Multiple sequence alignment - TraesCS1B01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G292100 chr1B 100.000 2696 0 0 1 2696 509154383 509151688 0.000000e+00 4979.0
1 TraesCS1B01G292100 chr1B 90.041 492 23 9 664 1151 551498881 551498412 4.930000e-172 614.0
2 TraesCS1B01G292100 chr1B 100.000 36 0 0 664 699 509186782 509186747 1.730000e-07 67.6
3 TraesCS1B01G292100 chr6A 91.172 691 46 10 1 681 615153855 615153170 0.000000e+00 924.0
4 TraesCS1B01G292100 chr6A 80.926 886 110 28 1188 2054 615152250 615151405 0.000000e+00 645.0
5 TraesCS1B01G292100 chr6A 88.068 352 14 5 853 1196 615153002 615152671 2.520000e-105 392.0
6 TraesCS1B01G292100 chr6A 100.000 46 0 0 664 709 615153158 615153113 4.780000e-13 86.1
7 TraesCS1B01G292100 chr7A 84.154 467 62 3 1049 1515 154893300 154892846 2.460000e-120 442.0
8 TraesCS1B01G292100 chr7A 78.843 553 65 28 1520 2054 154871480 154870962 2.590000e-85 326.0
9 TraesCS1B01G292100 chr7A 78.947 418 42 23 2148 2551 154870933 154870548 2.680000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G292100 chr1B 509151688 509154383 2695 True 4979.000 4979 100.0000 1 2696 1 chr1B.!!$R1 2695
1 TraesCS1B01G292100 chr6A 615151405 615153855 2450 True 511.775 924 90.0415 1 2054 4 chr6A.!!$R1 2053
2 TraesCS1B01G292100 chr7A 154870548 154871480 932 True 284.500 326 78.8950 1520 2551 2 chr7A.!!$R2 1031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 886 0.108804 AACTCGATGGCGACGTTGAT 60.109 50.0 7.08 0.0 42.51 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 3122 0.036732 TGCAGAATCCAAGCCGAAGT 59.963 50.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.717119 ATAAATCCTTAGTTGGCCTCACT 57.283 39.130 3.32 8.96 0.00 3.41
50 51 3.181445 TGGCCTCACTAAGTTGTGTGATT 60.181 43.478 3.32 0.00 41.56 2.57
57 58 5.176774 TCACTAAGTTGTGTGATTAACTGCG 59.823 40.000 8.76 0.00 38.15 5.18
61 63 1.518325 TGTGTGATTAACTGCGTGGG 58.482 50.000 0.00 0.00 0.00 4.61
66 68 3.499157 TGTGATTAACTGCGTGGGTAAAC 59.501 43.478 0.00 0.00 0.00 2.01
89 91 4.816385 CCACATGCAATTCCTATTCTACGT 59.184 41.667 0.00 0.00 0.00 3.57
102 106 6.070995 TCCTATTCTACGTTCATTGTGGAACT 60.071 38.462 0.00 0.00 43.87 3.01
147 152 2.263741 CGCAATGGGCCTATGGAGC 61.264 63.158 7.87 9.33 40.31 4.70
158 164 3.477530 GCCTATGGAGCGGTTTTTCTAT 58.522 45.455 0.00 0.00 0.00 1.98
160 166 4.023963 GCCTATGGAGCGGTTTTTCTATTC 60.024 45.833 0.00 0.00 0.00 1.75
202 208 4.034285 TCTTCCCTCTTTCATGTTTCCC 57.966 45.455 0.00 0.00 0.00 3.97
212 218 6.816136 TCTTTCATGTTTCCCTTTCCTTTTC 58.184 36.000 0.00 0.00 0.00 2.29
293 299 9.821662 GTTCAACCTTTGTCACTAATATGTTAC 57.178 33.333 0.00 0.00 0.00 2.50
301 307 9.881529 TTTGTCACTAATATGTTACCGTTTTTC 57.118 29.630 0.00 0.00 0.00 2.29
305 311 9.064706 TCACTAATATGTTACCGTTTTTCCAAA 57.935 29.630 0.00 0.00 0.00 3.28
310 316 5.388408 TGTTACCGTTTTTCCAAAACACT 57.612 34.783 11.58 0.15 0.00 3.55
311 317 5.162075 TGTTACCGTTTTTCCAAAACACTG 58.838 37.500 11.58 3.40 0.00 3.66
315 321 4.082136 ACCGTTTTTCCAAAACACTGCTAA 60.082 37.500 11.58 0.00 0.00 3.09
348 354 9.183368 TGACACATGGACATTTATTAAGCATAA 57.817 29.630 0.00 0.00 0.00 1.90
460 466 8.638565 CATCGTTTTATGTTTGAAGTGATTTCC 58.361 33.333 0.00 0.00 34.77 3.13
533 540 3.205338 GCAGCAAGGGAACATTTTGTTT 58.795 40.909 0.00 0.00 41.28 2.83
615 622 8.659925 TTACGTCTGAACTGGTTTTAATACAA 57.340 30.769 0.00 0.00 0.00 2.41
726 762 4.684703 CGCAGGCTATAATATAATACGGGC 59.315 45.833 0.00 0.00 0.00 6.13
727 763 4.995487 GCAGGCTATAATATAATACGGGCC 59.005 45.833 0.00 0.00 37.57 5.80
728 764 5.454187 GCAGGCTATAATATAATACGGGCCA 60.454 44.000 4.39 0.00 39.48 5.36
729 765 6.744339 GCAGGCTATAATATAATACGGGCCAT 60.744 42.308 4.39 0.00 39.48 4.40
730 766 7.224297 CAGGCTATAATATAATACGGGCCATT 58.776 38.462 4.39 0.00 39.48 3.16
731 767 7.719633 CAGGCTATAATATAATACGGGCCATTT 59.280 37.037 4.39 0.00 39.48 2.32
732 768 7.719633 AGGCTATAATATAATACGGGCCATTTG 59.280 37.037 4.39 0.00 39.48 2.32
733 769 7.040686 GGCTATAATATAATACGGGCCATTTGG 60.041 40.741 4.39 0.00 37.30 3.28
744 780 3.212377 CCATTTGGCCCATGCTACT 57.788 52.632 0.00 0.00 37.74 2.57
745 781 1.488390 CCATTTGGCCCATGCTACTT 58.512 50.000 0.00 0.00 37.74 2.24
746 782 1.832998 CCATTTGGCCCATGCTACTTT 59.167 47.619 0.00 0.00 37.74 2.66
747 783 2.419021 CCATTTGGCCCATGCTACTTTG 60.419 50.000 0.00 0.00 37.74 2.77
748 784 2.008242 TTTGGCCCATGCTACTTTGT 57.992 45.000 0.00 0.00 37.74 2.83
749 785 1.255882 TTGGCCCATGCTACTTTGTG 58.744 50.000 0.00 0.00 37.74 3.33
750 786 0.611618 TGGCCCATGCTACTTTGTGG 60.612 55.000 0.00 0.00 37.74 4.17
751 787 0.611896 GGCCCATGCTACTTTGTGGT 60.612 55.000 0.00 0.00 37.74 4.16
752 788 1.256812 GCCCATGCTACTTTGTGGTT 58.743 50.000 0.00 0.00 33.53 3.67
753 789 1.067635 GCCCATGCTACTTTGTGGTTG 60.068 52.381 0.00 0.00 33.53 3.77
785 821 1.744741 GAGAAGCTGTCAGCCTGGC 60.745 63.158 21.32 11.65 43.77 4.85
794 850 2.118076 CAGCCTGGCCCCTCAAAA 59.882 61.111 16.57 0.00 0.00 2.44
817 873 7.659652 AAAACAAAAACAAAATGGAACTCGA 57.340 28.000 0.00 0.00 0.00 4.04
818 874 7.841915 AAACAAAAACAAAATGGAACTCGAT 57.158 28.000 0.00 0.00 0.00 3.59
819 875 6.826893 ACAAAAACAAAATGGAACTCGATG 57.173 33.333 0.00 0.00 0.00 3.84
820 876 5.752955 ACAAAAACAAAATGGAACTCGATGG 59.247 36.000 0.00 0.00 0.00 3.51
821 877 3.575965 AACAAAATGGAACTCGATGGC 57.424 42.857 0.00 0.00 0.00 4.40
822 878 1.468520 ACAAAATGGAACTCGATGGCG 59.531 47.619 0.00 0.00 39.35 5.69
823 879 1.737236 CAAAATGGAACTCGATGGCGA 59.263 47.619 0.00 0.00 45.71 5.54
824 880 1.369625 AAATGGAACTCGATGGCGAC 58.630 50.000 0.00 0.00 42.51 5.19
825 881 0.806102 AATGGAACTCGATGGCGACG 60.806 55.000 0.00 0.00 42.51 5.12
826 882 1.945354 ATGGAACTCGATGGCGACGT 61.945 55.000 0.00 0.00 42.51 4.34
827 883 1.445582 GGAACTCGATGGCGACGTT 60.446 57.895 0.00 0.00 42.51 3.99
828 884 1.683790 GGAACTCGATGGCGACGTTG 61.684 60.000 0.00 0.00 42.51 4.10
829 885 0.731514 GAACTCGATGGCGACGTTGA 60.732 55.000 7.08 0.00 42.51 3.18
830 886 0.108804 AACTCGATGGCGACGTTGAT 60.109 50.000 7.08 0.00 42.51 2.57
831 887 0.108804 ACTCGATGGCGACGTTGATT 60.109 50.000 7.08 0.00 42.51 2.57
832 888 0.572590 CTCGATGGCGACGTTGATTC 59.427 55.000 7.08 0.00 42.51 2.52
833 889 0.172578 TCGATGGCGACGTTGATTCT 59.827 50.000 7.08 0.00 42.51 2.40
845 901 2.030946 CGTTGATTCTGCTTCCGATTCC 59.969 50.000 0.00 0.00 0.00 3.01
846 902 1.939974 TGATTCTGCTTCCGATTCCG 58.060 50.000 0.00 0.00 0.00 4.30
847 903 1.480545 TGATTCTGCTTCCGATTCCGA 59.519 47.619 0.00 0.00 38.22 4.55
848 904 1.861575 GATTCTGCTTCCGATTCCGAC 59.138 52.381 0.00 0.00 38.22 4.79
849 905 0.606096 TTCTGCTTCCGATTCCGACA 59.394 50.000 0.00 0.00 38.22 4.35
850 906 0.173481 TCTGCTTCCGATTCCGACAG 59.827 55.000 0.00 0.00 38.22 3.51
851 907 0.807667 CTGCTTCCGATTCCGACAGG 60.808 60.000 0.00 0.00 38.22 4.00
917 973 3.462021 CTCCTCTTTAAATCTGGAGGCG 58.538 50.000 13.78 6.59 43.46 5.52
918 974 2.170607 TCCTCTTTAAATCTGGAGGCGG 59.829 50.000 13.78 0.00 43.46 6.13
919 975 1.943340 CTCTTTAAATCTGGAGGCGGC 59.057 52.381 0.00 0.00 0.00 6.53
920 976 0.657840 CTTTAAATCTGGAGGCGGCG 59.342 55.000 0.51 0.51 0.00 6.46
921 977 0.250793 TTTAAATCTGGAGGCGGCGA 59.749 50.000 12.98 0.00 0.00 5.54
922 978 0.179084 TTAAATCTGGAGGCGGCGAG 60.179 55.000 12.98 0.00 0.00 5.03
923 979 1.040893 TAAATCTGGAGGCGGCGAGA 61.041 55.000 12.98 3.96 0.00 4.04
924 980 1.690219 AAATCTGGAGGCGGCGAGAT 61.690 55.000 12.98 6.65 35.25 2.75
925 981 2.093537 AATCTGGAGGCGGCGAGATC 62.094 60.000 12.98 4.25 33.04 2.75
926 982 4.292178 CTGGAGGCGGCGAGATCC 62.292 72.222 12.98 14.78 0.00 3.36
928 984 4.292178 GGAGGCGGCGAGATCCAG 62.292 72.222 12.98 0.00 0.00 3.86
929 985 4.292178 GAGGCGGCGAGATCCAGG 62.292 72.222 12.98 0.00 0.00 4.45
972 1028 1.076533 CAACCCACGTCGAATCGAGG 61.077 60.000 21.56 21.56 45.39 4.63
1009 1073 2.751436 CACCCGTGATGGCCCAAG 60.751 66.667 0.00 0.00 35.87 3.61
1047 1111 0.323542 ACGTCGACCTGGAGAGGAAT 60.324 55.000 10.58 0.99 42.93 3.01
1060 1124 3.713764 GGAGAGGAATTCCAAGGATCTGA 59.286 47.826 26.22 0.00 38.89 3.27
1093 1157 3.357079 CAGGCCACGCACAAGGTC 61.357 66.667 5.01 0.00 0.00 3.85
1103 1167 0.663153 GCACAAGGTCACTCAACCAC 59.337 55.000 0.00 0.00 42.12 4.16
1120 1184 2.892425 CCGATCTTGACGCCCTGC 60.892 66.667 0.00 0.00 0.00 4.85
1121 1185 2.185350 CGATCTTGACGCCCTGCT 59.815 61.111 0.00 0.00 0.00 4.24
1122 1186 2.169789 CGATCTTGACGCCCTGCTG 61.170 63.158 0.00 0.00 0.00 4.41
1123 1187 1.817099 GATCTTGACGCCCTGCTGG 60.817 63.158 1.89 1.89 37.09 4.85
