Multiple sequence alignment - TraesCS1B01G291500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G291500 chr1B 100.000 3430 0 0 1 3430 508710273 508706844 0.000000e+00 6335
1 TraesCS1B01G291500 chr1B 96.865 638 18 2 2791 3428 36835305 36834670 0.000000e+00 1066
2 TraesCS1B01G291500 chr1B 96.530 317 9 2 1 317 508723184 508722870 1.090000e-144 523
3 TraesCS1B01G291500 chr1B 96.215 317 10 2 1 317 504119449 504119763 5.070000e-143 518
4 TraesCS1B01G291500 chr1D 87.997 2516 179 54 325 2786 379510516 379508070 0.000000e+00 2859
5 TraesCS1B01G291500 chr1A 90.470 1427 87 23 1189 2588 480605602 480604198 0.000000e+00 1836
6 TraesCS1B01G291500 chr1A 87.523 545 34 13 620 1142 480606130 480605598 1.760000e-167 599
7 TraesCS1B01G291500 chr2D 96.734 643 18 2 2789 3429 472466367 472465726 0.000000e+00 1068
8 TraesCS1B01G291500 chr2A 96.729 642 19 2 2789 3429 733215475 733214835 0.000000e+00 1068
9 TraesCS1B01G291500 chrUn 96.865 638 18 2 2791 3428 2801437 2800802 0.000000e+00 1066
10 TraesCS1B01G291500 chrUn 96.865 638 18 2 2791 3428 2809460 2808825 0.000000e+00 1066
11 TraesCS1B01G291500 chrUn 96.215 317 10 2 1 317 298657615 298657301 5.070000e-143 518
12 TraesCS1B01G291500 chrUn 96.215 317 10 2 1 317 311035981 311036295 5.070000e-143 518
13 TraesCS1B01G291500 chrUn 96.215 317 10 2 1 317 311052372 311052058 5.070000e-143 518
14 TraesCS1B01G291500 chrUn 96.215 317 10 2 1 317 344524581 344524895 5.070000e-143 518
15 TraesCS1B01G291500 chr3D 96.688 634 18 2 2793 3426 500594064 500594694 0.000000e+00 1051
16 TraesCS1B01G291500 chr4B 96.232 637 21 3 2791 3427 329087021 329087654 0.000000e+00 1040
17 TraesCS1B01G291500 chr3A 95.814 645 26 1 2785 3429 507633099 507633742 0.000000e+00 1040
18 TraesCS1B01G291500 chr3B 95.632 641 27 1 2789 3429 23728548 23727909 0.000000e+00 1027
19 TraesCS1B01G291500 chr3B 96.530 317 9 2 1 317 332320056 332320370 1.090000e-144 523
20 TraesCS1B01G291500 chr3B 96.530 317 8 3 1 317 349179303 349179616 3.920000e-144 521
21 TraesCS1B01G291500 chr3B 89.431 123 12 1 998 1119 22845148 22845026 1.650000e-33 154
22 TraesCS1B01G291500 chr6B 94.611 334 12 5 1 334 606894151 606894478 2.360000e-141 512


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G291500 chr1B 508706844 508710273 3429 True 6335.0 6335 100.0000 1 3430 1 chr1B.!!$R2 3429
1 TraesCS1B01G291500 chr1B 36834670 36835305 635 True 1066.0 1066 96.8650 2791 3428 1 chr1B.!!$R1 637
2 TraesCS1B01G291500 chr1D 379508070 379510516 2446 True 2859.0 2859 87.9970 325 2786 1 chr1D.!!$R1 2461
3 TraesCS1B01G291500 chr1A 480604198 480606130 1932 True 1217.5 1836 88.9965 620 2588 2 chr1A.!!$R1 1968
4 TraesCS1B01G291500 chr2D 472465726 472466367 641 True 1068.0 1068 96.7340 2789 3429 1 chr2D.!!$R1 640
5 TraesCS1B01G291500 chr2A 733214835 733215475 640 True 1068.0 1068 96.7290 2789 3429 1 chr2A.!!$R1 640
6 TraesCS1B01G291500 chrUn 2800802 2801437 635 True 1066.0 1066 96.8650 2791 3428 1 chrUn.!!$R1 637
7 TraesCS1B01G291500 chrUn 2808825 2809460 635 True 1066.0 1066 96.8650 2791 3428 1 chrUn.!!$R2 637
8 TraesCS1B01G291500 chr3D 500594064 500594694 630 False 1051.0 1051 96.6880 2793 3426 1 chr3D.!!$F1 633
9 TraesCS1B01G291500 chr4B 329087021 329087654 633 False 1040.0 1040 96.2320 2791 3427 1 chr4B.!!$F1 636
10 TraesCS1B01G291500 chr3A 507633099 507633742 643 False 1040.0 1040 95.8140 2785 3429 1 chr3A.!!$F1 644
11 TraesCS1B01G291500 chr3B 23727909 23728548 639 True 1027.0 1027 95.6320 2789 3429 1 chr3B.!!$R2 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.034337 GTTCGCACCCCTGTAACTCA 59.966 55.0 0.00 0.0 0.00 3.41 F
160 161 0.036388 CCCCTGTAACTCACACGCAT 60.036 55.0 0.00 0.0 32.33 4.73 F
203 204 0.317479 GCACCAAGACGTAGGACTGT 59.683 55.0 8.04 0.0 0.00 3.55 F
572 573 0.386352 CTGAAATGTGTGGCTGTGCG 60.386 55.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1402 0.605319 AGCGAACCCGATCTGCAAAA 60.605 50.000 0.00 0.0 38.22 2.44 R
1567 1607 0.668096 CGCGTGGTTAGTGCACCTTA 60.668 55.000 14.63 0.0 37.75 2.69 R
2136 2187 1.153568 GCTCCAGCACGCTGTATGA 60.154 57.895 17.31 7.2 42.15 2.15 R
2449 2500 0.322906 GAAAGTAAGCTGCCTGCCCT 60.323 55.000 0.00 0.0 44.23 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.725754 ATGGTCTTCGTGGCACTTT 57.274 47.368 16.72 0.00 0.00 2.66
19 20 2.851263 ATGGTCTTCGTGGCACTTTA 57.149 45.000 16.72 0.00 0.00 1.85
20 21 2.851263 TGGTCTTCGTGGCACTTTAT 57.149 45.000 16.72 0.00 0.00 1.40
21 22 2.422597 TGGTCTTCGTGGCACTTTATG 58.577 47.619 16.72 0.00 0.00 1.90
22 23 2.037902 TGGTCTTCGTGGCACTTTATGA 59.962 45.455 16.72 1.76 0.00 2.15
23 24 2.673368 GGTCTTCGTGGCACTTTATGAG 59.327 50.000 16.72 4.52 0.00 2.90
24 25 2.673368 GTCTTCGTGGCACTTTATGAGG 59.327 50.000 16.72 5.70 0.00 3.86
25 26 2.009774 CTTCGTGGCACTTTATGAGGG 58.990 52.381 16.72 0.00 0.00 4.30
32 33 1.669265 GCACTTTATGAGGGCGTTACC 59.331 52.381 0.00 0.00 46.55 2.85
33 34 2.937873 GCACTTTATGAGGGCGTTACCA 60.938 50.000 0.00 0.00 46.55 3.25
34 35 2.936498 CACTTTATGAGGGCGTTACCAG 59.064 50.000 0.00 0.00 42.05 4.00
35 36 2.570302 ACTTTATGAGGGCGTTACCAGT 59.430 45.455 0.00 0.00 42.05 4.00
36 37 3.770933 ACTTTATGAGGGCGTTACCAGTA 59.229 43.478 0.00 0.00 42.05 2.74
37 38 4.223477 ACTTTATGAGGGCGTTACCAGTAA 59.777 41.667 0.00 0.00 42.05 2.24
38 39 2.685850 ATGAGGGCGTTACCAGTAAC 57.314 50.000 10.09 10.09 42.05 2.50
39 40 0.609662 TGAGGGCGTTACCAGTAACC 59.390 55.000 13.61 7.56 41.66 2.85
40 41 0.107993 GAGGGCGTTACCAGTAACCC 60.108 60.000 13.61 14.26 41.66 4.11
41 42 1.078214 GGGCGTTACCAGTAACCCC 60.078 63.158 21.39 21.39 43.05 4.95
42 43 1.078214 GGCGTTACCAGTAACCCCC 60.078 63.158 13.61 10.79 41.66 5.40
43 44 1.556373 GGCGTTACCAGTAACCCCCT 61.556 60.000 13.61 0.00 41.66 4.79
44 45 0.392060 GCGTTACCAGTAACCCCCTG 60.392 60.000 13.61 2.60 41.66 4.45
45 46 1.269012 CGTTACCAGTAACCCCCTGA 58.731 55.000 13.61 0.00 41.66 3.86
46 47 1.066645 CGTTACCAGTAACCCCCTGAC 60.067 57.143 13.61 0.00 41.66 3.51
47 48 2.263545 GTTACCAGTAACCCCCTGACT 58.736 52.381 9.14 0.00 39.48 3.41
48 49 2.641321 GTTACCAGTAACCCCCTGACTT 59.359 50.000 9.14 0.00 39.48 3.01
49 50 2.727429 ACCAGTAACCCCCTGACTTA 57.273 50.000 0.00 0.00 31.38 2.24
50 51 2.994355 ACCAGTAACCCCCTGACTTAA 58.006 47.619 0.00 0.00 31.38 1.85
51 52 3.538387 ACCAGTAACCCCCTGACTTAAT 58.462 45.455 0.00 0.00 31.38 1.40
52 53 3.265995 ACCAGTAACCCCCTGACTTAATG 59.734 47.826 0.00 0.00 31.38 1.90
53 54 3.265995 CCAGTAACCCCCTGACTTAATGT 59.734 47.826 0.00 0.00 31.38 2.71
54 55 4.472108 CCAGTAACCCCCTGACTTAATGTA 59.528 45.833 0.00 0.00 31.38 2.29
55 56 5.425630 CAGTAACCCCCTGACTTAATGTAC 58.574 45.833 0.00 0.00 31.38 2.90
56 57 5.189145 CAGTAACCCCCTGACTTAATGTACT 59.811 44.000 0.00 0.00 31.38 2.73
57 58 5.789054 AGTAACCCCCTGACTTAATGTACTT 59.211 40.000 0.00 0.00 0.00 2.24
58 59 5.594199 AACCCCCTGACTTAATGTACTTT 57.406 39.130 0.00 0.00 0.00 2.66
59 60 6.707273 AACCCCCTGACTTAATGTACTTTA 57.293 37.500 0.00 0.00 0.00 1.85
60 61 6.707273 ACCCCCTGACTTAATGTACTTTAA 57.293 37.500 12.03 12.03 0.00 1.52
61 62 7.093965 ACCCCCTGACTTAATGTACTTTAAA 57.906 36.000 13.21 0.00 0.00 1.52
62 63 6.944290 ACCCCCTGACTTAATGTACTTTAAAC 59.056 38.462 13.21 10.99 0.00 2.01
63 64 6.376299 CCCCCTGACTTAATGTACTTTAAACC 59.624 42.308 13.21 9.23 0.00 3.27
64 65 6.943718 CCCCTGACTTAATGTACTTTAAACCA 59.056 38.462 13.21 12.16 0.00 3.67
65 66 7.614192 CCCCTGACTTAATGTACTTTAAACCAT 59.386 37.037 13.21 2.58 0.00 3.55
66 67 8.458843 CCCTGACTTAATGTACTTTAAACCATG 58.541 37.037 13.21 10.61 0.00 3.66
