Multiple sequence alignment - TraesCS1B01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G291700 chr1B 100.000 4497 0 0 1 4497 509005677 509001181 0.000000e+00 8305.0
1 TraesCS1B01G291700 chr1B 98.507 67 1 0 2005 2071 626708006 626707940 7.900000e-23 119.0
2 TraesCS1B01G291700 chr1D 89.007 2065 104 48 1 2002 379585230 379583226 0.000000e+00 2442.0
3 TraesCS1B01G291700 chr1D 92.423 1597 90 18 2916 4497 379582282 379580702 0.000000e+00 2250.0
4 TraesCS1B01G291700 chr1D 86.912 489 30 7 2437 2893 379582958 379582472 6.670000e-143 518.0
5 TraesCS1B01G291700 chr1D 94.776 268 12 2 2119 2384 379583219 379582952 2.500000e-112 416.0
6 TraesCS1B01G291700 chr1A 86.748 2060 120 54 1 2003 480751839 480749876 0.000000e+00 2150.0
7 TraesCS1B01G291700 chr1A 87.030 1542 119 37 2697 4189 480748990 480747481 0.000000e+00 1664.0
8 TraesCS1B01G291700 chr1A 92.519 401 26 4 2279 2678 480749563 480749166 5.050000e-159 571.0
9 TraesCS1B01G291700 chr1A 88.095 126 14 1 43 168 480753657 480753533 1.010000e-31 148.0
10 TraesCS1B01G291700 chr1A 95.833 48 1 1 2068 2115 436426995 436426949 4.820000e-10 76.8
11 TraesCS1B01G291700 chr6A 95.178 477 23 0 3973 4449 60062133 60062609 0.000000e+00 754.0
12 TraesCS1B01G291700 chr6A 94.595 37 2 0 4461 4497 60062607 60062643 1.750000e-04 58.4
13 TraesCS1B01G291700 chr2B 95.178 477 23 0 3973 4449 668239595 668240071 0.000000e+00 754.0
14 TraesCS1B01G291700 chr2B 98.507 67 1 0 2005 2071 59764925 59764991 7.900000e-23 119.0
15 TraesCS1B01G291700 chr2B 95.833 48 1 1 2068 2115 40438001 40438047 4.820000e-10 76.8
16 TraesCS1B01G291700 chr2A 95.178 477 22 1 3973 4449 680892796 680893271 0.000000e+00 752.0
17 TraesCS1B01G291700 chr5A 94.549 477 26 0 3973 4449 102198240 102198716 0.000000e+00 737.0
18 TraesCS1B01G291700 chr5A 95.305 213 10 0 4237 4449 517848017 517847805 5.570000e-89 339.0
19 TraesCS1B01G291700 chr5A 97.297 37 1 0 4461 4497 102198714 102198750 3.760000e-06 63.9
20 TraesCS1B01G291700 chr5A 97.297 37 1 0 4461 4497 517847807 517847771 3.760000e-06 63.9
21 TraesCS1B01G291700 chr4A 94.549 477 25 1 3973 4449 603349377 603348902 0.000000e+00 736.0
22 TraesCS1B01G291700 chr4A 95.333 300 14 0 3973 4272 728412785 728412486 1.130000e-130 477.0
23 TraesCS1B01G291700 chr4A 94.697 132 7 0 4318 4449 728412487 728412356 5.900000e-49 206.0
24 TraesCS1B01G291700 chr4A 95.588 68 3 0 2005 2072 669583266 669583199 4.760000e-20 110.0
25 TraesCS1B01G291700 chr4A 92.308 52 4 0 2072 2123 16172542 16172491 1.730000e-09 75.0
26 TraesCS1B01G291700 chr4A 97.297 37 1 0 4461 4497 603348904 603348868 3.760000e-06 63.9
27 TraesCS1B01G291700 chr6B 94.340 477 26 1 3973 4449 104569020 104568545 0.000000e+00 730.0
28 TraesCS1B01G291700 chr6B 100.000 67 0 0 2005 2071 4124949 4124883 1.700000e-24 124.0
29 TraesCS1B01G291700 chr3A 94.130 477 28 0 3973 4449 459524725 459525201 0.000000e+00 726.0
30 TraesCS1B01G291700 chr3A 95.370 216 10 0 4234 4449 125406915 125407130 1.200000e-90 344.0
31 TraesCS1B01G291700 chr3A 93.981 216 13 0 4234 4449 237822468 237822683 1.210000e-85 327.0
32 TraesCS1B01G291700 chr3A 93.897 213 12 1 4237 4449 45642094 45641883 2.020000e-83 320.0
33 TraesCS1B01G291700 chr3A 95.477 199 9 0 3973 4171 593127117 593126919 7.260000e-83 318.0
34 TraesCS1B01G291700 chr3A 97.015 67 2 0 2005 2071 645412737 645412671 3.680000e-21 113.0
35 TraesCS1B01G291700 chr3A 97.297 37 1 0 4461 4497 125407128 125407164 3.760000e-06 63.9
36 TraesCS1B01G291700 chr3A 97.297 37 1 0 4461 4497 237822681 237822717 3.760000e-06 63.9
37 TraesCS1B01G291700 chr7B 93.994 333 19 1 4118 4449 656235752 656235420 1.870000e-138 503.0
38 TraesCS1B01G291700 chr7B 90.244 123 12 0 4118 4240 656270198 656270076 1.290000e-35 161.0
39 TraesCS1B01G291700 chr7B 88.073 109 12 1 2005 2112 527860865 527860757 1.310000e-25 128.0
40 TraesCS1B01G291700 chr7B 97.297 37 1 0 4461 4497 656235422 656235386 3.760000e-06 63.9
41 TraesCS1B01G291700 chr7A 97.382 191 5 0 3973 4163 20684219 20684409 4.340000e-85 326.0
42 TraesCS1B01G291700 chr7A 100.000 34 0 0 4416 4449 20684414 20684447 3.760000e-06 63.9
43 TraesCS1B01G291700 chr7A 97.297 37 1 0 4461 4497 20684445 20684481 3.760000e-06 63.9
44 TraesCS1B01G291700 chr5B 87.719 114 9 4 1999 2111 298537909 298537800 1.310000e-25 128.0
45 TraesCS1B01G291700 chr5B 95.714 70 3 0 3973 4042 676301558 676301489 3.680000e-21 113.0
46 TraesCS1B01G291700 chr5B 95.833 48 1 1 2068 2115 101418316 101418270 4.820000e-10 76.8
47 TraesCS1B01G291700 chr5B 87.719 57 7 0 4167 4223 676301484 676301428 2.900000e-07 67.6
48 TraesCS1B01G291700 chrUn 96.000 75 2 1 1998 2071 86906244 86906170 2.200000e-23 121.0
49 TraesCS1B01G291700 chrUn 95.833 48 1 1 2068 2115 94636300 94636254 4.820000e-10 76.8
50 TraesCS1B01G291700 chr4B 97.143 70 2 0 3973 4042 402225018 402224949 7.900000e-23 119.0
51 TraesCS1B01G291700 chr4B 94.231 52 3 0 4398 4449 84652223 84652172 3.730000e-11 80.5
52 TraesCS1B01G291700 chr4B 91.228 57 5 0 4167 4223 402224944 402224888 1.340000e-10 78.7
53 TraesCS1B01G291700 chr2D 92.593 81 4 2 1992 2071 525608961 525609040 1.020000e-21 115.0
54 TraesCS1B01G291700 chr2D 100.000 44 0 0 2072 2115 525609008 525608965 1.040000e-11 82.4
55 TraesCS1B01G291700 chr3B 91.525 59 4 1 2069 2127 825320978 825320921 3.730000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G291700 chr1B 509001181 509005677 4496 True 8305.00 8305 100.0000 1 4497 1 chr1B.!!$R1 4496
1 TraesCS1B01G291700 chr1D 379580702 379585230 4528 True 1406.50 2442 90.7795 1 4497 4 chr1D.!!$R1 4496
2 TraesCS1B01G291700 chr1A 480747481 480753657 6176 True 1133.25 2150 88.5980 1 4189 4 chr1A.!!$R2 4188
