333 0.00 0.00 0.00 3.06
5060 6213 5.750352 AGAACAATCATTTTGCATCCCTT 57.250 34.783 0.00 0.00 0.00 3.95
5226 6895 3.279434 GTTGTGGTGACTCAGTTCCTTT 58.721 45.455 2.39 0.00 34.92 3.11
5322 6991 9.567848 GACTCTTCTCTTTACAGTTAGATTCAG 57.432 37.037 0.00 0.00 0.00 3.02
5467 7136 2.505407 TCGGGAATGAACCTGACATCAT 59.495 45.455 0.00 0.00 40.00 2.45
5642 7325 7.523293 TGGATTTCTCATAGTTGCTCAAAAA 57.477 32.000 0.00 0.00 0.00 1.94
5648 7331 5.177511 TCTCATAGTTGCTCAAAAAGTCACG 59.822 40.000 0.00 0.00 0.00 4.35
5656 7339 1.066303 TCAAAAAGTCACGCGCCAATT 59.934 42.857 5.73 0.00 0.00 2.32
5665 7348 2.287644 TCACGCGCCAATTCTTGATATG 59.712 45.455 5.73 0.00 0.00 1.78
5758 7441 9.788960 CAGCTTCAAATTCCTACCTTAAATTAC 57.211 33.333 0.00 0.00 0.00 1.89
5828 7511 9.520515 TCTAATCTAATTCCTAAATTGCCCATC 57.479 33.333 0.00 0.00 35.84 3.51
5829 7512 9.300681 CTAATCTAATTCCTAAATTGCCCATCA 57.699 33.333 0.00 0.00 35.84 3.07
5830 7513 6.959639 TCTAATTCCTAAATTGCCCATCAC 57.040 37.500 0.00 0.00 35.84 3.06
5831 7514 6.430864 TCTAATTCCTAAATTGCCCATCACA 58.569 36.000 0.00 0.00 35.84 3.58
6158 7951 8.412608 AGAATCTACATGTATTTCTGAACGTG 57.587 34.615 21.50 3.23 38.35 4.49
6165 7958 4.878439 TGTATTTCTGAACGTGCACTACT 58.122 39.130 16.19 0.00 0.00 2.57
6174 7967 3.489180 ACGTGCACTACTCATGTCTAC 57.511 47.619 16.19 0.00 0.00 2.59
6222 8015 5.578336 GCTAAATGGGAAAAGACAATTCAGC 59.422 40.000 0.00 0.00 0.00 4.26
6234 8027 2.634453 ACAATTCAGCAGGAAAAAGGGG 59.366 45.455 0.00 0.00 39.39 4.79
6337 8130 5.310857 AGAGGGGGCTTGAATACTTTATAGG 59.689 44.000 0.00 0.00 0.00 2.57
6382 8179 2.702847 GATTTGGTCCCCCGAATCG 58.297 57.895 6.06 0.00 46.73 3.34
6528 8325 4.122776 ACAGATTCATCCGAATTTCTCCG 58.877 43.478 0.00 0.00 42.06 4.63
6549 8346 3.548014 CGTTTGCAAACCGACTCTCATTT 60.548 43.478 31.14 0.00 35.51 2.32
6803 8600 8.470002 GTGTTAGGAAAATTTGAAGGCATCTAT 58.530 33.333 0.00 0.00 0.00 1.98
6818 8615 9.508567 GAAGGCATCTATTAATTTGTTGTCTTC 57.491 33.333 19.20 19.20 36.03 2.87
6865 8662 3.181470 TGTGTATATGATGGTGGTGACGG 60.181 47.826 0.00 0.00 0.00 4.79
7002 8799 2.947652 CCTTTGGAGGTATGTCTGCATG 59.052 50.000 0.00 0.00 38.32 4.06
7079 8880 9.252962 ACTTCTTTATTTCTTCAGCACATTTTG 57.747 29.630 0.00 0.00 0.00 2.44
7328 9159 8.160765 TCCATTTAAGGTATTTGTCTTGTCAGA 58.839 33.333 0.00 0.00 0.00 3.27
7340 9171 5.610398 TGTCTTGTCAGATGTAAGCTTTGA 58.390 37.500 3.20 0.00 0.00 2.69
7350 9181 7.964559 TCAGATGTAAGCTTTGAAATTTCATCG 59.035 33.333 21.10 15.31 37.00 3.84
7360 9191 6.951062 TTGAAATTTCATCGTATGGGCATA 57.049 33.333 21.10 0.00 37.00 3.14
7411 9242 0.034767 CTCCTCAAGGATGGCTGCAA 60.035 55.000 0.50 0.00 44.46 4.08
7461 9292 0.736053 TTTTCGTGACCACACAAGGC 59.264 50.000 0.00 0.00 46.20 4.35
7584 9415 7.649533 TGATAATCCACGTATCGGGTAATAT 57.350 36.000 0.00 0.00 31.69 1.28
7637 9468 3.447586 AGAGCCTAAGCATTTACGACTCA 59.552 43.478 0.00 0.00 43.56 3.41
7641 9472 5.928839 AGCCTAAGCATTTACGACTCATATG 59.071 40.000 0.00 0.00 43.56 1.78
7654 9485 4.680567 CGACTCATATGCTTCATCTCTGTG 59.319 45.833 0.00 0.00 0.00 3.66
7656 9487 3.736720 TCATATGCTTCATCTCTGTGGC 58.263 45.455 0.00 0.00 0.00 5.01
7675 9507 2.436417 GCCTTTAGTCATGCCTTGTCA 58.564 47.619 0.00 0.00 0.00 3.58
7873 9708 4.871933 TCAGCATCTCAGTGAACTAACA 57.128 40.909 0.00 0.00 0.00 2.41
7941 9776 1.523758 GGTGGCGATTCAACTTCACT 58.476 50.000 0.00 0.00 0.00 3.41
7955 9790 2.816087 ACTTCACTTGCAAGCATACCTG 59.184 45.455 26.27 15.39 0.00 4.00
7956 9791 2.857186 TCACTTGCAAGCATACCTGA 57.143 45.000 26.27 17.43 0.00 3.86
7957 9792 2.426522 TCACTTGCAAGCATACCTGAC 58.573 47.619 26.27 0.00 0.00 3.51
7958 9793 2.153645 CACTTGCAAGCATACCTGACA 58.846 47.619 26.27 0.00 0.00 3.58
8032 9872 5.701224 CCTCAGATTCCCTAGTCTTAGACT 58.299 45.833 19.35 19.35 45.54 3.24
8054 9894 3.981071 TCTTGCTGCTAACCATACAGT 57.019 42.857 0.00 0.00 33.87 3.55
8060 9900 5.739959 TGCTGCTAACCATACAGTGATTAA 58.260 37.500 0.00 0.00 33.87 1.40
8264 10104 3.896888 AGAAATGGGCATTGTTTCTGTCA 59.103 39.130 0.00 0.00 39.85 3.58
8272 10112 4.616802 GGCATTGTTTCTGTCATGTTTACG 59.383 41.667 0.00 0.00 0.00 3.18
8354 10197 2.793278 ATGGAGCAAACGTTGGAAAC 57.207 45.000 6.92 0.00 45.31 2.78
8365 10208 0.675633 GTTGGAAACTGCATGGTGCT 59.324 50.000 3.41 0.00 45.32 4.40
8366 10209 1.885887 GTTGGAAACTGCATGGTGCTA 59.114 47.619 3.41 0.00 45.32 3.49
8367 10210 2.493278 GTTGGAAACTGCATGGTGCTAT 59.507 45.455 3.41 0.00 45.32 2.97
8384 10227 6.094048 TGGTGCTATTACTTGATTCTTGCTTC 59.906 38.462 0.00 0.00 0.00 3.86
8439 10282 0.250234 TAGTACTTGCCTGCCTGCTG 59.750 55.000 0.00 0.00 0.00 4.41
8440 10283 2.360350 TACTTGCCTGCCTGCTGC 60.360 61.111 0.00 0.00 41.77 5.25