67 68 7.968405 CCTGACTTAATGTACTTTAAACCATGC 59.032 37.037 13.21 3.26 0.00 4.06
68 69 8.397575 TGACTTAATGTACTTTAAACCATGCA 57.602 30.769 13.21 0.00 0.00 3.96
69 70 9.019656 TGACTTAATGTACTTTAAACCATGCAT 57.980 29.630 13.21 0.00 0.00 3.96
75 76 7.987750 TGTACTTTAAACCATGCATAACTGA 57.012 32.000 0.00 0.00 0.00 3.41
76 77 8.039603 TGTACTTTAAACCATGCATAACTGAG 57.960 34.615 0.00 0.00 0.00 3.35
77 78 6.515272 ACTTTAAACCATGCATAACTGAGG 57.485 37.500 0.00 0.00 0.00 3.86
78 79 5.418840 ACTTTAAACCATGCATAACTGAGGG 59.581 40.000 0.00 0.00 0.00 4.30
79 80 1.767759 AACCATGCATAACTGAGGGC 58.232 50.000 0.00 0.00 0.00 5.19
80 81 0.106519 ACCATGCATAACTGAGGGCC 60.107 55.000 0.00 0.00 0.00 5.80
81 82 1.168407 CCATGCATAACTGAGGGCCG 61.168 60.000 0.00 0.00 0.00 6.13
82 83 1.149174 ATGCATAACTGAGGGCCGG 59.851 57.895 0.00 0.00 0.00 6.13
83 84 1.344953 ATGCATAACTGAGGGCCGGA 61.345 55.000 5.05 0.00 0.00 5.14
84 85 1.227674 GCATAACTGAGGGCCGGAG 60.228 63.158 5.05 0.00 0.00 4.63
108 109 4.705337 GTCTGGCGGACCTCTATATAAG 57.295 50.000 15.76 0.00 38.93 1.73
109 110 3.090037 TCTGGCGGACCTCTATATAAGC 58.910 50.000 0.00 0.00 36.63 3.09
110 111 2.166664 CTGGCGGACCTCTATATAAGCC 59.833 54.545 0.00 0.00 43.26 4.35
111 112 2.176889 GGCGGACCTCTATATAAGCCA 58.823 52.381 0.00 0.00 42.57 4.75
112 113 2.094130 GGCGGACCTCTATATAAGCCAC 60.094 54.545 0.00 0.00 42.57 5.01
113 114 2.094130 GCGGACCTCTATATAAGCCACC 60.094 54.545 0.00 0.00 0.00 4.61
114 115 2.496470 CGGACCTCTATATAAGCCACCC 59.504 54.545 0.00 0.00 0.00 4.61
115 116 2.838813 GGACCTCTATATAAGCCACCCC 59.161 54.545 0.00 0.00 0.00 4.95
116 117 2.838813 GACCTCTATATAAGCCACCCCC 59.161 54.545 0.00 0.00 0.00 5.40
133 134 0.912486 CCCCCTCCTCAGTGTAAAGG 59.088 60.000 0.00 0.00 0.00 3.11
134 135 0.912486 CCCCTCCTCAGTGTAAAGGG 59.088 60.000 15.42 15.42 45.34 3.95
135 136 1.657804 CCCTCCTCAGTGTAAAGGGT 58.342 55.000 14.59 0.00 41.56 4.34
136 137 1.985895 CCCTCCTCAGTGTAAAGGGTT 59.014 52.381 14.59 0.00 41.56 4.11
137 138 2.027100 CCCTCCTCAGTGTAAAGGGTTC 60.027 54.545 14.59 0.00 41.56 3.62
138 139 2.353803 CCTCCTCAGTGTAAAGGGTTCG 60.354 54.545 0.00 0.00 33.21 3.95
139 140 1.001633 TCCTCAGTGTAAAGGGTTCGC 59.998 52.381 0.00 0.00 33.21 4.70
140 141 1.270625 CCTCAGTGTAAAGGGTTCGCA 60.271 52.381 0.00 0.00 0.00 5.10
141 142 1.798813 CTCAGTGTAAAGGGTTCGCAC 59.201 52.381 0.00 0.00 0.00 5.34
142 143 0.872388 CAGTGTAAAGGGTTCGCACC 59.128 55.000 0.00 0.00 43.37 5.01
150 151 3.976758 GGTTCGCACCCCTGTAAC 58.023 61.111 0.00 0.00 37.03 2.50
151 152 1.373812 GGTTCGCACCCCTGTAACT 59.626 57.895 0.00 0.00 37.03 2.24
152 153 0.672711 GGTTCGCACCCCTGTAACTC 60.673 60.000 0.00 0.00 37.03 3.01
153 154 0.034337 GTTCGCACCCCTGTAACTCA 59.966 55.000 0.00 0.00 0.00 3.41
154 155 0.034337 TTCGCACCCCTGTAACTCAC 59.966 55.000 0.00 0.00 0.00 3.51
155 156 1.116536 TCGCACCCCTGTAACTCACA 61.117 55.000 0.00 0.00 35.30 3.58
156 157 0.949105 CGCACCCCTGTAACTCACAC 60.949 60.000 0.00 0.00 32.33 3.82
157 158 0.949105 GCACCCCTGTAACTCACACG 60.949 60.000 0.00 0.00 32.33 4.49
158 159 0.949105 CACCCCTGTAACTCACACGC 60.949 60.000 0.00 0.00 32.33 5.34
159 160 1.369692 CCCCTGTAACTCACACGCA 59.630 57.895 0.00 0.00 32.33 5.24
160 161 0.036388 CCCCTGTAACTCACACGCAT 60.036 55.000 0.00 0.00 32.33 4.73
161 162 1.206132 CCCCTGTAACTCACACGCATA 59.794 52.381 0.00 0.00 32.33 3.14
162 163 2.158957 CCCCTGTAACTCACACGCATAT 60.159 50.000 0.00 0.00 32.33 1.78
163 164 3.069016 CCCCTGTAACTCACACGCATATA 59.931 47.826 0.00 0.00 32.33 0.86
164 165 4.442332 CCCCTGTAACTCACACGCATATAA 60.442 45.833 0.00 0.00 32.33 0.98
165 166 5.297547 CCCTGTAACTCACACGCATATAAT 58.702 41.667 0.00 0.00 32.33 1.28
166 167 5.405571 CCCTGTAACTCACACGCATATAATC 59.594 44.000 0.00 0.00 32.33 1.75
167 168 5.405571 CCTGTAACTCACACGCATATAATCC 59.594 44.000 0.00 0.00 32.33 3.01
168 169 5.908341 TGTAACTCACACGCATATAATCCA 58.092 37.500 0.00 0.00 30.04 3.41
169 170 5.983118 TGTAACTCACACGCATATAATCCAG 59.017 40.000 0.00 0.00 30.04 3.86
170 171 4.672587 ACTCACACGCATATAATCCAGT 57.327 40.909 0.00 0.00 0.00 4.00
171 172 4.621991 ACTCACACGCATATAATCCAGTC 58.378 43.478 0.00 0.00 0.00 3.51
172 173 3.638484 TCACACGCATATAATCCAGTCG 58.362 45.455 0.00 0.00 0.00 4.18
173 174 3.316868 TCACACGCATATAATCCAGTCGA 59.683 43.478 0.00 0.00 0.00 4.20
174 175 3.425525 CACACGCATATAATCCAGTCGAC 59.574 47.826 7.70 7.70 0.00 4.20
175 176 2.987149 CACGCATATAATCCAGTCGACC 59.013 50.000 13.01 0.00 0.00 4.79
176 177 2.251040 CGCATATAATCCAGTCGACCG 58.749 52.381 13.01 0.70 0.00 4.79
177 178 1.993370 GCATATAATCCAGTCGACCGC 59.007 52.381 13.01 0.00 0.00 5.68
178 179 2.607187 CATATAATCCAGTCGACCGCC 58.393 52.381 13.01 0.00 0.00 6.13
179 180 1.991121 TATAATCCAGTCGACCGCCT 58.009 50.000 13.01 0.00 0.00 5.52
180 181 0.674534 ATAATCCAGTCGACCGCCTC 59.325 55.000 13.01 0.00 0.00 4.70
181 182 1.389609 TAATCCAGTCGACCGCCTCC 61.390 60.000 13.01 0.00 0.00 4.30
200 201 4.592426 GGCACCAAGACGTAGGAC 57.408 61.111 8.04 0.64 0.00 3.85
201 202 1.972978 GGCACCAAGACGTAGGACT 59.027 57.895 8.04 0.00 0.00 3.85
202 203 0.389948 GGCACCAAGACGTAGGACTG 60.390 60.000 8.04 0.00 0.00 3.51
203 204 0.317479 GCACCAAGACGTAGGACTGT 59.683 55.000 8.04 0.00 0.00 3.55
204 205 1.270147 GCACCAAGACGTAGGACTGTT 60.270 52.381 8.04 0.00 0.00 3.16
205 206 2.029649 GCACCAAGACGTAGGACTGTTA 60.030 50.000 8.04 0.00 0.00 2.41
206 207 3.572584 CACCAAGACGTAGGACTGTTAC 58.427 50.000 8.04 0.00 0.00 2.50
207 208 3.255149 CACCAAGACGTAGGACTGTTACT 59.745 47.826 8.04 0.00 0.00 2.24
208 209 3.893813 ACCAAGACGTAGGACTGTTACTT 59.106 43.478 8.04 0.00 0.00 2.24
209 210 4.022503 ACCAAGACGTAGGACTGTTACTTC 60.023 45.833 8.04 0.00 0.00 3.01
210 211 4.483311 CAAGACGTAGGACTGTTACTTCC 58.517 47.826 0.00 0.00 0.00 3.46
211 212 4.031636 AGACGTAGGACTGTTACTTCCT 57.968 45.455 10.22 10.22 44.82 3.36
212 213 4.009002 AGACGTAGGACTGTTACTTCCTC 58.991 47.826 8.94 2.71 41.63 3.71
213 214 3.087781 ACGTAGGACTGTTACTTCCTCC 58.912 50.000 8.94 0.00 41.63 4.30
214 215 2.097142 CGTAGGACTGTTACTTCCTCCG 59.903 54.545 8.94 6.74 41.63 4.63
215 216 2.599408 AGGACTGTTACTTCCTCCGA 57.401 50.000 1.06 0.00 37.77 4.55
216 217 2.448453 AGGACTGTTACTTCCTCCGAG 58.552 52.381 1.06 0.00 37.77 4.63
217 218 2.041350 AGGACTGTTACTTCCTCCGAGA 59.959 50.000 0.00 0.00 37.77 4.04
218 219 2.824341 GGACTGTTACTTCCTCCGAGAA 59.176 50.000 0.00 0.00 0.00 2.87
220 221 2.826725 ACTGTTACTTCCTCCGAGAAGG 59.173 50.000 12.46 4.01 46.24 3.46
221 222 2.166664 CTGTTACTTCCTCCGAGAAGGG 59.833 54.545 12.46 0.00 46.24 3.95
222 223 1.134759 GTTACTTCCTCCGAGAAGGGC 60.135 57.143 12.46 0.00 46.24 5.19
223 224 0.686769 TACTTCCTCCGAGAAGGGCC 60.687 60.000 0.00 0.00 46.24 5.80
224 225 1.687493 CTTCCTCCGAGAAGGGCCT 60.687 63.158 0.00 0.00 39.71 5.19
225 226 1.965754 CTTCCTCCGAGAAGGGCCTG 61.966 65.000 6.92 0.00 39.71 4.85
226 227 2.364317 CCTCCGAGAAGGGCCTGA 60.364 66.667 6.92 0.00 41.52 3.86
227 228 1.990060 CCTCCGAGAAGGGCCTGAA 60.990 63.158 6.92 0.00 41.52 3.02
228 229 1.219393 CTCCGAGAAGGGCCTGAAC 59.781 63.158 6.92 1.62 41.52 3.18
229 230 1.229209 TCCGAGAAGGGCCTGAACT 60.229 57.895 6.92 7.41 41.52 3.01
230 231 1.219393 CCGAGAAGGGCCTGAACTC 59.781 63.158 6.92 15.44 35.97 3.01
231 232 1.153745 CGAGAAGGGCCTGAACTCG 60.154 63.158 29.13 29.13 42.77 4.18
232 233 1.878656 CGAGAAGGGCCTGAACTCGT 61.879 60.000 31.25 9.99 43.19 4.18
233 234 1.183549 GAGAAGGGCCTGAACTCGTA 58.816 55.000 6.92 0.00 0.00 3.43
234 235 1.549170 GAGAAGGGCCTGAACTCGTAA 59.451 52.381 6.92 0.00 0.00 3.18