3 TraesCS1B01G291700 chr6A 60062133 60062643 510 False 406.20 754 94.8865 3973 4497 2 chr6A.!!$F1 524
4 TraesCS1B01G291700 chr5A 102198240 102198750 510 False 400.45 737 95.9230 3973 4497 2 chr5A.!!$F1 524
5 TraesCS1B01G291700 chr4A 603348868 603349377 509 True 399.95 736 95.9230 3973 4497 2 chr4A.!!$R3 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 2127 0.318762 GCGCCATAAACAAACCCCAA 59.681 50.0 0.00 0.00 0.00 4.12 F
1461 3364 0.100146 CTTGCCTAGGTACGTCGTCC 59.900 60.0 11.31 3.31 0.00 4.79 F
1495 3398 0.575859 CGATGTCGATTGCTGAGCAG 59.424 55.0 7.39 0.00 40.06 4.24 F
3173 5567 1.019278 AAATGCCGTCGCGAGTTGAT 61.019 50.0 10.24 0.00 38.08 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 3499 0.175760 CCAACTCACGGACCGATCAT 59.824 55.000 23.38 0.0 0.00 2.45 R
3236 5630 0.325933 TGCTCAGCTGCTGGTGTAAT 59.674 50.000 27.79 0.0 41.91 1.89 R
3383 5788 5.075670 CATGTCATGCAGTCTTAATCGAC 57.924 43.478 0.00 0.0 0.00 4.20 R
4406 6836 3.058639 GTGAGACATGTGCTTGAGGAAAC 60.059 47.826 1.15 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 1869 0.324285 CTGCTCTTCTTGACCCAGCT 59.676 55.000 0.00 0.00 0.00 4.24
166 1989 2.341911 CGCCGGCCCAAAACAAAT 59.658 55.556 23.46 0.00 0.00 2.32
167 1990 1.587054 CGCCGGCCCAAAACAAATA 59.413 52.632 23.46 0.00 0.00 1.40
168 1991 0.734597 CGCCGGCCCAAAACAAATAC 60.735 55.000 23.46 0.00 0.00 1.89
186 2013 5.991933 AATACCAGCAGATGATACGATCT 57.008 39.130 0.00 0.00 32.59 2.75
297 2127 0.318762 GCGCCATAAACAAACCCCAA 59.681 50.000 0.00 0.00 0.00 4.12
306 2136 2.124693 CAAACCCCAACACCGCACT 61.125 57.895 0.00 0.00 0.00 4.40
313 2143 2.496111 CCCAACACCGCACTAGTTTAA 58.504 47.619 0.00 0.00 0.00 1.52
332 2162 2.819595 CCGGCGAGGTCAACCATG 60.820 66.667 9.30 0.00 38.89 3.66
333 2163 3.499737 CGGCGAGGTCAACCATGC 61.500 66.667 0.00 4.65 38.89 4.06
385 2215 2.745968 GCCATCTCCCCCATTGTTTAA 58.254 47.619 0.00 0.00 0.00 1.52
442 2272 0.676151 GGAAGAAGTCAGCAGCCAGG 60.676 60.000 0.00 0.00 0.00 4.45
514 2361 2.300152 TGAGATCACGCTGAACTTTCCT 59.700 45.455 0.00 0.00 29.19 3.36
608 2456 2.741211 GTCCGGCGGAGGTTTGTC 60.741 66.667 31.98 12.23 29.39 3.18
661 2516 5.988287 AGGCTTCAATCAAAGGTTTTTCAA 58.012 33.333 0.00 0.00 0.00 2.69
684 2539 3.372206 CCGAGAAATTACTGCAACTGAGG 59.628 47.826 0.00 0.00 0.00 3.86
699 2554 2.031333 ACTGAGGAACTACGTCGTTGTC 60.031 50.000 10.51 7.45 41.55 3.18
769 2631 2.294078 CGTTCAAGCCTCCTCCCCT 61.294 63.158 0.00 0.00 0.00 4.79
770 2632 0.976073 CGTTCAAGCCTCCTCCCCTA 60.976 60.000 0.00 0.00 0.00 3.53
808 2670 8.815912 GTTCCATAGCCCCAATGATTAATTAAT 58.184 33.333 10.51 10.51 0.00 1.40
809 2671 8.971032 TCCATAGCCCCAATGATTAATTAATT 57.029 30.769 11.92 5.89 0.00 1.40
814 2676 7.666623 AGCCCCAATGATTAATTAATTAACCG 58.333 34.615 20.21 8.97 35.31 4.44
815 2677 6.871492 GCCCCAATGATTAATTAATTAACCGG 59.129 38.462 20.21 15.34 35.31 5.28
816 2678 7.382898 CCCCAATGATTAATTAATTAACCGGG 58.617 38.462 20.21 20.99 35.31 5.73
818 2680 8.643324 CCCAATGATTAATTAATTAACCGGGAA 58.357 33.333 20.21 0.00 35.31 3.97
828 2690 9.470399 AATTAATTAACCGGGAATTCTGTTAGT 57.530 29.630 17.15 5.57 0.00 2.24
829 2691 8.866970 TTAATTAACCGGGAATTCTGTTAGTT 57.133 30.769 17.15 18.12 0.00 2.24
830 2692 9.956640 TTAATTAACCGGGAATTCTGTTAGTTA 57.043 29.630 17.15 16.95 0.00 2.24
831 2693 7.854557 ATTAACCGGGAATTCTGTTAGTTAC 57.145 36.000 6.32 0.00 0.00 2.50
832 2694 4.212143 ACCGGGAATTCTGTTAGTTACC 57.788 45.455 6.32 0.00 0.00 2.85
834 2696 3.192466 CGGGAATTCTGTTAGTTACCGG 58.808 50.000 0.00 0.00 43.83 5.28
873 2755 1.225855 TGTCTGGCACGACACATTTC 58.774 50.000 13.41 0.00 37.08 2.17
888 2770 6.742264 CGACACATTTCGATTGATTGATTTCA 59.258 34.615 3.14 0.00 41.78 2.69
931 2821 2.092049 GGAACAATTATCCTTCCCGGGT 60.092 50.000 22.86 2.31 33.98 5.28
932 2822 3.626475 GGAACAATTATCCTTCCCGGGTT 60.626 47.826 22.86 1.59 33.98 4.11
952 2842 4.224370 GGTTAGTGTCCCATTTGGTCTCTA 59.776 45.833 0.00 0.00 34.77 2.43
1013 2903 2.806945 TTTAAGCCCATGTCCTCCTG 57.193 50.000 0.00 0.00 0.00 3.86
1025 2918 2.202987 CTCCTGCCTCGCCATCAC 60.203 66.667 0.00 0.00 0.00 3.06
1090 2993 2.696526 ACCACTACTTCTCTCCACCA 57.303 50.000 0.00 0.00 0.00 4.17
1099 3002 3.194542 ACTTCTCTCCACCATCTTCTTCG 59.805 47.826 0.00 0.00 0.00 3.79
1263 3166 2.049475 CTCGGCCTACTTCCGTCTCG 62.049 65.000 0.00 0.00 46.49 4.04
1378 3281 1.645034 CATGGATCGTGGTGACTGAC 58.355 55.000 0.00 0.00 0.00 3.51
1399 3302 2.221169 TGTGATTGAAGCGCAGAAAGT 58.779 42.857 11.47 0.00 0.00 2.66
1401 3304 2.224079 GTGATTGAAGCGCAGAAAGTCA 59.776 45.455 11.47 3.58 0.00 3.41
1402 3305 3.076621 TGATTGAAGCGCAGAAAGTCAT 58.923 40.909 11.47 0.00 0.00 3.06
1403 3306 3.125829 TGATTGAAGCGCAGAAAGTCATC 59.874 43.478 11.47 0.36 0.00 2.92
1404 3307 1.442769 TGAAGCGCAGAAAGTCATCC 58.557 50.000 11.47 0.00 0.00 3.51
1407 3310 1.446907 AGCGCAGAAAGTCATCCAAG 58.553 50.000 11.47 0.00 0.00 3.61
1408 3311 0.449388 GCGCAGAAAGTCATCCAAGG 59.551 55.000 0.30 0.00 0.00 3.61
1409 3312 1.089920 CGCAGAAAGTCATCCAAGGG 58.910 55.000 0.00 0.00 0.00 3.95
1410 3313 1.339055 CGCAGAAAGTCATCCAAGGGA 60.339 52.381 0.00 0.00 35.55 4.20
1411 3314 2.681976 CGCAGAAAGTCATCCAAGGGAT 60.682 50.000 0.00 0.00 44.21 3.85
1412 3315 3.432186 CGCAGAAAGTCATCCAAGGGATA 60.432 47.826 0.00 0.00 40.98 2.59
1413 3316 4.526970 GCAGAAAGTCATCCAAGGGATAA 58.473 43.478 0.00 0.00 40.98 1.75
1414 3317 5.136105 GCAGAAAGTCATCCAAGGGATAAT 58.864 41.667 0.00 0.00 40.98 1.28
1418 3321 8.213679 CAGAAAGTCATCCAAGGGATAATAAGA 58.786 37.037 0.00 0.00 40.98 2.10
1424 3327 8.966868 GTCATCCAAGGGATAATAAGAAAACAA 58.033 33.333 0.00 0.00 40.98 2.83
1428 3331 7.453126 TCCAAGGGATAATAAGAAAACAAAGCA 59.547 33.333 0.00 0.00 0.00 3.91