8441 10284 2.898933 TACTTGCCTGCCTGCTGCT 61.899 57.895 0.00 0.00 42.00 4.24
8462 10305 0.700564 ACTGCATCCACCCATCAACT 59.299 50.000 0.00 0.00 0.00 3.16
8482 10333 1.456296 TGGTGCATGATCAGTTGAGC 58.544 50.000 0.09 0.92 0.00 4.26
8502 10356 3.636764 AGCAGGTAAACCCTTGTTTTCTG 59.363 43.478 12.61 12.61 42.73 3.02
8573 10431 3.441101 AGTACTCCATTGTGCTGTAGGA 58.559 45.455 0.00 0.00 31.90 2.94
8578 10436 1.645034 CATTGTGCTGTAGGACCGAG 58.355 55.000 1.00 0.00 35.36 4.63
8591 10449 1.363744 GACCGAGCATTCAAGTCTGG 58.636 55.000 0.00 0.00 0.00 3.86
8592 10450 0.674895 ACCGAGCATTCAAGTCTGGC 60.675 55.000 0.00 0.00 0.00 4.85
8593 10451 0.674581 CCGAGCATTCAAGTCTGGCA 60.675 55.000 0.00 0.00 0.00 4.92
8634 10492 2.676839 AGCTTTGATCTCTGAATGTGCG 59.323 45.455 0.00 0.00 0.00 5.34
8635 10493 2.674852 GCTTTGATCTCTGAATGTGCGA 59.325 45.455 0.00 0.00 0.00 5.10
8636 10494 3.125829 GCTTTGATCTCTGAATGTGCGAA 59.874 43.478 0.00 0.00 0.00 4.70
8637 10495 4.378770 GCTTTGATCTCTGAATGTGCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
8638 10496 4.668576 TTGATCTCTGAATGTGCGAAAC 57.331 40.909 0.00 0.00 0.00 2.78
8639 10497 3.930336 TGATCTCTGAATGTGCGAAACT 58.070 40.909 0.00 0.00 0.00 2.66
8640 10498 3.681417 TGATCTCTGAATGTGCGAAACTG 59.319 43.478 0.00 0.00 0.00 3.16
8641 10499 1.800586 TCTCTGAATGTGCGAAACTGC 59.199 47.619 0.00 0.00 0.00 4.40
8642 10500 1.802960 CTCTGAATGTGCGAAACTGCT 59.197 47.619 0.00 0.00 35.36 4.24
8643 10501 1.532437 TCTGAATGTGCGAAACTGCTG 59.468 47.619 0.00 0.00 35.36 4.41
8644 10502 1.265095 CTGAATGTGCGAAACTGCTGT 59.735 47.619 0.00 0.00 35.36 4.40
8645 10503 1.002576 TGAATGTGCGAAACTGCTGTG 60.003 47.619 0.00 0.00 35.36 3.66
8646 10504 1.002468 GAATGTGCGAAACTGCTGTGT 60.002 47.619 0.00 0.00 35.36 3.72
8647 10505 0.308684 ATGTGCGAAACTGCTGTGTG 59.691 50.000 0.00 0.00 35.36 3.82
8648 10506 1.009675 GTGCGAAACTGCTGTGTGG 60.010 57.895 0.00 0.00 35.36 4.17
8649 10507 1.153269 TGCGAAACTGCTGTGTGGA 60.153 52.632 0.00 0.00 35.36 4.02
8650 10508 1.279840 GCGAAACTGCTGTGTGGAC 59.720 57.895 0.00 0.00 0.00 4.02
8651 10509 1.564622 CGAAACTGCTGTGTGGACG 59.435 57.895 0.00 0.00 0.00 4.79
8652 10510 0.874175 CGAAACTGCTGTGTGGACGA 60.874 55.000 0.00 0.00 0.00 4.20
8653 10511 0.582005 GAAACTGCTGTGTGGACGAC 59.418 55.000 0.00 0.00 0.00 4.34
8654 10512 0.107897 AAACTGCTGTGTGGACGACA 60.108 50.000 0.00 0.00 0.00 4.35
8655 10513 0.107897 AACTGCTGTGTGGACGACAA 60.108 50.000 0.00 0.00 35.91 3.18
8656 10514 0.106708 ACTGCTGTGTGGACGACAAT 59.893 50.000 0.00 0.00 35.91 2.71
8657 10515 1.343142 ACTGCTGTGTGGACGACAATA 59.657 47.619 0.00 0.00 35.91 1.90
8658 10516 1.995484 CTGCTGTGTGGACGACAATAG 59.005 52.381 0.00 0.00 35.91 1.73
8659 10517 0.721718 GCTGTGTGGACGACAATAGC 59.278 55.000 10.75 10.75 38.88 2.97
8660 10518 1.939381 GCTGTGTGGACGACAATAGCA 60.939 52.381 17.51 2.12 42.51 3.49
8661 10519 1.995484 CTGTGTGGACGACAATAGCAG 59.005 52.381 0.00 0.00 35.91 4.24
8662 10520 1.337728 TGTGTGGACGACAATAGCAGG 60.338 52.381 0.00 0.00 35.91 4.85
8663 10521 1.067142 GTGTGGACGACAATAGCAGGA 60.067 52.381 0.00 0.00 35.91 3.86
8664 10522 1.067142 TGTGGACGACAATAGCAGGAC 60.067 52.381 0.00 0.00 0.00 3.85
8665 10523 0.172578 TGGACGACAATAGCAGGACG 59.827 55.000 0.00 0.00 0.00 4.79
8666 10524 0.454600 GGACGACAATAGCAGGACGA 59.545 55.000 0.00 0.00 0.00 4.20
8667 10525 1.135199 GGACGACAATAGCAGGACGAA 60.135 52.381 0.00 0.00 0.00 3.85
8668 10526 1.918609 GACGACAATAGCAGGACGAAC 59.081 52.381 0.00 0.00 0.00 3.95
8669 10527 1.544691 ACGACAATAGCAGGACGAACT 59.455 47.619 0.00 0.00 0.00 3.01
8670 10528 1.920574 CGACAATAGCAGGACGAACTG 59.079 52.381 6.73 6.73 41.41 3.16
8676 10534 3.767230 CAGGACGAACTGCGCACG 61.767 66.667 16.21 16.21 46.04 5.34
8677 10535 3.973516 AGGACGAACTGCGCACGA 61.974 61.111 23.36 0.00 46.04 4.35
8678 10536 2.809601 GGACGAACTGCGCACGAT 60.810 61.111 23.36 7.53 46.04 3.73
8679 10537 2.391821 GACGAACTGCGCACGATG 59.608 61.111 23.36 9.31 46.04 3.84
8680 10538 3.071459 GACGAACTGCGCACGATGG 62.071 63.158 23.36 8.92 46.04 3.51
8681 10539 2.809174 CGAACTGCGCACGATGGA 60.809 61.111 5.66 0.00 0.00 3.41
8682 10540 2.792290 CGAACTGCGCACGATGGAG 61.792 63.158 5.66 0.00 0.00 3.86
8683 10541 1.738099 GAACTGCGCACGATGGAGT 60.738 57.895 5.66 0.00 39.92 3.85
8684 10542 0.457853 GAACTGCGCACGATGGAGTA 60.458 55.000 5.66 0.00 36.98 2.59
8685 10543 0.175760 AACTGCGCACGATGGAGTAT 59.824 50.000 5.66 0.00 36.98 2.12
8686 10544 0.175760 ACTGCGCACGATGGAGTATT 59.824 50.000 5.66 0.00 36.15 1.89
8687 10545 1.290203 CTGCGCACGATGGAGTATTT 58.710 50.000 5.66 0.00 0.00 1.40