235 236 1.975680 AGAAGGGCCTGAACTCGTAAA 59.024 47.619 6.92 0.00 0.00 2.01
236 237 2.370849 AGAAGGGCCTGAACTCGTAAAA 59.629 45.455 6.92 0.00 0.00 1.52
237 238 2.180432 AGGGCCTGAACTCGTAAAAC 57.820 50.000 4.50 0.00 0.00 2.43
238 239 1.697982 AGGGCCTGAACTCGTAAAACT 59.302 47.619 4.50 0.00 0.00 2.66
239 240 2.074576 GGGCCTGAACTCGTAAAACTC 58.925 52.381 0.84 0.00 0.00 3.01
240 241 2.289506 GGGCCTGAACTCGTAAAACTCT 60.290 50.000 0.84 0.00 0.00 3.24
241 242 3.400255 GGCCTGAACTCGTAAAACTCTT 58.600 45.455 0.00 0.00 0.00 2.85
242 243 3.186613 GGCCTGAACTCGTAAAACTCTTG 59.813 47.826 0.00 0.00 0.00 3.02
243 244 3.364068 GCCTGAACTCGTAAAACTCTTGC 60.364 47.826 0.00 0.00 0.00 4.01
244 245 3.120991 CCTGAACTCGTAAAACTCTTGCG 60.121 47.826 0.00 0.00 0.00 4.85
245 246 3.450578 TGAACTCGTAAAACTCTTGCGT 58.549 40.909 0.00 0.00 0.00 5.24
246 247 3.244345 TGAACTCGTAAAACTCTTGCGTG 59.756 43.478 0.00 0.00 0.00 5.34
247 248 2.817901 ACTCGTAAAACTCTTGCGTGT 58.182 42.857 0.00 0.00 0.00 4.49
248 249 3.968649 ACTCGTAAAACTCTTGCGTGTA 58.031 40.909 1.80 0.00 0.00 2.90
249 250 3.732721 ACTCGTAAAACTCTTGCGTGTAC 59.267 43.478 1.80 0.00 0.00 2.90
250 251 3.704512 TCGTAAAACTCTTGCGTGTACA 58.295 40.909 0.00 0.00 0.00 2.90
251 252 4.111198 TCGTAAAACTCTTGCGTGTACAA 58.889 39.130 0.00 0.00 0.00 2.41
252 253 4.026640 TCGTAAAACTCTTGCGTGTACAAC 60.027 41.667 0.00 0.00 0.00 3.32
253 254 4.026310 CGTAAAACTCTTGCGTGTACAACT 60.026 41.667 0.00 0.00 0.00 3.16
254 255 5.173673 CGTAAAACTCTTGCGTGTACAACTA 59.826 40.000 0.00 0.00 0.00 2.24
255 256 5.399604 AAAACTCTTGCGTGTACAACTAC 57.600 39.130 0.00 0.00 0.00 2.73
256 257 4.317671 AACTCTTGCGTGTACAACTACT 57.682 40.909 0.00 0.00 0.00 2.57
257 258 3.898529 ACTCTTGCGTGTACAACTACTC 58.101 45.455 0.00 0.00 0.00 2.59
258 259 3.243336 CTCTTGCGTGTACAACTACTCC 58.757 50.000 0.00 0.00 0.00 3.85
259 260 2.624364 TCTTGCGTGTACAACTACTCCA 59.376 45.455 0.00 0.00 0.00 3.86
260 261 3.257375 TCTTGCGTGTACAACTACTCCAT 59.743 43.478 0.00 0.00 0.00 3.41
261 262 4.460034 TCTTGCGTGTACAACTACTCCATA 59.540 41.667 0.00 0.00 0.00 2.74
262 263 4.365899 TGCGTGTACAACTACTCCATAG 57.634 45.455 0.00 0.00 36.89 2.23
263 264 3.114065 GCGTGTACAACTACTCCATAGC 58.886 50.000 0.00 0.00 33.73 2.97
264 265 3.181489 GCGTGTACAACTACTCCATAGCT 60.181 47.826 0.00 0.00 33.73 3.32
265 266 4.036027 GCGTGTACAACTACTCCATAGCTA 59.964 45.833 0.00 0.00 33.73 3.32
266 267 5.749620 CGTGTACAACTACTCCATAGCTAG 58.250 45.833 0.00 0.00 33.73 3.42
267 268 5.277876 CGTGTACAACTACTCCATAGCTAGG 60.278 48.000 0.00 0.00 33.73 3.02
268 269 5.826737 GTGTACAACTACTCCATAGCTAGGA 59.173 44.000 7.04 9.11 33.73 2.94
269 270 6.490721 GTGTACAACTACTCCATAGCTAGGAT 59.509 42.308 7.04 3.93 33.99 3.24
270 271 6.715718 TGTACAACTACTCCATAGCTAGGATC 59.284 42.308 7.04 0.00 33.99 3.36
271 272 5.959512 ACAACTACTCCATAGCTAGGATCT 58.040 41.667 7.04 1.88 33.99 2.75
272 273 6.377912 ACAACTACTCCATAGCTAGGATCTT 58.622 40.000 7.04 1.36 33.99 2.40
273 274 6.266558 ACAACTACTCCATAGCTAGGATCTTG 59.733 42.308 7.04 10.26 33.99 3.02
274 275 4.770010 ACTACTCCATAGCTAGGATCTTGC 59.230 45.833 7.04 0.00 33.99 4.01
275 276 2.903135 ACTCCATAGCTAGGATCTTGCC 59.097 50.000 7.04 0.00 33.03 4.52
276 277 3.172339 CTCCATAGCTAGGATCTTGCCT 58.828 50.000 7.04 0.00 42.15 4.75
277 278 3.169099 TCCATAGCTAGGATCTTGCCTC 58.831 50.000 7.04 0.00 39.50 4.70
278 279 3.172339 CCATAGCTAGGATCTTGCCTCT 58.828 50.000 7.04 0.00 39.50 3.69
279 280 3.195396 CCATAGCTAGGATCTTGCCTCTC 59.805 52.174 7.04 0.00 39.50 3.20
280 281 1.715785 AGCTAGGATCTTGCCTCTCC 58.284 55.000 0.00 0.00 39.50 3.71
281 282 1.220236 AGCTAGGATCTTGCCTCTCCT 59.780 52.381 0.00 0.00 42.11 3.69
282 283 2.046292 GCTAGGATCTTGCCTCTCCTT 58.954 52.381 0.00 0.00 39.99 3.36
283 284 2.437651 GCTAGGATCTTGCCTCTCCTTT 59.562 50.000 0.00 0.00 39.99 3.11
284 285 3.643792 GCTAGGATCTTGCCTCTCCTTTA 59.356 47.826 0.00 0.00 39.99 1.85
285 286 4.262420 GCTAGGATCTTGCCTCTCCTTTAG 60.262 50.000 0.00 0.00 39.99 1.85
286 287 3.730269 AGGATCTTGCCTCTCCTTTAGT 58.270 45.455 0.00 0.00 35.90 2.24
287 288 4.884961 AGGATCTTGCCTCTCCTTTAGTA 58.115 43.478 0.00 0.00 35.90 1.82
288 289 4.651962 AGGATCTTGCCTCTCCTTTAGTAC 59.348 45.833 0.00 0.00 35.90 2.73
289 290 4.202274 GGATCTTGCCTCTCCTTTAGTACC 60.202 50.000 0.00 0.00 0.00 3.34
290 291 3.105283 TCTTGCCTCTCCTTTAGTACCC 58.895 50.000 0.00 0.00 0.00 3.69
291 292 1.875488 TGCCTCTCCTTTAGTACCCC 58.125 55.000 0.00 0.00 0.00 4.95
292 293 1.129917 GCCTCTCCTTTAGTACCCCC 58.870 60.000 0.00 0.00 0.00 5.40
308 309 2.526888 CCCCCTACACTACTGTCAGA 57.473 55.000 6.91 0.00 0.00 3.27
309 310 2.100989 CCCCCTACACTACTGTCAGAC 58.899 57.143 6.91 0.00 0.00 3.51
310 311 2.291670 CCCCCTACACTACTGTCAGACT 60.292 54.545 6.91 0.00 0.00 3.24
311 312 3.432378 CCCCTACACTACTGTCAGACTT 58.568 50.000 6.91 0.00 0.00 3.01
312 313 4.569228 CCCCCTACACTACTGTCAGACTTA 60.569 50.000 6.91 0.00 0.00 2.24
313 314 4.641094 CCCCTACACTACTGTCAGACTTAG 59.359 50.000 6.91 5.32 0.00 2.18
314 315 5.498393 CCCTACACTACTGTCAGACTTAGA 58.502 45.833 6.91 0.00 0.00 2.10
315 316 5.944599 CCCTACACTACTGTCAGACTTAGAA 59.055 44.000 6.91 2.57 0.00 2.10
316 317 6.127952 CCCTACACTACTGTCAGACTTAGAAC 60.128 46.154 6.91 0.00 0.00 3.01
317 318 5.359716 ACACTACTGTCAGACTTAGAACG 57.640 43.478 6.91 6.81 0.00 3.95
318 319 4.159857 CACTACTGTCAGACTTAGAACGC 58.840 47.826 6.91 0.00 0.00 4.84
319 320 2.333389 ACTGTCAGACTTAGAACGCG 57.667 50.000 3.53 3.53 0.00 6.01
320 321 1.068472 ACTGTCAGACTTAGAACGCGG 60.068 52.381 12.47 0.00 0.00 6.46
321 322 1.199327 CTGTCAGACTTAGAACGCGGA 59.801 52.381 12.47 0.00 0.00 5.54
322 323 1.199327 TGTCAGACTTAGAACGCGGAG 59.801 52.381 12.47 2.50 0.00 4.63
343 344 2.268920 GAGGCAAGGATGGTCGCA 59.731 61.111 0.00 0.00 0.00 5.10
344 345 2.045926 AGGCAAGGATGGTCGCAC 60.046 61.111 0.00 0.00 0.00 5.34
349 350 1.376424 AAGGATGGTCGCACAGCAG 60.376 57.895 0.00 0.00 35.45 4.24
350 351 2.809861 AAGGATGGTCGCACAGCAGG 62.810 60.000 0.00 0.00 35.45 4.85
378 379 1.945354 ATGACGTCCGGCGACTGATT 61.945 55.000 22.10 1.50 44.77 2.57
379 380 1.445582 GACGTCCGGCGACTGATTT 60.446 57.895 22.10 0.83 44.77 2.17
380 381 1.683790 GACGTCCGGCGACTGATTTG 61.684 60.000 22.10 0.00 44.77 2.32
385 386 2.331893 CGGCGACTGATTTGGCCAA 61.332 57.895 16.05 16.05 45.85 4.52
387 388 1.523154 GGCGACTGATTTGGCCAACA 61.523 55.000 20.35 13.38 44.91 3.33
396 397 2.079170 TTTGGCCAACAAGTGATCCA 57.921 45.000 20.35 0.00 40.82 3.41
400 401 2.291735 TGGCCAACAAGTGATCCATCAT 60.292 45.455 0.61 0.00 39.30 2.45
421 422 5.879777 TCATGCTCGGACTTTGATTTCATTA 59.120 36.000 0.00 0.00 0.00 1.90
462 463 7.809331 TGTCTAGCTATGATTTGTTTTGCTTTG 59.191 33.333 0.00 0.00 0.00 2.77
464 465 8.359642 TCTAGCTATGATTTGTTTTGCTTTGTT 58.640 29.630 0.00 0.00 0.00 2.83
465 466 9.624697 CTAGCTATGATTTGTTTTGCTTTGTTA 57.375 29.630 0.00 0.00 0.00 2.41
476 477 9.994432 TTGTTTTGCTTTGTTATATTTGTTTGG 57.006 25.926 0.00 0.00 0.00 3.28
501 502 6.454795 GGACCTTTGAATTGTGCTGAATTTA 58.545 36.000 0.00 0.00 0.00 1.40
509 510 9.926158 TTGAATTGTGCTGAATTTATGTTGTAT 57.074 25.926 0.00 0.00 0.00 2.29
511 512 8.706492 AATTGTGCTGAATTTATGTTGTATGG 57.294 30.769 0.00 0.00 0.00 2.74
512 513 6.832520 TGTGCTGAATTTATGTTGTATGGT 57.167 33.333 0.00 0.00 0.00 3.55
516 517 6.542005 TGCTGAATTTATGTTGTATGGTCGAT 59.458 34.615 0.00 0.00 0.00 3.59
519 520 8.950208 TGAATTTATGTTGTATGGTCGATGTA 57.050 30.769 0.00 0.00 0.00 2.29
520 521 9.040939 TGAATTTATGTTGTATGGTCGATGTAG 57.959 33.333 0.00 0.00 0.00 2.74
521 522 8.958119 AATTTATGTTGTATGGTCGATGTAGT 57.042 30.769 0.00 0.00 0.00 2.73