1124 1188 2.244117 GATCTTGACGCCCTGCTGGA 62.244 60.000 11.88 0.00 35.39 3.86
1131 1195 4.025858 GCCCTGCTGGAGCTGTCA 62.026 66.667 11.88 0.00 42.66 3.58
1132 1196 2.268280 CCCTGCTGGAGCTGTCAG 59.732 66.667 11.88 8.81 42.66 3.51
1133 1197 2.288778 CCCTGCTGGAGCTGTCAGA 61.289 63.158 11.88 3.03 42.66 3.27
1153 1217 3.515104 AGAGGAGCAGGAAGAAGAAGAAG 59.485 47.826 0.00 0.00 0.00 2.85
1154 1218 3.513515 GAGGAGCAGGAAGAAGAAGAAGA 59.486 47.826 0.00 0.00 0.00 2.87
1155 1219 3.906846 AGGAGCAGGAAGAAGAAGAAGAA 59.093 43.478 0.00 0.00 0.00 2.52
1212 1705 3.553828 TCTTTAATGGAAGGTAGGGCG 57.446 47.619 0.00 0.00 0.00 6.13
1215 1708 2.035237 TAATGGAAGGTAGGGCGGCG 62.035 60.000 0.51 0.51 0.00 6.46
1243 1736 0.530870 GGCAGCCCTCGATGAGTTAC 60.531 60.000 0.00 0.00 0.00 2.50
1245 1738 1.804372 GCAGCCCTCGATGAGTTACTG 60.804 57.143 0.00 0.00 0.00 2.74
1251 1744 1.227263 CGATGAGTTACTGGCCCGG 60.227 63.158 0.00 0.00 0.00 5.73
1254 1747 0.988832 ATGAGTTACTGGCCCGGAAA 59.011 50.000 0.73 0.00 0.00 3.13
1256 1749 1.271163 TGAGTTACTGGCCCGGAAAAG 60.271 52.381 0.73 0.00 0.00 2.27
1265 1758 1.678970 CCCGGAAAAGGAGCAAGGG 60.679 63.158 0.73 0.00 0.00 3.95
1274 1767 1.136329 AGGAGCAAGGGTGGTGATGT 61.136 55.000 0.00 0.00 35.00 3.06
1280 1773 2.625790 GCAAGGGTGGTGATGTTAAACA 59.374 45.455 0.00 0.00 0.00 2.83
1281 1774 3.068873 GCAAGGGTGGTGATGTTAAACAA 59.931 43.478 0.00 0.00 0.00 2.83
1284 1777 5.529581 AGGGTGGTGATGTTAAACAAAAG 57.470 39.130 0.00 0.00 0.00 2.27
1286 1779 4.055360 GGTGGTGATGTTAAACAAAAGGC 58.945 43.478 0.00 0.00 0.00 4.35
1296 1789 0.539438 AACAAAAGGCTCGGATGGCA 60.539 50.000 0.00 0.00 34.73 4.92
1323 1816 2.028930 GGACGTCAACTTCATCCTGTCT 60.029 50.000 18.91 0.00 0.00 3.41
1333 1826 4.594920 ACTTCATCCTGTCTCTCAAAAGGA 59.405 41.667 0.00 0.00 42.84 3.36
1334 1827 5.072329 ACTTCATCCTGTCTCTCAAAAGGAA 59.928 40.000 0.00 0.00 41.99 3.36
1341 1834 5.041191 TGTCTCTCAAAAGGAAAGAGCTT 57.959 39.130 0.00 0.00 37.14 3.74
1363 1856 2.673523 GCATGGAGCACCTGGACT 59.326 61.111 0.00 0.00 44.79 3.85
1367 1860 2.359230 GGAGCACCTGGACTGCAC 60.359 66.667 11.35 5.31 37.08 4.57
1383 1876 1.966493 GCACGAGCCACCATTACACG 61.966 60.000 0.00 0.00 33.58 4.49
1386 1879 2.435938 AGCCACCATTACACGCCG 60.436 61.111 0.00 0.00 0.00 6.46
1387 1880 3.505184 GCCACCATTACACGCCGG 61.505 66.667 0.00 0.00 0.00 6.13
1407 1900 2.279784 CGGATGGAGGAGAAGCGC 60.280 66.667 0.00 0.00 0.00 5.92
1424 1917 3.842923 CCGGCTGCACGAGGAGAT 61.843 66.667 5.39 0.00 34.74 2.75
1434 1927 2.101582 GCACGAGGAGATAGTGGTCATT 59.898 50.000 0.00 0.00 35.27 2.57
1439 1932 2.846206 AGGAGATAGTGGTCATTTGCCA 59.154 45.455 0.00 0.00 0.00 4.92
1440 1933 3.266772 AGGAGATAGTGGTCATTTGCCAA 59.733 43.478 0.00 0.00 37.81 4.52
1441 1934 4.016444 GGAGATAGTGGTCATTTGCCAAA 58.984 43.478 0.00 0.00 37.81 3.28
1446 1939 4.525912 AGTGGTCATTTGCCAAAAGATC 57.474 40.909 0.00 0.00 37.81 2.75
1452 1945 2.961522 TTTGCCAAAAGATCGACGAC 57.038 45.000 0.00 0.00 0.00 4.34
1463 1956 3.148340 TCGACGACGAGATTGAGGA 57.852 52.632 5.75 0.00 43.81 3.71
1464 1957 1.007580 TCGACGACGAGATTGAGGAG 58.992 55.000 5.75 0.00 43.81 3.69
1484 1977 1.228184 GCCAGGCCCAGATCATCAG 60.228 63.158 0.00 0.00 0.00 2.90
1489 1982 2.027929 CAGGCCCAGATCATCAGAGATC 60.028 54.545 0.00 0.00 43.73 2.75
1557 2056 2.052157 GACGAGGAGTTCAACGAGTTG 58.948 52.381 9.51 9.51 41.71 3.16
1567 2066 5.805728 AGTTCAACGAGTTGGAAAGGATAT 58.194 37.500 14.99 0.00 40.78 1.63
1620 2119 1.583967 CATGGACGAGAGACGACGC 60.584 63.158 0.00 0.00 45.77 5.19
1627 2126 0.587737 CGAGAGACGACGCATGAGAC 60.588 60.000 2.50 0.00 45.77 3.36
1628 2127 0.730265 GAGAGACGACGCATGAGACT 59.270 55.000 2.50 0.00 0.00 3.24
1638 2137 3.763356 ATGAGACTCGCTGCCGCA 61.763 61.111 0.00 0.00 35.30 5.69
1639 2138 3.997064 ATGAGACTCGCTGCCGCAC 62.997 63.158 0.00 0.00 35.30 5.34
1652 2151 2.180769 CGCACGAACGGAGGATGA 59.819 61.111 0.00 0.00 0.00 2.92
1653 2152 1.874019 CGCACGAACGGAGGATGAG 60.874 63.158 0.00 0.00 0.00 2.90
1654 2153 1.519455 GCACGAACGGAGGATGAGG 60.519 63.158 0.00 0.00 0.00 3.86
1655 2154 1.890894 CACGAACGGAGGATGAGGT 59.109 57.895 0.00 0.00 0.00 3.85
1656 2155 0.246635 CACGAACGGAGGATGAGGTT 59.753 55.000 0.00 0.00 0.00 3.50
1657 2156 0.246635 ACGAACGGAGGATGAGGTTG 59.753 55.000 0.00 0.00 0.00 3.77
1658 2157 0.530744 CGAACGGAGGATGAGGTTGA 59.469 55.000 0.00 0.00 0.00 3.18
1659 2158 1.067142 CGAACGGAGGATGAGGTTGAA 60.067 52.381 0.00 0.00 0.00 2.69
1660 2159 2.622436 GAACGGAGGATGAGGTTGAAG 58.378 52.381 0.00 0.00 0.00 3.02
1661 2160 0.905357 ACGGAGGATGAGGTTGAAGG 59.095 55.000 0.00 0.00 0.00 3.46
1662 2161 0.462759 CGGAGGATGAGGTTGAAGGC 60.463 60.000 0.00 0.00 0.00 4.35
1663 2162 0.915364 GGAGGATGAGGTTGAAGGCT 59.085 55.000 0.00 0.00 0.00 4.58
1664 2163 1.283321 GGAGGATGAGGTTGAAGGCTT 59.717 52.381 0.00 0.00 0.00 4.35
1665 2164 2.637947 GAGGATGAGGTTGAAGGCTTC 58.362 52.381 20.27 20.27 0.00 3.86
1666 2165 1.988107 AGGATGAGGTTGAAGGCTTCA 59.012 47.619 25.38 25.38 38.04 3.02
1667 2166 2.087646 GGATGAGGTTGAAGGCTTCAC 58.912 52.381 28.58 21.49 39.87 3.18
1668 2167 2.087646 GATGAGGTTGAAGGCTTCACC 58.912 52.381 28.58 27.82 39.87 4.02
1669 2168 0.250295 TGAGGTTGAAGGCTTCACCG 60.250 55.000 28.58 0.00 46.52 4.94
1670 2169 0.250338 GAGGTTGAAGGCTTCACCGT 60.250 55.000 28.58 23.06 46.52 4.83
1671 2170 0.250338 AGGTTGAAGGCTTCACCGTC 60.250 55.000 28.58 17.83 46.29 4.79
1691 2190 2.306805 TCAAGCCACACCATCTTGATCT 59.693 45.455 0.00 0.00 40.63 2.75
1703 2202 6.598457 CACCATCTTGATCTCTGAGAAACATT 59.402 38.462 12.00 0.00 0.00 2.71
1718 2225 6.127647 TGAGAAACATTATTGCCCAGAATCAC 60.128 38.462 0.00 0.00 0.00 3.06
1724 2231 5.441718 TTATTGCCCAGAATCACTTCTCT 57.558 39.130 0.00 0.00 39.78 3.10
1730 2237 2.005451 CAGAATCACTTCTCTTGCCGG 58.995 52.381 0.00 0.00 39.78 6.13
1734 2241 2.859165 TCACTTCTCTTGCCGGATTT 57.141 45.000 5.05 0.00 0.00 2.17
1736 2243 4.280436 TCACTTCTCTTGCCGGATTTAA 57.720 40.909 5.05 0.00 0.00 1.52
1738 2245 5.253330 TCACTTCTCTTGCCGGATTTAATT 58.747 37.500 5.05 0.00 0.00 1.40
1740 2247 6.030228 CACTTCTCTTGCCGGATTTAATTTC 58.970 40.000 5.05 0.00 0.00 2.17
1741 2248 5.125578 ACTTCTCTTGCCGGATTTAATTTCC 59.874 40.000 5.05 0.00 0.00 3.13
1748 2256 5.233988 TGCCGGATTTAATTTCCTTGTTTG 58.766 37.500 5.05 0.00 0.00 2.93
1752 2260 6.367695 CCGGATTTAATTTCCTTGTTTGTTCC 59.632 38.462 0.00 0.00 0.00 3.62
1753 2261 6.367695 CGGATTTAATTTCCTTGTTTGTTCCC 59.632 38.462 4.08 0.00 0.00 3.97
1762 2270 4.642885 TCCTTGTTTGTTCCCTAGTTTGTG 59.357 41.667 0.00 0.00 0.00 3.33
1780 2288 3.659786 TGTGTGGTCCGAATTTCTACAG 58.340 45.455 0.00 0.00 0.00 2.74
1782 2290 2.007608 GTGGTCCGAATTTCTACAGCC 58.992 52.381 0.00 0.00 0.00 4.85
1786 2294 3.118884 GGTCCGAATTTCTACAGCCAGTA 60.119 47.826 0.00 0.00 0.00 2.74
1801 2309 4.393062 CAGCCAGTACCAACTCTGTTAATG 59.607 45.833 0.00 0.00 31.97 1.90
1809 2317 2.884012 CAACTCTGTTAATGTGCACCCA 59.116 45.455 15.69 0.00 0.00 4.51
1818 2326 6.393990 TGTTAATGTGCACCCATGTTTTATC 58.606 36.000 15.69 1.92 0.00 1.75
1824 2336 6.804677 TGTGCACCCATGTTTTATCATTATC 58.195 36.000 15.69 0.00 0.00 1.75
1827 2339 8.292448 GTGCACCCATGTTTTATCATTATCTAG 58.708 37.037 5.22 0.00 0.00 2.43
1932 2444 1.692519 GGTGTATCTATGGCCGGTTCT 59.307 52.381 1.90 0.00 0.00 3.01
1935 2447 3.825014 GTGTATCTATGGCCGGTTCTCTA 59.175 47.826 1.90 0.00 0.00 2.43
1945 2457 5.850614 TGGCCGGTTCTCTATTATTTCTAC 58.149 41.667 1.90 0.00 0.00 2.59
1946 2458 5.221581 TGGCCGGTTCTCTATTATTTCTACC 60.222 44.000 1.90 0.00 0.00 3.18
2018 2538 4.605640 TTTTCAAAATCAAGGAGGGCAG 57.394 40.909 0.00 0.00 0.00 4.85
2024 2544 0.183014 ATCAAGGAGGGCAGCATGAG 59.817 55.000 0.00 0.00 39.69 2.90
2030 2550 1.093159 GAGGGCAGCATGAGACAAAG 58.907 55.000 0.00 0.00 39.69 2.77
2037 2557 4.500375 GGCAGCATGAGACAAAGAAAAACT 60.500 41.667 0.00 0.00 39.69 2.66
2038 2558 5.278463 GGCAGCATGAGACAAAGAAAAACTA 60.278 40.000 0.00 0.00 39.69 2.24
2054 2574 1.826385 ACTATGCAAGTTCAGGCCAC 58.174 50.000 5.01 0.00 33.35 5.01
2055 2575 1.352352 ACTATGCAAGTTCAGGCCACT 59.648 47.619 5.01 0.00 33.35 4.00
2056 2576 2.571653 ACTATGCAAGTTCAGGCCACTA 59.428 45.455 5.01 0.00 33.35 2.74
2057 2577 2.814805 ATGCAAGTTCAGGCCACTAT 57.185 45.000 5.01 0.00 0.00 2.12
2058 2578 2.584835 TGCAAGTTCAGGCCACTATT 57.415 45.000 5.01 0.00 0.00 1.73
2059 2579 2.161855 TGCAAGTTCAGGCCACTATTG 58.838 47.619 5.01 4.37 0.00 1.90
2060 2580 1.135286 GCAAGTTCAGGCCACTATTGC 60.135 52.381 5.01 11.16 35.35 3.56
2061 2581 2.440409 CAAGTTCAGGCCACTATTGCT 58.560 47.619 5.01 0.00 0.00 3.91