8688 10546 2.159156 ACTGCGCACGATGGAGTATTTA 60.159 45.455 5.66 0.00 36.15 1.40
8689 10547 2.863740 CTGCGCACGATGGAGTATTTAA 59.136 45.455 5.66 0.00 0.00 1.52
8690 10548 2.605818 TGCGCACGATGGAGTATTTAAC 59.394 45.455 5.66 0.00 0.00 2.01
8691 10549 2.347292 GCGCACGATGGAGTATTTAACG 60.347 50.000 0.30 0.00 0.00 3.18
8692 10550 2.217847 CGCACGATGGAGTATTTAACGG 59.782 50.000 0.00 0.00 0.00 4.44
8693 10551 3.192466 GCACGATGGAGTATTTAACGGT 58.808 45.455 0.00 0.00 0.00 4.83
8694 10552 3.000925 GCACGATGGAGTATTTAACGGTG 59.999 47.826 0.00 0.00 0.00 4.94
8695 10553 4.178540 CACGATGGAGTATTTAACGGTGT 58.821 43.478 0.00 0.00 0.00 4.16
8696 10554 5.342433 CACGATGGAGTATTTAACGGTGTA 58.658 41.667 0.00 0.00 0.00 2.90
8697 10555 5.457799 CACGATGGAGTATTTAACGGTGTAG 59.542 44.000 0.00 0.00 0.00 2.74
8698 10556 4.980434 CGATGGAGTATTTAACGGTGTAGG 59.020 45.833 0.00 0.00 0.00 3.18
8699 10557 5.450965 CGATGGAGTATTTAACGGTGTAGGT 60.451 44.000 0.00 0.00 0.00 3.08
8700 10558 5.743636 TGGAGTATTTAACGGTGTAGGTT 57.256 39.130 0.00 0.00 0.00 3.50
8701 10559 5.723295 TGGAGTATTTAACGGTGTAGGTTC 58.277 41.667 0.00 0.00 0.00 3.62
8702 10560 5.245751 TGGAGTATTTAACGGTGTAGGTTCA 59.754 40.000 0.00 0.00 0.00 3.18
8703 10561 5.578336 GGAGTATTTAACGGTGTAGGTTCAC 59.422 44.000 0.00 0.00 37.57 3.18
8704 10562 6.350629 AGTATTTAACGGTGTAGGTTCACT 57.649 37.500 0.00 0.00 38.28 3.41
8705 10563 6.762333 AGTATTTAACGGTGTAGGTTCACTT 58.238 36.000 0.00 0.00 38.28 3.16
8706 10564 7.219322 AGTATTTAACGGTGTAGGTTCACTTT 58.781 34.615 0.00 0.00 38.28 2.66
8707 10565 5.738118 TTTAACGGTGTAGGTTCACTTTG 57.262 39.130 0.00 0.00 38.28 2.77
8708 10566 3.547054 AACGGTGTAGGTTCACTTTGA 57.453 42.857 0.00 0.00 38.28 2.69
8709 10567 3.547054 ACGGTGTAGGTTCACTTTGAA 57.453 42.857 0.00 0.00 38.28 2.69
8710 10568 4.081322 ACGGTGTAGGTTCACTTTGAAT 57.919 40.909 0.00 0.00 38.79 2.57
8711 10569 4.062991 ACGGTGTAGGTTCACTTTGAATC 58.937 43.478 0.00 0.00 38.79 2.52
8712 10570 3.122948 CGGTGTAGGTTCACTTTGAATCG 59.877 47.826 0.00 0.00 42.12 3.34
8713 10571 4.312443 GGTGTAGGTTCACTTTGAATCGA 58.688 43.478 0.00 0.00 42.12 3.59
8714 10572 4.151867 GGTGTAGGTTCACTTTGAATCGAC 59.848 45.833 5.70 5.70 42.12 4.20
8715 10573 3.985279 TGTAGGTTCACTTTGAATCGACG 59.015 43.478 7.60 0.00 43.20 5.12
8716 10574 1.798813 AGGTTCACTTTGAATCGACGC 59.201 47.619 0.00 0.00 42.12 5.19
8717 10575 1.529438 GGTTCACTTTGAATCGACGCA 59.471 47.619 0.00 0.00 38.79 5.24
8718 10576 2.159627 GGTTCACTTTGAATCGACGCAT 59.840 45.455 0.00 0.00 38.79 4.73
8719 10577 3.155998 GTTCACTTTGAATCGACGCATG 58.844 45.455 0.00 0.00 38.79 4.06
8720 10578 1.731709 TCACTTTGAATCGACGCATGG 59.268 47.619 0.00 0.00 0.00 3.66
8721 10579 1.731709 CACTTTGAATCGACGCATGGA 59.268 47.619 0.00 0.00 0.00 3.41
8722 10580 1.732259 ACTTTGAATCGACGCATGGAC 59.268 47.619 0.00 0.00 0.00 4.02
8723 10581 0.718904 TTTGAATCGACGCATGGACG 59.281 50.000 0.00 0.00 39.50 4.79
8724 10582 1.081556 TTGAATCGACGCATGGACGG 61.082 55.000 0.00 0.00 37.37 4.79
8725 10583 1.226859 GAATCGACGCATGGACGGA 60.227 57.895 0.00 0.00 37.37 4.69
8726 10584 0.597637 GAATCGACGCATGGACGGAT 60.598 55.000 0.00 0.00 37.37 4.18
8727 10585 0.179084 AATCGACGCATGGACGGATT 60.179 50.000 0.00 0.00 37.37 3.01
8728 10586 0.875908 ATCGACGCATGGACGGATTG 60.876 55.000 0.00 0.00 37.37 2.67
8729 10587 1.518352 CGACGCATGGACGGATTGA 60.518 57.895 0.00 0.00 37.37 2.57
8730 10588 0.875908 CGACGCATGGACGGATTGAT 60.876 55.000 0.00 0.00 37.37 2.57
8731 10589 0.583438 GACGCATGGACGGATTGATG 59.417 55.000 0.00 0.00 37.37 3.07
8732 10590 0.107703 ACGCATGGACGGATTGATGT 60.108 50.000 0.00 0.00 37.37 3.06
8733 10591 0.305617 CGCATGGACGGATTGATGTG 59.694 55.000 0.00 0.00 0.00 3.21
8734 10592 0.029834 GCATGGACGGATTGATGTGC 59.970 55.000 0.00 0.00 0.00 4.57
8735 10593 1.671979 CATGGACGGATTGATGTGCT 58.328 50.000 0.00 0.00 0.00 4.40
8736 10594 2.019249 CATGGACGGATTGATGTGCTT 58.981 47.619 0.00 0.00 0.00 3.91
8737 10595 1.737838 TGGACGGATTGATGTGCTTC 58.262 50.000 0.00 0.00 0.00 3.86
8738 10596 1.003003 TGGACGGATTGATGTGCTTCA 59.997 47.619 0.00 0.00 0.00 3.02
8739 10597 2.292267 GGACGGATTGATGTGCTTCAT 58.708 47.619 0.00 0.00 39.77 2.57
8745 10603 4.961622 GATGTGCTTCATCGTGCG 57.038 55.556 6.68 0.00 42.57 5.34
8746 10604 1.349627 GATGTGCTTCATCGTGCGG 59.650 57.895 6.68 0.00 42.57 5.69
8747 10605 1.079197 ATGTGCTTCATCGTGCGGA 60.079 52.632 0.00 0.00 29.76 5.54
8748 10606 1.086067 ATGTGCTTCATCGTGCGGAG 61.086 55.000 0.00 0.00 29.76 4.63
8749 10607 1.446099 GTGCTTCATCGTGCGGAGA 60.446 57.895 0.00 0.00 0.00 3.71