1461 3364 0.100146 CTTGCCTAGGTACGTCGTCC 59.900 60.000 11.31 3.31 0.00 4.79
1492 3395 3.667726 CAGATACGATGTCGATTGCTGAG 59.332 47.826 9.67 0.00 43.02 3.35
1493 3396 1.840181 TACGATGTCGATTGCTGAGC 58.160 50.000 9.67 0.00 43.02 4.26
1495 3398 0.575859 CGATGTCGATTGCTGAGCAG 59.424 55.000 7.39 0.00 40.06 4.24
1572 3475 8.620116 TGTGTGCTATACATGCATATATTTGT 57.380 30.769 2.19 0.00 42.24 2.83
1573 3476 9.717942 TGTGTGCTATACATGCATATATTTGTA 57.282 29.630 2.19 0.14 42.24 2.41
1574 3477 9.973246 GTGTGCTATACATGCATATATTTGTAC 57.027 33.333 2.19 7.23 42.24 2.90
1602 3505 8.451687 TTTCAATTCAGCTTGTAAAATGATCG 57.548 30.769 0.00 0.00 0.00 3.69
1603 3506 6.554419 TCAATTCAGCTTGTAAAATGATCGG 58.446 36.000 0.00 0.00 0.00 4.18
1604 3507 6.150976 TCAATTCAGCTTGTAAAATGATCGGT 59.849 34.615 0.00 0.00 0.00 4.69
1605 3508 5.545658 TTCAGCTTGTAAAATGATCGGTC 57.454 39.130 0.00 0.00 0.00 4.79
1606 3509 3.938963 TCAGCTTGTAAAATGATCGGTCC 59.061 43.478 0.00 0.00 0.00 4.46
1607 3510 2.936498 AGCTTGTAAAATGATCGGTCCG 59.064 45.455 4.39 4.39 0.00 4.79
1608 3511 2.676342 GCTTGTAAAATGATCGGTCCGT 59.324 45.455 11.88 0.00 0.00 4.69
1609 3512 3.485216 GCTTGTAAAATGATCGGTCCGTG 60.485 47.826 11.88 0.00 0.00 4.94
1610 3513 3.596310 TGTAAAATGATCGGTCCGTGA 57.404 42.857 11.88 0.00 0.00 4.35
1611 3514 3.517602 TGTAAAATGATCGGTCCGTGAG 58.482 45.455 11.88 0.00 0.00 3.51
1612 3515 2.762535 AAAATGATCGGTCCGTGAGT 57.237 45.000 11.88 0.00 0.00 3.41
1613 3516 2.762535 AAATGATCGGTCCGTGAGTT 57.237 45.000 11.88 0.00 0.00 3.01
1618 3521 2.167398 ATCGGTCCGTGAGTTGGTGG 62.167 60.000 11.88 0.00 0.00 4.61
1626 3529 1.757682 GTGAGTTGGTGGGTGTCAAA 58.242 50.000 0.00 0.00 0.00 2.69
1694 3597 6.867550 TGTGAAGAAGATGTATAGTGTCAGG 58.132 40.000 0.00 0.00 0.00 3.86
1750 3659 5.830991 AGCTTCACCATGTACAAAAAGGTTA 59.169 36.000 0.00 0.00 0.00 2.85
1806 3715 2.032178 GCAAAAGAAGCGAGTGTCAAGT 59.968 45.455 0.00 0.00 0.00 3.16
1842 3751 3.394674 TGCATCCGTGTTCTTCAGTTA 57.605 42.857 0.00 0.00 0.00 2.24
1868 3777 8.581253 AGTCTTCCTTTTCAAAGAAGAAGAAA 57.419 30.769 16.35 0.00 41.05 2.52
1871 3780 9.860898 TCTTCCTTTTCAAAGAAGAAGAAAAAG 57.139 29.630 14.01 0.00 38.84 2.27
1883 3792 9.508567 AAGAAGAAGAAAAAGAAATCTCGTTTG 57.491 29.630 0.00 0.00 34.10 2.93
2006 3915 7.839680 ACTTTGGTTGAAAAGATGTATTCCT 57.160 32.000 3.82 0.00 39.12 3.36
2007 3916 7.886338 ACTTTGGTTGAAAAGATGTATTCCTC 58.114 34.615 3.82 0.00 39.12 3.71
2008 3917 6.834168 TTGGTTGAAAAGATGTATTCCTCC 57.166 37.500 0.00 0.00 0.00 4.30
2009 3918 4.941263 TGGTTGAAAAGATGTATTCCTCCG 59.059 41.667 0.00 0.00 0.00 4.63
2010 3919 4.941873 GGTTGAAAAGATGTATTCCTCCGT 59.058 41.667 0.00 0.00 0.00 4.69
2011 3920 5.414765 GGTTGAAAAGATGTATTCCTCCGTT 59.585 40.000 0.00 0.00 0.00 4.44
2013 3922 5.183228 TGAAAAGATGTATTCCTCCGTTCC 58.817 41.667 0.00 0.00 0.00 3.62
2015 3924 4.837093 AAGATGTATTCCTCCGTTCCAA 57.163 40.909 0.00 0.00 0.00 3.53
2018 3927 5.755849 AGATGTATTCCTCCGTTCCAAAAT 58.244 37.500 0.00 0.00 0.00 1.82
2020 3929 6.992715 AGATGTATTCCTCCGTTCCAAAATAG 59.007 38.462 0.00 0.00 0.00 1.73
2024 3933 5.429681 TTCCTCCGTTCCAAAATAGATGA 57.570 39.130 0.00 0.00 0.00 2.92
2026 3935 5.183228 TCCTCCGTTCCAAAATAGATGAAC 58.817 41.667 0.00 0.00 35.03 3.18
2027 3936 4.335594 CCTCCGTTCCAAAATAGATGAACC 59.664 45.833 0.00 0.00 34.93 3.62
2028 3937 4.912586 TCCGTTCCAAAATAGATGAACCA 58.087 39.130 0.00 0.00 34.93 3.67
2029 3938 5.317808 TCCGTTCCAAAATAGATGAACCAA 58.682 37.500 0.00 0.00 34.93 3.67
2030 3939 5.182380 TCCGTTCCAAAATAGATGAACCAAC 59.818 40.000 0.00 0.00 34.93 3.77
2031 3940 5.183140 CCGTTCCAAAATAGATGAACCAACT 59.817 40.000 0.00 0.00 34.93 3.16
2032 3941 6.294508 CCGTTCCAAAATAGATGAACCAACTT 60.295 38.462 0.00 0.00 34.93 2.66
2033 3942 7.145323 CGTTCCAAAATAGATGAACCAACTTT 58.855 34.615 0.00 0.00 34.93 2.66
2034 3943 7.114811 CGTTCCAAAATAGATGAACCAACTTTG 59.885 37.037 0.00 0.00 34.93 2.77
2035 3944 7.595819 TCCAAAATAGATGAACCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2036 3945 8.698973 TCCAAAATAGATGAACCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2037 3946 8.573035 TCCAAAATAGATGAACCAACTTTGTAC 58.427 33.333 0.00 0.00 0.00 2.90
2038 3947 8.576442 CCAAAATAGATGAACCAACTTTGTACT 58.424 33.333 0.00 0.00 0.00 2.73
2043 3952 7.964604 AGATGAACCAACTTTGTACTAACTC 57.035 36.000 0.00 0.00 0.00 3.01
2044 3953 7.736893 AGATGAACCAACTTTGTACTAACTCT 58.263 34.615 0.00 0.00 0.00 3.24
2045 3954 8.867097 AGATGAACCAACTTTGTACTAACTCTA 58.133 33.333 0.00 0.00 0.00 2.43
2046 3955 9.141400 GATGAACCAACTTTGTACTAACTCTAG 57.859 37.037 0.00 0.00 0.00 2.43
2047 3956 8.015185 TGAACCAACTTTGTACTAACTCTAGT 57.985 34.615 0.00 0.00 41.43 2.57
2048 3957 9.135189 TGAACCAACTTTGTACTAACTCTAGTA 57.865 33.333 0.00 0.00 39.23 1.82
2061 3970 8.015185 ACTAACTCTAGTACAAAGTTGGTTCA 57.985 34.615 14.17 0.00 40.45 3.18
2062 3971 8.648693 ACTAACTCTAGTACAAAGTTGGTTCAT 58.351 33.333 14.17 0.00 40.45 2.57
2063 3972 7.964604 AACTCTAGTACAAAGTTGGTTCATC 57.035 36.000 6.72 0.00 32.22 2.92
2064 3973 7.304497 ACTCTAGTACAAAGTTGGTTCATCT 57.696 36.000 0.00 0.00 0.00 2.90
2065 3974 8.418597 ACTCTAGTACAAAGTTGGTTCATCTA 57.581 34.615 0.00 0.00 0.00 1.98
2066 3975 9.036980 ACTCTAGTACAAAGTTGGTTCATCTAT 57.963 33.333 0.00 0.00 0.00 1.98
2067 3976 9.877178 CTCTAGTACAAAGTTGGTTCATCTATT 57.123 33.333 0.00 0.00 0.00 1.73
2071 3980 9.349713 AGTACAAAGTTGGTTCATCTATTTTGA 57.650 29.630 0.00 0.00 0.00 2.69
2072 3981 9.612620 GTACAAAGTTGGTTCATCTATTTTGAG 57.387 33.333 0.00 0.00 0.00 3.02
2073 3982 8.237811 ACAAAGTTGGTTCATCTATTTTGAGT 57.762 30.769 0.00 0.00 0.00 3.41
2074 3983 9.349713 ACAAAGTTGGTTCATCTATTTTGAGTA 57.650 29.630 0.00 0.00 0.00 2.59
2075 3984 9.612620 CAAAGTTGGTTCATCTATTTTGAGTAC 57.387 33.333 0.00 0.00 0.00 2.73
