Multiple sequence alignment - TraesCS1B01G292500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G292500 chr1B 100.000 2183 0 0 1 2183 509899425 509897243 0.000000e+00 4032
1 TraesCS1B01G292500 chr1D 90.857 1903 128 23 1 1867 379909736 379907844 0.000000e+00 2508
2 TraesCS1B01G292500 chr1D 86.322 329 40 4 1857 2183 379896097 379895772 9.590000e-94 353
3 TraesCS1B01G292500 chr1A 87.378 2258 170 46 15 2183 480932609 480930378 0.000000e+00 2484


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G292500 chr1B 509897243 509899425 2182 True 4032 4032 100.000 1 2183 1 chr1B.!!$R1 2182
1 TraesCS1B01G292500 chr1D 379907844 379909736 1892 True 2508 2508 90.857 1 1867 1 chr1D.!!$R2 1866
2 TraesCS1B01G292500 chr1A 480930378 480932609 2231 True 2484 2484 87.378 15 2183 1 chr1A.!!$R1 2168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 134 0.457853 TCCTCTTCGATTTCCGCGTG 60.458 55.0 4.92 0.0 38.37 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2188 0.248215 CCGCATCGATTCAACAAGGC 60.248 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.385631 ATGGGCATCCAGCTCCTCT 60.386 57.895 0.00 0.00 45.81 3.69
29 30 1.148048 GGCATCCAGCTCCTCTTCC 59.852 63.158 0.00 0.00 44.79 3.46
37 38 2.894126 CCAGCTCCTCTTCCGTATGTAT 59.106 50.000 0.00 0.00 0.00 2.29
39 40 2.297597 AGCTCCTCTTCCGTATGTATGC 59.702 50.000 0.00 0.00 0.00 3.14
41 42 2.628178 CTCCTCTTCCGTATGTATGCCA 59.372 50.000 0.00 0.00 0.00 4.92
51 52 1.160702 ATGTATGCCATCCACCCCAT 58.839 50.000 0.00 0.00 0.00 4.00
74 75 1.079612 CTCGTGGTGCAGCTCATCA 60.080 57.895 18.08 0.00 32.32 3.07
90 91 4.558178 CTCATCATGCTCTAGTCCATCAC 58.442 47.826 0.00 0.00 0.00 3.06
92 93 2.042464 TCATGCTCTAGTCCATCACCC 58.958 52.381 0.00 0.00 0.00 4.61
93 94 1.764723 CATGCTCTAGTCCATCACCCA 59.235 52.381 0.00 0.00 0.00 4.51
103 108 2.434336 GTCCATCACCCAGTACATGCTA 59.566 50.000 0.00 0.00 0.00 3.49
104 109 3.111484 TCCATCACCCAGTACATGCTAA 58.889 45.455 0.00 0.00 0.00 3.09
105 110 3.716353 TCCATCACCCAGTACATGCTAAT 59.284 43.478 0.00 0.00 0.00 1.73
106 111 3.817084 CCATCACCCAGTACATGCTAATG 59.183 47.826 0.00 0.00 39.89 1.90
108 113 4.568072 TCACCCAGTACATGCTAATGTT 57.432 40.909 0.00 0.00 44.94 2.71
125 130 4.946784 ATGTTTTCCTCTTCGATTTCCG 57.053 40.909 0.00 0.00 40.25 4.30
129 134 0.457853 TCCTCTTCGATTTCCGCGTG 60.458 55.000 4.92 0.00 38.37 5.34