8750 10608 0.807667 GTGCTTCATCGTGCGGAGAT 60.808 55.000 0.00 0.00 0.00 2.75
8751 10609 0.528466 TGCTTCATCGTGCGGAGATC 60.528 55.000 0.00 0.00 0.00 2.75
8752 10610 1.543941 GCTTCATCGTGCGGAGATCG 61.544 60.000 0.00 0.00 42.76 3.69
8753 10611 0.248661 CTTCATCGTGCGGAGATCGT 60.249 55.000 0.00 0.00 41.72 3.73
8754 10612 0.248498 TTCATCGTGCGGAGATCGTC 60.248 55.000 0.00 0.00 41.72 4.20
8755 10613 1.658717 CATCGTGCGGAGATCGTCC 60.659 63.158 2.13 2.13 42.85 4.79
8762 10620 4.496670 GGAGATCGTCCACAACCG 57.503 61.111 6.39 0.00 46.10 4.44
8763 10621 1.590147 GGAGATCGTCCACAACCGT 59.410 57.895 6.39 0.00 46.10 4.83
8764 10622 0.458025 GGAGATCGTCCACAACCGTC 60.458 60.000 6.39 0.00 46.10 4.79
8765 10623 0.797249 GAGATCGTCCACAACCGTCG 60.797 60.000 0.00 0.00 0.00 5.12
8766 10624 1.080974 GATCGTCCACAACCGTCGT 60.081 57.895 0.00 0.00 0.00 4.34
8767 10625 1.342082 GATCGTCCACAACCGTCGTG 61.342 60.000 0.00 0.00 0.00 4.35
8768 10626 2.079020 ATCGTCCACAACCGTCGTGT 62.079 55.000 0.00 0.00 32.26 4.49
8769 10627 2.582265 CGTCCACAACCGTCGTGTG 61.582 63.158 8.59 8.59 44.90 3.82
8770 10628 1.519898 GTCCACAACCGTCGTGTGT 60.520 57.895 13.13 4.16 44.00 3.72
8771 10629 1.519676 TCCACAACCGTCGTGTGTG 60.520 57.895 15.18 15.18 44.00 3.82
8772 10630 1.812093 CCACAACCGTCGTGTGTGT 60.812 57.895 18.69 9.00 44.00 3.72
8773 10631 0.528033 CCACAACCGTCGTGTGTGTA 60.528 55.000 18.69 0.00 44.00 2.90
8774 10632 0.850217 CACAACCGTCGTGTGTGTAG 59.150 55.000 14.31 0.00 41.22 2.74
8775 10633 0.872881 ACAACCGTCGTGTGTGTAGC 60.873 55.000 0.00 0.00 0.00 3.58
8776 10634 0.872451 CAACCGTCGTGTGTGTAGCA 60.872 55.000 0.00 0.00 0.00 3.49
8777 10635 0.596600 AACCGTCGTGTGTGTAGCAG 60.597 55.000 0.00 0.00 0.00 4.24
8778 10636 2.372690 CCGTCGTGTGTGTAGCAGC 61.373 63.158 0.00 0.00 0.00 5.25
8779 10637 1.660264 CGTCGTGTGTGTAGCAGCA 60.660 57.895 0.00 0.00 0.00 4.41
8780 10638 1.853319 GTCGTGTGTGTAGCAGCAC 59.147 57.895 0.00 4.04 39.65 4.40
8781 10639 0.597637 GTCGTGTGTGTAGCAGCACT 60.598 55.000 11.09 0.00 39.89 4.40
8782 10640 0.318699 TCGTGTGTGTAGCAGCACTC 60.319 55.000 11.09 8.46 39.89 3.51
8783 10641 0.597377 CGTGTGTGTAGCAGCACTCA 60.597 55.000 11.09 10.57 39.55 3.41
8784 10642 1.800805 GTGTGTGTAGCAGCACTCAT 58.199 50.000 15.02 0.00 42.34 2.90
8785 10643 1.462283 GTGTGTGTAGCAGCACTCATG 59.538 52.381 15.02 0.00 42.34 3.07
8786 10644 1.344114 TGTGTGTAGCAGCACTCATGA 59.656 47.619 11.09 0.00 37.76 3.07
8787 10645 2.224257 TGTGTGTAGCAGCACTCATGAA 60.224 45.455 11.09 0.00 37.76 2.57
8788 10646 3.005554 GTGTGTAGCAGCACTCATGAAT 58.994 45.455 11.09 0.00 39.89 2.57
8789 10647 3.004862 TGTGTAGCAGCACTCATGAATG 58.995 45.455 0.00 0.00 39.89 2.67
8790 10648 3.005554 GTGTAGCAGCACTCATGAATGT 58.994 45.455 5.98 0.00 36.51 2.71
8791 10649 3.004862 TGTAGCAGCACTCATGAATGTG 58.995 45.455 5.98 8.27 37.26 3.21
8847 10716 0.121197 TGGGAATCTGGGGAAGGAGT 59.879 55.000 0.00 0.00 0.00 3.85
8848 10717 0.840617 GGGAATCTGGGGAAGGAGTC 59.159 60.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 164 1.826921 GCTCGTCCGGGATAGGTGA 60.827 63.158 0.00 0.00 0.00 4.02
662 931 4.467084 GGGCACGGCGATCTCCAA 62.467 66.667 16.62 0.00 0.00 3.53
675 944 2.291043 GGAGGAAAGAGACGGGGCA 61.291 63.158 0.00 0.00 0.00 5.36
699 968 2.032924 GTCAAACCTCAAACGGAACCAG 59.967 50.000 0.00 0.00 0.00 4.00
912 1213 3.470888 AATGGAGGCGGACGGGAG 61.471 66.667 0.00 0.00 0.00 4.30
913 1214 3.781307 CAATGGAGGCGGACGGGA 61.781 66.667 0.00 0.00 0.00 5.14
921 1222 4.005472 CGATCGCGCAATGGAGGC 62.005 66.667 8.75 0.00 0.00 4.70
948 1249 1.146263 CTAGGTTTAGGGCTGGCCG 59.854 63.158 15.17 0.00 36.85 6.13
1129 1457 4.400251 CTCCTGGGACCCCCTCGT 62.400 72.222 8.45 0.00 45.70 4.18
1331 1671 3.851128 GGTAGACGGAGCCTGGCC 61.851 72.222 16.57 6.85 0.00 5.36
1380 1720 1.374252 GTTGTCGGCGTCCATGTCT 60.374 57.895 6.85 0.00 0.00 3.41
1420 1760 0.255890 GGAGGCACTGATTAAGGCCA 59.744 55.000 5.01 0.00 41.55 5.36
1422 1762 1.488393 AGAGGAGGCACTGATTAAGGC 59.512 52.381 0.00 0.00 41.55 4.35
1424 1764 3.037549 AGGAGAGGAGGCACTGATTAAG 58.962 50.000 0.00 0.00 41.55 1.85
1425 1765 3.034635 GAGGAGAGGAGGCACTGATTAA 58.965 50.000 0.00 0.00 41.55 1.40
1426 1766 2.672098 GAGGAGAGGAGGCACTGATTA 58.328 52.381 0.00 0.00 41.55 1.75
1427 1767 1.494960 GAGGAGAGGAGGCACTGATT 58.505 55.000 0.00 0.00 41.55 2.57
1428 1768 0.754957 CGAGGAGAGGAGGCACTGAT 60.755 60.000 0.00 0.00 41.55 2.90
1429 1769 1.379176 CGAGGAGAGGAGGCACTGA 60.379 63.158 0.00 0.00 41.55 3.41
1430 1770 1.254284 AACGAGGAGAGGAGGCACTG 61.254 60.000 0.00 0.00 41.55 3.66
1432 1772 1.216710 CAACGAGGAGAGGAGGCAC 59.783 63.158 0.00 0.00 0.00 5.01