2076 3985 8.918202 AAGTTGGTTCATCTATTTTGAGTACA 57.082 30.769 0.00 0.00 0.00 2.90
2077 3986 8.918202 AGTTGGTTCATCTATTTTGAGTACAA 57.082 30.769 0.00 0.00 0.00 2.41
2078 3987 9.349713 AGTTGGTTCATCTATTTTGAGTACAAA 57.650 29.630 0.00 0.00 43.10 2.83
2079 3988 9.612620 GTTGGTTCATCTATTTTGAGTACAAAG 57.387 33.333 0.00 0.00 44.97 2.77
2080 3989 8.918202 TGGTTCATCTATTTTGAGTACAAAGT 57.082 30.769 0.00 0.00 44.97 2.66
2081 3990 9.349713 TGGTTCATCTATTTTGAGTACAAAGTT 57.650 29.630 0.00 0.00 44.97 2.66
2082 3991 9.612620 GGTTCATCTATTTTGAGTACAAAGTTG 57.387 33.333 0.00 0.00 44.97 3.16
2083 3992 9.612620 GTTCATCTATTTTGAGTACAAAGTTGG 57.387 33.333 0.00 0.00 44.97 3.77
2084 3993 8.918202 TCATCTATTTTGAGTACAAAGTTGGT 57.082 30.769 0.00 0.00 44.97 3.67
2085 3994 9.349713 TCATCTATTTTGAGTACAAAGTTGGTT 57.650 29.630 0.00 0.00 44.97 3.67
2086 3995 9.612620 CATCTATTTTGAGTACAAAGTTGGTTC 57.387 33.333 0.00 0.00 44.97 3.62
2087 3996 8.740123 TCTATTTTGAGTACAAAGTTGGTTCA 57.260 30.769 0.00 0.00 44.97 3.18
2088 3997 9.349713 TCTATTTTGAGTACAAAGTTGGTTCAT 57.650 29.630 0.00 0.00 44.97 2.57
2089 3998 9.612620 CTATTTTGAGTACAAAGTTGGTTCATC 57.387 33.333 0.00 0.00 44.97 2.92
2090 3999 7.639113 TTTTGAGTACAAAGTTGGTTCATCT 57.361 32.000 0.00 0.00 44.97 2.90
2091 4000 8.740123 TTTTGAGTACAAAGTTGGTTCATCTA 57.260 30.769 0.00 0.00 44.97 1.98
2092 4001 8.918202 TTTGAGTACAAAGTTGGTTCATCTAT 57.082 30.769 0.00 0.00 40.47 1.98
2093 4002 8.918202 TTGAGTACAAAGTTGGTTCATCTATT 57.082 30.769 0.00 0.00 32.73 1.73
2094 4003 8.918202 TGAGTACAAAGTTGGTTCATCTATTT 57.082 30.769 0.00 0.00 0.00 1.40
2095 4004 9.349713 TGAGTACAAAGTTGGTTCATCTATTTT 57.650 29.630 0.00 0.00 0.00 1.82
2096 4005 9.612620 GAGTACAAAGTTGGTTCATCTATTTTG 57.387 33.333 0.00 0.00 0.00 2.44
2097 4006 8.576442 AGTACAAAGTTGGTTCATCTATTTTGG 58.424 33.333 0.00 0.00 0.00 3.28
2098 4007 7.595819 ACAAAGTTGGTTCATCTATTTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
2099 4008 8.017418 ACAAAGTTGGTTCATCTATTTTGGAA 57.983 30.769 0.00 0.00 0.00 3.53
2100 4009 7.926018 ACAAAGTTGGTTCATCTATTTTGGAAC 59.074 33.333 0.00 0.00 39.04 3.62
2101 4010 6.254281 AGTTGGTTCATCTATTTTGGAACG 57.746 37.500 0.00 0.00 40.30 3.95
2102 4011 5.183140 AGTTGGTTCATCTATTTTGGAACGG 59.817 40.000 0.00 0.00 40.30 4.44
2103 4012 4.912586 TGGTTCATCTATTTTGGAACGGA 58.087 39.130 0.00 0.00 40.30 4.69
2104 4013 4.941263 TGGTTCATCTATTTTGGAACGGAG 59.059 41.667 0.00 0.00 40.30 4.63
2105 4014 4.335594 GGTTCATCTATTTTGGAACGGAGG 59.664 45.833 0.00 0.00 40.30 4.30
2106 4015 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
2107 4016 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2108 4017 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2109 4018 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2110 4019 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2111 4020 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
2112 4021 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
2113 4022 5.703730 ATTTTGGAACGGAGGGAGTAATA 57.296 39.130 0.00 0.00 0.00 0.98
2114 4023 5.703730 TTTTGGAACGGAGGGAGTAATAT 57.296 39.130 0.00 0.00 0.00 1.28
2115 4024 4.950205 TTGGAACGGAGGGAGTAATATC 57.050 45.455 0.00 0.00 0.00 1.63
2116 4025 2.889045 TGGAACGGAGGGAGTAATATCG 59.111 50.000 0.00 0.00 0.00 2.92
2117 4026 3.152341 GGAACGGAGGGAGTAATATCGA 58.848 50.000 0.00 0.00 0.00 3.59
2122 4031 3.731264 CGGAGGGAGTAATATCGAATCGC 60.731 52.174 0.00 0.00 0.00 4.58
2156 4065 4.081642 ACATGGACGTTATGTGCTACTCTT 60.082 41.667 15.77 0.00 40.08 2.85
2162 4071 4.459685 ACGTTATGTGCTACTCTTGTCTCT 59.540 41.667 0.00 0.00 0.00 3.10
2263 4182 4.338539 ACGCGGACTCACGGACAC 62.339 66.667 12.47 0.00 0.00 3.67
2277 4335 1.021390 GGACACTGTCCGCCTGAATG 61.021 60.000 12.59 0.00 43.14 2.67
2389 4449 3.679389 TCATCCTTGACCTCTCTTTTGC 58.321 45.455 0.00 0.00 0.00 3.68
2390 4450 3.072915 TCATCCTTGACCTCTCTTTTGCA 59.927 43.478 0.00 0.00 0.00 4.08
2391 4451 2.851195 TCCTTGACCTCTCTTTTGCAC 58.149 47.619 0.00 0.00 0.00 4.57
2443 4503 2.531206 GACCAGAATCGGAACTTCTCG 58.469 52.381 0.00 0.00 30.60 4.04
2489 4552 5.616270 TCTAGAGGTGCAGAGTATAGTCAG 58.384 45.833 10.21 3.05 0.00 3.51
2561 4624 5.525012 ACTTCTTTAACGGTGTTTCAGGTAC 59.475 40.000 0.00 0.00 0.00 3.34
2594 4657 3.512033 AAATCAGAGCAGTCGGACTAC 57.488 47.619 10.87 5.16 28.89 2.73
2648 4711 9.238368 CCCCTTATACTTTGATTCTTTACAACA 57.762 33.333 0.00 0.00 0.00 3.33
2660 4723 5.344743 TCTTTACAACAGAGCTGATAGGG 57.655 43.478 4.21 0.00 0.00 3.53
2722 4942 2.125961 ACATCCCCGACTCGGCTAC 61.126 63.158 12.37 0.00 46.86 3.58
2735 4955 5.004535 CGACTCGGCTACAACTTTCTAATTC 59.995 44.000 0.00 0.00 0.00 2.17
2740 4960 5.220228 CGGCTACAACTTTCTAATTCGTCAG 60.220 44.000 0.00 0.00 0.00 3.51
2779 4999 5.701224 TCATCCCAAAACTACAAAGGAAGT 58.299 37.500 0.00 0.00 0.00 3.01
2784 5004 6.769341 TCCCAAAACTACAAAGGAAGTAACTC 59.231 38.462 0.00 0.00 0.00 3.01
2794 5014 7.091443 ACAAAGGAAGTAACTCGTCAGATAAG 58.909 38.462 0.00 0.00 0.00 1.73
2831 5054 7.594714 CAACGCTAAGACTATGGTACTATCAT 58.405 38.462 0.00 0.00 0.00 2.45
2856 5079 8.466617 TCTTAGAGAGTGAATATGAAGGGTAC 57.533 38.462 0.00 0.00 0.00 3.34
2929 5321 9.160412 AGTGAGTAATAATACCTAGGAAATGCT 57.840 33.333 17.98 4.07 32.08 3.79
3067 5459 8.426489 ACCTCACTATAAACAGAACTTACACAA 58.574 33.333 0.00 0.00 0.00 3.33
3072 5466 8.095169 ACTATAAACAGAACTTACACAAGAGGG 58.905 37.037 0.00 0.00 35.60 4.30
3154 5548 1.600636 CGCCCAGGACAGAAAAGCA 60.601 57.895 0.00 0.00 0.00 3.91
3173 5567 1.019278 AAATGCCGTCGCGAGTTGAT 61.019 50.000 10.24 0.00 38.08 2.57
3178 5572 1.864435 GCCGTCGCGAGTTGATATCTT 60.864 52.381 10.24 0.00 0.00 2.40