147 159 1.816679 GGCGTGCATGCTCATCTCA 60.817 57.895 28.89 0.00 34.52 3.27
157 169 4.515361 CATGCTCATCTCAAAGAGGTTCT 58.485 43.478 0.00 0.00 32.54 3.01
166 178 1.415672 AAAGAGGTTCTCGGTGGCCA 61.416 55.000 0.00 0.00 35.36 5.36
180 192 2.179018 GCCAACATGCGCGTCAAT 59.821 55.556 8.43 0.00 0.00 2.57
198 210 3.005554 CAATCCTGATGTCTTGTCGCTT 58.994 45.455 0.00 0.00 0.00 4.68
259 278 3.497332 AGGAGGAAATGGATCGACGATA 58.503 45.455 10.97 0.00 0.00 2.92
267 286 1.697982 TGGATCGACGATAGGGAGAGA 59.302 52.381 10.97 0.00 43.77 3.10
272 291 3.882444 TCGACGATAGGGAGAGAGAAAA 58.118 45.455 0.00 0.00 43.77 2.29
368 387 7.946381 TGTTAGTGAGAGTAGATGATGAACT 57.054 36.000 0.00 0.00 0.00 3.01
401 420 4.411869 TCATATCTTATCCCAGTGCACCAA 59.588 41.667 14.63 0.00 0.00 3.67
426 445 6.158023 ACATGTTTAGGGTTAGGATAGACG 57.842 41.667 0.00 0.00 0.00 4.18
427 446 5.659971 ACATGTTTAGGGTTAGGATAGACGT 59.340 40.000 0.00 0.00 0.00 4.34
438 457 7.550196 GGGTTAGGATAGACGTAGATTAGAGAG 59.450 44.444 0.00 0.00 0.00 3.20
444 464 7.658575 GGATAGACGTAGATTAGAGAGTTCAGT 59.341 40.741 0.00 0.00 0.00 3.41
514 534 7.148623 CGTGAGGGTTTATTTCAGACTTTACTC 60.149 40.741 0.00 0.00 0.00 2.59
562 582 4.217767 GGTCTTCATTTTAAAACCTCGCCT 59.782 41.667 1.97 0.00 0.00 5.52
859 879 4.095400 GCCCTCCTCCCTCCCTCA 62.095 72.222 0.00 0.00 0.00 3.86
870 890 0.894141 CCTCCCTCACTCACTCACTG 59.106 60.000 0.00 0.00 0.00 3.66
886 907 1.667191 CTGTGTCGCTCTGCTTGCT 60.667 57.895 0.00 0.00 0.00 3.91
903 924 1.032657 GCTCTGCTCCTCACGTCCTA 61.033 60.000 0.00 0.00 0.00 2.94
1035 1056 0.832135 TGTCCAAGAAGAGGAGCGGT 60.832 55.000 0.00 0.00 35.42 5.68
1037 1058 1.135333 GTCCAAGAAGAGGAGCGGTAG 59.865 57.143 0.00 0.00 35.42 3.18
1061 1082 2.983030 AATGGCCACGCGCAAGAA 60.983 55.556 8.16 0.00 40.31 2.52
1197 1218 3.450457 ACTCCTGATTCCTGAAGCTGTAG 59.550 47.826 0.00 0.00 0.00 2.74
1199 1221 4.610333 TCCTGATTCCTGAAGCTGTAGTA 58.390 43.478 0.00 0.00 0.00 1.82
1200 1222 5.211973 TCCTGATTCCTGAAGCTGTAGTAT 58.788 41.667 0.00 0.00 0.00 2.12
1250 1310 0.965866 TCGATCGGTGGAGAAGCTGT 60.966 55.000 16.41 0.00 0.00 4.40
1255 1315 0.036010 CGGTGGAGAAGCTGTTCCAT 60.036 55.000 19.19 0.00 44.74 3.41
1349 1416 6.146837 CCATATTCGTCTTCTGTGAATCCATC 59.853 42.308 0.00 0.00 34.40 3.51
1360 1427 3.265221 TGTGAATCCATCTTGCCTTCTCT 59.735 43.478 0.00 0.00 0.00 3.10
1361 1428 3.876320 GTGAATCCATCTTGCCTTCTCTC 59.124 47.826 0.00 0.00 0.00 3.20