526 527 7.571080 TGTTGTATGGTCGATGTAGTACATA 57.429 36.000 15.77 0.47 39.27 2.29
530 531 8.229253 TGTATGGTCGATGTAGTACATAACTT 57.771 34.615 15.77 5.44 39.27 2.66
531 532 9.341078 TGTATGGTCGATGTAGTACATAACTTA 57.659 33.333 15.77 10.51 39.27 2.24
536 537 7.594015 GGTCGATGTAGTACATAACTTACATGG 59.406 40.741 15.77 7.00 39.27 3.66
544 545 8.420374 AGTACATAACTTACATGGATTTGACG 57.580 34.615 0.00 0.00 33.35 4.35
547 548 8.142994 ACATAACTTACATGGATTTGACGATC 57.857 34.615 0.00 0.00 0.00 3.69
557 558 4.191544 GGATTTGACGATCCACATCTGAA 58.808 43.478 0.00 0.00 44.15 3.02
562 563 3.934579 TGACGATCCACATCTGAAATGTG 59.065 43.478 10.47 10.47 46.49 3.21
568 569 3.211803 CACATCTGAAATGTGTGGCTG 57.788 47.619 9.46 0.00 43.11 4.85
570 571 2.555325 ACATCTGAAATGTGTGGCTGTG 59.445 45.455 0.00 0.00 0.00 3.66
572 573 0.386352 CTGAAATGTGTGGCTGTGCG 60.386 55.000 0.00 0.00 0.00 5.34
589 590 2.262572 GCGACAAGCCAAATAAGTGG 57.737 50.000 0.00 0.00 42.05 4.00
600 601 2.554032 CAAATAAGTGGCCATCCGATCC 59.446 50.000 9.72 0.00 34.14 3.36
610 611 2.846652 ATCCGATCCGACGCTGTCC 61.847 63.158 0.00 0.00 0.00 4.02
611 612 3.822192 CCGATCCGACGCTGTCCA 61.822 66.667 0.00 0.00 0.00 4.02
612 613 2.579787 CGATCCGACGCTGTCCAC 60.580 66.667 0.00 0.00 0.00 4.02
613 614 2.579787 GATCCGACGCTGTCCACG 60.580 66.667 0.00 0.00 0.00 4.94
628 629 4.265206 ACGGACCGTGTATAGGGG 57.735 61.111 21.02 0.00 39.18 4.79
629 630 1.614711 ACGGACCGTGTATAGGGGA 59.385 57.895 21.02 0.00 39.18 4.81
630 631 0.753111 ACGGACCGTGTATAGGGGAC 60.753 60.000 21.02 0.00 39.18 4.46
638 639 2.363038 CGTGTATAGGGGACGGATTTGA 59.637 50.000 0.00 0.00 0.00 2.69
640 641 3.387050 GTGTATAGGGGACGGATTTGACT 59.613 47.826 0.00 0.00 0.00 3.41
641 642 3.640029 TGTATAGGGGACGGATTTGACTC 59.360 47.826 0.00 0.00 0.00 3.36
649 650 1.377202 GGATTTGACTCCGGCTGCA 60.377 57.895 0.50 0.00 0.00 4.41
654 658 2.031163 GACTCCGGCTGCAGTTGT 59.969 61.111 16.64 7.20 0.00 3.32
659 663 1.165907 TCCGGCTGCAGTTGTTCTTG 61.166 55.000 16.64 0.00 0.00 3.02
778 782 0.531974 TTTGGCGTGTCTGTGTCCTC 60.532 55.000 0.00 0.00 0.00 3.71
779 783 2.048127 GGCGTGTCTGTGTCCTCC 60.048 66.667 0.00 0.00 0.00 4.30
780 784 2.734591 GCGTGTCTGTGTCCTCCA 59.265 61.111 0.00 0.00 0.00 3.86
781 785 1.373497 GCGTGTCTGTGTCCTCCAG 60.373 63.158 0.00 0.00 0.00 3.86
782 786 1.373497 CGTGTCTGTGTCCTCCAGC 60.373 63.158 0.00 0.00 0.00 4.85
848 852 1.134401 CATCACTGCCTCACCGGTAAT 60.134 52.381 6.87 0.00 34.25 1.89
911 915 3.490759 GCCCGTGCGAGTGTGATG 61.491 66.667 0.00 0.00 0.00 3.07
930 934 3.991536 GAGCACTCGGTCGCCTTCC 62.992 68.421 0.00 0.00 0.00 3.46
939 943 2.754658 TCGCCTTCCCTCGTCTCC 60.755 66.667 0.00 0.00 0.00 3.71
940 944 4.194720 CGCCTTCCCTCGTCTCCG 62.195 72.222 0.00 0.00 0.00 4.63
986 1013 2.680913 GCAAGTGCAGCAGGTACGG 61.681 63.158 0.00 0.00 41.59 4.02
992 1019 3.454573 CAGCAGGTACGGGCGGTA 61.455 66.667 0.19 0.19 38.48 4.02
993 1020 2.681064 AGCAGGTACGGGCGGTAA 60.681 61.111 6.48 0.00 38.48 2.85
994 1021 2.510012 GCAGGTACGGGCGGTAAC 60.510 66.667 11.92 11.92 39.22 2.50
1135 1162 2.102357 CGTACCTCGTCGCTGCAT 59.898 61.111 0.00 0.00 34.52 3.96
1147 1174 1.737236 TCGCTGCATACCAATTGACAC 59.263 47.619 7.12 0.00 0.00 3.67
1148 1175 1.739466 CGCTGCATACCAATTGACACT 59.261 47.619 7.12 0.00 0.00 3.55
1151 1178 3.181503 GCTGCATACCAATTGACACTGAG 60.182 47.826 7.12 0.00 0.00 3.35
1178 1205 2.139118 TCATGTCGAAAATGCGTGTGA 58.861 42.857 4.78 0.00 0.00 3.58
1217 1244 1.060266 CTTCGCGCTGTCTGAATCTTG 59.940 52.381 5.56 0.00 0.00 3.02
1344 1378 1.702182 TGCATCAAAAGGCAGGACAA 58.298 45.000 0.00 0.00 37.25 3.18
1345 1379 1.340889 TGCATCAAAAGGCAGGACAAC 59.659 47.619 0.00 0.00 37.25 3.32
1353 1387 0.546122 AGGCAGGACAACAGACAACA 59.454 50.000 0.00 0.00 0.00 3.33
1354 1388 0.947244 GGCAGGACAACAGACAACAG 59.053 55.000 0.00 0.00 0.00 3.16
1355 1389 1.475034 GGCAGGACAACAGACAACAGA 60.475 52.381 0.00 0.00 0.00 3.41
1356 1390 1.599542 GCAGGACAACAGACAACAGAC 59.400 52.381 0.00 0.00 0.00 3.51
1357 1391 2.905075 CAGGACAACAGACAACAGACA 58.095 47.619 0.00 0.00 0.00 3.41
1358 1392 3.270027 CAGGACAACAGACAACAGACAA 58.730 45.455 0.00 0.00 0.00 3.18
1359 1393 3.063997 CAGGACAACAGACAACAGACAAC 59.936 47.826 0.00 0.00 0.00 3.32
1360 1394 2.354821 GGACAACAGACAACAGACAACC 59.645 50.000 0.00 0.00 0.00 3.77
1361 1395 3.006940 GACAACAGACAACAGACAACCA 58.993 45.455 0.00 0.00 0.00 3.67
1368 1402 1.138266 ACAACAGACAACCACTACGCT 59.862 47.619 0.00 0.00 0.00 5.07
1370 1404 2.612212 CAACAGACAACCACTACGCTTT 59.388 45.455 0.00 0.00 0.00 3.51
1387 1421 0.605319 TTTTGCAGATCGGGTTCGCT 60.605 50.000 0.00 0.00 36.13 4.93
1432 1466 3.545703 CATAACCAGCCGGAAAGATCTT 58.454 45.455 5.05 0.88 35.59 2.40
1507 1545 4.019051 TCCATCTGAACATTGTCCACTCAT 60.019 41.667 0.00 0.00 0.00 2.90
1639 1679 4.087892 CCAGGACCTGCAGACCGG 62.088 72.222 17.39 17.56 0.00 5.28
1694 1734 0.894835 TCTGACCGACTGCATTGCTA 59.105 50.000 10.49 0.00 0.00 3.49
1697 1737 0.391130 GACCGACTGCATTGCTACCA 60.391 55.000 10.49 0.00 0.00 3.25
1750 1798 1.126846 GCATTCTTCGTTCGTCAGGTG 59.873 52.381 0.00 0.00 0.00 4.00
2092 2143 3.016031 AGTGTGTTCAACAGTTCATGCA 58.984 40.909 0.00 0.00 39.56 3.96
2375 2426 2.461110 CCGCGGGAAATTCTGGACG 61.461 63.158 20.10 0.00 0.00 4.79
2420 2471 2.961741 CGAAGAAGAGATCTGGGATGGA 59.038 50.000 0.00 0.00 38.79 3.41
2426 2477 5.307716 AGAAGAGATCTGGGATGGAGAAATC 59.692 44.000 0.00 0.00 36.88 2.17
2435 2486 4.898265 TGGGATGGAGAAATCTAGTCTGAG 59.102 45.833 0.00 0.00 0.00 3.35
2438 2489 4.998671 TGGAGAAATCTAGTCTGAGCAG 57.001 45.455 0.00 0.00 0.00 4.24
2440 2491 4.774726 TGGAGAAATCTAGTCTGAGCAGTT 59.225 41.667 0.00 0.00 0.00 3.16
2441 2492 5.108517 GGAGAAATCTAGTCTGAGCAGTTG 58.891 45.833 0.00 0.00 0.00 3.16
2442 2493 4.502962 AGAAATCTAGTCTGAGCAGTTGC 58.497 43.478 0.00 0.00 42.49 4.17
2452 2503 4.785453 GCAGTTGCGGAGGGAGGG 62.785 72.222 0.00 0.00 0.00 4.30
2453 2504 4.785453 CAGTTGCGGAGGGAGGGC 62.785 72.222 0.00 0.00 0.00 5.19
2455 2506 4.785453 GTTGCGGAGGGAGGGCAG 62.785 72.222 0.00 0.00 38.04 4.85
2463 2514 3.411517 GGGAGGGCAGGCAGCTTA 61.412 66.667 0.81 0.00 44.79 3.09
2464 2515 2.124529 GGAGGGCAGGCAGCTTAC 60.125 66.667 0.81 0.00 44.79 2.34
2465 2516 2.674220 GGAGGGCAGGCAGCTTACT 61.674 63.158 0.81 0.00 44.79 2.24
2466 2517 1.301293 GAGGGCAGGCAGCTTACTT 59.699 57.895 0.81 0.00 44.79 2.24
2467 2518 0.322906 GAGGGCAGGCAGCTTACTTT 60.323 55.000 0.81 0.00 44.79 2.66
2468 2519 0.322906 AGGGCAGGCAGCTTACTTTC 60.323 55.000 0.81 0.00 44.79 2.62
2470 2521 0.955919 GGCAGGCAGCTTACTTTCGT 60.956 55.000 0.81 0.00 44.79 3.85
2471 2522 1.674817 GGCAGGCAGCTTACTTTCGTA 60.675 52.381 0.81 0.00 44.79 3.43
2472 2523 2.280628 GCAGGCAGCTTACTTTCGTAT 58.719 47.619 0.00 0.00 41.15 3.06
2473 2524 2.030946 GCAGGCAGCTTACTTTCGTATG 59.969 50.000 0.00 0.00 41.15 2.39
2474 2525 3.262420 CAGGCAGCTTACTTTCGTATGT 58.738 45.455 0.00 0.00 0.00 2.29
2475 2526 3.307242 CAGGCAGCTTACTTTCGTATGTC 59.693 47.826 0.00 0.00 0.00 3.06
2476 2527 2.281762 GGCAGCTTACTTTCGTATGTCG 59.718 50.000 0.00 0.00 41.41 4.35
2477 2528 2.281762 GCAGCTTACTTTCGTATGTCGG 59.718 50.000 0.00 0.00 40.32 4.79
2478 2529 3.766151 CAGCTTACTTTCGTATGTCGGA 58.234 45.455 0.00 0.00 40.32 4.55
2480 2531 3.114065 GCTTACTTTCGTATGTCGGAGG 58.886 50.000 0.00 0.00 40.32 4.30
2481 2532 3.181493 GCTTACTTTCGTATGTCGGAGGA 60.181 47.826 0.00 0.00 40.32 3.71
2482 2533 4.599047 CTTACTTTCGTATGTCGGAGGAG 58.401 47.826 0.00 0.00 40.32 3.69
2555 2606 3.278592 GAGCTTGGCTGCTGTTGGC 62.279 63.158 10.02 0.00 44.17 4.52