3221 5615 4.978099 TCTTCTGCAGAAAGAAATGTCCT 58.022 39.130 28.16 0.00 35.79 3.85
3236 5630 8.980481 AGAAATGTCCTTCTCAAAAAGAACTA 57.020 30.769 0.00 0.00 39.12 2.24
3383 5788 6.763355 AGGGCATACTCATACAATTACTCAG 58.237 40.000 0.00 0.00 0.00 3.35
3458 5865 1.165270 AACCATTCAGCTAACGCCAC 58.835 50.000 0.00 0.00 36.60 5.01
3528 5939 9.033481 CAAAGAATAAGCACAGAAATTGAAACA 57.967 29.630 0.00 0.00 0.00 2.83
3542 5953 7.696453 AGAAATTGAAACACAACAGAAAGTACG 59.304 33.333 0.00 0.00 41.52 3.67
3548 5959 3.191669 CACAACAGAAAGTACGACACCA 58.808 45.455 0.00 0.00 0.00 4.17
3586 6004 7.067615 TGCAACAATAAACTCCACTAAACAAGA 59.932 33.333 0.00 0.00 0.00 3.02
3617 6035 4.225497 GGCACCCATCTGCTGTAC 57.775 61.111 0.00 0.00 37.33 2.90
3618 6036 1.604378 GGCACCCATCTGCTGTACT 59.396 57.895 0.00 0.00 37.33 2.73
3619 6037 0.830648 GGCACCCATCTGCTGTACTA 59.169 55.000 0.00 0.00 37.33 1.82
3659 6077 0.677731 ATATGTGTGCTTGCAGCCGT 60.678 50.000 0.00 0.00 41.51 5.68
3660 6078 1.576451 TATGTGTGCTTGCAGCCGTG 61.576 55.000 0.00 0.00 41.51 4.94
3701 6119 3.463704 GGGACAGAGGGAGGGAATAATTT 59.536 47.826 0.00 0.00 0.00 1.82
3702 6120 4.079154 GGGACAGAGGGAGGGAATAATTTT 60.079 45.833 0.00 0.00 0.00 1.82
3716 6134 9.059023 AGGGAATAATTTTACTAGAACAGGACT 57.941 33.333 0.00 0.00 0.00 3.85
3727 6145 9.690913 TTACTAGAACAGGACTATAACTTAGCA 57.309 33.333 0.00 0.00 0.00 3.49
3732 6150 8.376270 AGAACAGGACTATAACTTAGCAAAACT 58.624 33.333 0.00 0.00 0.00 2.66
3767 6185 3.004752 ACCCCACATTTCTGTAGCATC 57.995 47.619 0.00 0.00 33.14 3.91
3799 6217 6.143438 CGCAAAATAAGCCTTGAATGATCATC 59.857 38.462 9.06 3.57 34.96 2.92
3868 6286 7.171167 AGAGCATGCTTATCATATATCGAATGC 59.829 37.037 23.61 1.74 37.53 3.56
3905 6323 6.492007 ACAATGAAGTAGAGCACATTTCAG 57.508 37.500 0.00 0.00 32.00 3.02
3909 6327 6.791887 TGAAGTAGAGCACATTTCAGAAAG 57.208 37.500 1.28 0.00 0.00 2.62
4190 6619 8.561738 TTAGCAGTAGAAATTCTAAAAGGTGG 57.438 34.615 4.04 0.00 29.58 4.61
4194 6623 7.336931 GCAGTAGAAATTCTAAAAGGTGGATGA 59.663 37.037 4.04 0.00 29.58 2.92
4226 6655 0.535102 AGTCTGGAAACAAGCCACGG 60.535 55.000 0.00 0.00 42.06 4.94
4263 6692 3.818180 AGCTGAATCTAGGAATTGCCAG 58.182 45.455 0.00 0.00 40.02 4.85
4406 6836 6.655003 ACTCATTACAAGTCCAAACCTACATG 59.345 38.462 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 1869 1.013524 GCGAACTAACCGCGGGTAAA 61.014 55.000 31.76 8.04 43.28 2.01
69 1888 0.323633 TTGGCACTGATGGGGATGTG 60.324 55.000 0.00 0.00 0.00 3.21
156 1979 5.389859 TCATCTGCTGGTATTTGTTTTGG 57.610 39.130 0.00 0.00 0.00 3.28
166 1989 3.507622 CCAGATCGTATCATCTGCTGGTA 59.492 47.826 6.36 0.00 45.96 3.25
167 1990 2.298446 CCAGATCGTATCATCTGCTGGT 59.702 50.000 6.36 0.00 45.96 4.00
168 1991 2.298446 ACCAGATCGTATCATCTGCTGG 59.702 50.000 0.00 0.00 45.96 4.85
297 2127 1.804601 GGCTTAAACTAGTGCGGTGT 58.195 50.000 0.00 0.00 0.00 4.16
306 2136 0.174162 GACCTCGCCGGCTTAAACTA 59.826 55.000 26.68 0.00 35.61 2.24
333 2163 0.392863 TGACGTGGAGGCATGATTGG 60.393 55.000 0.00 0.00 28.76 3.16
372 2202 1.912417 TCGTGGTTAAACAATGGGGG 58.088 50.000 0.00 0.00 0.00 5.40
385 2215 4.673298 TTGCGTGGCGATCGTGGT 62.673 61.111 17.81 0.00 0.00 4.16
442 2272 2.799917 CGGGACAAGAAGATCGATCCAC 60.800 54.545 21.66 15.26 0.00 4.02
561 2408 4.758165 TGGTCGAGTTCTTTTTATCCAACC 59.242 41.667 0.00 0.00 0.00 3.77
608 2456 2.523015 CTGCCGCAAAAGATAAGCAAG 58.477 47.619 0.00 0.00 0.00 4.01
661 2516 3.997021 CTCAGTTGCAGTAATTTCTCGGT 59.003 43.478 0.00 0.00 0.00 4.69
699 2554 2.165167 TCCAAGTGGAGTACGTAGTGG 58.835 52.381 7.86 1.71 39.95 4.00
782 2644 6.670695 AATTAATCATTGGGGCTATGGAAC 57.329 37.500 0.00 0.00 0.00 3.62
808 2670 6.172630 GGTAACTAACAGAATTCCCGGTTAA 58.827 40.000 0.00 0.00 0.00 2.01
809 2671 5.624281 CGGTAACTAACAGAATTCCCGGTTA 60.624 44.000 0.00 8.07 0.00 2.85
810 2672 4.582869 GGTAACTAACAGAATTCCCGGTT 58.417 43.478 0.00 7.33 0.00 4.44
811 2673 3.368739 CGGTAACTAACAGAATTCCCGGT 60.369 47.826 0.00 0.00 0.00 5.28
812 2674 3.192466 CGGTAACTAACAGAATTCCCGG 58.808 50.000 0.65 0.00 0.00 5.73
813 2675 3.192466 CCGGTAACTAACAGAATTCCCG 58.808 50.000 0.65 4.52 0.00 5.14
814 2676 3.538591 CCCGGTAACTAACAGAATTCCC 58.461 50.000 0.00 0.00 0.00 3.97
815 2677 3.538591 CCCCGGTAACTAACAGAATTCC 58.461 50.000 0.00 0.00 0.00 3.01
816 2678 3.198417 TCCCCCGGTAACTAACAGAATTC 59.802 47.826 0.00 0.00 0.00 2.17
818 2680 2.836667 TCCCCCGGTAACTAACAGAAT 58.163 47.619 0.00 0.00 0.00 2.40
819 2681 2.323999 TCCCCCGGTAACTAACAGAA 57.676 50.000 0.00 0.00 0.00 3.02
822 2684 3.588396 AGAATTTCCCCCGGTAACTAACA 59.412 43.478 0.00 0.00 0.00 2.41
823 2685 4.194640 GAGAATTTCCCCCGGTAACTAAC 58.805 47.826 0.00 0.00 0.00 2.34
824 2686 3.845398 TGAGAATTTCCCCCGGTAACTAA 59.155 43.478 0.00 0.00 0.00 2.24
825 2687 3.452878 TGAGAATTTCCCCCGGTAACTA 58.547 45.455 0.00 0.00 0.00 2.24
826 2688 2.271777 TGAGAATTTCCCCCGGTAACT 58.728 47.619 0.00 0.00 0.00 2.24
827 2689 2.793288 TGAGAATTTCCCCCGGTAAC 57.207 50.000 0.00 0.00 0.00 2.50
828 2690 2.092103 CCATGAGAATTTCCCCCGGTAA 60.092 50.000 0.00 0.00 0.00 2.85
829 2691 1.493022 CCATGAGAATTTCCCCCGGTA 59.507 52.381 0.00 0.00 0.00 4.02
830 2692 0.258774 CCATGAGAATTTCCCCCGGT 59.741 55.000 0.00 0.00 0.00 5.28
831 2693 0.258774 ACCATGAGAATTTCCCCCGG 59.741 55.000 0.00 0.00 0.00 5.73
832 2694 1.064758 TCACCATGAGAATTTCCCCCG 60.065 52.381 0.00 0.00 0.00 5.73
873 2755 6.259608 ACCTTAGCTCTGAAATCAATCAATCG 59.740 38.462 0.00 0.00 0.00 3.34
888 2770 2.233431 CTGACAGCTTCACCTTAGCTCT 59.767 50.000 0.00 0.00 45.52 4.09
952 2842 6.142498 ACATTCCTCTGAGTGGATAGAGATT 58.858 40.000 3.83 0.00 42.34 2.40
1013 2903 4.424711 TTGGGGTGATGGCGAGGC 62.425 66.667 0.00 0.00 0.00 4.70
1025 2918 0.457851 TTTGACACGCTTTGTTGGGG 59.542 50.000 0.00 0.00 39.17 4.96