1363 1430 1.561643 TCCATCTTGCCTTCTCTCGT 58.438 50.000 0.00 0.00 0.00 4.18
1415 1485 5.222631 GGAAAGGCTTCAAAATGTACTGTG 58.777 41.667 0.00 0.00 32.75 3.66
1418 1488 3.254166 AGGCTTCAAAATGTACTGTGCTG 59.746 43.478 0.00 0.00 0.00 4.41
1425 1495 6.052360 TCAAAATGTACTGTGCTGTGTTCTA 58.948 36.000 0.00 0.00 0.00 2.10
1727 1814 5.636123 AGGACCAGATAAGATCGATGTAGT 58.364 41.667 0.54 0.00 0.00 2.73
1776 1863 1.760875 CCTTCCCCTACGCCTAGCA 60.761 63.158 0.00 0.00 0.00 3.49
1818 1905 1.413767 CGTCGAGCACCAGTACATGC 61.414 60.000 8.32 8.32 42.39 4.06
1837 1924 2.159057 TGCGCTCAGATAAGCATCTCAA 60.159 45.455 9.73 0.00 42.62 3.02
1843 1952 4.611943 TCAGATAAGCATCTCAACTACGC 58.388 43.478 0.00 0.00 39.62 4.42
1910 2019 2.373540 TGGAACTTCGGGTACAATCG 57.626 50.000 0.00 0.00 0.00 3.34
1915 2024 4.201783 GGAACTTCGGGTACAATCGAATTG 60.202 45.833 14.90 9.30 43.13 2.32
1932 2041 2.536761 TTGTGGGTAACGGAACTCTG 57.463 50.000 0.00 0.00 37.60 3.35
1939 2048 2.612221 GGTAACGGAACTCTGAACCCAG 60.612 54.545 0.00 0.00 41.74 4.45
1941 2050 0.680061 ACGGAACTCTGAACCCAGAC 59.320 55.000 0.00 0.00 44.01 3.51
1942 2051 0.679505 CGGAACTCTGAACCCAGACA 59.320 55.000 0.00 0.00 44.01 3.41
1952 2061 2.162608 TGAACCCAGACACACAAAAACG 59.837 45.455 0.00 0.00 0.00 3.60
1955 2064 2.162809 ACCCAGACACACAAAAACGAAC 59.837 45.455 0.00 0.00 0.00 3.95
1957 2066 2.422127 CCAGACACACAAAAACGAACCT 59.578 45.455 0.00 0.00 0.00 3.50
1966 2075 4.801516 CACAAAAACGAACCTAAACCAAGG 59.198 41.667 0.00 0.00 42.82 3.61
1970 2079 1.990327 ACGAACCTAAACCAAGGGGAT 59.010 47.619 0.00 0.00 41.32 3.85
1972 2081 3.588396 ACGAACCTAAACCAAGGGGATAA 59.412 43.478 0.00 0.00 41.32 1.75
1975 2084 5.995897 CGAACCTAAACCAAGGGGATAATAG 59.004 44.000 0.00 0.00 41.32 1.73
1976 2085 5.924769 ACCTAAACCAAGGGGATAATAGG 57.075 43.478 0.00 0.00 41.32 2.57
1986 2095 7.020781 ACCAAGGGGATAATAGGACTAGACTAT 59.979 40.741 0.00 1.23 38.05 2.12
2007 2116 9.547753 GACTATAAGCATAAGAAAGAACCATGA 57.452 33.333 0.00 0.00 0.00 3.07
2018 2127 2.370349 AGAACCATGACTCTCGTCGAT 58.630 47.619 0.00 0.00 43.21 3.59
2025 2134 1.943340 TGACTCTCGTCGATGATGGAG 59.057 52.381 17.80 17.80 43.21 3.86
2043 2152 4.651778 TGGAGAACATCGAAAAATCCAGT 58.348 39.130 5.84 0.00 31.89 4.00
2046 2155 5.390991 GGAGAACATCGAAAAATCCAGTCAC 60.391 44.000 0.00 0.00 0.00 3.67
2060 2169 2.559668 CCAGTCACCGAAGTACCTACAA 59.440 50.000 0.00 0.00 0.00 2.41