2062 2582 2.409948 AGTTCAGGCCACTATTGCTC 57.590 50.000 5.01 0.00 0.00 4.26
2063 2583 1.912043 AGTTCAGGCCACTATTGCTCT 59.088 47.619 5.01 0.00 0.00 4.09
2064 2584 2.093235 AGTTCAGGCCACTATTGCTCTC 60.093 50.000 5.01 0.00 0.00 3.20
2065 2585 1.571955 TCAGGCCACTATTGCTCTCA 58.428 50.000 5.01 0.00 0.00 3.27
2066 2586 1.908619 TCAGGCCACTATTGCTCTCAA 59.091 47.619 5.01 0.00 36.51 3.02
2067 2587 2.093288 TCAGGCCACTATTGCTCTCAAG 60.093 50.000 5.01 0.00 35.37 3.02
2068 2588 2.093288 CAGGCCACTATTGCTCTCAAGA 60.093 50.000 5.01 0.00 35.37 3.02
2069 2589 2.093235 AGGCCACTATTGCTCTCAAGAC 60.093 50.000 5.01 0.00 35.37 3.01
2070 2590 2.355108 GGCCACTATTGCTCTCAAGACA 60.355 50.000 0.00 0.00 35.37 3.41
2072 2592 3.126000 GCCACTATTGCTCTCAAGACAAC 59.874 47.826 0.00 0.00 35.37 3.32
2073 2593 3.686726 CCACTATTGCTCTCAAGACAACC 59.313 47.826 0.00 0.00 35.37 3.77
2074 2594 4.564406 CCACTATTGCTCTCAAGACAACCT 60.564 45.833 0.00 0.00 35.37 3.50
2075 2595 4.629200 CACTATTGCTCTCAAGACAACCTC 59.371 45.833 0.00 0.00 35.37 3.85
2076 2596 2.154854 TTGCTCTCAAGACAACCTCG 57.845 50.000 0.00 0.00 0.00 4.63
2077 2597 0.319900 TGCTCTCAAGACAACCTCGC 60.320 55.000 0.00 0.00 0.00 5.03
2078 2598 0.319900 GCTCTCAAGACAACCTCGCA 60.320 55.000 0.00 0.00 0.00 5.10
2079 2599 1.674221 GCTCTCAAGACAACCTCGCAT 60.674 52.381 0.00 0.00 0.00 4.73
2080 2600 2.266554 CTCTCAAGACAACCTCGCATC 58.733 52.381 0.00 0.00 0.00 3.91
2081 2601 0.994995 CTCAAGACAACCTCGCATCG 59.005 55.000 0.00 0.00 0.00 3.84
2082 2602 0.389817 TCAAGACAACCTCGCATCGG 60.390 55.000 0.00 0.00 0.00 4.18
2083 2603 0.389817 CAAGACAACCTCGCATCGGA 60.390 55.000 0.00 0.00 0.00 4.55
2084 2604 0.389948 AAGACAACCTCGCATCGGAC 60.390 55.000 0.00 0.00 0.00 4.79
2085 2605 1.810030 GACAACCTCGCATCGGACC 60.810 63.158 0.00 0.00 0.00 4.46
2086 2606 2.511600 CAACCTCGCATCGGACCC 60.512 66.667 0.00 0.00 0.00 4.46
2087 2607 3.782443 AACCTCGCATCGGACCCC 61.782 66.667 0.00 0.00 0.00 4.95
2089 2609 3.781307 CCTCGCATCGGACCCCAA 61.781 66.667 0.00 0.00 0.00 4.12
2090 2610 2.511600 CTCGCATCGGACCCCAAC 60.512 66.667 0.00 0.00 0.00 3.77
2091 2611 4.090588 TCGCATCGGACCCCAACC 62.091 66.667 0.00 0.00 0.00 3.77
2092 2612 4.402528 CGCATCGGACCCCAACCA 62.403 66.667 0.00 0.00 0.00 3.67
2093 2613 2.034999 GCATCGGACCCCAACCAA 59.965 61.111 0.00 0.00 0.00 3.67
2094 2614 2.340328 GCATCGGACCCCAACCAAC 61.340 63.158 0.00 0.00 0.00 3.77
2095 2615 1.677633 CATCGGACCCCAACCAACC 60.678 63.158 0.00 0.00 0.00 3.77
2096 2616 2.914310 ATCGGACCCCAACCAACCC 61.914 63.158 0.00 0.00 0.00 4.11
2097 2617 3.892162 CGGACCCCAACCAACCCA 61.892 66.667 0.00 0.00 0.00 4.51
2098 2618 2.117423 GGACCCCAACCAACCCAG 59.883 66.667 0.00 0.00 0.00 4.45
2099 2619 2.466186 GGACCCCAACCAACCCAGA 61.466 63.158 0.00 0.00 0.00 3.86
2100 2620 1.074951 GACCCCAACCAACCCAGAG 59.925 63.158 0.00 0.00 0.00 3.35
2101 2621 1.386772 ACCCCAACCAACCCAGAGA 60.387 57.895 0.00 0.00 0.00 3.10
2102 2622 0.776080 ACCCCAACCAACCCAGAGAT 60.776 55.000 0.00 0.00 0.00 2.75
2103 2623 1.295020 CCCCAACCAACCCAGAGATA 58.705 55.000 0.00 0.00 0.00 1.98
2104 2624 1.852965 CCCCAACCAACCCAGAGATAT 59.147 52.381 0.00 0.00 0.00 1.63
2105 2625 2.158608 CCCCAACCAACCCAGAGATATC 60.159 54.545 0.00 0.00 0.00 1.63
2106 2626 2.509548 CCCAACCAACCCAGAGATATCA 59.490 50.000 5.32 0.00 0.00 2.15
2107 2627 3.139025 CCCAACCAACCCAGAGATATCAT 59.861 47.826 5.32 0.00 0.00 2.45
2108 2628 4.139786 CCAACCAACCCAGAGATATCATG 58.860 47.826 5.32 3.32 0.00 3.07
2109 2629 3.498774 ACCAACCCAGAGATATCATGC 57.501 47.619 5.32 0.00 0.00 4.06
2110 2630 2.224378 ACCAACCCAGAGATATCATGCG 60.224 50.000 5.32 0.00 0.00 4.73
2111 2631 1.802960 CAACCCAGAGATATCATGCGC 59.197 52.381 0.00 0.00 0.00 6.09
2112 2632 0.322975 ACCCAGAGATATCATGCGCC 59.677 55.000 4.18 0.00 0.00 6.53
2113 2633 0.322648 CCCAGAGATATCATGCGCCA 59.677 55.000 4.18 0.00 0.00 5.69
2114 2634 1.436600 CCAGAGATATCATGCGCCAC 58.563 55.000 4.18 0.00 0.00 5.01
2115 2635 1.436600 CAGAGATATCATGCGCCACC 58.563 55.000 4.18 0.00 0.00 4.61
2116 2636 0.322975 AGAGATATCATGCGCCACCC 59.677 55.000 4.18 0.00 0.00 4.61
2117 2637 1.004560 AGATATCATGCGCCACCCG 60.005 57.895 4.18 0.00 40.75 5.28
2118 2638 1.301716 GATATCATGCGCCACCCGT 60.302 57.895 4.18 0.00 39.71 5.28
2119 2639 1.568612 GATATCATGCGCCACCCGTG 61.569 60.000 4.18 0.00 39.71 4.94
2128 2648 4.778143 CCACCCGTGCCTACTGCC 62.778 72.222 0.00 0.00 40.16 4.85
2129 2649 4.778143 CACCCGTGCCTACTGCCC 62.778 72.222 0.00 0.00 40.16 5.36
2131 2651 3.797353 CCCGTGCCTACTGCCCAT 61.797 66.667 0.00 0.00 40.16 4.00
2132 2652 2.439960 CCCGTGCCTACTGCCCATA 61.440 63.158 0.00 0.00 40.16 2.74
2133 2653 1.754745 CCGTGCCTACTGCCCATAT 59.245 57.895 0.00 0.00 40.16 1.78
2134 2654 0.603707 CCGTGCCTACTGCCCATATG 60.604 60.000 0.00 0.00 40.16 1.78
2135 2655 0.106708 CGTGCCTACTGCCCATATGT 59.893 55.000 1.24 0.00 40.16 2.29
2136 2656 1.475034 CGTGCCTACTGCCCATATGTT 60.475 52.381 1.24 0.00 40.16 2.71
2139 2659 2.774809 TGCCTACTGCCCATATGTTGTA 59.225 45.455 1.24 0.00 40.16 2.41
2142 2662 4.039973 GCCTACTGCCCATATGTTGTAGTA 59.960 45.833 15.02 15.02 0.00 1.82
2145 2665 3.181454 ACTGCCCATATGTTGTAGTAGCC 60.181 47.826 10.23 0.00 0.00 3.93
2146 2666 3.045634 TGCCCATATGTTGTAGTAGCCT 58.954 45.455 1.24 0.00 0.00 4.58
2155 2675 3.072476 TGTTGTAGTAGCCTGCCTTTCTT 59.928 43.478 0.00 0.00 0.00 2.52
2156 2676 3.334583 TGTAGTAGCCTGCCTTTCTTG 57.665 47.619 0.00 0.00 0.00 3.02
2172 2692 0.677731 CTTGAGCATCGCCCAGGAAA 60.678 55.000 0.00 0.00 38.61 3.13
2177 2697 1.421268 AGCATCGCCCAGGAAATGATA 59.579 47.619 0.00 0.00 0.00 2.15
2184 2704 5.123227 TCGCCCAGGAAATGATAAAACTAG 58.877 41.667 0.00 0.00 0.00 2.57
2192 2712 6.884836 AGGAAATGATAAAACTAGAAAGGCGT 59.115 34.615 0.00 0.00 0.00 5.68
2193 2713 7.393515 AGGAAATGATAAAACTAGAAAGGCGTT 59.606 33.333 0.00 0.00 0.00 4.84
2194 2714 7.696872 GGAAATGATAAAACTAGAAAGGCGTTC 59.303 37.037 4.93 4.93 36.38 3.95
2197 2717 5.410439 TGATAAAACTAGAAAGGCGTTCACC 59.590 40.000 15.39 0.00 38.86 4.02
2199 2719 0.037605 ACTAGAAAGGCGTTCACCCG 60.038 55.000 15.39 3.31 38.86 5.28
2203 2723 0.953960 GAAAGGCGTTCACCCGTGAT 60.954 55.000 8.33 0.00 39.64 3.06
2217 2737 5.104693 TCACCCGTGATACCATTAGATTTGT 60.105 40.000 0.00 0.00 34.14 2.83
2219 2739 6.094881 CACCCGTGATACCATTAGATTTGTTT 59.905 38.462 0.00 0.00 0.00 2.83
2285 2808 2.507339 AAAAATGTGCACCGAAGTGG 57.493 45.000 15.69 0.00 44.69 4.00
2293 2816 1.072489 TGCACCGAAGTGGGATGTTTA 59.928 47.619 0.00 0.00 44.69 2.01
2298 2821 3.263425 ACCGAAGTGGGATGTTTATGAGT 59.737 43.478 0.00 0.00 44.64 3.41
2299 2822 4.261801 CCGAAGTGGGATGTTTATGAGTT 58.738 43.478 0.00 0.00 0.00 3.01
2300 2823 4.332819 CCGAAGTGGGATGTTTATGAGTTC 59.667 45.833 0.00 0.00 0.00 3.01
2301 2824 4.332819 CGAAGTGGGATGTTTATGAGTTCC 59.667 45.833 0.00 0.00 0.00 3.62
2325 2848 5.118971 CCATGAACCACAATTCGAAATGTTG 59.881 40.000 16.08 15.00 0.00 3.33
2334 2857 7.744715 CCACAATTCGAAATGTTGTAGTAGTTC 59.255 37.037 16.08 0.00 34.55 3.01
2343 2874 5.717078 TGTTGTAGTAGTTCGGTCATTCT 57.283 39.130 0.00 0.00 0.00 2.40
2361 2892 7.201875 GGTCATTCTAAAGTTGTTTCCCAGAAA 60.202 37.037 0.00 0.00 0.00 2.52
2363 2894 8.413229 TCATTCTAAAGTTGTTTCCCAGAAAAG 58.587 33.333 0.00 0.00 0.00 2.27
2372 2903 7.123547 AGTTGTTTCCCAGAAAAGTGTGATTTA 59.876 33.333 0.00 0.00 0.00 1.40
2377 2908 7.654022 TCCCAGAAAAGTGTGATTTAAAGTT 57.346 32.000 0.00 0.00 0.00 2.66
2378 2909 7.712797 TCCCAGAAAAGTGTGATTTAAAGTTC 58.287 34.615 0.00 0.00 0.00 3.01
2379 2910 6.923508 CCCAGAAAAGTGTGATTTAAAGTTCC 59.076 38.462 0.00 0.00 0.00 3.62
2380 2911 7.417342 CCCAGAAAAGTGTGATTTAAAGTTCCA 60.417 37.037 0.00 0.00 0.00 3.53
2381 2912 8.143835 CCAGAAAAGTGTGATTTAAAGTTCCAT 58.856 33.333 0.00 0.00 0.00 3.41
2382 2913 8.971321 CAGAAAAGTGTGATTTAAAGTTCCATG 58.029 33.333 0.00 0.00 0.00 3.66
2383 2914 8.912988 AGAAAAGTGTGATTTAAAGTTCCATGA 58.087 29.630 0.00 0.00 0.00 3.07
2384 2915 9.696917 GAAAAGTGTGATTTAAAGTTCCATGAT 57.303 29.630 0.00 0.00 0.00 2.45
2400 2931 8.424918 AGTTCCATGATAGTAAGTAGTTGGATG 58.575 37.037 0.00 0.00 32.43 3.51
2403 2936 9.429109 TCCATGATAGTAAGTAGTTGGATGTAA 57.571 33.333 0.00 0.00 0.00 2.41
2411 2944 9.959721 AGTAAGTAGTTGGATGTAAATGAACAT 57.040 29.630 0.00 0.00 42.75 2.71
2414 2947 7.538575 AGTAGTTGGATGTAAATGAACATTGC 58.461 34.615 0.69 0.00 40.17 3.56
2418 2951 8.530311 AGTTGGATGTAAATGAACATTGCAATA 58.470 29.630 12.53 0.00 40.17 1.90
2430 2963 5.002464 ACATTGCAATAATCTCTTGGCAC 57.998 39.130 12.53 0.00 0.00 5.01