1090 2993 2.045561 TCGAGAGAGCCGAAGAAGAT 57.954 50.000 0.00 0.00 34.84 2.40
1280 3183 2.125350 GCCGAGAAGAGCTGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
1378 3281 2.225019 ACTTTCTGCGCTTCAATCACAG 59.775 45.455 9.73 0.00 0.00 3.66
1399 3302 9.540538 TTTGTTTTCTTATTATCCCTTGGATGA 57.459 29.630 5.88 0.00 43.06 2.92
1401 3304 8.478066 GCTTTGTTTTCTTATTATCCCTTGGAT 58.522 33.333 0.65 0.65 45.40 3.41
1402 3305 7.453126 TGCTTTGTTTTCTTATTATCCCTTGGA 59.547 33.333 0.00 0.00 35.55 3.53
1403 3306 7.610865 TGCTTTGTTTTCTTATTATCCCTTGG 58.389 34.615 0.00 0.00 0.00 3.61
1404 3307 9.487790 TTTGCTTTGTTTTCTTATTATCCCTTG 57.512 29.630 0.00 0.00 0.00 3.61
1407 3310 7.602265 TGCTTTGCTTTGTTTTCTTATTATCCC 59.398 33.333 0.00 0.00 0.00 3.85
1408 3311 8.532977 TGCTTTGCTTTGTTTTCTTATTATCC 57.467 30.769 0.00 0.00 0.00 2.59
1409 3312 8.650714 CCTGCTTTGCTTTGTTTTCTTATTATC 58.349 33.333 0.00 0.00 0.00 1.75
1410 3313 8.150296 ACCTGCTTTGCTTTGTTTTCTTATTAT 58.850 29.630 0.00 0.00 0.00 1.28
1411 3314 7.437862 CACCTGCTTTGCTTTGTTTTCTTATTA 59.562 33.333 0.00 0.00 0.00 0.98
1412 3315 6.258507 CACCTGCTTTGCTTTGTTTTCTTATT 59.741 34.615 0.00 0.00 0.00 1.40
1413 3316 5.754890 CACCTGCTTTGCTTTGTTTTCTTAT 59.245 36.000 0.00 0.00 0.00 1.73
1414 3317 5.105554 TCACCTGCTTTGCTTTGTTTTCTTA 60.106 36.000 0.00 0.00 0.00 2.10
1418 3321 3.608316 TCACCTGCTTTGCTTTGTTTT 57.392 38.095 0.00 0.00 0.00 2.43
1424 3327 2.355010 AGTCTTCACCTGCTTTGCTT 57.645 45.000 0.00 0.00 0.00 3.91
1428 3331 1.133668 AGGCAAGTCTTCACCTGCTTT 60.134 47.619 3.32 0.00 0.00 3.51
1461 3364 3.665871 CGACATCGTATCTGCATGTACTG 59.334 47.826 0.00 0.00 30.71 2.74
1492 3395 2.100991 GCCAATACGTGCAGCTGC 59.899 61.111 31.89 31.89 42.50 5.25
1493 3396 0.461870 TAGGCCAATACGTGCAGCTG 60.462 55.000 10.11 10.11 0.00 4.24
1495 3398 1.776034 GCTAGGCCAATACGTGCAGC 61.776 60.000 5.01 0.00 0.00 5.25
1498 3401 2.135933 CTTAGCTAGGCCAATACGTGC 58.864 52.381 5.01 0.00 0.00 5.34
1499 3402 2.135933 GCTTAGCTAGGCCAATACGTG 58.864 52.381 16.64 0.00 0.00 4.49
1501 3404 2.821991 AGCTTAGCTAGGCCAATACG 57.178 50.000 22.94 0.00 36.99 3.06
1595 3498 1.405526 CCAACTCACGGACCGATCATT 60.406 52.381 23.38 6.64 0.00 2.57
1596 3499 0.175760 CCAACTCACGGACCGATCAT 59.824 55.000 23.38 0.00 0.00 2.45
1597 3500 1.183030 ACCAACTCACGGACCGATCA 61.183 55.000 23.38 2.23 0.00 2.92
1599 3502 1.292223 CACCAACTCACGGACCGAT 59.708 57.895 23.38 1.43 0.00 4.18
1600 3503 2.732016 CACCAACTCACGGACCGA 59.268 61.111 23.38 0.00 0.00 4.69
1601 3504 2.357034 CCACCAACTCACGGACCG 60.357 66.667 13.61 13.61 0.00 4.79
1602 3505 2.032071 CCCACCAACTCACGGACC 59.968 66.667 0.00 0.00 0.00 4.46
1603 3506 1.597027 CACCCACCAACTCACGGAC 60.597 63.158 0.00 0.00 0.00 4.79
1604 3507 2.035237 GACACCCACCAACTCACGGA 62.035 60.000 0.00 0.00 0.00 4.69
1605 3508 1.597027 GACACCCACCAACTCACGG 60.597 63.158 0.00 0.00 0.00 4.94
1606 3509 0.462937 TTGACACCCACCAACTCACG 60.463 55.000 0.00 0.00 0.00 4.35
1607 3510 1.757682 TTTGACACCCACCAACTCAC 58.242 50.000 0.00 0.00 0.00 3.51
1608 3511 2.305928 CATTTGACACCCACCAACTCA 58.694 47.619 0.00 0.00 0.00 3.41
1609 3512 2.306847 ACATTTGACACCCACCAACTC 58.693 47.619 0.00 0.00 0.00 3.01
1610 3513 2.452600 ACATTTGACACCCACCAACT 57.547 45.000 0.00 0.00 0.00 3.16
1611 3514 4.657436 TTTACATTTGACACCCACCAAC 57.343 40.909 0.00 0.00 0.00 3.77
1612 3515 6.071108 CCATATTTACATTTGACACCCACCAA 60.071 38.462 0.00 0.00 0.00 3.67
1613 3516 5.420421 CCATATTTACATTTGACACCCACCA 59.580 40.000 0.00 0.00 0.00 4.17
1618 3521 6.183360 TGCATCCCATATTTACATTTGACACC 60.183 38.462 0.00 0.00 0.00 4.16
1626 3529 4.022935 CGCTTGTGCATCCCATATTTACAT 60.023 41.667 0.00 0.00 39.64 2.29
1750 3659 2.068519 CAGTCATGTGTGCGTGTACAT 58.931 47.619 0.00 0.00 37.99 2.29
1830 3739 7.827236 TGAAAAGGAAGACTTAACTGAAGAACA 59.173 33.333 0.00 0.00 38.85 3.18
1868 3777 4.272504 TCGAACTGCAAACGAGATTTCTTT 59.727 37.500 5.64 0.00 0.00 2.52
1871 3780 3.788434 TCGAACTGCAAACGAGATTTC 57.212 42.857 5.64 0.00 0.00 2.17
1883 3792 6.378582 TGTTTTTATCCTGATTTCGAACTGC 58.621 36.000 0.00 0.00 0.00 4.40
1922 3831 1.771854 TGGTTGTTCTTGCTCTGGGTA 59.228 47.619 0.00 0.00 0.00 3.69
1948 3857 8.616076 GTTCTTCTGAGTTTCATCAAGAGAAAA 58.384 33.333 0.00 0.00 36.80 2.29
1950 3859 7.275183 TGTTCTTCTGAGTTTCATCAAGAGAA 58.725 34.615 0.00 0.00 31.12 2.87
1952 3861 7.440556 TCTTGTTCTTCTGAGTTTCATCAAGAG 59.559 37.037 0.00 0.00 34.69 2.85
1953 3862 7.275183 TCTTGTTCTTCTGAGTTTCATCAAGA 58.725 34.615 0.00 0.00 36.37 3.02
1954 3863 7.488187 TCTTGTTCTTCTGAGTTTCATCAAG 57.512 36.000 0.00 0.00 0.00 3.02
1955 3864 7.864108 TTCTTGTTCTTCTGAGTTTCATCAA 57.136 32.000 0.00 0.00 0.00 2.57
1956 3865 9.559732 TTATTCTTGTTCTTCTGAGTTTCATCA 57.440 29.630 0.00 0.00 0.00 3.07
1957 3866 9.818796 GTTATTCTTGTTCTTCTGAGTTTCATC 57.181 33.333 0.00 0.00 0.00 2.92
1958 3867 9.566432 AGTTATTCTTGTTCTTCTGAGTTTCAT 57.434 29.630 0.00 0.00 0.00 2.57
2003 3912 5.183228 GTTCATCTATTTTGGAACGGAGGA 58.817 41.667 0.00 0.00 31.48 3.71
2005 3914 4.941263 TGGTTCATCTATTTTGGAACGGAG 59.059 41.667 0.00 0.00 40.30 4.63
2006 3915 4.912586 TGGTTCATCTATTTTGGAACGGA 58.087 39.130 0.00 0.00 40.30 4.69
2007 3916 5.183140 AGTTGGTTCATCTATTTTGGAACGG 59.817 40.000 0.00 0.00 40.30 4.44
2008 3917 6.254281 AGTTGGTTCATCTATTTTGGAACG 57.746 37.500 0.00 0.00 40.30 3.95
2009 3918 7.926018 ACAAAGTTGGTTCATCTATTTTGGAAC 59.074 33.333 0.00 0.00 39.04 3.62
2010 3919 8.017418 ACAAAGTTGGTTCATCTATTTTGGAA 57.983 30.769 0.00 0.00 0.00 3.53
2011 3920 7.595819 ACAAAGTTGGTTCATCTATTTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
2018 3927 8.867097 AGAGTTAGTACAAAGTTGGTTCATCTA 58.133 33.333 0.00 0.00 0.00 1.98
2020 3929 7.964604 AGAGTTAGTACAAAGTTGGTTCATC 57.035 36.000 0.00 0.00 0.00 2.92