1433 1773 2.650116 GCAACGAGGAGAGGAGGCA 61.650 63.158 0.00 0.00 0.00 4.75
1434 1774 2.185608 GCAACGAGGAGAGGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
1435 1775 2.726351 GGGCAACGAGGAGAGGAGG 61.726 68.421 0.00 0.00 37.60 4.30
1774 2129 3.803082 CATCCACGGGCTGCAACG 61.803 66.667 13.20 13.20 0.00 4.10
1854 2209 3.699038 GTCAAGCAGGAGTGACTAGATCT 59.301 47.826 0.00 0.00 40.82 2.75
1865 2220 1.270732 ACTCAAGCAGTCAAGCAGGAG 60.271 52.381 0.00 0.00 40.52 3.69
1975 2330 2.992124 TTCGTCCTCCTGTCAAACAA 57.008 45.000 0.00 0.00 0.00 2.83
2096 2453 7.262772 CAAGACAATTATGTGGATGAAGCAAT 58.737 34.615 0.00 0.00 40.74 3.56
2164 2525 6.322201 ACAAAAACATGACAAGGTGAGAGAAT 59.678 34.615 0.00 0.00 0.00 2.40
2388 2750 3.259625 AGAAAGCAGGTCTTCTCTACCAC 59.740 47.826 0.00 0.00 39.64 4.16
2476 2838 2.878406 ACAAGAAGATGAAACGGTGGTG 59.122 45.455 0.00 0.00 0.00 4.17
2488 2850 7.951530 ATTCGCATTTGAAAAACAAGAAGAT 57.048 28.000 0.00 0.00 39.77 2.40
2574 2936 1.068610 GCATGCTGGTAAGTTTTCGCA 60.069 47.619 11.37 0.00 0.00 5.10
2674 3037 9.506018 TGAACAACTAATCTTCATGATTCTCAA 57.494 29.630 0.00 0.00 43.69 3.02
2675 3038 9.676861 ATGAACAACTAATCTTCATGATTCTCA 57.323 29.630 0.00 0.00 43.69 3.27
2677 3040 9.676861 TGATGAACAACTAATCTTCATGATTCT 57.323 29.630 0.00 0.00 43.69 2.40
2694 3057 7.502226 AGAAAAGTGTATCAGGTTGATGAACAA 59.498 33.333 0.00 0.00 37.70 2.83
2695 3058 6.998074 AGAAAAGTGTATCAGGTTGATGAACA 59.002 34.615 0.00 0.00 37.70 3.18
2748 3111 6.261381 TGAATTCTGTAAAACTAACACGCCTT 59.739 34.615 7.05 0.00 0.00 4.35
2765 3128 6.754702 AAGAAGACATCCATGTGAATTCTG 57.245 37.500 7.05 0.00 41.95 3.02
2928 3291 5.289675 GTCACATATGAAGAACCGTTGAGAG 59.710 44.000 10.38 0.00 36.31 3.20
3013 3376 9.764363 GGAAACAAGAAAAACCATTAGAAAGAT 57.236 29.630 0.00 0.00 0.00 2.40
3021 3384 7.603784 GCATATCTGGAAACAAGAAAAACCATT 59.396 33.333 0.00 0.00 42.06 3.16
3022 3385 7.099120 GCATATCTGGAAACAAGAAAAACCAT 58.901 34.615 0.00 0.00 42.06 3.55
3024 3387 6.454795 TGCATATCTGGAAACAAGAAAAACC 58.545 36.000 0.00 0.00 42.06 3.27
3207 3570 4.986659 ACACCGTTATCGAGCAATAATACC 59.013 41.667 0.00 0.00 39.71 2.73
3322 3685 8.395633 GGTACATATGACTGACAAAAATGGTAC 58.604 37.037 10.38 0.00 0.00 3.34
3440 3805 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
3630 3995 1.355720 ACAGAAGGAGAATTGGGGTGG 59.644 52.381 0.00 0.00 0.00 4.61
3741 4436 4.019411 CCCATATCAGTTTTGGCCCTTTTT 60.019 41.667 0.00 0.00 0.00 1.94
3935 4630 5.675575 GCACAGGCATCTATTCAACAAGAAG 60.676 44.000 0.00 0.00 38.81 2.85
3945 4640 3.434309 ACAAAAGGCACAGGCATCTATT 58.566 40.909 0.00 0.00 43.71 1.73
4002 4697 9.357652 CAGCAAGCATATTTGTGTTACTAAAAT 57.642 29.630 0.00 2.53 0.00 1.82
4011 4706 4.703575 AGACATCAGCAAGCATATTTGTGT 59.296 37.500 0.00 0.00 0.00 3.72
4134 4829 2.550606 TGTGACCAAAACGCTCCATTAC 59.449 45.455 0.00 0.00 0.00 1.89
4317 5014 7.307337 GGCAAAACATATGCATAATAAACCAGC 60.307 37.037 11.13 8.37 45.60 4.85
4325 5022 5.261209 ACACGGCAAAACATATGCATAAT 57.739 34.783 11.13 0.00 45.60 1.28
4353 5050 1.270147 GCGCGGGGTATCATCTAGTTT 60.270 52.381 8.83 0.00 0.00 2.66
4740 5473 6.520272 ACAGATGTATCTAGATTTGAGTGCC 58.480 40.000 11.25 0.00 34.85 5.01
4746 5479 7.223582 ACGCTCAAACAGATGTATCTAGATTTG 59.776 37.037 11.25 7.61 36.16 2.32
4762 5495 3.185594 CGGAATTAGTTGACGCTCAAACA 59.814 43.478 2.65 0.00 38.22 2.83
4979 6132 9.657419 AAATGAACAAAATTTCTGAAAGTGACT 57.343 25.926 8.95 0.00 33.76 3.41
4980 6133 9.693157 CAAATGAACAAAATTTCTGAAAGTGAC 57.307 29.630 8.95 7.30 33.76 3.67
5048 6201 4.584325 GCATATAGGTCAAGGGATGCAAAA 59.416 41.667 0.00 0.00 39.53 2.44
5060 6213 7.104043 ACGTTAACTAACTGCATATAGGTCA 57.896 36.000 3.71 0.00 34.12 4.02
5226 6895 3.826157 CTGGTTATGGCACCTTTGAAAGA 59.174 43.478 6.49 0.00 37.75 2.52
5490 7173 8.034804 AGTTCATCCCTTTAACACAAATAATGC 58.965 33.333 0.00 0.00 0.00 3.56
5642 7325 1.868997 CAAGAATTGGCGCGTGACT 59.131 52.632 8.43 0.00 43.94 3.41
5648 7331 8.943466 GTAGTCCTACATATCAAGAATTGGCGC 61.943 44.444 0.00 0.00 40.13 6.53
5656 7339 8.053355 TCAAGTCAGTAGTCCTACATATCAAGA 58.947 37.037 7.19 0.00 38.48 3.02
5665 7348 4.705507 TGTGGATCAAGTCAGTAGTCCTAC 59.294 45.833 0.00 0.00 36.35 3.18
5732 7415 9.788960 GTAATTTAAGGTAGGAATTTGAAGCTG 57.211 33.333 0.00 0.00 0.00 4.24
6141 7934 4.668576 AGTGCACGTTCAGAAATACATG 57.331 40.909 12.01 0.00 0.00 3.21
6155 7948 3.766676 AGTAGACATGAGTAGTGCACG 57.233 47.619 12.01 0.00 0.00 5.34
6158 7951 7.436673 CCTTGAAATAGTAGACATGAGTAGTGC 59.563 40.741 0.00 0.00 0.00 4.40
6174 7967 8.248945 AGCAGAATGAATTTCACCTTGAAATAG 58.751 33.333 13.20 2.18 46.44 1.73