2431 2964 4.708421 ACATTGCAATAATCTCTTGGCACT 59.292 37.500 12.53 0.00 0.00 4.40
2437 2970 0.694771 AATCTCTTGGCACTGCTCCA 59.305 50.000 0.00 0.00 0.00 3.86
2470 3003 8.901748 CATTTTTCGTACACCAAATACAGAAAG 58.098 33.333 0.00 0.00 32.28 2.62
2508 3042 4.009370 AGTGAAGAAAGTAAGCCCTGAC 57.991 45.455 0.00 0.00 0.00 3.51
2509 3043 3.391296 AGTGAAGAAAGTAAGCCCTGACA 59.609 43.478 0.00 0.00 0.00 3.58
2510 3044 4.042187 AGTGAAGAAAGTAAGCCCTGACAT 59.958 41.667 0.00 0.00 0.00 3.06
2511 3045 4.154918 GTGAAGAAAGTAAGCCCTGACATG 59.845 45.833 0.00 0.00 0.00 3.21
2512 3046 4.041567 TGAAGAAAGTAAGCCCTGACATGA 59.958 41.667 0.00 0.00 0.00 3.07
2513 3047 4.213564 AGAAAGTAAGCCCTGACATGAG 57.786 45.455 0.00 0.00 0.00 2.90
2514 3048 3.584848 AGAAAGTAAGCCCTGACATGAGT 59.415 43.478 0.00 0.00 0.00 3.41
2515 3049 4.777896 AGAAAGTAAGCCCTGACATGAGTA 59.222 41.667 0.00 0.00 0.00 2.59
2516 3050 5.426833 AGAAAGTAAGCCCTGACATGAGTAT 59.573 40.000 0.00 0.00 0.00 2.12
2517 3051 6.611642 AGAAAGTAAGCCCTGACATGAGTATA 59.388 38.462 0.00 0.00 0.00 1.47
2525 3059 4.934001 CCCTGACATGAGTATATGTGATGC 59.066 45.833 0.00 0.00 41.15 3.91
2535 3069 6.042437 TGAGTATATGTGATGCTCCATTCACT 59.958 38.462 4.86 0.00 34.51 3.41
2546 3080 6.832520 TGCTCCATTCACTTAAGCATTAAA 57.167 33.333 1.29 0.00 40.54 1.52
2551 3085 7.999679 TCCATTCACTTAAGCATTAAATCCAG 58.000 34.615 1.29 0.00 40.54 3.86
2552 3086 7.068593 TCCATTCACTTAAGCATTAAATCCAGG 59.931 37.037 1.29 0.00 40.54 4.45
2553 3087 5.835113 TCACTTAAGCATTAAATCCAGGC 57.165 39.130 1.29 0.00 40.54 4.85
2554 3088 5.260424 TCACTTAAGCATTAAATCCAGGCA 58.740 37.500 1.29 0.00 40.54 4.75
2555 3089 5.893255 TCACTTAAGCATTAAATCCAGGCAT 59.107 36.000 1.29 0.00 40.54 4.40
2556 3090 6.039717 TCACTTAAGCATTAAATCCAGGCATC 59.960 38.462 1.29 0.00 40.54 3.91
2557 3091 5.302823 ACTTAAGCATTAAATCCAGGCATCC 59.697 40.000 1.29 0.00 40.54 3.51
2558 3092 3.317455 AGCATTAAATCCAGGCATCCA 57.683 42.857 0.00 0.00 0.00 3.41
2559 3093 2.961062 AGCATTAAATCCAGGCATCCAC 59.039 45.455 0.00 0.00 0.00 4.02
2560 3094 2.694628 GCATTAAATCCAGGCATCCACA 59.305 45.455 0.00 0.00 0.00 4.17
2561 3095 3.132646 GCATTAAATCCAGGCATCCACAA 59.867 43.478 0.00 0.00 0.00 3.33
2562 3096 4.202284 GCATTAAATCCAGGCATCCACAAT 60.202 41.667 0.00 0.00 0.00 2.71
2563 3097 5.685599 GCATTAAATCCAGGCATCCACAATT 60.686 40.000 0.00 0.00 0.00 2.32
2564 3098 6.350906 CATTAAATCCAGGCATCCACAATTT 58.649 36.000 0.00 0.00 0.00 1.82
2565 3099 4.914177 AAATCCAGGCATCCACAATTTT 57.086 36.364 0.00 0.00 0.00 1.82
2566 3100 4.476628 AATCCAGGCATCCACAATTTTC 57.523 40.909 0.00 0.00 0.00 2.29
2567 3101 3.173953 TCCAGGCATCCACAATTTTCT 57.826 42.857 0.00 0.00 0.00 2.52
2568 3102 2.827322 TCCAGGCATCCACAATTTTCTG 59.173 45.455 0.00 0.00 0.00 3.02
2569 3103 2.613691 CAGGCATCCACAATTTTCTGC 58.386 47.619 0.00 0.00 0.00 4.26
2570 3104 2.028839 CAGGCATCCACAATTTTCTGCA 60.029 45.455 0.00 0.00 0.00 4.41
2571 3105 2.633967 AGGCATCCACAATTTTCTGCAA 59.366 40.909 0.00 0.00 0.00 4.08
2572 3106 3.262405 AGGCATCCACAATTTTCTGCAAT 59.738 39.130 0.00 0.00 0.00 3.56
2573 3107 4.467082 AGGCATCCACAATTTTCTGCAATA 59.533 37.500 0.00 0.00 0.00 1.90
2574 3108 4.567959 GGCATCCACAATTTTCTGCAATAC 59.432 41.667 0.00 0.00 0.00 1.89
2575 3109 4.266029 GCATCCACAATTTTCTGCAATACG 59.734 41.667 0.00 0.00 0.00 3.06
2576 3110 5.639757 CATCCACAATTTTCTGCAATACGA 58.360 37.500 0.00 0.00 0.00 3.43
2577 3111 5.697473 TCCACAATTTTCTGCAATACGAA 57.303 34.783 0.00 0.00 0.00 3.85
2578 3112 6.078202 TCCACAATTTTCTGCAATACGAAA 57.922 33.333 0.00 0.00 0.00 3.46
2579 3113 6.507900 TCCACAATTTTCTGCAATACGAAAA 58.492 32.000 12.34 12.34 41.62 2.29
2580 3114 6.980978 TCCACAATTTTCTGCAATACGAAAAA 59.019 30.769 13.55 3.46 41.00 1.94
2581 3115 7.655328 TCCACAATTTTCTGCAATACGAAAAAT 59.345 29.630 13.55 5.06 41.00 1.82
2582 3116 8.920665 CCACAATTTTCTGCAATACGAAAAATA 58.079 29.630 13.55 0.00 41.00 1.40
2593 3127 9.320406 TGCAATACGAAAAATAAAGTAACTTCG 57.680 29.630 0.00 0.00 40.96 3.79
2594 3128 8.782327 GCAATACGAAAAATAAAGTAACTTCGG 58.218 33.333 6.92 0.00 39.83 4.30
2595 3129 8.782327 CAATACGAAAAATAAAGTAACTTCGGC 58.218 33.333 6.92 0.00 39.83 5.54
2596 3130 6.549912 ACGAAAAATAAAGTAACTTCGGCT 57.450 33.333 6.92 0.00 39.83 5.52
2597 3131 6.962686 ACGAAAAATAAAGTAACTTCGGCTT 58.037 32.000 6.92 0.00 39.83 4.35
2598 3132 6.854381 ACGAAAAATAAAGTAACTTCGGCTTG 59.146 34.615 6.92 0.00 39.83 4.01
2599 3133 6.304683 CGAAAAATAAAGTAACTTCGGCTTGG 59.695 38.462 0.00 0.00 33.76 3.61
2600 3134 6.887626 AAAATAAAGTAACTTCGGCTTGGA 57.112 33.333 0.00 0.00 0.00 3.53
2601 3135 7.462571 AAAATAAAGTAACTTCGGCTTGGAT 57.537 32.000 0.00 0.00 0.00 3.41
2602 3136 7.462571 AAATAAAGTAACTTCGGCTTGGATT 57.537 32.000 0.00 0.00 0.00 3.01
2603 3137 6.679327 ATAAAGTAACTTCGGCTTGGATTC 57.321 37.500 0.00 0.00 0.00 2.52
2604 3138 3.983044 AGTAACTTCGGCTTGGATTCT 57.017 42.857 0.00 0.00 0.00 2.40
2605 3139 3.600388 AGTAACTTCGGCTTGGATTCTG 58.400 45.455 0.00 0.00 0.00 3.02
2606 3140 1.168714 AACTTCGGCTTGGATTCTGC 58.831 50.000 0.00 0.00 0.00 4.26
2607 3141 0.036732 ACTTCGGCTTGGATTCTGCA 59.963 50.000 0.00 0.00 0.00 4.41
2608 3142 1.340405 ACTTCGGCTTGGATTCTGCAT 60.340 47.619 0.00 0.00 0.00 3.96
2609 3143 1.332997 CTTCGGCTTGGATTCTGCATC 59.667 52.381 0.00 0.00 0.00 3.91
2610 3144 0.252761 TCGGCTTGGATTCTGCATCA 59.747 50.000 0.00 0.00 32.79 3.07
2611 3145 0.379669 CGGCTTGGATTCTGCATCAC 59.620 55.000 0.00 0.00 32.79 3.06
2612 3146 0.743097 GGCTTGGATTCTGCATCACC 59.257 55.000 0.00 0.00 32.79 4.02
2613 3147 1.466856 GCTTGGATTCTGCATCACCA 58.533 50.000 0.00 0.00 32.79 4.17
2614 3148 1.820519 GCTTGGATTCTGCATCACCAA 59.179 47.619 12.01 12.01 38.12 3.67
2615 3149 2.231964 GCTTGGATTCTGCATCACCAAA 59.768 45.455 13.07 2.42 39.57 3.28
2616 3150 3.118884 GCTTGGATTCTGCATCACCAAAT 60.119 43.478 13.07 0.00 39.57 2.32
2617 3151 4.430007 CTTGGATTCTGCATCACCAAATG 58.570 43.478 13.07 3.21 39.57 2.32
2618 3152 2.761767 TGGATTCTGCATCACCAAATGG 59.238 45.455 0.00 0.00 42.17 3.16
2636 3170 7.885297 CCAAATGGTATACCTACATGGAATTG 58.115 38.462 22.41 9.60 39.71 2.32
2637 3171 7.723616 CCAAATGGTATACCTACATGGAATTGA 59.276 37.037 22.41 0.00 39.71 2.57
2638 3172 8.567948 CAAATGGTATACCTACATGGAATTGAC 58.432 37.037 22.41 0.00 39.71 3.18
2639 3173 6.816616 TGGTATACCTACATGGAATTGACA 57.183 37.500 22.41 0.00 39.71 3.58
2640 3174 7.387265 TGGTATACCTACATGGAATTGACAT 57.613 36.000 22.41 0.00 39.71 3.06
2641 3175 8.499288 TGGTATACCTACATGGAATTGACATA 57.501 34.615 22.41 0.00 39.71 2.29
2642 3176 9.111519 TGGTATACCTACATGGAATTGACATAT 57.888 33.333 22.41 0.00 39.71 1.78
2643 3177 9.383519 GGTATACCTACATGGAATTGACATATG 57.616 37.037 15.09 0.00 39.71 1.78
2644 3178 9.944376 GTATACCTACATGGAATTGACATATGT 57.056 33.333 8.43 8.43 39.71 2.29
2645 3179 8.853077 ATACCTACATGGAATTGACATATGTG 57.147 34.615 14.43 0.00 39.71 3.21
2646 3180 6.662755 ACCTACATGGAATTGACATATGTGT 58.337 36.000 14.43 4.12 39.41 3.72
2647 3181 7.801104 ACCTACATGGAATTGACATATGTGTA 58.199 34.615 14.43 5.10 37.78 2.90
2648 3182 8.271458 ACCTACATGGAATTGACATATGTGTAA 58.729 33.333 14.43 8.75 37.78 2.41
2649 3183 9.288576 CCTACATGGAATTGACATATGTGTAAT 57.711 33.333 14.43 10.70 36.94 1.89
2661 3195 9.489084 TGACATATGTGTAATTAGTTATCTGCC 57.511 33.333 14.43 0.00 39.09 4.85
2662 3196 9.712305 GACATATGTGTAATTAGTTATCTGCCT 57.288 33.333 14.43 0.00 39.09 4.75
2666 3200 7.962964 TGTGTAATTAGTTATCTGCCTATGC 57.037 36.000 0.00 0.00 38.26 3.14
2667 3201 7.735917 TGTGTAATTAGTTATCTGCCTATGCT 58.264 34.615 0.00 0.00 38.71 3.79
2668 3202 8.210946 TGTGTAATTAGTTATCTGCCTATGCTT 58.789 33.333 0.00 0.00 38.71 3.91
2669 3203 8.713271 GTGTAATTAGTTATCTGCCTATGCTTC 58.287 37.037 0.00 0.00 38.71 3.86
2670 3204 8.651389 TGTAATTAGTTATCTGCCTATGCTTCT 58.349 33.333 0.00 0.00 38.71 2.85
2673 3207 7.597288 TTAGTTATCTGCCTATGCTTCTACA 57.403 36.000 0.00 0.00 38.71 2.74
2674 3208 6.678568 AGTTATCTGCCTATGCTTCTACAT 57.321 37.500 0.00 0.00 38.71 2.29
2675 3209 6.462500 AGTTATCTGCCTATGCTTCTACATG 58.538 40.000 0.00 0.00 38.71 3.21
2676 3210 6.268617 AGTTATCTGCCTATGCTTCTACATGA 59.731 38.462 0.00 0.00 38.71 3.07
2677 3211 5.557576 ATCTGCCTATGCTTCTACATGAA 57.442 39.130 0.00 0.00 38.71 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.385759 TGAGGCCAACTAAGGATTTATAGACA 59.614 38.462 5.01 0.00 0.00 3.41
13 14 6.831976 AGTGAGGCCAACTAAGGATTTATAG 58.168 40.000 5.01 0.00 0.00 1.31
15 16 5.717119 AGTGAGGCCAACTAAGGATTTAT 57.283 39.130 5.01 0.00 0.00 1.40