2079 2188 7.959689 CTACAAAGGACCATAGATGATCAAG 57.040 40.000 0.00 0.00 0.00 3.02
2105 2214 5.651172 TGTTGAATCGATGCGGTAATAAG 57.349 39.130 0.00 0.00 0.00 1.73
2106 2215 4.025229 TGTTGAATCGATGCGGTAATAAGC 60.025 41.667 0.00 0.00 0.00 3.09
2119 2228 7.109501 TGCGGTAATAAGCCAATACATATGAT 58.890 34.615 10.38 0.00 0.00 2.45
2120 2229 7.609918 TGCGGTAATAAGCCAATACATATGATT 59.390 33.333 10.38 2.33 0.00 2.57
2121 2230 7.910162 GCGGTAATAAGCCAATACATATGATTG 59.090 37.037 10.38 13.71 34.63 2.67
2122 2231 9.161629 CGGTAATAAGCCAATACATATGATTGA 57.838 33.333 20.37 8.38 36.57 2.57
2125 2234 5.972107 AAGCCAATACATATGATTGAGGC 57.028 39.130 20.37 18.79 36.57 4.70
2132 2241 3.840991 ACATATGATTGAGGCTGGCAAT 58.159 40.909 10.38 0.00 38.58 3.56
2136 2245 0.379669 GATTGAGGCTGGCAATCGTG 59.620 55.000 11.70 0.00 41.30 4.35
2150 2259 2.916716 CAATCGTGCAAAACATGTAGGC 59.083 45.455 0.00 3.94 36.60 3.93
2175 2289 2.362397 GGCATCACTCCGATCTAGTCAA 59.638 50.000 0.00 0.00 29.21 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.224426 GGTGGATGGCATACATACGGAA 60.224 50.000 16.88 0.00 43.86 4.30
29 30 1.610624 GGGGTGGATGGCATACATACG 60.611 57.143 16.88 0.00 43.86 3.06
37 38 3.807839 CCGATGGGGTGGATGGCA 61.808 66.667 0.00 0.00 0.00 4.92
39 40 4.586235 GGCCGATGGGGTGGATGG 62.586 72.222 0.00 0.00 38.44 3.51
41 42 3.171388 GAGGCCGATGGGGTGGAT 61.171 66.667 0.00 0.00 38.44 3.41
74 75 2.045524 CTGGGTGATGGACTAGAGCAT 58.954 52.381 0.00 0.00 0.00 3.79
90 91 4.949856 AGGAAAACATTAGCATGTACTGGG 59.050 41.667 0.00 0.00 43.34 4.45
92 93 6.992063 AGAGGAAAACATTAGCATGTACTG 57.008 37.500 0.00 0.00 43.34 2.74
93 94 6.313905 CGAAGAGGAAAACATTAGCATGTACT 59.686 38.462 0.00 0.00 43.34 2.73
103 108 4.379499 GCGGAAATCGAAGAGGAAAACATT 60.379 41.667 0.00 0.00 43.63 2.71
104 109 3.127030 GCGGAAATCGAAGAGGAAAACAT 59.873 43.478 0.00 0.00 43.63 2.71
105 110 2.482721 GCGGAAATCGAAGAGGAAAACA 59.517 45.455 0.00 0.00 43.63 2.83
106 111 2.474032 CGCGGAAATCGAAGAGGAAAAC 60.474 50.000 0.00 0.00 43.63 2.43
107 112 1.730064 CGCGGAAATCGAAGAGGAAAA 59.270 47.619 0.00 0.00 43.63 2.29
108 113 1.337447 ACGCGGAAATCGAAGAGGAAA 60.337 47.619 12.47 0.00 43.63 3.13
129 134 1.371337 TTGAGATGAGCATGCACGCC 61.371 55.000 21.98 9.35 0.00 5.68
147 159 1.375326 GGCCACCGAGAACCTCTTT 59.625 57.895 0.00 0.00 0.00 2.52
166 178 0.673333 TCAGGATTGACGCGCATGTT 60.673 50.000 5.73 0.00 0.00 2.71