6222 8015 4.344968 ACATTTGTCTTCCCCTTTTTCCTG 59.655 41.667 0.00 0.00 0.00 3.86
6234 8027 6.327934 AGCATGAATAGCAACATTTGTCTTC 58.672 36.000 0.00 0.00 0.00 2.87
6382 8179 4.091424 GTGCTACGATGCAATCAAACTTC 58.909 43.478 8.44 0.00 45.97 3.01
6456 8253 8.827677 AGGAACAGTCGCATAATAATAAAAGAC 58.172 33.333 0.00 0.00 0.00 3.01
6528 8325 3.626028 AATGAGAGTCGGTTTGCAAAC 57.374 42.857 30.09 30.09 38.17 2.93
6549 8346 0.539438 GAACAACAGGTGGGGCATCA 60.539 55.000 0.00 0.00 0.00 3.07
6793 8590 8.470002 GGAAGACAACAAATTAATAGATGCCTT 58.530 33.333 0.00 0.00 0.00 4.35
6865 8662 3.950395 CACATCCATTTCCTTCTTCTCCC 59.050 47.826 0.00 0.00 0.00 4.30
7002 8799 7.066284 AGTGGTGAGCATCTGTTTTCATATTAC 59.934 37.037 0.00 0.00 34.92 1.89
7079 8880 7.708322 CCCTAAACGGAAAATAGTCTTACTACC 59.292 40.741 0.00 0.00 31.18 3.18
7217 9048 2.224257 GGAGCCATGGTCTTCTCTGATC 60.224 54.545 14.67 0.00 0.00 2.92
7227 9058 1.556911 TCAAGAAGAGGAGCCATGGTC 59.443 52.381 14.67 9.55 0.00 4.02
7328 9159 9.507280 CATACGATGAAATTTCAAAGCTTACAT 57.493 29.630 23.91 4.96 41.13 2.29
7340 9171 6.772716 AGAACTATGCCCATACGATGAAATTT 59.227 34.615 0.00 0.00 0.00 1.82
7350 9181 5.813672 TGTCGTTTTAGAACTATGCCCATAC 59.186 40.000 0.00 0.00 33.51 2.39
7360 9191 5.270853 GCAACAATGTGTCGTTTTAGAACT 58.729 37.500 0.00 0.00 33.51 3.01
7411 9242 9.589461 ACTATAGGTGCAAACACTATAGTCTAT 57.411 33.333 22.76 7.00 46.57 1.98
7461 9292 5.643379 TCAGAAAATGAGGGAAATTTCCG 57.357 39.130 27.01 11.94 39.70 4.30
7584 9415 6.707273 AAATAAACTAAGGGTGGTCCAGTA 57.293 37.500 0.00 0.00 38.24 2.74
7637 9468 2.709934 AGGCCACAGAGATGAAGCATAT 59.290 45.455 5.01 0.00 0.00 1.78
7641 9472 1.831580 AAAGGCCACAGAGATGAAGC 58.168 50.000 5.01 0.00 0.00 3.86
7654 9485 1.745653 GACAAGGCATGACTAAAGGCC 59.254 52.381 0.00 0.00 46.77 5.19
7656 9487 5.649782 AAATGACAAGGCATGACTAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
7675 9507 8.070034 TCAATGACTTCCATCTGCATAAAAAT 57.930 30.769 0.00 0.00 33.53 1.82
7873 9708 0.178068 ACCGCGTGCCAGAGAAATAT 59.822 50.000 4.92 0.00 0.00 1.28
7941 9776 2.224499 TGTCTGTCAGGTATGCTTGCAA 60.224 45.455 0.00 0.00 0.00 4.08
7955 9790 2.902705 TGTACAACACCCTGTCTGTC 57.097 50.000 0.00 0.00 0.00 3.51
7956 9791 2.288825 CGATGTACAACACCCTGTCTGT 60.289 50.000 0.00 0.00 0.00 3.41
7957 9792 2.029380 TCGATGTACAACACCCTGTCTG 60.029 50.000 0.00 0.00 0.00 3.51
7958 9793 2.244695 TCGATGTACAACACCCTGTCT 58.755 47.619 0.00 0.00 0.00 3.41
8032 9872 5.128663 TCACTGTATGGTTAGCAGCAAGATA 59.871 40.000 0.00 0.00 33.01 1.98
8060 9900 7.914427 TGGATCTACTGGTATGTGTTAGATT 57.086 36.000 0.00 0.00 0.00 2.40
8230 10070 2.171448 GCCCATTTCTAGAGCAAGAGGA 59.829 50.000 0.00 0.00 0.00 3.71
8264 10104 2.440627 GGGATAAGACCCCCGTAAACAT 59.559 50.000 0.00 0.00 43.81 2.71
8365 10208 6.312918 GGTGACGAAGCAAGAATCAAGTAATA 59.687 38.462 0.00 0.00 0.00 0.98
8366 10209 5.122396 GGTGACGAAGCAAGAATCAAGTAAT 59.878 40.000 0.00 0.00 0.00 1.89
8367 10210 4.451096 GGTGACGAAGCAAGAATCAAGTAA 59.549 41.667 0.00 0.00 0.00 2.24
8439 10282 1.312815 GATGGGTGGATGCAGTAAGC 58.687 55.000 0.00 0.00 45.96 3.09
8440 10283 2.684881 GTTGATGGGTGGATGCAGTAAG 59.315 50.000 0.00 0.00 0.00 2.34
8441 10284 2.308570 AGTTGATGGGTGGATGCAGTAA 59.691 45.455 0.00 0.00 0.00 2.24
8453 10296 1.548081 TCATGCACCAAGTTGATGGG 58.452 50.000 3.87 0.00 45.18 4.00
8462 10305 1.814394 GCTCAACTGATCATGCACCAA 59.186 47.619 0.00 0.00 0.00 3.67
8482 10333 6.040247 GTTTCAGAAAACAAGGGTTTACCTG 58.960 40.000 0.00 12.46 46.20 4.00
8524 10382 7.783090 ACTCAGCATAGACAAACAAGATATG 57.217 36.000 0.00 0.00 0.00 1.78
8573 10431 0.674895 GCCAGACTTGAATGCTCGGT 60.675 55.000 0.00 0.00 0.00 4.69
8578 10436 0.170561 CTGCTGCCAGACTTGAATGC 59.829 55.000 0.00 0.00 41.77 3.56
8591 10449 2.967473 CTGCTGACACTGCTGCTGC 61.967 63.158 8.89 8.89 40.20 5.25
8592 10450 2.967473 GCTGCTGACACTGCTGCTG 61.967 63.158 18.79 4.89 44.71 4.41
8593 10451 2.668889 GCTGCTGACACTGCTGCT 60.669 61.111 18.79 0.00 44.71 4.24
8634 10492 0.582005 GTCGTCCACACAGCAGTTTC 59.418 55.000 0.00 0.00 0.00 2.78
8635 10493 0.107897 TGTCGTCCACACAGCAGTTT 60.108 50.000 0.00 0.00 0.00 2.66
8636 10494 0.107897 TTGTCGTCCACACAGCAGTT 60.108 50.000 0.00 0.00 33.41 3.16
8637 10495 0.106708 ATTGTCGTCCACACAGCAGT 59.893 50.000 0.00 0.00 33.41 4.40
8638 10496 1.995484 CTATTGTCGTCCACACAGCAG 59.005 52.381 0.00 0.00 33.41 4.24
8639 10497 1.939381 GCTATTGTCGTCCACACAGCA 60.939 52.381 0.00 0.00 40.71 4.41
8640 10498 0.721718 GCTATTGTCGTCCACACAGC 59.278 55.000 0.00 0.00 36.58 4.40
8641 10499 1.995484 CTGCTATTGTCGTCCACACAG 59.005 52.381 0.00 0.00 33.41 3.66