2590 2673 5.423015 TGAGTGATTTGAGTCCAGAATAGC 58.577 41.667 0.00 0.00 0.00 2.97
2596 2679 6.716628 TGATTTGAGTCCAGAATAGCTTTGTT 59.283 34.615 0.00 0.00 0.00 2.83
2597 2680 6.560253 TTTGAGTCCAGAATAGCTTTGTTC 57.440 37.500 0.00 0.00 0.00 3.18
2603 2686 4.780021 TCCAGAATAGCTTTGTTCTCCTCT 59.220 41.667 0.00 0.00 32.60 3.69
2606 2689 6.351371 CCAGAATAGCTTTGTTCTCCTCTGTA 60.351 42.308 0.00 0.00 32.60 2.74
2609 2692 8.325046 AGAATAGCTTTGTTCTCCTCTGTAATT 58.675 33.333 0.00 0.00 28.93 1.40
2610 2693 8.870075 AATAGCTTTGTTCTCCTCTGTAATTT 57.130 30.769 0.00 0.00 0.00 1.82
2651 2734 6.320926 TCAGTCAATCCAAAGTCATTGTGAAA 59.679 34.615 0.00 0.00 37.32 2.69
2675 2758 8.814038 AAAAAGAAGCAGATATAACAGTCCAT 57.186 30.769 0.00 0.00 0.00 3.41
2678 2761 6.893583 AGAAGCAGATATAACAGTCCATTGT 58.106 36.000 0.00 0.00 0.00 2.71
2692 2775 4.828939 AGTCCATTGTTGACATGTTGACAT 59.171 37.500 13.77 0.00 35.15 3.06
2696 2780 5.106752 CCATTGTTGACATGTTGACATACGA 60.107 40.000 13.77 2.78 34.26 3.43
2710 2794 3.987868 GACATACGAGTTGCAAGTTCTGA 59.012 43.478 8.48 0.00 0.00 3.27
2711 2795 4.377021 ACATACGAGTTGCAAGTTCTGAA 58.623 39.130 8.48 0.00 0.00 3.02
2716 2800 4.814234 ACGAGTTGCAAGTTCTGAATAACA 59.186 37.500 8.48 0.00 0.00 2.41
2718 2802 6.649141 ACGAGTTGCAAGTTCTGAATAACATA 59.351 34.615 8.48 0.00 0.00 2.29
2726 2810 7.590322 GCAAGTTCTGAATAACATATGCAGATG 59.410 37.037 19.49 19.49 36.52 2.90
2727 2811 7.199541 AGTTCTGAATAACATATGCAGATGC 57.800 36.000 20.90 5.16 42.50 3.91
2909 2993 7.425606 TGGAAAGAAAAAGATGCAGAAACTAC 58.574 34.615 0.00 0.00 0.00 2.73
3026 3113 8.244113 TCTGAGAAAAAGAAAACAAAGAAGACC 58.756 33.333 0.00 0.00 0.00 3.85
3027 3114 8.122472 TGAGAAAAAGAAAACAAAGAAGACCT 57.878 30.769 0.00 0.00 0.00 3.85
3054 3141 0.962356 CTCCGAACAAGCAGCCCAAT 60.962 55.000 0.00 0.00 0.00 3.16
3292 3379 2.710377 CGACACCATTGATTTCCCTGA 58.290 47.619 0.00 0.00 0.00 3.86
3429 3517 2.103263 AGCAAGAGAAAGACAGTCCGTT 59.897 45.455 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.851263 TAAAGTGCCACGAAGACCAT 57.149 45.000 0.00 0.00 0.00 3.55
2 3 2.673368 CTCATAAAGTGCCACGAAGACC 59.327 50.000 0.00 0.00 0.00 3.85
3 4 2.673368 CCTCATAAAGTGCCACGAAGAC 59.327 50.000 0.00 0.00 0.00 3.01
5 6 2.009774 CCCTCATAAAGTGCCACGAAG 58.990 52.381 0.00 0.00 0.00 3.79
6 7 1.948611 GCCCTCATAAAGTGCCACGAA 60.949 52.381 0.00 0.00 0.00 3.85
7 8 0.392461 GCCCTCATAAAGTGCCACGA 60.392 55.000 0.00 0.00 0.00 4.35
8 9 1.705337 CGCCCTCATAAAGTGCCACG 61.705 60.000 0.00 0.00 0.00 4.94
9 10 0.676782 ACGCCCTCATAAAGTGCCAC 60.677 55.000 0.00 0.00 0.00 5.01
10 11 0.037590 AACGCCCTCATAAAGTGCCA 59.962 50.000 0.00 0.00 0.00 4.92
11 12 1.669265 GTAACGCCCTCATAAAGTGCC 59.331 52.381 0.00 0.00 0.00 5.01
12 13 1.669265 GGTAACGCCCTCATAAAGTGC 59.331 52.381 0.00 0.00 0.00 4.40
13 14 2.936498 CTGGTAACGCCCTCATAAAGTG 59.064 50.000 0.00 0.00 42.51 3.16
14 15 2.570302 ACTGGTAACGCCCTCATAAAGT 59.430 45.455 0.00 0.00 42.51 2.66
15 16 3.261981 ACTGGTAACGCCCTCATAAAG 57.738 47.619 0.00 0.00 42.51 1.85
16 17 4.506758 GTTACTGGTAACGCCCTCATAAA 58.493 43.478 7.70 0.00 36.47 1.40
17 18 3.118665 GGTTACTGGTAACGCCCTCATAA 60.119 47.826 14.78 0.00 44.67 1.90
18 19 2.431782 GGTTACTGGTAACGCCCTCATA 59.568 50.000 14.78 0.00 44.67 2.15
19 20 1.208776 GGTTACTGGTAACGCCCTCAT 59.791 52.381 14.78 0.00 44.67 2.90
20 21 0.609662 GGTTACTGGTAACGCCCTCA 59.390 55.000 14.78 0.00 44.67 3.86
21 22 0.107993 GGGTTACTGGTAACGCCCTC 60.108 60.000 21.92 8.19 46.69 4.30
22 23 1.985614 GGGTTACTGGTAACGCCCT 59.014 57.895 21.92 0.00 46.69 5.19
23 24 4.623814 GGGTTACTGGTAACGCCC 57.376 61.111 21.92 13.55 46.69 6.13
26 27 1.066645 GTCAGGGGGTTACTGGTAACG 60.067 57.143 14.78 4.17 44.67 3.18
27 28 2.263545 AGTCAGGGGGTTACTGGTAAC 58.736 52.381 13.38 13.38 43.40 2.50
28 29 2.727429 AGTCAGGGGGTTACTGGTAA 57.273 50.000 0.00 0.00 36.62 2.85
29 30 2.727429 AAGTCAGGGGGTTACTGGTA 57.273 50.000 0.00 0.00 36.62 3.25
30 31 2.727429 TAAGTCAGGGGGTTACTGGT 57.273 50.000 0.00 0.00 36.62 4.00
31 32 3.265995 ACATTAAGTCAGGGGGTTACTGG 59.734 47.826 0.00 0.00 36.62 4.00
32 33 4.569719 ACATTAAGTCAGGGGGTTACTG 57.430 45.455 0.00 0.00 37.30 2.74
33 34 5.347978 AGTACATTAAGTCAGGGGGTTACT 58.652 41.667 0.00 0.00 0.00 2.24
34 35 5.688814 AGTACATTAAGTCAGGGGGTTAC 57.311 43.478 0.00 0.00 0.00 2.50
35 36 6.707273 AAAGTACATTAAGTCAGGGGGTTA 57.293 37.500 0.00 0.00 0.00 2.85
36 37 5.594199 AAAGTACATTAAGTCAGGGGGTT 57.406 39.130 0.00 0.00 0.00 4.11
37 38 6.707273 TTAAAGTACATTAAGTCAGGGGGT 57.293 37.500 0.00 0.00 0.00 4.95
38 39 6.376299 GGTTTAAAGTACATTAAGTCAGGGGG 59.624 42.308 3.74 0.00 0.00 5.40
39 40 6.943718 TGGTTTAAAGTACATTAAGTCAGGGG 59.056 38.462 3.74 0.00 0.00 4.79
40 41 7.989416 TGGTTTAAAGTACATTAAGTCAGGG 57.011 36.000 3.74 0.00 0.00 4.45
41 42 7.968405 GCATGGTTTAAAGTACATTAAGTCAGG 59.032 37.037 3.74 8.61 0.00 3.86
42 43 8.511321 TGCATGGTTTAAAGTACATTAAGTCAG 58.489 33.333 3.74 3.56 0.00 3.51
43 44 8.397575 TGCATGGTTTAAAGTACATTAAGTCA 57.602 30.769 3.74 6.82 0.00 3.41
49 50 9.019656 TCAGTTATGCATGGTTTAAAGTACATT 57.980 29.630 10.16 0.00 0.00 2.71
50 51 8.574251 TCAGTTATGCATGGTTTAAAGTACAT 57.426 30.769 10.16 0.00 0.00 2.29
51 52 7.120579 CCTCAGTTATGCATGGTTTAAAGTACA 59.879 37.037 10.16 0.00 0.00 2.90
52 53 7.415206 CCCTCAGTTATGCATGGTTTAAAGTAC 60.415 40.741 10.16 0.00 0.00 2.73
53 54 6.601613 CCCTCAGTTATGCATGGTTTAAAGTA 59.398 38.462 10.16 0.00 0.00 2.24
54 55 5.418840 CCCTCAGTTATGCATGGTTTAAAGT 59.581 40.000 10.16 0.00 0.00 2.66
55 56 5.679638 GCCCTCAGTTATGCATGGTTTAAAG 60.680 44.000 10.16 0.00 0.00 1.85
56 57 4.159506 GCCCTCAGTTATGCATGGTTTAAA 59.840 41.667 10.16 0.00 0.00 1.52
57 58 3.699038 GCCCTCAGTTATGCATGGTTTAA 59.301 43.478 10.16 0.00 0.00 1.52
58 59 3.287222 GCCCTCAGTTATGCATGGTTTA 58.713 45.455 10.16 0.00 0.00 2.01
59 60 2.102578 GCCCTCAGTTATGCATGGTTT 58.897 47.619 10.16 0.00 0.00 3.27
60 61 1.686115 GGCCCTCAGTTATGCATGGTT 60.686 52.381 10.16 0.00 0.00 3.67
61 62 0.106519 GGCCCTCAGTTATGCATGGT 60.107 55.000 10.16 0.00 0.00 3.55
62 63 1.168407 CGGCCCTCAGTTATGCATGG 61.168 60.000 10.16 0.42 0.00 3.66
63 64 1.168407 CCGGCCCTCAGTTATGCATG 61.168 60.000 10.16 0.00 0.00 4.06
64 65 1.149174 CCGGCCCTCAGTTATGCAT 59.851 57.895 3.79 3.79 0.00 3.96
65 66 1.971505 CTCCGGCCCTCAGTTATGCA 61.972 60.000 0.00 0.00 0.00 3.96
66 67 1.227674 CTCCGGCCCTCAGTTATGC 60.228 63.158 0.00 0.00 0.00 3.14
67 68 1.447643 CCTCCGGCCCTCAGTTATG 59.552 63.158 0.00 0.00 0.00 1.90
68 69 1.766461 CCCTCCGGCCCTCAGTTAT 60.766 63.158 0.00 0.00 0.00 1.89
69 70 2.365105 CCCTCCGGCCCTCAGTTA 60.365 66.667 0.00 0.00 0.00 2.24
87 88 3.119424 GCTTATATAGAGGTCCGCCAGAC 60.119 52.174 0.00 0.00 45.51 3.51
88 89 3.090037 GCTTATATAGAGGTCCGCCAGA 58.910 50.000 0.00 0.00 37.19 3.86
89 90 2.166664 GGCTTATATAGAGGTCCGCCAG 59.833 54.545 0.00 0.00 36.37 4.85
90 91 2.176889 GGCTTATATAGAGGTCCGCCA 58.823 52.381 0.00 0.00 36.37 5.69
91 92 2.094130 GTGGCTTATATAGAGGTCCGCC 60.094 54.545 0.00 0.00 36.85 6.13
92 93 2.094130 GGTGGCTTATATAGAGGTCCGC 60.094 54.545 0.00 0.00 0.00 5.54
93 94 2.496470 GGGTGGCTTATATAGAGGTCCG 59.504 54.545 0.00 0.00 0.00 4.79
94 95 2.838813 GGGGTGGCTTATATAGAGGTCC 59.161 54.545 0.00 0.00 0.00 4.46
95 96 2.838813 GGGGGTGGCTTATATAGAGGTC 59.161 54.545 0.00 0.00 0.00 3.85
96 97 2.917205 GGGGGTGGCTTATATAGAGGT 58.083 52.381 0.00 0.00 0.00 3.85
114 115 0.912486 CCTTTACACTGAGGAGGGGG 59.088 60.000 0.00 0.00 34.91 5.40
115 116 0.912486 CCCTTTACACTGAGGAGGGG 59.088 60.000 0.00 0.00 42.73 4.79