26 27 2.290641 CACACAACTTAGTGAGGCCAAC 59.709 50.000 5.01 2.27 42.05 3.77
37 38 4.212425 CCACGCAGTTAATCACACAACTTA 59.788 41.667 0.00 0.00 41.61 2.24
61 63 7.100458 AGAATAGGAATTGCATGTGGTTTAC 57.900 36.000 0.00 0.00 0.00 2.01
66 68 4.816385 ACGTAGAATAGGAATTGCATGTGG 59.184 41.667 0.00 0.00 0.00 4.17
89 91 7.172532 GTGTTATAGTGACAGTTCCACAATGAA 59.827 37.037 0.00 0.00 37.01 2.57
102 106 3.825585 TGTGGGTACGTGTTATAGTGACA 59.174 43.478 0.00 0.00 0.00 3.58
126 130 4.332637 CATAGGCCCATTGCGCGC 62.333 66.667 27.26 27.26 42.61 6.86
133 137 1.645402 AAACCGCTCCATAGGCCCAT 61.645 55.000 0.00 0.00 0.00 4.00
172 178 3.222603 GAAAGAGGGAAGAAAAGTGGCA 58.777 45.455 0.00 0.00 0.00 4.92
293 299 2.887337 AGCAGTGTTTTGGAAAAACGG 58.113 42.857 10.15 4.87 33.05 4.44
323 329 9.669353 CTTATGCTTAATAAATGTCCATGTGTC 57.331 33.333 0.00 0.00 30.24 3.67
353 359 9.332502 TCGCCTTATATGCTTAATAAAAGTTCA 57.667 29.630 0.00 0.00 0.00 3.18
495 502 7.496591 CCCTTGCTGCAACATAAATATTTGATT 59.503 33.333 11.69 0.00 0.00 2.57
507 514 1.636148 ATGTTCCCTTGCTGCAACAT 58.364 45.000 11.69 10.86 35.16 2.71
508 515 1.412079 AATGTTCCCTTGCTGCAACA 58.588 45.000 11.69 8.81 33.42 3.33
574 581 6.915300 TCAGACGTAAACAAATGTGGAAAATG 59.085 34.615 0.00 0.00 0.00 2.32
582 589 4.879545 ACCAGTTCAGACGTAAACAAATGT 59.120 37.500 9.71 0.00 0.00 2.71
726 762 1.488390 AAGTAGCATGGGCCAAATGG 58.512 50.000 11.89 1.36 42.56 3.16
727 763 2.234414 ACAAAGTAGCATGGGCCAAATG 59.766 45.455 11.89 6.53 42.56 2.32
728 764 2.234414 CACAAAGTAGCATGGGCCAAAT 59.766 45.455 11.89 1.33 42.56 2.32
729 765 1.617850 CACAAAGTAGCATGGGCCAAA 59.382 47.619 11.89 0.00 42.56 3.28
730 766 1.255882 CACAAAGTAGCATGGGCCAA 58.744 50.000 11.89 0.00 42.56 4.52
731 767 0.611618 CCACAAAGTAGCATGGGCCA 60.612 55.000 9.61 9.61 42.56 5.36
732 768 0.611896 ACCACAAAGTAGCATGGGCC 60.612 55.000 0.00 0.00 42.56 5.80
733 769 1.067635 CAACCACAAAGTAGCATGGGC 60.068 52.381 0.00 0.00 36.47 5.36
734 770 1.545582 CCAACCACAAAGTAGCATGGG 59.454 52.381 0.00 0.00 36.47 4.00
735 771 1.545582 CCCAACCACAAAGTAGCATGG 59.454 52.381 0.00 0.00 38.26 3.66
736 772 1.067635 GCCCAACCACAAAGTAGCATG 60.068 52.381 0.00 0.00 0.00 4.06
737 773 1.256812 GCCCAACCACAAAGTAGCAT 58.743 50.000 0.00 0.00 0.00 3.79
738 774 0.825840 GGCCCAACCACAAAGTAGCA 60.826 55.000 0.00 0.00 38.86 3.49
739 775 0.539669 AGGCCCAACCACAAAGTAGC 60.540 55.000 0.00 0.00 43.14 3.58
740 776 1.613437 CAAGGCCCAACCACAAAGTAG 59.387 52.381 0.00 0.00 43.14 2.57
741 777 1.698506 CAAGGCCCAACCACAAAGTA 58.301 50.000 0.00 0.00 43.14 2.24
742 778 1.048160 CCAAGGCCCAACCACAAAGT 61.048 55.000 0.00 0.00 43.14 2.66
743 779 0.758685 TCCAAGGCCCAACCACAAAG 60.759 55.000 0.00 0.00 43.14 2.77
744 780 0.758685 CTCCAAGGCCCAACCACAAA 60.759 55.000 0.00 0.00 43.14 2.83
745 781 1.152567 CTCCAAGGCCCAACCACAA 60.153 57.895 0.00 0.00 43.14 3.33
746 782 2.520458 CTCCAAGGCCCAACCACA 59.480 61.111 0.00 0.00 43.14 4.17
747 783 2.991540 GCTCCAAGGCCCAACCAC 60.992 66.667 0.00 0.00 43.14 4.16
748 784 3.185203 AGCTCCAAGGCCCAACCA 61.185 61.111 0.00 0.00 43.14 3.67
749 785 2.361737 GAGCTCCAAGGCCCAACC 60.362 66.667 0.87 0.00 39.61 3.77
750 786 2.747855 CGAGCTCCAAGGCCCAAC 60.748 66.667 8.47 0.00 0.00 3.77
751 787 2.927856 TCGAGCTCCAAGGCCCAA 60.928 61.111 8.47 0.00 0.00 4.12
752 788 3.393970 CTCGAGCTCCAAGGCCCA 61.394 66.667 8.47 0.00 0.00 5.36
753 789 2.585791 CTTCTCGAGCTCCAAGGCCC 62.586 65.000 7.81 0.00 0.00 5.80
776 812 2.017668 TTTTTGAGGGGCCAGGCTGA 62.018 55.000 17.94 0.00 0.00 4.26
794 850 7.201600 CCATCGAGTTCCATTTTGTTTTTGTTT 60.202 33.333 0.00 0.00 0.00 2.83
797 853 5.333263 GCCATCGAGTTCCATTTTGTTTTTG 60.333 40.000 0.00 0.00 0.00 2.44
803 859 1.737236 TCGCCATCGAGTTCCATTTTG 59.263 47.619 0.00 0.00 40.21 2.44
805 861 1.369625 GTCGCCATCGAGTTCCATTT 58.630 50.000 0.00 0.00 46.46 2.32
806 862 0.806102 CGTCGCCATCGAGTTCCATT 60.806 55.000 0.00 0.00 46.46 3.16
807 863 1.226974 CGTCGCCATCGAGTTCCAT 60.227 57.895 0.00 0.00 46.46 3.41
808 864 2.149803 AACGTCGCCATCGAGTTCCA 62.150 55.000 0.00 0.00 46.46 3.53
809 865 1.445582 AACGTCGCCATCGAGTTCC 60.446 57.895 0.00 0.00 46.46 3.62
810 866 0.731514 TCAACGTCGCCATCGAGTTC 60.732 55.000 0.00 0.00 46.46 3.01
811 867 0.108804 ATCAACGTCGCCATCGAGTT 60.109 50.000 0.00 0.00 46.46 3.01
812 868 0.108804 AATCAACGTCGCCATCGAGT 60.109 50.000 0.00 0.00 46.46 4.18
813 869 0.572590 GAATCAACGTCGCCATCGAG 59.427 55.000 0.00 0.00 46.46 4.04
814 870 0.172578 AGAATCAACGTCGCCATCGA 59.827 50.000 0.00 0.00 43.28 3.59
815 871 0.298707 CAGAATCAACGTCGCCATCG 59.701 55.000 0.00 0.00 0.00 3.84
816 872 0.026803 GCAGAATCAACGTCGCCATC 59.973 55.000 0.00 0.00 0.00 3.51
817 873 0.391661 AGCAGAATCAACGTCGCCAT 60.392 50.000 0.00 0.00 0.00 4.40
818 874 0.602638 AAGCAGAATCAACGTCGCCA 60.603 50.000 0.00 0.00 0.00 5.69
819 875 0.095417 GAAGCAGAATCAACGTCGCC 59.905 55.000 0.00 0.00 0.00 5.54
820 876 0.095417 GGAAGCAGAATCAACGTCGC 59.905 55.000 0.00 0.00 0.00 5.19
821 877 0.366871 CGGAAGCAGAATCAACGTCG 59.633 55.000 0.00 0.00 0.00 5.12
822 878 1.710013 TCGGAAGCAGAATCAACGTC 58.290 50.000 0.00 0.00 0.00 4.34
823 879 2.386661 ATCGGAAGCAGAATCAACGT 57.613 45.000 0.00 0.00 0.00 3.99
824 880 2.030946 GGAATCGGAAGCAGAATCAACG 59.969 50.000 0.00 0.00 0.00 4.10
825 881 2.030946 CGGAATCGGAAGCAGAATCAAC 59.969 50.000 0.00 0.00 0.00 3.18
826 882 2.093711 TCGGAATCGGAAGCAGAATCAA 60.094 45.455 0.00 0.00 36.95 2.57
827 883 1.480545 TCGGAATCGGAAGCAGAATCA 59.519 47.619 0.00 0.00 36.95 2.57
828 884 1.861575 GTCGGAATCGGAAGCAGAATC 59.138 52.381 0.00 0.00 36.95 2.52
829 885 1.207089 TGTCGGAATCGGAAGCAGAAT 59.793 47.619 0.00 0.00 36.95 2.40
830 886 0.606096 TGTCGGAATCGGAAGCAGAA 59.394 50.000 0.00 0.00 36.95 3.02
831 887 0.173481 CTGTCGGAATCGGAAGCAGA 59.827 55.000 3.42 0.00 36.95 4.26
832 888 0.807667 CCTGTCGGAATCGGAAGCAG 60.808 60.000 0.00 0.00 36.95 4.24
833 889 1.218047 CCTGTCGGAATCGGAAGCA 59.782 57.895 0.00 0.00 36.95 3.91
845 901 2.661537 TGTTGCTGTCGCCTGTCG 60.662 61.111 0.00 0.00 40.15 4.35
846 902 1.287730 CTCTGTTGCTGTCGCCTGTC 61.288 60.000 0.00 0.00 34.43 3.51
847 903 1.301244 CTCTGTTGCTGTCGCCTGT 60.301 57.895 0.00 0.00 34.43 4.00
848 904 0.601046 TTCTCTGTTGCTGTCGCCTG 60.601 55.000 0.00 0.00 34.43 4.85
849 905 0.320247 CTTCTCTGTTGCTGTCGCCT 60.320 55.000 0.00 0.00 34.43 5.52
850 906 1.905922 GCTTCTCTGTTGCTGTCGCC 61.906 60.000 0.00 0.00 34.43 5.54
851 907 1.495069 GCTTCTCTGTTGCTGTCGC 59.505 57.895 0.00 0.00 0.00 5.19
862 918 1.999071 CTAGCGCAGTCGGCTTCTCT 61.999 60.000 11.47 0.00 41.80 3.10
917 973 1.227497 CTTCAGCCTGGATCTCGCC 60.227 63.158 0.00 0.00 0.00 5.54
918 974 0.176680 TTCTTCAGCCTGGATCTCGC 59.823 55.000 0.00 0.00 0.00 5.03
919 975 1.205655 TGTTCTTCAGCCTGGATCTCG 59.794 52.381 0.00 0.00 0.00 4.04
920 976 3.269178 CTTGTTCTTCAGCCTGGATCTC 58.731 50.000 0.00 0.00 0.00 2.75
921 977 2.617532 GCTTGTTCTTCAGCCTGGATCT 60.618 50.000 0.00 0.00 0.00 2.75
922 978 1.742268 GCTTGTTCTTCAGCCTGGATC 59.258 52.381 0.00 0.00 0.00 3.36
923 979 1.615384 GGCTTGTTCTTCAGCCTGGAT 60.615 52.381 0.00 0.00 43.58 3.41
924 980 0.250901 GGCTTGTTCTTCAGCCTGGA 60.251 55.000 0.00 0.00 43.58 3.86
925 981 2.261215 GGCTTGTTCTTCAGCCTGG 58.739 57.895 2.81 0.00 43.58 4.45
929 985 2.287849 GGTTTGAGGCTTGTTCTTCAGC 60.288 50.000 0.00 0.00 0.00 4.26
930 986 2.294512 GGGTTTGAGGCTTGTTCTTCAG 59.705 50.000 0.00 0.00 0.00 3.02
972 1028 1.060698 GGAATTGTACGTCAGCTTCGC 59.939 52.381 0.00 0.00 0.00 4.70
989 1045 4.041762 GGGCCATCACGGGTGGAA 62.042 66.667 4.39 0.00 39.12 3.53
1009 1073 4.000988 ACGTGATCTGTGGTGGAATTAAC 58.999 43.478 0.00 0.00 0.00 2.01
1081 1145 0.304705 GTTGAGTGACCTTGTGCGTG 59.695 55.000 0.00 0.00 0.00 5.34
1093 1157 2.069273 GTCAAGATCGGTGGTTGAGTG 58.931 52.381 0.00 0.00 30.94 3.51
1103 1167 2.892425 GCAGGGCGTCAAGATCGG 60.892 66.667 0.00 0.00 0.00 4.18
1120 1184 1.256361 TGCTCCTCTGACAGCTCCAG 61.256 60.000 0.00 6.35 36.53 3.86
1121 1185 1.228988 TGCTCCTCTGACAGCTCCA 60.229 57.895 0.00 0.00 36.53 3.86
1122 1186 1.516892 CTGCTCCTCTGACAGCTCC 59.483 63.158 0.00 0.00 36.53 4.70
1123 1187 0.969917 TCCTGCTCCTCTGACAGCTC 60.970 60.000 0.00 0.00 36.53 4.09
1124 1188 0.543883 TTCCTGCTCCTCTGACAGCT 60.544 55.000 0.00 0.00 36.53 4.24
1131 1195 3.182887 TCTTCTTCTTCCTGCTCCTCT 57.817 47.619 0.00 0.00 0.00 3.69
1132 1196 3.513515 TCTTCTTCTTCTTCCTGCTCCTC 59.486 47.826 0.00 0.00 0.00 3.71
1133 1197 3.515562 TCTTCTTCTTCTTCCTGCTCCT 58.484 45.455 0.00 0.00 0.00 3.69
1153 1217 5.931724 CCTCCAACTCTTCTTCTTCTTCTTC 59.068 44.000 0.00 0.00 0.00 2.87