8642 10500 1.337728 CCTGCTATTGTCGTCCACACA 60.338 52.381 0.00 0.00 33.41 3.72
8643 10501 1.067142 TCCTGCTATTGTCGTCCACAC 60.067 52.381 0.00 0.00 33.41 3.82
8644 10502 1.067142 GTCCTGCTATTGTCGTCCACA 60.067 52.381 0.00 0.00 0.00 4.17
8645 10503 1.641577 GTCCTGCTATTGTCGTCCAC 58.358 55.000 0.00 0.00 0.00 4.02
8646 10504 0.172578 CGTCCTGCTATTGTCGTCCA 59.827 55.000 0.00 0.00 0.00 4.02
8647 10505 0.454600 TCGTCCTGCTATTGTCGTCC 59.545 55.000 0.00 0.00 0.00 4.79
8648 10506 1.918609 GTTCGTCCTGCTATTGTCGTC 59.081 52.381 0.00 0.00 0.00 4.20
8649 10507 1.544691 AGTTCGTCCTGCTATTGTCGT 59.455 47.619 0.00 0.00 0.00 4.34
8650 10508 1.920574 CAGTTCGTCCTGCTATTGTCG 59.079 52.381 0.00 0.00 0.00 4.35
8659 10517 3.767230 CGTGCGCAGTTCGTCCTG 61.767 66.667 12.22 0.60 41.07 3.86
8660 10518 3.282745 ATCGTGCGCAGTTCGTCCT 62.283 57.895 12.22 0.00 41.07 3.85
8661 10519 2.809601 ATCGTGCGCAGTTCGTCC 60.810 61.111 12.22 0.00 41.07 4.79
8662 10520 2.391821 CATCGTGCGCAGTTCGTC 59.608 61.111 12.22 0.00 41.07 4.20
8663 10521 3.112075 CCATCGTGCGCAGTTCGT 61.112 61.111 12.22 0.00 41.07 3.85
8664 10522 2.792290 CTCCATCGTGCGCAGTTCG 61.792 63.158 12.22 12.20 42.12 3.95
8665 10523 0.457853 TACTCCATCGTGCGCAGTTC 60.458 55.000 12.22 0.00 0.00 3.01
8666 10524 0.175760 ATACTCCATCGTGCGCAGTT 59.824 50.000 12.22 0.00 0.00 3.16
8667 10525 0.175760 AATACTCCATCGTGCGCAGT 59.824 50.000 12.22 5.77 0.00 4.40
8668 10526 1.290203 AAATACTCCATCGTGCGCAG 58.710 50.000 12.22 5.26 0.00 5.18
8669 10527 2.588027 TAAATACTCCATCGTGCGCA 57.412 45.000 5.66 5.66 0.00 6.09
8670 10528 2.347292 CGTTAAATACTCCATCGTGCGC 60.347 50.000 0.00 0.00 0.00 6.09
8671 10529 2.217847 CCGTTAAATACTCCATCGTGCG 59.782 50.000 0.00 0.00 0.00 5.34
8672 10530 3.000925 CACCGTTAAATACTCCATCGTGC 59.999 47.826 0.00 0.00 0.00 5.34
8673 10531 4.178540 ACACCGTTAAATACTCCATCGTG 58.821 43.478 0.00 0.00 0.00 4.35
8674 10532 4.460948 ACACCGTTAAATACTCCATCGT 57.539 40.909 0.00 0.00 0.00 3.73
8675 10533 4.980434 CCTACACCGTTAAATACTCCATCG 59.020 45.833 0.00 0.00 0.00 3.84
8676 10534 5.910614 ACCTACACCGTTAAATACTCCATC 58.089 41.667 0.00 0.00 0.00 3.51
8677 10535 5.945144 ACCTACACCGTTAAATACTCCAT 57.055 39.130 0.00 0.00 0.00 3.41
8678 10536 5.245751 TGAACCTACACCGTTAAATACTCCA 59.754 40.000 0.00 0.00 0.00 3.86
8679 10537 5.578336 GTGAACCTACACCGTTAAATACTCC 59.422 44.000 0.00 0.00 35.07 3.85
8680 10538 6.393171 AGTGAACCTACACCGTTAAATACTC 58.607 40.000 0.00 0.00 41.12 2.59
8681 10539 6.350629 AGTGAACCTACACCGTTAAATACT 57.649 37.500 0.00 0.00 41.12 2.12
8682 10540 7.171337 TCAAAGTGAACCTACACCGTTAAATAC 59.829 37.037 0.00 0.00 41.12 1.89
8683 10541 7.215789 TCAAAGTGAACCTACACCGTTAAATA 58.784 34.615 0.00 0.00 41.12 1.40
8684 10542 6.056884 TCAAAGTGAACCTACACCGTTAAAT 58.943 36.000 0.00 0.00 41.12 1.40
8685 10543 5.426504 TCAAAGTGAACCTACACCGTTAAA 58.573 37.500 0.00 0.00 41.12 1.52
8686 10544 5.021033 TCAAAGTGAACCTACACCGTTAA 57.979 39.130 0.00 0.00 41.12 2.01
8687 10545 4.669206 TCAAAGTGAACCTACACCGTTA 57.331 40.909 0.00 0.00 41.12 3.18
8688 10546 3.547054 TCAAAGTGAACCTACACCGTT 57.453 42.857 0.00 0.00 41.12 4.44
8689 10547 3.547054 TTCAAAGTGAACCTACACCGT 57.453 42.857 0.00 0.00 41.12 4.83
8690 10548 3.122948 CGATTCAAAGTGAACCTACACCG 59.877 47.826 0.00 0.00 39.45 4.94
8691 10549 4.151867 GTCGATTCAAAGTGAACCTACACC 59.848 45.833 0.00 0.00 39.45 4.16
8692 10550 4.143389 CGTCGATTCAAAGTGAACCTACAC 60.143 45.833 0.00 0.00 39.45 2.90
8693 10551 3.985279 CGTCGATTCAAAGTGAACCTACA 59.015 43.478 0.00 0.00 39.45 2.74
8694 10552 3.181533 GCGTCGATTCAAAGTGAACCTAC 60.182 47.826 0.00 0.00 39.45 3.18
8695 10553 2.991190 GCGTCGATTCAAAGTGAACCTA 59.009 45.455 0.00 0.00 39.45 3.08
8696 10554 1.798813 GCGTCGATTCAAAGTGAACCT 59.201 47.619 0.00 0.00 39.45 3.50
8697 10555 1.529438 TGCGTCGATTCAAAGTGAACC 59.471 47.619 0.00 0.00 39.45 3.62
8698 10556 2.941891 TGCGTCGATTCAAAGTGAAC 57.058 45.000 0.00 0.00 39.45 3.18
8699 10557 2.159430 CCATGCGTCGATTCAAAGTGAA 59.841 45.455 0.00 0.00 41.09 3.18
8700 10558 1.731709 CCATGCGTCGATTCAAAGTGA 59.268 47.619 0.00 0.00 0.00 3.41
8701 10559 1.731709 TCCATGCGTCGATTCAAAGTG 59.268 47.619 0.00 0.00 0.00 3.16
8702 10560 1.732259 GTCCATGCGTCGATTCAAAGT 59.268 47.619 0.00 0.00 0.00 2.66
8703 10561 1.267038 CGTCCATGCGTCGATTCAAAG 60.267 52.381 0.00 0.00 0.00 2.77
8704 10562 0.718904 CGTCCATGCGTCGATTCAAA 59.281 50.000 0.00 0.00 0.00 2.69
8705 10563 1.081556 CCGTCCATGCGTCGATTCAA 61.082 55.000 0.00 0.00 0.00 2.69
8706 10564 1.518352 CCGTCCATGCGTCGATTCA 60.518 57.895 0.00 0.00 0.00 2.57
8707 10565 0.597637 ATCCGTCCATGCGTCGATTC 60.598 55.000 0.00 0.00 0.00 2.52