117 118 2.353803 CGAACCCTTTACACTGAGGAGG 60.354 54.545 0.00 0.00 34.91 4.30
118 119 2.931320 GCGAACCCTTTACACTGAGGAG 60.931 54.545 0.00 0.00 34.91 3.69
119 120 1.001633 GCGAACCCTTTACACTGAGGA 59.998 52.381 0.00 0.00 34.91 3.71
120 121 1.270625 TGCGAACCCTTTACACTGAGG 60.271 52.381 0.00 0.00 0.00 3.86
121 122 1.798813 GTGCGAACCCTTTACACTGAG 59.201 52.381 0.00 0.00 0.00 3.35
122 123 1.541670 GGTGCGAACCCTTTACACTGA 60.542 52.381 0.00 0.00 0.00 3.41
123 124 0.872388 GGTGCGAACCCTTTACACTG 59.128 55.000 0.00 0.00 0.00 3.66
124 125 0.250597 GGGTGCGAACCCTTTACACT 60.251 55.000 25.95 0.00 46.39 3.55
125 126 2.250646 GGGTGCGAACCCTTTACAC 58.749 57.895 25.95 0.00 46.39 2.90
126 127 4.804806 GGGTGCGAACCCTTTACA 57.195 55.556 25.95 0.00 46.39 2.41
133 134 0.672711 GAGTTACAGGGGTGCGAACC 60.673 60.000 2.96 2.96 0.00 3.62
134 135 0.034337 TGAGTTACAGGGGTGCGAAC 59.966 55.000 0.00 0.00 0.00 3.95
135 136 0.034337 GTGAGTTACAGGGGTGCGAA 59.966 55.000 0.00 0.00 0.00 4.70
136 137 1.116536 TGTGAGTTACAGGGGTGCGA 61.117 55.000 0.00 0.00 33.42 5.10
137 138 0.949105 GTGTGAGTTACAGGGGTGCG 60.949 60.000 0.00 0.00 40.69 5.34
138 139 0.949105 CGTGTGAGTTACAGGGGTGC 60.949 60.000 0.04 0.00 40.69 5.01
139 140 0.949105 GCGTGTGAGTTACAGGGGTG 60.949 60.000 9.45 0.00 43.56 4.61
140 141 1.370064 GCGTGTGAGTTACAGGGGT 59.630 57.895 9.45 0.00 43.56 4.95
141 142 0.036388 ATGCGTGTGAGTTACAGGGG 60.036 55.000 9.45 0.00 43.56 4.79
142 143 2.665649 TATGCGTGTGAGTTACAGGG 57.334 50.000 9.45 0.00 43.56 4.45
143 144 5.405571 GGATTATATGCGTGTGAGTTACAGG 59.594 44.000 3.54 3.54 45.54 4.00
144 145 5.983118 TGGATTATATGCGTGTGAGTTACAG 59.017 40.000 0.00 0.00 40.69 2.74
145 146 5.908341 TGGATTATATGCGTGTGAGTTACA 58.092 37.500 0.00 0.00 36.82 2.41
146 147 5.983720 ACTGGATTATATGCGTGTGAGTTAC 59.016 40.000 0.00 0.00 0.00 2.50
147 148 6.156748 ACTGGATTATATGCGTGTGAGTTA 57.843 37.500 0.00 0.00 0.00 2.24
148 149 5.023533 ACTGGATTATATGCGTGTGAGTT 57.976 39.130 0.00 0.00 0.00 3.01
149 150 4.621991 GACTGGATTATATGCGTGTGAGT 58.378 43.478 0.00 0.00 0.00 3.41
150 151 3.670523 CGACTGGATTATATGCGTGTGAG 59.329 47.826 0.00 0.00 0.00 3.51
151 152 3.316868 TCGACTGGATTATATGCGTGTGA 59.683 43.478 0.00 0.00 0.00 3.58
152 153 3.425525 GTCGACTGGATTATATGCGTGTG 59.574 47.826 8.70 0.00 0.00 3.82
153 154 3.552273 GGTCGACTGGATTATATGCGTGT 60.552 47.826 16.46 0.00 0.00 4.49
154 155 2.987149 GGTCGACTGGATTATATGCGTG 59.013 50.000 16.46 0.00 0.00 5.34
155 156 2.351447 CGGTCGACTGGATTATATGCGT 60.351 50.000 16.99 0.00 0.00 5.24
156 157 2.251040 CGGTCGACTGGATTATATGCG 58.749 52.381 16.99 2.27 0.00 4.73
157 158 1.993370 GCGGTCGACTGGATTATATGC 59.007 52.381 25.20 1.92 0.00 3.14
158 159 2.231478 AGGCGGTCGACTGGATTATATG 59.769 50.000 25.20 0.09 28.47 1.78
159 160 2.492484 GAGGCGGTCGACTGGATTATAT 59.508 50.000 25.20 0.00 30.74 0.86
160 161 1.884579 GAGGCGGTCGACTGGATTATA 59.115 52.381 25.20 0.00 30.74 0.98
161 162 0.674534 GAGGCGGTCGACTGGATTAT 59.325 55.000 25.20 0.92 30.74 1.28
162 163 1.389609 GGAGGCGGTCGACTGGATTA 61.390 60.000 25.20 0.00 30.74 1.75
163 164 2.722201 GGAGGCGGTCGACTGGATT 61.722 63.158 25.20 3.32 30.74 3.01
164 165 3.148279 GGAGGCGGTCGACTGGAT 61.148 66.667 25.20 5.10 30.74 3.41
178 179 2.558554 CTACGTCTTGGTGCCCGGAG 62.559 65.000 0.73 0.00 0.00 4.63
179 180 2.601067 TACGTCTTGGTGCCCGGA 60.601 61.111 0.73 0.00 0.00 5.14
180 181 2.125673 CTACGTCTTGGTGCCCGG 60.126 66.667 0.00 0.00 0.00 5.73
181 182 2.125673 CCTACGTCTTGGTGCCCG 60.126 66.667 0.00 0.00 0.00 6.13
182 183 1.079336 GTCCTACGTCTTGGTGCCC 60.079 63.158 0.00 0.00 0.00 5.36
183 184 0.389948 CAGTCCTACGTCTTGGTGCC 60.390 60.000 0.00 0.00 0.00 5.01
184 185 0.317479 ACAGTCCTACGTCTTGGTGC 59.683 55.000 0.00 0.00 0.00 5.01
185 186 2.814280 AACAGTCCTACGTCTTGGTG 57.186 50.000 0.00 0.00 0.00 4.17
186 187 3.494332 AGTAACAGTCCTACGTCTTGGT 58.506 45.455 0.00 0.00 0.00 3.67
187 188 4.483311 GAAGTAACAGTCCTACGTCTTGG 58.517 47.826 0.00 0.00 0.00 3.61
188 189 4.217983 AGGAAGTAACAGTCCTACGTCTTG 59.782 45.833 0.00 0.00 42.68 3.02
189 190 4.405548 AGGAAGTAACAGTCCTACGTCTT 58.594 43.478 0.00 0.00 42.68 3.01
190 191 4.009002 GAGGAAGTAACAGTCCTACGTCT 58.991 47.826 0.00 0.00 44.57 4.18
191 192 3.128415 GGAGGAAGTAACAGTCCTACGTC 59.872 52.174 0.00 0.00 44.57 4.34
192 193 3.087781 GGAGGAAGTAACAGTCCTACGT 58.912 50.000 0.00 0.00 44.57 3.57
193 194 3.779271 GGAGGAAGTAACAGTCCTACG 57.221 52.381 0.00 0.00 44.57 3.51
194 195 3.350833 TCGGAGGAAGTAACAGTCCTAC 58.649 50.000 0.00 0.00 44.57 3.18
195 196 3.265221 TCTCGGAGGAAGTAACAGTCCTA 59.735 47.826 4.96 0.00 44.57 2.94
197 198 2.444421 TCTCGGAGGAAGTAACAGTCC 58.556 52.381 4.96 0.00 0.00 3.85
198 199 3.119424 CCTTCTCGGAGGAAGTAACAGTC 60.119 52.174 4.96 0.00 40.56 3.51
199 200 2.826725 CCTTCTCGGAGGAAGTAACAGT 59.173 50.000 4.96 0.00 40.56 3.55
200 201 2.166664 CCCTTCTCGGAGGAAGTAACAG 59.833 54.545 4.96 0.00 40.56 3.16
201 202 2.176889 CCCTTCTCGGAGGAAGTAACA 58.823 52.381 4.96 0.00 40.56 2.41
202 203 1.134759 GCCCTTCTCGGAGGAAGTAAC 60.135 57.143 4.96 0.00 40.56 2.50
203 204 1.192428 GCCCTTCTCGGAGGAAGTAA 58.808 55.000 4.96 0.00 40.56 2.24
204 205 0.686769 GGCCCTTCTCGGAGGAAGTA 60.687 60.000 4.96 0.00 40.56 2.24
205 206 1.990614 GGCCCTTCTCGGAGGAAGT 60.991 63.158 4.96 0.00 40.56 3.01
206 207 1.687493 AGGCCCTTCTCGGAGGAAG 60.687 63.158 0.00 7.54 39.25 3.46
207 208 1.990060 CAGGCCCTTCTCGGAGGAA 60.990 63.158 0.00 0.00 39.25 3.36
208 209 2.364317 CAGGCCCTTCTCGGAGGA 60.364 66.667 0.00 0.00 39.25 3.71
209 210 1.990060 TTCAGGCCCTTCTCGGAGG 60.990 63.158 0.00 0.00 36.52 4.30
210 211 1.219393 GTTCAGGCCCTTCTCGGAG 59.781 63.158 0.00 0.00 33.16 4.63
211 212 1.229209 AGTTCAGGCCCTTCTCGGA 60.229 57.895 0.00 0.00 33.16 4.55
212 213 1.219393 GAGTTCAGGCCCTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
213 214 1.153745 CGAGTTCAGGCCCTTCTCG 60.154 63.158 17.87 17.87 41.02 4.04
214 215 1.183549 TACGAGTTCAGGCCCTTCTC 58.816 55.000 0.00 1.73 0.00 2.87
215 216 1.640917 TTACGAGTTCAGGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
216 217 2.467566 TTTACGAGTTCAGGCCCTTC 57.532 50.000 0.00 0.00 0.00 3.46
217 218 2.105993 AGTTTTACGAGTTCAGGCCCTT 59.894 45.455 0.00 0.00 0.00 3.95
218 219 1.697982 AGTTTTACGAGTTCAGGCCCT 59.302 47.619 0.00 0.00 0.00 5.19
219 220 2.074576 GAGTTTTACGAGTTCAGGCCC 58.925 52.381 0.00 0.00 0.00 5.80
220 221 3.041508 AGAGTTTTACGAGTTCAGGCC 57.958 47.619 0.00 0.00 0.00 5.19
221 222 3.364068 GCAAGAGTTTTACGAGTTCAGGC 60.364 47.826 0.00 0.00 0.00 4.85
222 223 3.120991 CGCAAGAGTTTTACGAGTTCAGG 60.121 47.826 0.00 0.00 43.02 3.86
223 224 3.489785 ACGCAAGAGTTTTACGAGTTCAG 59.510 43.478 0.00 0.00 43.62 3.02
224 225 3.244345 CACGCAAGAGTTTTACGAGTTCA 59.756 43.478 0.00 0.00 43.62 3.18
225 226 3.244579 ACACGCAAGAGTTTTACGAGTTC 59.755 43.478 0.00 0.00 38.22 3.01
226 227 3.192466 ACACGCAAGAGTTTTACGAGTT 58.808 40.909 0.00 0.00 38.22 3.01
227 228 2.817901 ACACGCAAGAGTTTTACGAGT 58.182 42.857 0.00 0.00 38.22 4.18
228 229 3.732219 TGTACACGCAAGAGTTTTACGAG 59.268 43.478 0.00 0.00 42.53 4.18
229 230 3.704512 TGTACACGCAAGAGTTTTACGA 58.295 40.909 0.00 0.00 42.53 3.43
230 231 4.026310 AGTTGTACACGCAAGAGTTTTACG 60.026 41.667 0.00 0.00 42.53 3.18
231 232 5.399604 AGTTGTACACGCAAGAGTTTTAC 57.600 39.130 0.00 0.00 42.53 2.01
232 233 6.275335 AGTAGTTGTACACGCAAGAGTTTTA 58.725 36.000 0.00 0.00 42.53 1.52
233 234 5.114081 AGTAGTTGTACACGCAAGAGTTTT 58.886 37.500 0.00 0.00 42.53 2.43
234 235 4.690122 AGTAGTTGTACACGCAAGAGTTT 58.310 39.130 0.00 0.00 42.53 2.66