1154 1218 5.744594 GCCTCCAACTCTTCTTCTTCTTCTT 60.745 44.000 0.00 0.00 0.00 2.52
1155 1219 4.262851 GCCTCCAACTCTTCTTCTTCTTCT 60.263 45.833 0.00 0.00 0.00 2.85
1221 1714 2.042537 TCATCGAGGGCTGCCTCT 60.043 61.111 19.68 13.85 34.91 3.69
1223 1716 0.687757 TAACTCATCGAGGGCTGCCT 60.688 55.000 19.68 4.34 33.35 4.75
1236 1729 0.766131 TTTTCCGGGCCAGTAACTCA 59.234 50.000 4.39 0.00 0.00 3.41
1243 1736 2.751837 GCTCCTTTTCCGGGCCAG 60.752 66.667 4.39 0.00 0.00 4.85
1245 1738 2.282887 TTGCTCCTTTTCCGGGCC 60.283 61.111 0.00 0.00 0.00 5.80
1251 1744 0.961753 CACCACCCTTGCTCCTTTTC 59.038 55.000 0.00 0.00 0.00 2.29
1254 1747 0.038744 CATCACCACCCTTGCTCCTT 59.961 55.000 0.00 0.00 0.00 3.36
1256 1749 0.251341 AACATCACCACCCTTGCTCC 60.251 55.000 0.00 0.00 0.00 4.70
1265 1758 4.944048 AGCCTTTTGTTTAACATCACCAC 58.056 39.130 0.00 0.00 0.00 4.16
1274 1767 2.230266 GCCATCCGAGCCTTTTGTTTAA 59.770 45.455 0.00 0.00 0.00 1.52
1280 1773 0.678048 GTCTGCCATCCGAGCCTTTT 60.678 55.000 0.00 0.00 0.00 2.27
1281 1774 1.078143 GTCTGCCATCCGAGCCTTT 60.078 57.895 0.00 0.00 0.00 3.11
1284 1777 4.899239 CCGTCTGCCATCCGAGCC 62.899 72.222 0.00 0.00 0.00 4.70
1286 1779 4.227134 CCCCGTCTGCCATCCGAG 62.227 72.222 0.00 0.00 0.00 4.63
1323 1816 2.887152 GCCAAGCTCTTTCCTTTTGAGA 59.113 45.455 0.00 0.00 0.00 3.27
1333 1826 2.345760 CCATGCCGCCAAGCTCTTT 61.346 57.895 0.00 0.00 0.00 2.52
1334 1827 2.753043 CCATGCCGCCAAGCTCTT 60.753 61.111 0.00 0.00 0.00 2.85
1354 1847 2.740055 GCTCGTGCAGTCCAGGTG 60.740 66.667 4.26 0.00 39.41 4.00
1363 1856 0.953471 GTGTAATGGTGGCTCGTGCA 60.953 55.000 12.07 0.00 41.91 4.57
1367 1860 2.461110 GGCGTGTAATGGTGGCTCG 61.461 63.158 0.00 0.00 0.00 5.03
1386 1879 1.745264 CTTCTCCTCCATCCGCTCC 59.255 63.158 0.00 0.00 0.00 4.70
1387 1880 1.068921 GCTTCTCCTCCATCCGCTC 59.931 63.158 0.00 0.00 0.00 5.03
1407 1900 2.413437 CTATCTCCTCGTGCAGCCGG 62.413 65.000 0.00 0.00 0.00 6.13
1417 1910 3.118261 TGGCAAATGACCACTATCTCCTC 60.118 47.826 0.00 0.00 30.29 3.71
1419 1912 3.281727 TGGCAAATGACCACTATCTCC 57.718 47.619 0.00 0.00 30.29 3.71
1423 1916 5.163622 CGATCTTTTGGCAAATGACCACTAT 60.164 40.000 25.17 12.30 36.76 2.12
1424 1917 4.155826 CGATCTTTTGGCAAATGACCACTA 59.844 41.667 25.17 7.66 36.76 2.74
1434 1927 0.787787 CGTCGTCGATCTTTTGGCAA 59.212 50.000 0.00 0.00 39.71 4.52
1439 1932 4.092771 TCAATCTCGTCGTCGATCTTTT 57.907 40.909 5.00 0.00 45.21 2.27
1440 1933 3.487711 CCTCAATCTCGTCGTCGATCTTT 60.488 47.826 5.00 0.00 45.21 2.52
1441 1934 2.032302 CCTCAATCTCGTCGTCGATCTT 59.968 50.000 5.00 0.00 45.21 2.40
1446 1939 0.590230 GCTCCTCAATCTCGTCGTCG 60.590 60.000 0.00 0.00 38.55 5.12
1452 1945 1.591059 CTGGCGCTCCTCAATCTCG 60.591 63.158 7.64 0.00 0.00 4.04
1464 1957 4.575973 ATGATCTGGGCCTGGCGC 62.576 66.667 27.02 27.02 41.94 6.53
1484 1977 0.031994 GCCCTTCTCGCTCAGATCTC 59.968 60.000 0.00 0.00 0.00 2.75
1489 1982 1.064946 CGTAGCCCTTCTCGCTCAG 59.935 63.158 0.00 0.00 37.79 3.35
1515 2008 1.901085 GGCCAGGTAGTCCTCACTG 59.099 63.158 0.00 0.00 43.07 3.66
1516 2009 1.682684 CGGCCAGGTAGTCCTCACT 60.683 63.158 2.24 0.00 43.07 3.41
1517 2010 1.681327 TCGGCCAGGTAGTCCTCAC 60.681 63.158 2.24 0.00 43.07 3.51
1518 2011 1.681327 GTCGGCCAGGTAGTCCTCA 60.681 63.158 2.24 0.00 43.07 3.86
1525 2024 3.129502 CTCGTCGTCGGCCAGGTA 61.130 66.667 2.24 0.00 37.69 3.08
1533 2032 1.058590 CGTTGAACTCCTCGTCGTCG 61.059 60.000 0.00 0.00 38.55 5.12
1536 2035 0.237761 ACTCGTTGAACTCCTCGTCG 59.762 55.000 0.00 0.00 0.00 5.12
1546 2045 6.816640 CAGTATATCCTTTCCAACTCGTTGAA 59.183 38.462 11.15 1.89 42.93 2.69
1557 2056 3.262151 GGCTCTCCCAGTATATCCTTTCC 59.738 52.174 0.00 0.00 0.00 3.13
1567 2066 3.230608 CCATGAGGCTCTCCCAGTA 57.769 57.895 16.72 0.00 35.39 2.74
1596 2095 0.248296 GTCTCTCGTCCATGCGTCTC 60.248 60.000 0.00 0.00 0.00 3.36
1606 2105 0.587737 CTCATGCGTCGTCTCTCGTC 60.588 60.000 0.00 0.00 40.80 4.20
1607 2106 1.019805 TCTCATGCGTCGTCTCTCGT 61.020 55.000 0.00 0.00 40.80 4.18
1620 2119 3.260483 GCGGCAGCGAGTCTCATG 61.260 66.667 0.00 0.00 0.00 3.07
1638 2137 0.246635 CAACCTCATCCTCCGTTCGT 59.753 55.000 0.00 0.00 0.00 3.85
1639 2138 0.530744 TCAACCTCATCCTCCGTTCG 59.469 55.000 0.00 0.00 0.00 3.95
1643 2142 0.462759 GCCTTCAACCTCATCCTCCG 60.463 60.000 0.00 0.00 0.00 4.63
1648 2147 2.087646 GGTGAAGCCTTCAACCTCATC 58.912 52.381 11.55 0.00 41.54 2.92
1649 2148 1.611673 CGGTGAAGCCTTCAACCTCAT 60.612 52.381 16.56 0.00 44.51 2.90
1650 2149 0.250295 CGGTGAAGCCTTCAACCTCA 60.250 55.000 16.56 0.00 44.51 3.86
1651 2150 0.250338 ACGGTGAAGCCTTCAACCTC 60.250 55.000 16.56 0.68 44.51 3.85
1652 2151 0.250338 GACGGTGAAGCCTTCAACCT 60.250 55.000 16.56 5.28 44.51 3.50
1653 2152 0.534203 TGACGGTGAAGCCTTCAACC 60.534 55.000 16.56 14.52 44.51 3.77
1654 2153 1.264288 CTTGACGGTGAAGCCTTCAAC 59.736 52.381 12.58 12.58 46.49 3.18
1656 2155 0.884704 GCTTGACGGTGAAGCCTTCA 60.885 55.000 19.72 2.24 42.85 3.02
1657 2156 1.869690 GCTTGACGGTGAAGCCTTC 59.130 57.895 19.72 0.00 40.03 3.46
1658 2157 4.065110 GCTTGACGGTGAAGCCTT 57.935 55.556 19.72 0.00 40.03 4.35
1661 2160 1.891919 TGTGGCTTGACGGTGAAGC 60.892 57.895 21.78 21.78 44.32 3.86
1662 2161 1.507141 GGTGTGGCTTGACGGTGAAG 61.507 60.000 2.77 2.77 0.00 3.02
1663 2162 1.525077 GGTGTGGCTTGACGGTGAA 60.525 57.895 0.00 0.00 0.00 3.18
1664 2163 2.050836 ATGGTGTGGCTTGACGGTGA 62.051 55.000 0.00 0.00 0.00 4.02
1665 2164 1.577328 GATGGTGTGGCTTGACGGTG 61.577 60.000 0.00 0.00 0.00 4.94
1666 2165 1.302511 GATGGTGTGGCTTGACGGT 60.303 57.895 0.00 0.00 0.00 4.83
1667 2166 0.606401 AAGATGGTGTGGCTTGACGG 60.606 55.000 0.00 0.00 0.00 4.79
1668 2167 0.518636 CAAGATGGTGTGGCTTGACG 59.481 55.000 0.00 0.00 41.03 4.35
1669 2168 1.896220 TCAAGATGGTGTGGCTTGAC 58.104 50.000 0.00 0.00 42.03 3.18
1671 2170 2.681848 GAGATCAAGATGGTGTGGCTTG 59.318 50.000 0.00 0.00 40.16 4.01
1672 2171 2.575279 AGAGATCAAGATGGTGTGGCTT 59.425 45.455 0.00 0.00 0.00 4.35
1673 2172 2.093075 CAGAGATCAAGATGGTGTGGCT 60.093 50.000 0.00 0.00 0.00 4.75
1691 2190 5.178096 TCTGGGCAATAATGTTTCTCAGA 57.822 39.130 0.00 0.00 0.00 3.27
1703 2202 5.188434 CAAGAGAAGTGATTCTGGGCAATA 58.812 41.667 0.00 0.00 0.00 1.90
1718 2225 5.358160 AGGAAATTAAATCCGGCAAGAGAAG 59.642 40.000 0.00 0.00 42.03 2.85
1724 2231 5.476091 AACAAGGAAATTAAATCCGGCAA 57.524 34.783 0.00 0.00 42.03 4.52
1730 2237 9.639601 CTAGGGAACAAACAAGGAAATTAAATC 57.360 33.333 0.00 0.00 0.00 2.17
1734 2241 8.417884 CAAACTAGGGAACAAACAAGGAAATTA 58.582 33.333 0.00 0.00 0.00 1.40
1736 2243 6.382859 ACAAACTAGGGAACAAACAAGGAAAT 59.617 34.615 0.00 0.00 0.00 2.17
1738 2245 5.126384 CACAAACTAGGGAACAAACAAGGAA 59.874 40.000 0.00 0.00 0.00 3.36
1740 2247 4.401202 ACACAAACTAGGGAACAAACAAGG 59.599 41.667 0.00 0.00 0.00 3.61
1741 2248 5.339990 CACACAAACTAGGGAACAAACAAG 58.660 41.667 0.00 0.00 0.00 3.16
1748 2256 2.501261 GGACCACACAAACTAGGGAAC 58.499 52.381 0.00 0.00 0.00 3.62
1752 2260 2.536761 TTCGGACCACACAAACTAGG 57.463 50.000 0.00 0.00 0.00 3.02
1753 2261 4.755123 AGAAATTCGGACCACACAAACTAG 59.245 41.667 0.00 0.00 0.00 2.57
1762 2270 2.007608 GGCTGTAGAAATTCGGACCAC 58.992 52.381 0.00 0.00 0.00 4.16
1780 2288 4.154195 CACATTAACAGAGTTGGTACTGGC 59.846 45.833 0.00 0.00 38.30 4.85
1782 2290 4.754618 TGCACATTAACAGAGTTGGTACTG 59.245 41.667 0.00 0.00 34.36 2.74
1786 2294 2.884639 GGTGCACATTAACAGAGTTGGT 59.115 45.455 20.43 0.00 0.00 3.67
1801 2309 7.042797 AGATAATGATAAAACATGGGTGCAC 57.957 36.000 8.80 8.80 0.00 4.57
1838 2350 9.222098 TGGATATGCATATCTGGAAAGAGATAT 57.778 33.333 34.47 6.88 43.56 1.63
1839 2351 8.481314 GTGGATATGCATATCTGGAAAGAGATA 58.519 37.037 34.47 12.34 38.90 1.98
1890 2402 7.015098 ACACCATGGAAATTGACATGTTTCTAA 59.985 33.333 21.47 0.00 42.15 2.10
1896 2408 6.189859 AGATACACCATGGAAATTGACATGT 58.810 36.000 21.47 11.37 42.15 3.21
1903 2415 5.079643 GGCCATAGATACACCATGGAAATT 58.920 41.667 21.47 0.00 41.53 1.82
1904 2416 4.666512 GGCCATAGATACACCATGGAAAT 58.333 43.478 21.47 8.38 41.53 2.17
1910 2422 1.729586 ACCGGCCATAGATACACCAT 58.270 50.000 0.00 0.00 0.00 3.55
1990 2502 7.331934 GCCCTCCTTGATTTTGAAAAAGAATAC 59.668 37.037 0.00 0.00 0.00 1.89
1991 2503 7.016072 TGCCCTCCTTGATTTTGAAAAAGAATA 59.984 33.333 0.00 0.00 0.00 1.75
1992 2504 6.183361 TGCCCTCCTTGATTTTGAAAAAGAAT 60.183 34.615 0.00 0.00 0.00 2.40
2001 2519 1.259609 TGCTGCCCTCCTTGATTTTG 58.740 50.000 0.00 0.00 0.00 2.44
2004 2522 0.627451 TCATGCTGCCCTCCTTGATT 59.373 50.000 0.00 0.00 0.00 2.57