8708 10566 0.179084 AATCCGTCCATGCGTCGATT 60.179 50.000 0.00 0.00 0.00 3.34
8709 10567 0.875908 CAATCCGTCCATGCGTCGAT 60.876 55.000 0.00 0.00 0.00 3.59
8710 10568 1.518352 CAATCCGTCCATGCGTCGA 60.518 57.895 0.00 0.00 0.00 4.20
8711 10569 0.875908 ATCAATCCGTCCATGCGTCG 60.876 55.000 0.00 0.00 0.00 5.12
8712 10570 0.583438 CATCAATCCGTCCATGCGTC 59.417 55.000 0.00 0.00 0.00 5.19
8713 10571 0.107703 ACATCAATCCGTCCATGCGT 60.108 50.000 0.00 0.00 0.00 5.24
8714 10572 0.305617 CACATCAATCCGTCCATGCG 59.694 55.000 0.00 0.00 0.00 4.73
8715 10573 0.029834 GCACATCAATCCGTCCATGC 59.970 55.000 0.00 0.00 0.00 4.06
8716 10574 1.671979 AGCACATCAATCCGTCCATG 58.328 50.000 0.00 0.00 0.00 3.66
8717 10575 2.292267 GAAGCACATCAATCCGTCCAT 58.708 47.619 0.00 0.00 0.00 3.41
8718 10576 1.003003 TGAAGCACATCAATCCGTCCA 59.997 47.619 0.00 0.00 0.00 4.02
8719 10577 1.737838 TGAAGCACATCAATCCGTCC 58.262 50.000 0.00 0.00 0.00 4.79
8729 10587 1.079197 TCCGCACGATGAAGCACAT 60.079 52.632 0.00 0.00 42.47 3.21
8730 10588 1.737735 CTCCGCACGATGAAGCACA 60.738 57.895 0.00 0.00 0.00 4.57
8731 10589 0.807667 ATCTCCGCACGATGAAGCAC 60.808 55.000 0.00 0.00 0.00 4.40
8732 10590 0.528466 GATCTCCGCACGATGAAGCA 60.528 55.000 0.00 0.00 0.00 3.91
8733 10591 1.543941 CGATCTCCGCACGATGAAGC 61.544 60.000 0.00 0.00 0.00 3.86
8734 10592 0.248661 ACGATCTCCGCACGATGAAG 60.249 55.000 0.00 0.00 43.32 3.02
8735 10593 0.248498 GACGATCTCCGCACGATGAA 60.248 55.000 0.00 0.00 43.32 2.57
8736 10594 1.355563 GACGATCTCCGCACGATGA 59.644 57.895 0.00 0.00 43.32 2.92
8737 10595 1.658717 GGACGATCTCCGCACGATG 60.659 63.158 0.00 0.00 43.32 3.84
8738 10596 2.119029 TGGACGATCTCCGCACGAT 61.119 57.895 0.00 0.00 43.03 3.73
8739 10597 2.748647 TGGACGATCTCCGCACGA 60.749 61.111 0.00 0.00 43.03 4.35
8744 10602 1.516386 CGGTTGTGGACGATCTCCG 60.516 63.158 0.00 0.00 43.03 4.63
8745 10603 0.458025 GACGGTTGTGGACGATCTCC 60.458 60.000 0.00 4.71 39.97 3.71
8746 10604 0.797249 CGACGGTTGTGGACGATCTC 60.797 60.000 0.00 0.00 0.00 2.75
8747 10605 1.211969 CGACGGTTGTGGACGATCT 59.788 57.895 0.00 0.00 0.00 2.75
8748 10606 1.080974 ACGACGGTTGTGGACGATC 60.081 57.895 0.00 0.00 0.00 3.69
8749 10607 1.372499 CACGACGGTTGTGGACGAT 60.372 57.895 18.86 0.00 33.69 3.73
8750 10608 2.026445 CACGACGGTTGTGGACGA 59.974 61.111 18.86 0.00 33.69 4.20
8751 10609 2.278989 ACACGACGGTTGTGGACG 60.279 61.111 27.46 8.12 41.64 4.79
8752 10610 1.519898 ACACACGACGGTTGTGGAC 60.520 57.895 27.46 0.00 41.64 4.02
8753 10611 1.519676 CACACACGACGGTTGTGGA 60.520 57.895 27.46 0.00 41.64 4.02
8754 10612 0.528033 TACACACACGACGGTTGTGG 60.528 55.000 27.46 19.52 41.64 4.17
8755 10613 0.850217 CTACACACACGACGGTTGTG 59.150 55.000 23.67 23.67 42.99 3.33
8756 10614 0.872881 GCTACACACACGACGGTTGT 60.873 55.000 0.00 0.00 0.00 3.32
8757 10615 0.872451 TGCTACACACACGACGGTTG 60.872 55.000 0.00 0.00 0.00 3.77
8758 10616 0.596600 CTGCTACACACACGACGGTT 60.597 55.000 0.00 0.00 0.00 4.44
8759 10617 1.007734 CTGCTACACACACGACGGT 60.008 57.895 0.00 0.00 0.00 4.83
8760 10618 2.372690 GCTGCTACACACACGACGG 61.373 63.158 0.00 0.00 0.00 4.79
8761 10619 1.660264 TGCTGCTACACACACGACG 60.660 57.895 0.00 0.00 0.00 5.12
8762 10620 0.597637 AGTGCTGCTACACACACGAC 60.598 55.000 11.44 0.00 43.23 4.34
8763 10621 0.318699 GAGTGCTGCTACACACACGA 60.319 55.000 11.44 0.00 43.23 4.35
8764 10622 0.597377 TGAGTGCTGCTACACACACG 60.597 55.000 11.44 0.00 43.23 4.49
8765 10623 1.462283 CATGAGTGCTGCTACACACAC 59.538 52.381 10.78 1.97 42.58 3.82
8766 10624 1.344114 TCATGAGTGCTGCTACACACA 59.656 47.619 10.92 10.92 43.64 3.72
8767 10625 2.084610 TCATGAGTGCTGCTACACAC 57.915 50.000 11.44 6.36 43.23 3.82
8768 10626 2.837532 TTCATGAGTGCTGCTACACA 57.162 45.000 11.44 3.22 43.23 3.72
8769 10627 3.005554 ACATTCATGAGTGCTGCTACAC 58.994 45.455 17.37 1.90 41.02 2.90
8770 10628 3.004862 CACATTCATGAGTGCTGCTACA 58.995 45.455 17.37 0.00 0.00 2.74
8771 10629 3.670311 CACATTCATGAGTGCTGCTAC 57.330 47.619 17.37 0.00 0.00 3.58
8778 10636 2.676839 GTGAGAGGCACATTCATGAGTG 59.323 50.000 16.01 16.01 46.91 3.51
8779 10637 2.983229 GTGAGAGGCACATTCATGAGT 58.017 47.619 0.00 0.00 46.91 3.41
8790 10648 1.002990 CCTGTGCATGTGAGAGGCA 60.003 57.895 0.00 0.00 39.61 4.75
8791 10649 1.748122 CCCTGTGCATGTGAGAGGC 60.748 63.158 0.00 0.00 0.00 4.70
8792 10650 0.107800 CTCCCTGTGCATGTGAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
8793 10651 0.107800 CCTCCCTGTGCATGTGAGAG 60.108 60.000 0.00 0.00 0.00 3.20
8794 10652 1.556373 CCCTCCCTGTGCATGTGAGA 61.556 60.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.