235 236 4.296690 GAGTAGTTGTACACGCAAGAGTT 58.703 43.478 0.00 0.00 42.53 3.01
236 237 3.305199 GGAGTAGTTGTACACGCAAGAGT 60.305 47.826 0.00 0.00 45.26 3.24
237 238 3.243336 GGAGTAGTTGTACACGCAAGAG 58.757 50.000 0.00 0.00 43.62 2.85
238 239 2.624364 TGGAGTAGTTGTACACGCAAGA 59.376 45.455 0.00 0.00 43.62 3.02
239 240 6.685984 GCTATGGAGTAGTTGTACACGCAAG 61.686 48.000 0.00 0.00 36.59 4.01
240 241 3.671008 ATGGAGTAGTTGTACACGCAA 57.329 42.857 0.00 0.00 0.00 4.85
241 242 3.428452 GCTATGGAGTAGTTGTACACGCA 60.428 47.826 0.00 0.00 32.72 5.24
242 243 3.114065 GCTATGGAGTAGTTGTACACGC 58.886 50.000 0.00 0.00 32.72 5.34
243 244 4.634184 AGCTATGGAGTAGTTGTACACG 57.366 45.455 0.00 0.00 32.72 4.49
244 245 5.826737 TCCTAGCTATGGAGTAGTTGTACAC 59.173 44.000 0.00 0.00 32.72 2.90
245 246 6.009908 TCCTAGCTATGGAGTAGTTGTACA 57.990 41.667 7.59 0.00 32.72 2.90
246 247 6.943718 AGATCCTAGCTATGGAGTAGTTGTAC 59.056 42.308 14.62 0.00 36.99 2.90
247 248 7.092748 AGATCCTAGCTATGGAGTAGTTGTA 57.907 40.000 14.62 0.00 36.99 2.41
248 249 5.959512 AGATCCTAGCTATGGAGTAGTTGT 58.040 41.667 14.62 0.59 36.99 3.32
249 250 6.686630 CAAGATCCTAGCTATGGAGTAGTTG 58.313 44.000 14.62 11.42 36.99 3.16
250 251 5.245075 GCAAGATCCTAGCTATGGAGTAGTT 59.755 44.000 14.62 1.70 36.99 2.24
251 252 4.770010 GCAAGATCCTAGCTATGGAGTAGT 59.230 45.833 14.62 1.99 36.99 2.73
252 253 4.159506 GGCAAGATCCTAGCTATGGAGTAG 59.840 50.000 14.62 7.96 36.99 2.57
253 254 4.090090 GGCAAGATCCTAGCTATGGAGTA 58.910 47.826 14.62 0.00 36.99 2.59
254 255 2.903135 GGCAAGATCCTAGCTATGGAGT 59.097 50.000 14.62 5.18 36.99 3.85
255 256 3.172339 AGGCAAGATCCTAGCTATGGAG 58.828 50.000 14.62 5.47 36.99 3.86
256 257 3.169099 GAGGCAAGATCCTAGCTATGGA 58.831 50.000 12.51 12.51 36.38 3.41
257 258 3.172339 AGAGGCAAGATCCTAGCTATGG 58.828 50.000 0.00 0.00 36.38 2.74
258 259 3.195396 GGAGAGGCAAGATCCTAGCTATG 59.805 52.174 0.00 0.00 36.38 2.23
259 260 3.077391 AGGAGAGGCAAGATCCTAGCTAT 59.923 47.826 0.00 0.00 41.72 2.97
260 261 2.448961 AGGAGAGGCAAGATCCTAGCTA 59.551 50.000 0.00 0.00 41.72 3.32
261 262 1.220236 AGGAGAGGCAAGATCCTAGCT 59.780 52.381 0.00 0.00 41.72 3.32
262 263 1.715785 AGGAGAGGCAAGATCCTAGC 58.284 55.000 0.00 0.00 41.72 3.42
263 264 4.898861 ACTAAAGGAGAGGCAAGATCCTAG 59.101 45.833 0.09 0.00 42.72 3.02
264 265 4.884961 ACTAAAGGAGAGGCAAGATCCTA 58.115 43.478 0.09 0.00 42.72 2.94
265 266 3.730269 ACTAAAGGAGAGGCAAGATCCT 58.270 45.455 0.00 0.00 45.50 3.24
266 267 4.202274 GGTACTAAAGGAGAGGCAAGATCC 60.202 50.000 0.00 0.00 0.00 3.36
267 268 4.202274 GGGTACTAAAGGAGAGGCAAGATC 60.202 50.000 0.00 0.00 0.00 2.75
268 269 3.712218 GGGTACTAAAGGAGAGGCAAGAT 59.288 47.826 0.00 0.00 0.00 2.40
269 270 3.105283 GGGTACTAAAGGAGAGGCAAGA 58.895 50.000 0.00 0.00 0.00 3.02
270 271 2.170817 GGGGTACTAAAGGAGAGGCAAG 59.829 54.545 0.00 0.00 0.00 4.01
271 272 2.193993 GGGGTACTAAAGGAGAGGCAA 58.806 52.381 0.00 0.00 0.00 4.52
272 273 1.624391 GGGGGTACTAAAGGAGAGGCA 60.624 57.143 0.00 0.00 0.00 4.75
273 274 1.129917 GGGGGTACTAAAGGAGAGGC 58.870 60.000 0.00 0.00 0.00 4.70
289 290 2.100989 GTCTGACAGTAGTGTAGGGGG 58.899 57.143 2.39 0.00 36.88 5.40
290 291 3.088789 AGTCTGACAGTAGTGTAGGGG 57.911 52.381 10.88 0.00 36.88 4.79
291 292 5.498393 TCTAAGTCTGACAGTAGTGTAGGG 58.502 45.833 10.88 0.00 36.88 3.53
292 293 6.402334 CGTTCTAAGTCTGACAGTAGTGTAGG 60.402 46.154 10.88 0.00 36.88 3.18
293 294 6.535811 CGTTCTAAGTCTGACAGTAGTGTAG 58.464 44.000 10.88 2.46 36.88 2.74
294 295 5.106791 GCGTTCTAAGTCTGACAGTAGTGTA 60.107 44.000 10.88 0.00 36.88 2.90
295 296 4.320348 GCGTTCTAAGTCTGACAGTAGTGT 60.320 45.833 10.88 1.90 40.71 3.55
296 297 4.159857 GCGTTCTAAGTCTGACAGTAGTG 58.840 47.826 10.88 0.00 0.00 2.74
297 298 3.120269 CGCGTTCTAAGTCTGACAGTAGT 60.120 47.826 10.88 0.00 0.00 2.73
298 299 3.418094 CGCGTTCTAAGTCTGACAGTAG 58.582 50.000 10.88 10.72 0.00 2.57
299 300 2.161012 CCGCGTTCTAAGTCTGACAGTA 59.839 50.000 10.88 1.08 0.00 2.74
300 301 1.068472 CCGCGTTCTAAGTCTGACAGT 60.068 52.381 10.88 0.00 0.00 3.55
301 302 1.199327 TCCGCGTTCTAAGTCTGACAG 59.801 52.381 10.88 0.00 0.00 3.51
302 303 1.199327 CTCCGCGTTCTAAGTCTGACA 59.801 52.381 10.88 0.00 0.00 3.58
303 304 1.897641 CTCCGCGTTCTAAGTCTGAC 58.102 55.000 4.92 0.00 0.00 3.51
304 305 0.170561 GCTCCGCGTTCTAAGTCTGA 59.829 55.000 4.92 0.00 0.00 3.27
305 306 0.109272 TGCTCCGCGTTCTAAGTCTG 60.109 55.000 4.92 0.00 0.00 3.51
306 307 0.171455 CTGCTCCGCGTTCTAAGTCT 59.829 55.000 4.92 0.00 0.00 3.24
307 308 0.802607 CCTGCTCCGCGTTCTAAGTC 60.803 60.000 4.92 0.00 0.00 3.01
308 309 1.215647 CCTGCTCCGCGTTCTAAGT 59.784 57.895 4.92 0.00 0.00 2.24
309 310 0.526524 CTCCTGCTCCGCGTTCTAAG 60.527 60.000 4.92 0.00 0.00 2.18
310 311 1.511305 CTCCTGCTCCGCGTTCTAA 59.489 57.895 4.92 0.00 0.00 2.10
311 312 2.415608 CCTCCTGCTCCGCGTTCTA 61.416 63.158 4.92 0.00 0.00 2.10
312 313 3.764466 CCTCCTGCTCCGCGTTCT 61.764 66.667 4.92 0.00 0.00 3.01
318 319 2.739996 ATCCTTGCCTCCTGCTCCG 61.740 63.158 0.00 0.00 42.00 4.63
319 320 1.153005 CATCCTTGCCTCCTGCTCC 60.153 63.158 0.00 0.00 42.00 4.70
320 321 1.153005 CCATCCTTGCCTCCTGCTC 60.153 63.158 0.00 0.00 42.00 4.26
321 322 1.919600 GACCATCCTTGCCTCCTGCT 61.920 60.000 0.00 0.00 42.00 4.24
322 323 1.452833 GACCATCCTTGCCTCCTGC 60.453 63.158 0.00 0.00 41.77 4.85
323 324 1.153289 CGACCATCCTTGCCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
343 344 4.119363 ATCCATGCCGCCTGCTGT 62.119 61.111 0.00 0.00 42.00 4.40
344 345 3.592814 CATCCATGCCGCCTGCTG 61.593 66.667 0.00 0.00 42.00 4.41
349 350 3.272334 GACGTCATCCATGCCGCC 61.272 66.667 11.55 0.00 31.57 6.13
364 365 2.750888 GCCAAATCAGTCGCCGGAC 61.751 63.158 5.05 0.00 43.76 4.79
373 374 3.367703 GGATCACTTGTTGGCCAAATCAG 60.368 47.826 22.47 18.00 31.20 2.90
378 379 2.170166 GATGGATCACTTGTTGGCCAA 58.830 47.619 16.05 16.05 34.85 4.52
379 380 1.075212 TGATGGATCACTTGTTGGCCA 59.925 47.619 0.00 0.00 35.41 5.36
380 381 1.838112 TGATGGATCACTTGTTGGCC 58.162 50.000 0.00 0.00 0.00 5.36
385 386 2.558378 CGAGCATGATGGATCACTTGT 58.442 47.619 0.00 0.00 40.03 3.16
387 388 1.764723 TCCGAGCATGATGGATCACTT 59.235 47.619 0.00 0.00 40.03 3.16
396 397 4.264253 TGAAATCAAAGTCCGAGCATGAT 58.736 39.130 0.00 0.00 32.36 2.45
400 401 5.066375 CCATAATGAAATCAAAGTCCGAGCA 59.934 40.000 0.00 0.00 0.00 4.26
433 434 8.186821 AGCAAAACAAATCATAGCTAGACAATC 58.813 33.333 0.00 0.00 0.00 2.67
434 435 8.059798 AGCAAAACAAATCATAGCTAGACAAT 57.940 30.769 0.00 0.00 0.00 2.71
435 436 7.452880 AGCAAAACAAATCATAGCTAGACAA 57.547 32.000 0.00 0.00 0.00 3.18
439 440 8.524870 AACAAAGCAAAACAAATCATAGCTAG 57.475 30.769 0.00 0.00 0.00 3.42
462 463 7.234661 TCAAAGGTCCCCAAACAAATATAAC 57.765 36.000 0.00 0.00 0.00 1.89
464 465 8.317679 CAATTCAAAGGTCCCCAAACAAATATA 58.682 33.333 0.00 0.00 0.00 0.86
465 466 6.950860 ATTCAAAGGTCCCCAAACAAATAT 57.049 33.333 0.00 0.00 0.00 1.28
471 472 3.727726 CACAATTCAAAGGTCCCCAAAC 58.272 45.455 0.00 0.00 0.00 2.93
473 474 1.691434 GCACAATTCAAAGGTCCCCAA 59.309 47.619 0.00 0.00 0.00 4.12
474 475 1.133199 AGCACAATTCAAAGGTCCCCA 60.133 47.619 0.00 0.00 0.00 4.96
475 476 1.273327 CAGCACAATTCAAAGGTCCCC 59.727 52.381 0.00 0.00 0.00 4.81
476 477 2.238521 TCAGCACAATTCAAAGGTCCC 58.761 47.619 0.00 0.00 0.00 4.46
482 483 8.659925 ACAACATAAATTCAGCACAATTCAAA 57.340 26.923 0.00 0.00 0.00 2.69
489 490 6.403092 CGACCATACAACATAAATTCAGCACA 60.403 38.462 0.00 0.00 0.00 4.57
490 491 5.965334 CGACCATACAACATAAATTCAGCAC 59.035 40.000 0.00 0.00 0.00 4.40
493 494 7.919690 ACATCGACCATACAACATAAATTCAG 58.080 34.615 0.00 0.00 0.00 3.02