2035 3944 9.135189 TGAACCAACTTTGTACTAGAGTTAGTA 57.865 33.333 0.00 0.00 40.55 1.82
2036 3945 8.015185 TGAACCAACTTTGTACTAGAGTTAGT 57.985 34.615 0.00 5.69 42.66 2.24
2037 3946 9.141400 GATGAACCAACTTTGTACTAGAGTTAG 57.859 37.037 0.00 5.22 32.69 2.34
2038 3947 8.867097 AGATGAACCAACTTTGTACTAGAGTTA 58.133 33.333 0.00 0.00 32.69 2.24
2039 3948 7.736893 AGATGAACCAACTTTGTACTAGAGTT 58.263 34.615 0.00 0.00 34.14 3.01
2040 3949 7.304497 AGATGAACCAACTTTGTACTAGAGT 57.696 36.000 0.00 0.00 0.00 3.24
2041 3950 9.877178 AATAGATGAACCAACTTTGTACTAGAG 57.123 33.333 0.00 0.00 0.00 2.43
2045 3954 9.349713 TCAAAATAGATGAACCAACTTTGTACT 57.650 29.630 0.00 0.00 0.00 2.73
2046 3955 9.612620 CTCAAAATAGATGAACCAACTTTGTAC 57.387 33.333 0.00 0.00 0.00 2.90
2047 3956 9.349713 ACTCAAAATAGATGAACCAACTTTGTA 57.650 29.630 0.00 0.00 0.00 2.41
2048 3957 8.237811 ACTCAAAATAGATGAACCAACTTTGT 57.762 30.769 0.00 0.00 0.00 2.83
2049 3958 9.612620 GTACTCAAAATAGATGAACCAACTTTG 57.387 33.333 0.00 0.00 0.00 2.77
2050 3959 9.349713 TGTACTCAAAATAGATGAACCAACTTT 57.650 29.630 0.00 0.00 0.00 2.66
2051 3960 8.918202 TGTACTCAAAATAGATGAACCAACTT 57.082 30.769 0.00 0.00 0.00 2.66
2052 3961 8.918202 TTGTACTCAAAATAGATGAACCAACT 57.082 30.769 0.00 0.00 0.00 3.16
2053 3962 9.612620 CTTTGTACTCAAAATAGATGAACCAAC 57.387 33.333 0.00 0.00 42.02 3.77
2054 3963 9.349713 ACTTTGTACTCAAAATAGATGAACCAA 57.650 29.630 0.00 0.00 42.02 3.67
2055 3964 8.918202 ACTTTGTACTCAAAATAGATGAACCA 57.082 30.769 0.00 0.00 42.02 3.67
2056 3965 9.612620 CAACTTTGTACTCAAAATAGATGAACC 57.387 33.333 0.00 0.00 42.02 3.62
2057 3966 9.612620 CCAACTTTGTACTCAAAATAGATGAAC 57.387 33.333 0.00 0.00 42.02 3.18
2058 3967 9.349713 ACCAACTTTGTACTCAAAATAGATGAA 57.650 29.630 0.00 0.00 42.02 2.57
2059 3968 8.918202 ACCAACTTTGTACTCAAAATAGATGA 57.082 30.769 0.00 0.00 42.02 2.92
2060 3969 9.612620 GAACCAACTTTGTACTCAAAATAGATG 57.387 33.333 0.00 0.00 42.02 2.90
2061 3970 9.349713 TGAACCAACTTTGTACTCAAAATAGAT 57.650 29.630 0.00 0.00 42.02 1.98
2062 3971 8.740123 TGAACCAACTTTGTACTCAAAATAGA 57.260 30.769 0.00 0.00 42.02 1.98
2063 3972 9.612620 GATGAACCAACTTTGTACTCAAAATAG 57.387 33.333 0.00 0.00 42.02 1.73
2064 3973 9.349713 AGATGAACCAACTTTGTACTCAAAATA 57.650 29.630 0.00 0.00 42.02 1.40
2065 3974 8.237811 AGATGAACCAACTTTGTACTCAAAAT 57.762 30.769 0.00 0.00 42.02 1.82
2066 3975 7.639113 AGATGAACCAACTTTGTACTCAAAA 57.361 32.000 0.00 0.00 42.02 2.44
2067 3976 8.918202 ATAGATGAACCAACTTTGTACTCAAA 57.082 30.769 0.00 0.00 40.64 2.69
2068 3977 8.918202 AATAGATGAACCAACTTTGTACTCAA 57.082 30.769 0.00 0.00 0.00 3.02
2069 3978 8.918202 AAATAGATGAACCAACTTTGTACTCA 57.082 30.769 0.00 0.00 0.00 3.41
2070 3979 9.612620 CAAAATAGATGAACCAACTTTGTACTC 57.387 33.333 0.00 0.00 0.00 2.59
2071 3980 8.576442 CCAAAATAGATGAACCAACTTTGTACT 58.424 33.333 0.00 0.00 0.00 2.73
2072 3981 8.573035 TCCAAAATAGATGAACCAACTTTGTAC 58.427 33.333 0.00 0.00 0.00 2.90
2073 3982 8.698973 TCCAAAATAGATGAACCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2074 3983 7.595819 TCCAAAATAGATGAACCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2075 3984 7.114811 CGTTCCAAAATAGATGAACCAACTTTG 59.885 37.037 0.00 0.00 34.93 2.77
2076 3985 7.145323 CGTTCCAAAATAGATGAACCAACTTT 58.855 34.615 0.00 0.00 34.93 2.66
2077 3986 6.294508 CCGTTCCAAAATAGATGAACCAACTT 60.295 38.462 0.00 0.00 34.93 2.66
2078 3987 5.183140 CCGTTCCAAAATAGATGAACCAACT 59.817 40.000 0.00 0.00 34.93 3.16
2079 3988 5.182380 TCCGTTCCAAAATAGATGAACCAAC 59.818 40.000 0.00 0.00 34.93 3.77
2080 3989 5.317808 TCCGTTCCAAAATAGATGAACCAA 58.682 37.500 0.00 0.00 34.93 3.67
2081 3990 4.912586 TCCGTTCCAAAATAGATGAACCA 58.087 39.130 0.00 0.00 34.93 3.67
2082 3991 4.335594 CCTCCGTTCCAAAATAGATGAACC 59.664 45.833 0.00 0.00 34.93 3.62
2083 3992 4.335594 CCCTCCGTTCCAAAATAGATGAAC 59.664 45.833 0.00 0.00 35.03 3.18
2084 3993 4.226394 TCCCTCCGTTCCAAAATAGATGAA 59.774 41.667 0.00 0.00 0.00 2.57
2085 3994 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2086 3995 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2087 3996 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2088 3997 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2089 3998 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2090 3999 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2091 4000 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2092 4001 5.677567 GATATTACTCCCTCCGTTCCAAAA 58.322 41.667 0.00 0.00 0.00 2.44
2093 4002 4.202182 CGATATTACTCCCTCCGTTCCAAA 60.202 45.833 0.00 0.00 0.00 3.28
2094 4003 3.319972 CGATATTACTCCCTCCGTTCCAA 59.680 47.826 0.00 0.00 0.00 3.53
2095 4004 2.889045 CGATATTACTCCCTCCGTTCCA 59.111 50.000 0.00 0.00 0.00 3.53
2096 4005 3.152341 TCGATATTACTCCCTCCGTTCC 58.848 50.000 0.00 0.00 0.00 3.62
2097 4006 4.843220 TTCGATATTACTCCCTCCGTTC 57.157 45.455 0.00 0.00 0.00 3.95
2098 4007 4.082895 CGATTCGATATTACTCCCTCCGTT 60.083 45.833 0.00 0.00 0.00 4.44
2099 4008 3.439476 CGATTCGATATTACTCCCTCCGT 59.561 47.826 0.00 0.00 0.00 4.69
2100 4009 3.731264 GCGATTCGATATTACTCCCTCCG 60.731 52.174 10.88 0.00 0.00 4.63
2101 4010 3.192844 TGCGATTCGATATTACTCCCTCC 59.807 47.826 10.88 0.00 0.00 4.30
2102 4011 4.436242 TGCGATTCGATATTACTCCCTC 57.564 45.455 10.88 0.00 0.00 4.30
2103 4012 4.438880 CGATGCGATTCGATATTACTCCCT 60.439 45.833 10.88 0.00 41.62 4.20
2104 4013 3.791887 CGATGCGATTCGATATTACTCCC 59.208 47.826 10.88 0.00 41.62 4.30
2105 4014 3.240861 GCGATGCGATTCGATATTACTCC 59.759 47.826 10.88 0.00 41.62 3.85
2106 4015 3.851969 TGCGATGCGATTCGATATTACTC 59.148 43.478 10.88 0.00 41.62 2.59
2107 4016 3.833442 TGCGATGCGATTCGATATTACT 58.167 40.909 10.88 0.00 41.62 2.24