180 192 1.618343 TCAAGCGACAAGACATCAGGA 59.382 47.619 0.00 0.00 0.00 3.86
219 237 4.570663 CCGTCGGGTGCGATCTCC 62.571 72.222 2.34 0.00 0.00 3.71
233 251 1.132500 GATCCATTTCCTCCTCCCGT 58.868 55.000 0.00 0.00 0.00 5.28
259 278 2.393646 CGATCCCTTTTCTCTCTCCCT 58.606 52.381 0.00 0.00 0.00 4.20
267 286 1.008449 TCCTCTCCCGATCCCTTTTCT 59.992 52.381 0.00 0.00 0.00 2.52
272 291 1.725169 CCTCTCCTCTCCCGATCCCT 61.725 65.000 0.00 0.00 0.00 4.20
347 366 6.183360 GCCAAGTTCATCATCTACTCTCACTA 60.183 42.308 0.00 0.00 0.00 2.74
368 387 4.228210 GGGATAAGATATGATCCTGGCCAA 59.772 45.833 7.01 0.00 41.32 4.52
401 420 7.046033 CGTCTATCCTAACCCTAAACATGTTT 58.954 38.462 25.99 25.99 36.63 2.83
426 445 6.538021 TCGGTACACTGAACTCTCTAATCTAC 59.462 42.308 0.00 0.00 0.00 2.59
427 446 6.538021 GTCGGTACACTGAACTCTCTAATCTA 59.462 42.308 0.00 0.00 32.23 1.98
514 534 5.760253 AGGAGCAATGGTTATATTCACTTCG 59.240 40.000 0.00 0.00 0.00 3.79
569 589 5.067283 GGAGTGAGTTTTCTTTTACTGGCAA 59.933 40.000 0.00 0.00 0.00 4.52
870 890 1.373999 AGAGCAAGCAGAGCGACAC 60.374 57.895 0.00 0.00 37.01 3.67
886 907 0.680280 GGTAGGACGTGAGGAGCAGA 60.680 60.000 0.00 0.00 0.00 4.26
1035 1056 1.522092 CGTGGCCATTGCTCCTCTA 59.478 57.895 9.72 0.00 37.74 2.43
1037 1058 3.512516 GCGTGGCCATTGCTCCTC 61.513 66.667 21.84 0.85 37.74 3.71
1170 1191 3.791245 CTTCAGGAATCAGGAGTAGTGC 58.209 50.000 0.00 0.00 0.00 4.40
1332 1399 3.376546 GGCAAGATGGATTCACAGAAGAC 59.623 47.826 0.00 0.00 0.00 3.01
1378 1448 2.162681 CCTTTCCCATGTTTCTCGCTT 58.837 47.619 0.00 0.00 0.00 4.68
1390 1460 4.280677 CAGTACATTTTGAAGCCTTTCCCA 59.719 41.667 0.00 0.00 32.09 4.37
1391 1461 4.280929 ACAGTACATTTTGAAGCCTTTCCC 59.719 41.667 0.00 0.00 32.09 3.97
1442 1513 8.234136 TCCTTTCCTCTTTTCCTCTTAAAAAC 57.766 34.615 0.00 0.00 0.00 2.43
1446 1517 6.013293 CCTCTCCTTTCCTCTTTTCCTCTTAA 60.013 42.308 0.00 0.00 0.00 1.85
1461 1534 2.273776 GCCTGCCCCTCTCCTTTC 59.726 66.667 0.00 0.00 0.00 2.62
1543 1629 0.317020 GGACGCTCAACAGTGCAAAC 60.317 55.000 0.00 0.00 32.86 2.93
1545 1631 1.153269 TGGACGCTCAACAGTGCAA 60.153 52.632 0.00 0.00 35.82 4.08
1727 1814 5.715279 AGTACACTGCCACTCTTATCACTTA 59.285 40.000 0.00 0.00 0.00 2.24
1776 1863 1.268992 TATGCAGCCTACCACCGGTT 61.269 55.000 2.97 0.00 37.09 4.44
1788 1875 2.947890 GCTCGACGGCATATGCAGC 61.948 63.158 28.07 22.56 44.36 5.25
1818 1905 3.715495 AGTTGAGATGCTTATCTGAGCG 58.285 45.455 0.00 0.00 45.64 5.03