2005 2523 0.183014 CTCATGCTGCCCTCCTTGAT 59.817 55.000 0.00 0.00 0.00 2.57
2006 2524 0.911045 TCTCATGCTGCCCTCCTTGA 60.911 55.000 0.00 0.00 0.00 3.02
2007 2525 0.747283 GTCTCATGCTGCCCTCCTTG 60.747 60.000 0.00 0.00 0.00 3.61
2010 2528 0.322816 TTTGTCTCATGCTGCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
2011 2529 1.093159 CTTTGTCTCATGCTGCCCTC 58.907 55.000 0.00 0.00 0.00 4.30
2018 2538 6.151691 TGCATAGTTTTTCTTTGTCTCATGC 58.848 36.000 0.00 0.00 36.48 4.06
2024 2544 7.168135 CCTGAACTTGCATAGTTTTTCTTTGTC 59.832 37.037 13.21 2.11 47.00 3.18
2030 2550 4.237724 GGCCTGAACTTGCATAGTTTTTC 58.762 43.478 13.21 4.76 47.00 2.29
2037 2557 3.931907 ATAGTGGCCTGAACTTGCATA 57.068 42.857 3.32 0.00 0.00 3.14
2038 2558 2.756760 CAATAGTGGCCTGAACTTGCAT 59.243 45.455 3.32 0.00 0.00 3.96
2054 2574 3.862267 CGAGGTTGTCTTGAGAGCAATAG 59.138 47.826 0.00 0.00 32.68 1.73
2055 2575 3.849911 CGAGGTTGTCTTGAGAGCAATA 58.150 45.455 0.00 0.00 32.68 1.90
2056 2576 2.693069 CGAGGTTGTCTTGAGAGCAAT 58.307 47.619 0.00 0.00 32.68 3.56
2057 2577 1.873903 GCGAGGTTGTCTTGAGAGCAA 60.874 52.381 0.00 0.00 0.00 3.91
2058 2578 0.319900 GCGAGGTTGTCTTGAGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
2059 2579 0.319900 TGCGAGGTTGTCTTGAGAGC 60.320 55.000 0.00 0.00 0.00 4.09
2060 2580 2.266554 GATGCGAGGTTGTCTTGAGAG 58.733 52.381 0.00 0.00 0.00 3.20
2061 2581 1.402852 CGATGCGAGGTTGTCTTGAGA 60.403 52.381 0.00 0.00 0.00 3.27
2062 2582 0.994995 CGATGCGAGGTTGTCTTGAG 59.005 55.000 0.00 0.00 0.00 3.02
2063 2583 0.389817 CCGATGCGAGGTTGTCTTGA 60.390 55.000 0.00 0.00 0.00 3.02
2064 2584 0.389817 TCCGATGCGAGGTTGTCTTG 60.390 55.000 0.00 0.00 0.00 3.02
2065 2585 0.389948 GTCCGATGCGAGGTTGTCTT 60.390 55.000 0.00 0.00 0.00 3.01
2066 2586 1.215647 GTCCGATGCGAGGTTGTCT 59.784 57.895 0.00 0.00 0.00 3.41
2067 2587 1.810030 GGTCCGATGCGAGGTTGTC 60.810 63.158 0.00 0.00 0.00 3.18
2068 2588 2.264794 GGTCCGATGCGAGGTTGT 59.735 61.111 0.00 0.00 0.00 3.32
2069 2589 2.511600 GGGTCCGATGCGAGGTTG 60.512 66.667 0.00 0.00 0.00 3.77
2070 2590 3.782443 GGGGTCCGATGCGAGGTT 61.782 66.667 0.00 0.00 0.00 3.50
2072 2592 3.781307 TTGGGGTCCGATGCGAGG 61.781 66.667 0.00 0.00 0.00 4.63
2073 2593 2.511600 GTTGGGGTCCGATGCGAG 60.512 66.667 0.00 0.00 0.00 5.03
2074 2594 4.090588 GGTTGGGGTCCGATGCGA 62.091 66.667 0.00 0.00 0.00 5.10
2075 2595 3.910914 TTGGTTGGGGTCCGATGCG 62.911 63.158 0.00 0.00 0.00 4.73
2076 2596 2.034999 TTGGTTGGGGTCCGATGC 59.965 61.111 0.00 0.00 0.00 3.91
2077 2597 1.677633 GGTTGGTTGGGGTCCGATG 60.678 63.158 0.00 0.00 0.00 3.84
2078 2598 2.761160 GGTTGGTTGGGGTCCGAT 59.239 61.111 0.00 0.00 0.00 4.18
2079 2599 3.572222 GGGTTGGTTGGGGTCCGA 61.572 66.667 0.00 0.00 0.00 4.55
2080 2600 3.860930 CTGGGTTGGTTGGGGTCCG 62.861 68.421 0.00 0.00 0.00 4.79
2081 2601 2.117423 CTGGGTTGGTTGGGGTCC 59.883 66.667 0.00 0.00 0.00 4.46
2082 2602 1.074951 CTCTGGGTTGGTTGGGGTC 59.925 63.158 0.00 0.00 0.00 4.46
2083 2603 0.776080 ATCTCTGGGTTGGTTGGGGT 60.776 55.000 0.00 0.00 0.00 4.95
2084 2604 1.295020 TATCTCTGGGTTGGTTGGGG 58.705 55.000 0.00 0.00 0.00 4.96
2085 2605 2.509548 TGATATCTCTGGGTTGGTTGGG 59.490 50.000 3.98 0.00 0.00 4.12
2086 2606 3.931907 TGATATCTCTGGGTTGGTTGG 57.068 47.619 3.98 0.00 0.00 3.77
2087 2607 3.567164 GCATGATATCTCTGGGTTGGTTG 59.433 47.826 3.98 0.00 0.00 3.77
2088 2608 3.745480 CGCATGATATCTCTGGGTTGGTT 60.745 47.826 3.98 0.00 0.00 3.67
2089 2609 2.224378 CGCATGATATCTCTGGGTTGGT 60.224 50.000 3.98 0.00 0.00 3.67
2090 2610 2.420642 CGCATGATATCTCTGGGTTGG 58.579 52.381 3.98 0.00 0.00 3.77
2091 2611 1.802960 GCGCATGATATCTCTGGGTTG 59.197 52.381 0.30 3.17 0.00 3.77
2092 2612 1.271054 GGCGCATGATATCTCTGGGTT 60.271 52.381 10.83 0.00 0.00 4.11
2093 2613 0.322975 GGCGCATGATATCTCTGGGT 59.677 55.000 10.83 0.00 0.00 4.51
2094 2614 0.322648 TGGCGCATGATATCTCTGGG 59.677 55.000 10.83 14.44 0.00 4.45
2095 2615 1.436600 GTGGCGCATGATATCTCTGG 58.563 55.000 10.83 0.00 0.00 3.86
2096 2616 1.436600 GGTGGCGCATGATATCTCTG 58.563 55.000 10.83 3.14 0.00 3.35
2097 2617 0.322975 GGGTGGCGCATGATATCTCT 59.677 55.000 10.83 0.00 0.00 3.10
2098 2618 1.016130 CGGGTGGCGCATGATATCTC 61.016 60.000 10.83 0.00 0.00 2.75
2099 2619 1.004560 CGGGTGGCGCATGATATCT 60.005 57.895 10.83 0.00 0.00 1.98
2100 2620 1.301716 ACGGGTGGCGCATGATATC 60.302 57.895 10.83 0.00 0.00 1.63
2101 2621 1.597854 CACGGGTGGCGCATGATAT 60.598 57.895 10.83 0.00 0.00 1.63
2102 2622 2.203001 CACGGGTGGCGCATGATA 60.203 61.111 10.83 0.00 0.00 2.15
2119 2639 2.348411 ACAACATATGGGCAGTAGGC 57.652 50.000 7.80 0.00 43.74 3.93
2120 2640 4.689612 ACTACAACATATGGGCAGTAGG 57.310 45.455 20.35 9.93 34.71 3.18
2121 2641 5.230942 GCTACTACAACATATGGGCAGTAG 58.769 45.833 21.40 21.40 39.99 2.57
2122 2642 4.039973 GGCTACTACAACATATGGGCAGTA 59.960 45.833 7.80 8.28 0.00 2.74
2123 2643 3.181454 GGCTACTACAACATATGGGCAGT 60.181 47.826 7.80 7.58 0.00 4.40
2124 2644 3.071602 AGGCTACTACAACATATGGGCAG 59.928 47.826 7.80 1.77 0.00 4.85
2125 2645 3.045634 AGGCTACTACAACATATGGGCA 58.954 45.455 7.80 0.00 0.00 5.36
2126 2646 3.403038 CAGGCTACTACAACATATGGGC 58.597 50.000 7.80 0.00 0.00 5.36
2127 2647 3.403038 GCAGGCTACTACAACATATGGG 58.597 50.000 7.80 1.27 0.00 4.00
2128 2648 3.071602 AGGCAGGCTACTACAACATATGG 59.928 47.826 7.80 0.00 0.00 2.74
2129 2649 4.342862 AGGCAGGCTACTACAACATATG 57.657 45.455 0.00 0.00 0.00 1.78
2130 2650 5.131142 AGAAAGGCAGGCTACTACAACATAT 59.869 40.000 0.00 0.00 0.00 1.78
2131 2651 4.469945 AGAAAGGCAGGCTACTACAACATA 59.530 41.667 0.00 0.00 0.00 2.29
2132 2652 3.264450 AGAAAGGCAGGCTACTACAACAT 59.736 43.478 0.00 0.00 0.00 2.71
2133 2653 2.637872 AGAAAGGCAGGCTACTACAACA 59.362 45.455 0.00 0.00 0.00 3.33
2134 2654 3.336138 AGAAAGGCAGGCTACTACAAC 57.664 47.619 0.00 0.00 0.00 3.32
2135 2655 3.326588 TCAAGAAAGGCAGGCTACTACAA 59.673 43.478 0.00 0.00 0.00 2.41
2136 2656 2.903784 TCAAGAAAGGCAGGCTACTACA 59.096 45.455 0.00 0.00 0.00 2.74
2139 2659 1.339535 GCTCAAGAAAGGCAGGCTACT 60.340 52.381 0.00 0.00 0.00 2.57
2142 2662 0.039326 ATGCTCAAGAAAGGCAGGCT 59.961 50.000 0.00 0.00 39.38 4.58
2145 2665 0.098376 GCGATGCTCAAGAAAGGCAG 59.902 55.000 0.00 0.00 39.38 4.85
2146 2666 1.308069 GGCGATGCTCAAGAAAGGCA 61.308 55.000 0.00 0.00 40.32 4.75
2155 2675 0.749091 CATTTCCTGGGCGATGCTCA 60.749 55.000 0.00 0.00 36.30 4.26
2156 2676 0.464373 TCATTTCCTGGGCGATGCTC 60.464 55.000 0.00 0.00 0.00 4.26
2172 2692 6.093633 GGTGAACGCCTTTCTAGTTTTATCAT 59.906 38.462 0.00 0.00 34.97 2.45
2177 2697 2.882761 GGGTGAACGCCTTTCTAGTTTT 59.117 45.455 4.41 0.00 34.97 2.43
2184 2704 0.953960 ATCACGGGTGAACGCCTTTC 60.954 55.000 5.50 0.00 43.58 2.62
2192 2712 5.623956 AATCTAATGGTATCACGGGTGAA 57.376 39.130 5.50 0.00 43.58 3.18
2193 2713 5.104693 ACAAATCTAATGGTATCACGGGTGA 60.105 40.000 3.69 3.69 44.59 4.02
2194 2714 5.123227 ACAAATCTAATGGTATCACGGGTG 58.877 41.667 0.00 0.00 0.00 4.61
2231 2754 9.988815 AGATCTAATGGTGTATGTGTAAAGATC 57.011 33.333 0.00 0.00 37.14 2.75
2232 2755 9.770097 CAGATCTAATGGTGTATGTGTAAAGAT 57.230 33.333 0.00 0.00 0.00 2.40
2235 2758 7.334858 TGCAGATCTAATGGTGTATGTGTAAA 58.665 34.615 0.00 0.00 0.00 2.01
2236 2759 6.883744 TGCAGATCTAATGGTGTATGTGTAA 58.116 36.000 0.00 0.00 0.00 2.41
2244 2767 6.403866 TTTGTTTTGCAGATCTAATGGTGT 57.596 33.333 0.00 0.00 0.00 4.16
2271 2794 1.302431 CATCCCACTTCGGTGCACA 60.302 57.895 20.43 0.00 44.05 4.57
2272 2795 0.889186 AACATCCCACTTCGGTGCAC 60.889 55.000 8.80 8.80 44.05 4.57
2273 2796 0.179004 AAACATCCCACTTCGGTGCA 60.179 50.000 0.00 0.00 44.05 4.57
2274 2797 1.816074 TAAACATCCCACTTCGGTGC 58.184 50.000 0.00 0.00 44.05 5.01
2275 2798 3.605634 TCATAAACATCCCACTTCGGTG 58.394 45.455 0.00 0.00 44.92 4.94
2276 2799 3.263425 ACTCATAAACATCCCACTTCGGT 59.737 43.478 0.00 0.00 0.00 4.69
2277 2800 3.873910 ACTCATAAACATCCCACTTCGG 58.126 45.455 0.00 0.00 0.00 4.30
2278 2801 4.332819 GGAACTCATAAACATCCCACTTCG 59.667 45.833 0.00 0.00 0.00 3.79
2279 2802 5.819825 GGAACTCATAAACATCCCACTTC 57.180 43.478 0.00 0.00 0.00 3.01
2298 2821 3.147553 TCGAATTGTGGTTCATGGGAA 57.852 42.857 0.00 0.00 0.00 3.97
2299 2822 2.869101 TCGAATTGTGGTTCATGGGA 57.131 45.000 0.00 0.00 0.00 4.37
2300 2823 3.932545 TTTCGAATTGTGGTTCATGGG 57.067 42.857 0.00 0.00 0.00 4.00
2301 2824 4.808558 ACATTTCGAATTGTGGTTCATGG 58.191 39.130 21.39 0.00 0.00 3.66
2316 2839 4.919168 TGACCGAACTACTACAACATTTCG 59.081 41.667 0.00 0.00 36.47 3.46
2325 2848 7.811713 ACAACTTTAGAATGACCGAACTACTAC 59.188 37.037 0.00 0.00 0.00 2.73