2108 4017 4.323602 TCTTGCGATGCGATTCGATATTAC 59.676 41.667 10.88 1.16 41.62 1.89
2109 4018 4.481463 TCTTGCGATGCGATTCGATATTA 58.519 39.130 10.88 0.00 41.62 0.98
2110 4019 3.317150 TCTTGCGATGCGATTCGATATT 58.683 40.909 10.88 0.00 41.62 1.28
2111 4020 2.946564 TCTTGCGATGCGATTCGATAT 58.053 42.857 10.88 3.05 41.62 1.63
2112 4021 2.415697 TCTTGCGATGCGATTCGATA 57.584 45.000 10.88 0.00 41.62 2.92
2113 4022 1.570813 TTCTTGCGATGCGATTCGAT 58.429 45.000 10.88 0.45 41.62 3.59
2114 4023 1.060553 GTTTCTTGCGATGCGATTCGA 59.939 47.619 10.88 0.00 41.62 3.71
2115 4024 1.201910 TGTTTCTTGCGATGCGATTCG 60.202 47.619 0.62 0.62 41.99 3.34
2116 4025 2.525750 TGTTTCTTGCGATGCGATTC 57.474 45.000 0.00 0.00 0.00 2.52
2117 4026 2.478370 CCATGTTTCTTGCGATGCGATT 60.478 45.455 0.00 0.00 0.00 3.34
2122 4031 1.464608 ACGTCCATGTTTCTTGCGATG 59.535 47.619 0.00 0.00 0.00 3.84
2144 4053 6.183360 CCTGATTAGAGACAAGAGTAGCACAT 60.183 42.308 0.00 0.00 0.00 3.21
2156 4065 6.183360 GCATACTCCTTTCCTGATTAGAGACA 60.183 42.308 0.00 0.00 0.00 3.41
2162 4071 3.728845 GCGCATACTCCTTTCCTGATTA 58.271 45.455 0.30 0.00 0.00 1.75
2263 4182 0.463295 AGATGCATTCAGGCGGACAG 60.463 55.000 0.00 0.00 36.28 3.51
2277 4335 9.722056 ATATCGAACTGAATTTAACAAAGATGC 57.278 29.630 0.00 0.00 0.00 3.91
2334 4394 0.394192 TGGGCTTGGCTCTCGATATG 59.606 55.000 0.00 0.00 0.00 1.78
2416 4476 2.939103 GTTCCGATTCTGGTCCATTCAG 59.061 50.000 0.00 0.00 0.00 3.02
2423 4483 2.094649 ACGAGAAGTTCCGATTCTGGTC 60.095 50.000 17.12 0.00 40.38 4.02
2443 4503 6.879993 AGATCATCTGAATGGAATATCTGCAC 59.120 38.462 0.00 0.00 33.42 4.57
2489 4552 1.847999 CGAATTTCATCAACGCCATGC 59.152 47.619 0.00 0.00 0.00 4.06
2561 4624 7.810658 ACTGCTCTGATTTTGTTGTATAACTG 58.189 34.615 3.89 0.00 37.68 3.16
2671 4734 9.286946 CTGAATGAACATAAAGAATCTTTCAGC 57.713 33.333 11.97 1.84 42.21 4.26
2686 4756 2.493035 TGTGTGTCGCTGAATGAACAT 58.507 42.857 0.00 0.00 0.00 2.71
2735 4955 4.150451 TGATGCGATGTAATATTGCTGACG 59.850 41.667 5.11 8.58 0.00 4.35
2740 4960 4.395854 TGGGATGATGCGATGTAATATTGC 59.604 41.667 0.00 0.00 0.00 3.56
2748 4968 2.726821 AGTTTTGGGATGATGCGATGT 58.273 42.857 0.00 0.00 0.00 3.06
2779 4999 5.163683 GCTGTACCACTTATCTGACGAGTTA 60.164 44.000 0.00 0.00 0.00 2.24
2784 5004 3.439293 CAGCTGTACCACTTATCTGACG 58.561 50.000 5.25 0.00 0.00 4.35
2794 5014 2.556287 GCGTTGCAGCTGTACCAC 59.444 61.111 16.64 6.06 0.00 4.16
2831 5054 7.506261 GGTACCCTTCATATTCACTCTCTAAGA 59.494 40.741 0.00 0.00 0.00 2.10
2856 5079 3.939592 GGTTTCTCAATAGTTTCTCCGGG 59.060 47.826 0.00 0.00 0.00 5.73
2858 5081 4.491676 TCGGTTTCTCAATAGTTTCTCCG 58.508 43.478 0.00 0.00 36.30 4.63
2864 5087 7.552687 TGATGCTAAATCGGTTTCTCAATAGTT 59.447 33.333 0.00 0.00 0.00 2.24
2929 5321 3.197766 CACCTGTAAACTCCATGGAGCTA 59.802 47.826 36.78 26.01 45.54 3.32
3023 5415 2.771943 AGGTTTCCGCTCATCATAGGAA 59.228 45.455 0.00 0.00 40.60 3.36
3067 5459 5.957771 TCTGATTTTGTGTATAGCCCTCT 57.042 39.130 0.00 0.00 0.00 3.69
3072 5466 6.433766 GCATCCTTCTGATTTTGTGTATAGC 58.566 40.000 0.00 0.00 0.00 2.97
3154 5548 1.019278 ATCAACTCGCGACGGCATTT 61.019 50.000 3.71 0.00 39.92 2.32
3173 5567 2.301870 ACGAACTGCCTTGTGGAAGATA 59.698 45.455 0.00 0.00 41.82 1.98
3178 5572 2.851263 ATTACGAACTGCCTTGTGGA 57.149 45.000 0.00 0.00 34.57 4.02
3221 5615 7.500892 TGCTGGTGTAATAGTTCTTTTTGAGAA 59.499 33.333 0.00 0.00 42.03 2.87
3236 5630 0.325933 TGCTCAGCTGCTGGTGTAAT 59.674 50.000 27.79 0.00 41.91 1.89
3383 5788 5.075670 CATGTCATGCAGTCTTAATCGAC 57.924 43.478 0.00 0.00 0.00 4.20
3499 5910 9.814899 TTCAATTTCTGTGCTTATTCTTTGAAA 57.185 25.926 0.00 0.00 0.00 2.69
3503 5914 9.034544 GTGTTTCAATTTCTGTGCTTATTCTTT 57.965 29.630 0.00 0.00 0.00 2.52
3506 5917 7.928908 TGTGTTTCAATTTCTGTGCTTATTC 57.071 32.000 0.00 0.00 0.00 1.75
3522 5933 4.930405 TGTCGTACTTTCTGTTGTGTTTCA 59.070 37.500 0.00 0.00 0.00 2.69
3523 5934 5.253335 GTGTCGTACTTTCTGTTGTGTTTC 58.747 41.667 0.00 0.00 0.00 2.78
3528 5939 3.530265 TGGTGTCGTACTTTCTGTTGT 57.470 42.857 0.00 0.00 0.00 3.32
3542 5953 6.442952 TGTTGCACACTAAATTTATGGTGTC 58.557 36.000 21.09 16.27 40.34 3.67
3586 6004 2.158385 TGGGTGCCCTTGTGAGTTATTT 60.158 45.455 8.91 0.00 36.94 1.40
3619 6037 9.542462 ACATATTACATGTATGACGTTTAAGCT 57.458 29.630 12.91 0.00 34.44 3.74
3633 6051 5.239359 CTGCAAGCACACATATTACATGT 57.761 39.130 2.69 2.69 0.00 3.21
3659 6077 1.600485 CGCTCAAGATACATGCATGCA 59.400 47.619 26.53 25.04 0.00 3.96
3660 6078 1.069432 CCGCTCAAGATACATGCATGC 60.069 52.381 26.53 11.82 0.00 4.06
3661 6079 1.534163 CCCGCTCAAGATACATGCATG 59.466 52.381 25.09 25.09 0.00 4.06
3662 6080 1.417517 TCCCGCTCAAGATACATGCAT 59.582 47.619 0.00 0.00 0.00 3.96
3701 6119 9.690913 TGCTAAGTTATAGTCCTGTTCTAGTAA 57.309 33.333 0.00 0.00 0.00 2.24
3702 6120 9.690913 TTGCTAAGTTATAGTCCTGTTCTAGTA 57.309 33.333 0.00 0.00 0.00 1.82
3725 6143 9.445878 GGGGTTCTATACCTAATATAGTTTTGC 57.554 37.037 0.00 0.00 46.86 3.68
3739 6157 5.112129 ACAGAAATGTGGGGTTCTATACC 57.888 43.478 0.00 0.00 46.99 2.73
3767 6185 2.012673 AGGCTTATTTTGCGAGCTGAG 58.987 47.619 0.00 0.00 36.66 3.35
3773 6191 5.125257 TGATCATTCAAGGCTTATTTTGCGA 59.875 36.000 0.00 0.00 0.00 5.10
4190 6619 8.492673 TTCCAGACTTGTATTAACACATCATC 57.507 34.615 0.00 0.00 34.61 2.92
4194 6623 8.458573 TTGTTTCCAGACTTGTATTAACACAT 57.541 30.769 0.00 0.00 34.61 3.21
4226 6655 7.308435 AGATTCAGCTACAAATTTAGTGCAAC 58.692 34.615 0.00 0.00 0.00 4.17
4263 6692 3.683937 GGTGTGGGTGCATGGTGC 61.684 66.667 0.00 0.00 45.29 5.01
4364 6794 5.796350 ATGAGTGGCGATTTTAGTACAAC 57.204 39.130 0.00 0.00 0.00 3.32
4406 6836 3.058639 GTGAGACATGTGCTTGAGGAAAC 60.059 47.826 1.15 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.