1910 2019 3.435671 CAGAGTTCCGTTACCCACAATTC 59.564 47.826 0.00 0.00 0.00 2.17
1915 2024 2.410939 GTTCAGAGTTCCGTTACCCAC 58.589 52.381 0.00 0.00 0.00 4.61
1917 2026 1.338484 GGGTTCAGAGTTCCGTTACCC 60.338 57.143 0.00 0.00 37.20 3.69
1932 2041 2.420722 TCGTTTTTGTGTGTCTGGGTTC 59.579 45.455 0.00 0.00 0.00 3.62
1939 2048 4.794762 GGTTTAGGTTCGTTTTTGTGTGTC 59.205 41.667 0.00 0.00 0.00 3.67
1941 2050 4.734917 TGGTTTAGGTTCGTTTTTGTGTG 58.265 39.130 0.00 0.00 0.00 3.82
1942 2051 5.388408 TTGGTTTAGGTTCGTTTTTGTGT 57.612 34.783 0.00 0.00 0.00 3.72
1952 2061 6.102174 TCCTATTATCCCCTTGGTTTAGGTTC 59.898 42.308 0.00 0.00 33.17 3.62
1955 2064 5.611408 AGTCCTATTATCCCCTTGGTTTAGG 59.389 44.000 0.00 0.00 34.92 2.69
1957 2066 7.511714 GTCTAGTCCTATTATCCCCTTGGTTTA 59.488 40.741 0.00 0.00 0.00 2.01
1966 2075 9.649316 ATGCTTATAGTCTAGTCCTATTATCCC 57.351 37.037 9.09 0.00 0.00 3.85
1986 2095 7.624549 AGAGTCATGGTTCTTTCTTATGCTTA 58.375 34.615 0.00 0.00 0.00 3.09
1993 2102 4.608948 ACGAGAGTCATGGTTCTTTCTT 57.391 40.909 0.00 0.00 44.19 2.52
2025 2134 4.669197 CGGTGACTGGATTTTTCGATGTTC 60.669 45.833 0.00 0.00 0.00 3.18
2043 2152 3.256631 GTCCTTTGTAGGTACTTCGGTGA 59.743 47.826 0.00 0.00 42.60 4.02
2046 2155 2.564062 TGGTCCTTTGTAGGTACTTCGG 59.436 50.000 0.00 0.00 42.60 4.30
2060 2169 3.979347 AGGCTTGATCATCTATGGTCCTT 59.021 43.478 0.00 0.00 37.11 3.36
2067 2176 6.204301 CGATTCAACAAGGCTTGATCATCTAT 59.796 38.462 32.50 15.19 30.19 1.98
2079 2188 0.248215 CCGCATCGATTCAACAAGGC 60.248 55.000 0.00 0.00 0.00 4.35
2105 2214 4.157289 CCAGCCTCAATCATATGTATTGGC 59.843 45.833 19.16 17.60 35.48 4.52
2106 2215 4.157289 GCCAGCCTCAATCATATGTATTGG 59.843 45.833 19.16 11.41 35.48 3.16
2119 2228 2.334946 GCACGATTGCCAGCCTCAA 61.335 57.895 0.00 0.00 43.66 3.02
2120 2229 2.747460 GCACGATTGCCAGCCTCA 60.747 61.111 0.00 0.00 43.66 3.86
2132 2241 0.515127 CGCCTACATGTTTTGCACGA 59.485 50.000 2.30 0.00 0.00 4.35
2134 2243 0.109319 CCCGCCTACATGTTTTGCAC 60.109 55.000 2.30 0.00 0.00 4.57
2136 2245 1.510844 CCCCGCCTACATGTTTTGC 59.489 57.895 2.30 3.65 0.00 3.68
2138 2247 1.680989 GCCCCCGCCTACATGTTTT 60.681 57.895 2.30 0.00 0.00 2.43
2145 2254 3.462199 GAGTGATGCCCCCGCCTAC 62.462 68.421 0.00 0.00 0.00 3.18
2150 2259 3.521529 GATCGGAGTGATGCCCCCG 62.522 68.421 0.00 0.00 43.02 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.