2334 2857 4.517453 TGGGAAACAACTTTAGAATGACCG 59.483 41.667 0.00 0.00 0.00 4.79
2343 2874 6.434652 TCACACTTTTCTGGGAAACAACTTTA 59.565 34.615 0.00 0.00 0.00 1.85
2361 2892 9.520515 ACTATCATGGAACTTTAAATCACACTT 57.479 29.630 0.00 0.00 0.00 3.16
2372 2903 8.822805 TCCAACTACTTACTATCATGGAACTTT 58.177 33.333 0.00 0.00 33.06 2.66
2377 2908 7.914427 ACATCCAACTACTTACTATCATGGA 57.086 36.000 0.00 0.00 39.79 3.41
2385 2916 9.959721 ATGTTCATTTACATCCAACTACTTACT 57.040 29.630 0.00 0.00 33.58 2.24
2403 2936 6.759827 GCCAAGAGATTATTGCAATGTTCATT 59.240 34.615 22.27 13.01 0.00 2.57
2407 2940 5.186409 AGTGCCAAGAGATTATTGCAATGTT 59.814 36.000 22.27 8.86 0.00 2.71
2411 2944 3.119388 GCAGTGCCAAGAGATTATTGCAA 60.119 43.478 2.85 0.00 0.00 4.08
2414 2947 3.314635 GGAGCAGTGCCAAGAGATTATTG 59.685 47.826 12.58 0.00 0.00 1.90
2418 2951 0.694771 TGGAGCAGTGCCAAGAGATT 59.305 50.000 12.58 0.00 31.13 2.40
2424 2957 1.538047 GAGATTTGGAGCAGTGCCAA 58.462 50.000 12.58 7.12 43.31 4.52
2430 2963 4.082571 ACGAAAAATGGAGATTTGGAGCAG 60.083 41.667 0.00 0.00 31.83 4.24
2431 2964 3.826157 ACGAAAAATGGAGATTTGGAGCA 59.174 39.130 0.00 0.00 31.83 4.26
2437 2970 6.642707 TTGGTGTACGAAAAATGGAGATTT 57.357 33.333 0.00 0.00 32.87 2.17
2470 3003 8.912787 TTCTTCACTTCATCTACTTCGTAATC 57.087 34.615 0.00 0.00 0.00 1.75
2508 3042 6.877322 TGAATGGAGCATCACATATACTCATG 59.123 38.462 0.00 0.00 36.25 3.07
2509 3043 6.877855 GTGAATGGAGCATCACATATACTCAT 59.122 38.462 1.30 0.00 36.25 2.90
2510 3044 6.042437 AGTGAATGGAGCATCACATATACTCA 59.958 38.462 8.43 0.00 36.25 3.41
2511 3045 6.462500 AGTGAATGGAGCATCACATATACTC 58.538 40.000 8.43 0.00 36.25 2.59
2512 3046 6.430962 AGTGAATGGAGCATCACATATACT 57.569 37.500 8.43 0.00 36.25 2.12
2513 3047 8.607441 TTAAGTGAATGGAGCATCACATATAC 57.393 34.615 8.43 0.00 36.25 1.47
2514 3048 7.388776 GCTTAAGTGAATGGAGCATCACATATA 59.611 37.037 4.02 0.00 36.25 0.86
2515 3049 6.206243 GCTTAAGTGAATGGAGCATCACATAT 59.794 38.462 4.02 0.00 36.25 1.78
2516 3050 5.528690 GCTTAAGTGAATGGAGCATCACATA 59.471 40.000 4.02 0.00 36.25 2.29
2517 3051 4.337555 GCTTAAGTGAATGGAGCATCACAT 59.662 41.667 4.02 0.00 36.25 3.21
2525 3059 7.999679 TGGATTTAATGCTTAAGTGAATGGAG 58.000 34.615 4.02 0.00 0.00 3.86
2535 3069 5.068987 GTGGATGCCTGGATTTAATGCTTAA 59.931 40.000 0.00 0.00 0.00 1.85
2546 3080 3.449737 CAGAAAATTGTGGATGCCTGGAT 59.550 43.478 0.00 0.00 0.00 3.41
2551 3085 2.747396 TGCAGAAAATTGTGGATGCC 57.253 45.000 0.00 0.00 32.77 4.40
2552 3086 4.266029 CGTATTGCAGAAAATTGTGGATGC 59.734 41.667 0.00 0.00 0.00 3.91
2553 3087 5.639757 TCGTATTGCAGAAAATTGTGGATG 58.360 37.500 0.00 0.00 0.00 3.51
2554 3088 5.895636 TCGTATTGCAGAAAATTGTGGAT 57.104 34.783 0.00 0.00 0.00 3.41
2555 3089 5.697473 TTCGTATTGCAGAAAATTGTGGA 57.303 34.783 0.00 0.00 0.00 4.02
2556 3090 6.761731 TTTTCGTATTGCAGAAAATTGTGG 57.238 33.333 7.32 0.00 40.22 4.17
2567 3101 9.320406 CGAAGTTACTTTATTTTTCGTATTGCA 57.680 29.630 0.00 0.00 34.43 4.08
2568 3102 8.782327 CCGAAGTTACTTTATTTTTCGTATTGC 58.218 33.333 0.00 0.00 36.59 3.56
2569 3103 8.782327 GCCGAAGTTACTTTATTTTTCGTATTG 58.218 33.333 0.00 0.00 36.59 1.90
2570 3104 8.724229 AGCCGAAGTTACTTTATTTTTCGTATT 58.276 29.630 0.00 0.00 36.59 1.89
2571 3105 8.260270 AGCCGAAGTTACTTTATTTTTCGTAT 57.740 30.769 0.00 0.00 36.59 3.06
2572 3106 7.656707 AGCCGAAGTTACTTTATTTTTCGTA 57.343 32.000 0.00 0.00 36.59 3.43
2573 3107 6.549912 AGCCGAAGTTACTTTATTTTTCGT 57.450 33.333 0.00 0.00 36.59 3.85
2574 3108 6.304683 CCAAGCCGAAGTTACTTTATTTTTCG 59.695 38.462 0.00 0.00 37.68 3.46
2575 3109 7.364970 TCCAAGCCGAAGTTACTTTATTTTTC 58.635 34.615 0.00 0.00 0.00 2.29
2576 3110 7.279750 TCCAAGCCGAAGTTACTTTATTTTT 57.720 32.000 0.00 0.00 0.00 1.94
2577 3111 6.887626 TCCAAGCCGAAGTTACTTTATTTT 57.112 33.333 0.00 0.00 0.00 1.82
2578 3112 7.393515 AGAATCCAAGCCGAAGTTACTTTATTT 59.606 33.333 0.00 0.00 0.00 1.40
2579 3113 6.884836 AGAATCCAAGCCGAAGTTACTTTATT 59.115 34.615 0.00 0.00 0.00 1.40
2580 3114 6.316390 CAGAATCCAAGCCGAAGTTACTTTAT 59.684 38.462 0.00 0.00 0.00 1.40
2581 3115 5.642063 CAGAATCCAAGCCGAAGTTACTTTA 59.358 40.000 0.00 0.00 0.00 1.85
2582 3116 4.455877 CAGAATCCAAGCCGAAGTTACTTT 59.544 41.667 0.00 0.00 0.00 2.66
2583 3117 4.003648 CAGAATCCAAGCCGAAGTTACTT 58.996 43.478 0.00 0.00 0.00 2.24
2584 3118 3.600388 CAGAATCCAAGCCGAAGTTACT 58.400 45.455 0.00 0.00 0.00 2.24
2585 3119 2.096013 GCAGAATCCAAGCCGAAGTTAC 59.904 50.000 0.00 0.00 0.00 2.50
2586 3120 2.290008 TGCAGAATCCAAGCCGAAGTTA 60.290 45.455 0.00 0.00 0.00 2.24
2587 3121 1.168714 GCAGAATCCAAGCCGAAGTT 58.831 50.000 0.00 0.00 0.00 2.66
2588 3122 0.036732 TGCAGAATCCAAGCCGAAGT 59.963 50.000 0.00 0.00 0.00 3.01
2589 3123 1.332997 GATGCAGAATCCAAGCCGAAG 59.667 52.381 0.00 0.00 0.00 3.79
2590 3124 1.339920 TGATGCAGAATCCAAGCCGAA 60.340 47.619 0.00 0.00 34.00 4.30
2591 3125 0.252761 TGATGCAGAATCCAAGCCGA 59.747 50.000 0.00 0.00 34.00 5.54
2592 3126 0.379669 GTGATGCAGAATCCAAGCCG 59.620 55.000 0.00 0.00 34.00 5.52
2593 3127 0.743097 GGTGATGCAGAATCCAAGCC 59.257 55.000 0.00 0.00 34.00 4.35
2594 3128 1.466856 TGGTGATGCAGAATCCAAGC 58.533 50.000 0.00 0.00 34.00 4.01
2595 3129 4.430007 CATTTGGTGATGCAGAATCCAAG 58.570 43.478 12.66 3.15 38.97 3.61
2596 3130 3.196039 CCATTTGGTGATGCAGAATCCAA 59.804 43.478 10.09 10.09 36.55 3.53
2597 3131 2.761767 CCATTTGGTGATGCAGAATCCA 59.238 45.455 0.00 0.00 34.00 3.41
2598 3132 3.447918 CCATTTGGTGATGCAGAATCC 57.552 47.619 0.00 0.00 34.00 3.01
2606 3140 7.691542 TCCATGTAGGTATACCATTTGGTGATG 60.692 40.741 23.87 12.32 43.36 3.07
2607 3141 6.331572 TCCATGTAGGTATACCATTTGGTGAT 59.668 38.462 23.87 2.30 43.36 3.06
2608 3142 5.668080 TCCATGTAGGTATACCATTTGGTGA 59.332 40.000 23.87 8.89 43.36 4.02
2609 3143 5.935945 TCCATGTAGGTATACCATTTGGTG 58.064 41.667 23.87 13.22 43.36 4.17
2610 3144 6.584471 TTCCATGTAGGTATACCATTTGGT 57.416 37.500 23.87 7.51 44.75 3.67
2611 3145 7.723616 TCAATTCCATGTAGGTATACCATTTGG 59.276 37.037 23.87 21.24 38.89 3.28
2612 3146 8.567948 GTCAATTCCATGTAGGTATACCATTTG 58.432 37.037 23.87 14.19 38.89 2.32
2613 3147 8.278639 TGTCAATTCCATGTAGGTATACCATTT 58.721 33.333 23.87 6.03 38.89 2.32
2614 3148 7.811282 TGTCAATTCCATGTAGGTATACCATT 58.189 34.615 23.87 9.06 38.89 3.16
2615 3149 7.387265 TGTCAATTCCATGTAGGTATACCAT 57.613 36.000 23.87 11.26 38.89 3.55
2616 3150 6.816616 TGTCAATTCCATGTAGGTATACCA 57.183 37.500 23.87 7.28 38.89 3.25
2617 3151 9.383519 CATATGTCAATTCCATGTAGGTATACC 57.616 37.037 14.54 14.54 39.02 2.73
2618 3152 9.944376 ACATATGTCAATTCCATGTAGGTATAC 57.056 33.333 1.41 0.00 39.02 1.47
2619 3153 9.942850 CACATATGTCAATTCCATGTAGGTATA 57.057 33.333 5.07 0.00 39.02 1.47
2620 3154 8.439971 ACACATATGTCAATTCCATGTAGGTAT 58.560 33.333 5.07 0.00 34.15 2.73
2621 3155 7.801104 ACACATATGTCAATTCCATGTAGGTA 58.199 34.615 5.07 0.00 34.15 3.08
2622 3156 6.662755 ACACATATGTCAATTCCATGTAGGT 58.337 36.000 5.07 0.00 34.15 3.08
2623 3157 8.675705 TTACACATATGTCAATTCCATGTAGG 57.324 34.615 5.07 0.00 40.48 3.18
2635 3169 9.489084 GGCAGATAACTAATTACACATATGTCA 57.511 33.333 5.07 0.00 40.48 3.58
2636 3170 9.712305 AGGCAGATAACTAATTACACATATGTC 57.288 33.333 5.07 0.00 40.48 3.06
2640 3174 9.653287 GCATAGGCAGATAACTAATTACACATA 57.347 33.333 0.00 0.00 40.72 2.29
2641 3175 8.378565 AGCATAGGCAGATAACTAATTACACAT 58.621 33.333 0.67 0.00 44.61 3.21
2642 3176 7.735917 AGCATAGGCAGATAACTAATTACACA 58.264 34.615 0.67 0.00 44.61 3.72
2643 3177 8.608844 AAGCATAGGCAGATAACTAATTACAC 57.391 34.615 0.67 0.00 44.61 2.90
2644 3178 8.651389 AGAAGCATAGGCAGATAACTAATTACA 58.349 33.333 0.67 0.00 44.61 2.41
2647 3181 8.651389 TGTAGAAGCATAGGCAGATAACTAATT 58.349 33.333 0.67 0.00 44.61 1.40
2648 3182 8.195165 TGTAGAAGCATAGGCAGATAACTAAT 57.805 34.615 0.67 0.00 44.61 1.73
2649 3183 7.597288 TGTAGAAGCATAGGCAGATAACTAA 57.403 36.000 0.67 0.00 44.61 2.24
2650 3184 7.451566 TCATGTAGAAGCATAGGCAGATAACTA 59.548 37.037 0.67 0.00 44.61 2.24
2651 3185 6.268617 TCATGTAGAAGCATAGGCAGATAACT 59.731 38.462 0.67 0.00 44.61 2.24
2652 3186 6.459066 TCATGTAGAAGCATAGGCAGATAAC 58.541 40.000 0.67 0.00 44.61 1.89
2653 3187 6.670695 TCATGTAGAAGCATAGGCAGATAA 57.329 37.500 0.67 0.00 44.61 1.75
2654 3188 6.670695 TTCATGTAGAAGCATAGGCAGATA 57.329 37.500 0.67 0.00 44.61 1.98
2655 3189 5.549347 CTTCATGTAGAAGCATAGGCAGAT 58.451 41.667 0.67 0.00 46.54 2.90
2656 3190 4.953667 CTTCATGTAGAAGCATAGGCAGA 58.046 43.478 0.67 0.00 46.54 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.