501 502 6.459670 TGTACTACATCGACCATACAACAT 57.540 37.500 0.00 0.00 0.00 2.71
509 510 7.628769 TGTAAGTTATGTACTACATCGACCA 57.371 36.000 4.90 0.00 39.88 4.02
511 512 8.347771 TCCATGTAAGTTATGTACTACATCGAC 58.652 37.037 4.90 6.31 39.88 4.20
512 513 8.454570 TCCATGTAAGTTATGTACTACATCGA 57.545 34.615 4.90 0.00 39.88 3.59
519 520 8.255206 TCGTCAAATCCATGTAAGTTATGTACT 58.745 33.333 0.00 0.00 39.32 2.73
520 521 8.415192 TCGTCAAATCCATGTAAGTTATGTAC 57.585 34.615 0.00 0.00 0.00 2.90
521 522 9.256477 GATCGTCAAATCCATGTAAGTTATGTA 57.744 33.333 0.00 0.00 0.00 2.29
522 523 7.226720 GGATCGTCAAATCCATGTAAGTTATGT 59.773 37.037 0.00 0.00 44.04 2.29
536 537 5.801350 TTTCAGATGTGGATCGTCAAATC 57.199 39.130 0.00 0.00 34.73 2.17
553 554 0.386352 CGCACAGCCACACATTTCAG 60.386 55.000 0.00 0.00 0.00 3.02
557 558 1.100463 TTGTCGCACAGCCACACATT 61.100 50.000 0.00 0.00 0.00 2.71
562 563 4.030452 GGCTTGTCGCACAGCCAC 62.030 66.667 18.41 0.00 40.07 5.01
565 566 0.521291 TATTTGGCTTGTCGCACAGC 59.479 50.000 0.00 0.00 41.67 4.40
568 569 2.584791 CACTTATTTGGCTTGTCGCAC 58.415 47.619 0.00 0.00 41.67 5.34
570 571 2.262572 CCACTTATTTGGCTTGTCGC 57.737 50.000 0.00 0.00 38.13 5.19
579 580 2.554032 GGATCGGATGGCCACTTATTTG 59.446 50.000 8.16 0.00 0.00 2.32
581 582 1.270839 CGGATCGGATGGCCACTTATT 60.271 52.381 8.16 0.00 0.00 1.40
582 583 0.321671 CGGATCGGATGGCCACTTAT 59.678 55.000 8.16 0.00 0.00 1.73
583 584 0.757561 TCGGATCGGATGGCCACTTA 60.758 55.000 8.16 0.00 0.00 2.24
584 585 2.063979 TCGGATCGGATGGCCACTT 61.064 57.895 8.16 0.00 0.00 3.16
585 586 2.443952 TCGGATCGGATGGCCACT 60.444 61.111 8.16 0.00 0.00 4.00
586 587 2.280186 GTCGGATCGGATGGCCAC 60.280 66.667 8.16 1.35 0.00 5.01
587 588 3.911698 CGTCGGATCGGATGGCCA 61.912 66.667 8.56 8.56 0.00 5.36
589 590 4.286320 AGCGTCGGATCGGATGGC 62.286 66.667 20.38 18.30 0.00 4.40
590 591 2.355126 CAGCGTCGGATCGGATGG 60.355 66.667 20.38 10.96 0.00 3.51
591 592 1.658717 GACAGCGTCGGATCGGATG 60.659 63.158 16.10 16.10 0.00 3.51
592 593 2.722487 GACAGCGTCGGATCGGAT 59.278 61.111 6.23 0.00 0.00 4.18
593 594 3.515286 GGACAGCGTCGGATCGGA 61.515 66.667 0.00 0.00 32.65 4.55
594 595 3.822192 TGGACAGCGTCGGATCGG 61.822 66.667 0.00 0.00 32.65 4.18
595 596 2.579787 GTGGACAGCGTCGGATCG 60.580 66.667 0.00 0.00 32.65 3.69
596 597 2.579787 CGTGGACAGCGTCGGATC 60.580 66.667 0.00 0.00 32.65 3.36
611 612 0.753111 GTCCCCTATACACGGTCCGT 60.753 60.000 12.23 12.23 42.36 4.69
612 613 1.789078 CGTCCCCTATACACGGTCCG 61.789 65.000 10.48 10.48 0.00 4.79
613 614 1.458639 CCGTCCCCTATACACGGTCC 61.459 65.000 1.50 0.00 46.58 4.46
617 618 2.363038 TCAAATCCGTCCCCTATACACG 59.637 50.000 0.00 0.00 0.00 4.49
618 619 3.387050 AGTCAAATCCGTCCCCTATACAC 59.613 47.826 0.00 0.00 0.00 2.90
640 641 1.148273 AAGAACAACTGCAGCCGGA 59.852 52.632 15.27 0.00 0.00 5.14
641 642 1.283793 CAAGAACAACTGCAGCCGG 59.716 57.895 15.27 5.93 0.00 6.13
643 644 1.662044 CCCAAGAACAACTGCAGCC 59.338 57.895 15.27 0.00 0.00 4.85
644 645 1.662044 CCCCAAGAACAACTGCAGC 59.338 57.895 15.27 0.00 0.00 5.25
646 647 1.832167 GCCCCCAAGAACAACTGCA 60.832 57.895 0.00 0.00 0.00 4.41
649 650 1.341080 CAATGCCCCCAAGAACAACT 58.659 50.000 0.00 0.00 0.00 3.16
654 658 0.975887 GAAAGCAATGCCCCCAAGAA 59.024 50.000 0.00 0.00 0.00 2.52
693 697 4.487412 GACTACGCCGACACCCCG 62.487 72.222 0.00 0.00 0.00 5.73
694 698 3.061260 GAGACTACGCCGACACCCC 62.061 68.421 0.00 0.00 0.00 4.95
848 852 1.136085 GCAATGAAGTTTGCGTCGCTA 60.136 47.619 19.50 8.24 42.22 4.26
872 876 1.191535 ACTTGTATAGGTGCTGCGGA 58.808 50.000 0.00 0.00 0.00 5.54
879 883 1.065709 ACGGGCCAACTTGTATAGGTG 60.066 52.381 4.39 0.00 41.52 4.00
880 884 1.065709 CACGGGCCAACTTGTATAGGT 60.066 52.381 4.39 0.00 0.00 3.08
911 915 3.991536 GAAGGCGACCGAGTGCTCC 62.992 68.421 0.00 0.00 0.00 4.70
977 983 2.510012 GTTACCGCCCGTACCTGC 60.510 66.667 0.00 0.00 0.00 4.85
978 984 0.738412 CTTGTTACCGCCCGTACCTG 60.738 60.000 0.00 0.00 0.00 4.00
986 1013 3.063743 GCCATGCCTTGTTACCGCC 62.064 63.158 0.00 0.00 0.00 6.13
1123 1150 1.004610 CAATTGGTATGCAGCGACGAG 60.005 52.381 0.00 0.00 0.00 4.18
1135 1162 2.560981 TCGAGCTCAGTGTCAATTGGTA 59.439 45.455 15.40 0.00 0.00 3.25
1147 1174 2.481903 TCGACATGATTCGAGCTCAG 57.518 50.000 15.40 6.88 43.01 3.35
1178 1205 1.063717 AGGACCATCGGATGCCAAATT 60.064 47.619 12.54 0.00 0.00 1.82
1344 1378 3.737047 CGTAGTGGTTGTCTGTTGTCTGT 60.737 47.826 0.00 0.00 0.00 3.41
1345 1379 2.794910 CGTAGTGGTTGTCTGTTGTCTG 59.205 50.000 0.00 0.00 0.00 3.51
1353 1387 1.602377 GCAAAAGCGTAGTGGTTGTCT 59.398 47.619 0.00 0.00 38.56 3.41
1354 1388 1.332375 TGCAAAAGCGTAGTGGTTGTC 59.668 47.619 0.00 0.00 38.56 3.18
1355 1389 1.333619 CTGCAAAAGCGTAGTGGTTGT 59.666 47.619 0.00 0.00 38.56 3.32
1356 1390 1.601903 TCTGCAAAAGCGTAGTGGTTG 59.398 47.619 0.00 0.00 38.56 3.77
1357 1391 1.961793 TCTGCAAAAGCGTAGTGGTT 58.038 45.000 0.00 0.00 40.81 3.67
1358 1392 2.076863 GATCTGCAAAAGCGTAGTGGT 58.923 47.619 0.00 0.00 0.00 4.16
1359 1393 1.061131 CGATCTGCAAAAGCGTAGTGG 59.939 52.381 0.00 0.00 0.00 4.00
1360 1394 1.061131 CCGATCTGCAAAAGCGTAGTG 59.939 52.381 5.79 0.00 0.00 2.74
1361 1395 1.359848 CCGATCTGCAAAAGCGTAGT 58.640 50.000 5.79 0.00 0.00 2.73
1368 1402 0.605319 AGCGAACCCGATCTGCAAAA 60.605 50.000 0.00 0.00 38.22 2.44
1370 1404 1.447838 GAGCGAACCCGATCTGCAA 60.448 57.895 0.00 0.00 46.55 4.08
1381 1415 2.156343 ACACCTTCTTGAGAGCGAAC 57.844 50.000 0.00 0.00 0.00 3.95
1387 1421 1.951602 TCGTCGAACACCTTCTTGAGA 59.048 47.619 0.00 0.00 0.00 3.27
1424 1458 5.184671 GCTTGGAGGTGATGAAAAGATCTTT 59.815 40.000 15.11 15.11 0.00 2.52
1567 1607 0.668096 CGCGTGGTTAGTGCACCTTA 60.668 55.000 14.63 0.00 37.75 2.69
1568 1608 1.959226 CGCGTGGTTAGTGCACCTT 60.959 57.895 14.63 0.00 37.75 3.50
1639 1679 2.098770 ACGAGGTAAAGATCCACGTAGC 59.901 50.000 5.75 0.00 46.53 3.58
1694 1734 1.364269 TACCGGGTGGAAGAAATGGT 58.636 50.000 10.66 0.00 39.21 3.55
1697 1737 3.521937 TCAAGATACCGGGTGGAAGAAAT 59.478 43.478 10.66 0.00 39.21 2.17
2117 2168 2.530958 ATTTGAACGTCCCCGGCGAT 62.531 55.000 9.30 0.00 38.78 4.58
2136 2187 1.153568 GCTCCAGCACGCTGTATGA 60.154 57.895 17.31 7.20 42.15 2.15
2420 2471 4.502962 GCAACTGCTCAGACTAGATTTCT 58.497 43.478 3.60 0.00 38.21 2.52
2426 2477 0.528017 TCCGCAACTGCTCAGACTAG 59.472 55.000 3.60 0.00 39.32 2.57
2435 2486 4.785453 CCCTCCCTCCGCAACTGC 62.785 72.222 0.00 0.00 37.78 4.40
2438 2489 4.785453 CTGCCCTCCCTCCGCAAC 62.785 72.222 0.00 0.00 30.85 4.17
2445 2496 3.950861 TAAGCTGCCTGCCCTCCCT 62.951 63.158 0.00 0.00 44.23 4.20
2446 2497 3.411517 TAAGCTGCCTGCCCTCCC 61.412 66.667 0.00 0.00 44.23 4.30
2447 2498 2.124529 GTAAGCTGCCTGCCCTCC 60.125 66.667 0.00 0.00 44.23 4.30
2449 2500 0.322906 GAAAGTAAGCTGCCTGCCCT 60.323 55.000 0.00 0.00 44.23 5.19
2450 2501 1.648467 CGAAAGTAAGCTGCCTGCCC 61.648 60.000 0.00 0.00 44.23 5.36
2452 2503 1.722011 TACGAAAGTAAGCTGCCTGC 58.278 50.000 0.00 0.00 46.88 4.85
2464 2515 1.536284 GCCTCCTCCGACATACGAAAG 60.536 57.143 0.00 0.00 45.77 2.62
2465 2516 0.458669 GCCTCCTCCGACATACGAAA 59.541 55.000 0.00 0.00 45.77 3.46
2466 2517 0.395311 AGCCTCCTCCGACATACGAA 60.395 55.000 0.00 0.00 45.77 3.85
2467 2518 1.101635 CAGCCTCCTCCGACATACGA 61.102 60.000 0.00 0.00 45.77 3.43
2468 2519 1.360551 CAGCCTCCTCCGACATACG 59.639 63.158 0.00 0.00 42.18 3.06
2470 2521 2.134287 GGCAGCCTCCTCCGACATA 61.134 63.158 3.29 0.00 0.00 2.29
2471 2522 3.474570 GGCAGCCTCCTCCGACAT 61.475 66.667 3.29 0.00 0.00 3.06
2473 2524 3.474570 ATGGCAGCCTCCTCCGAC 61.475 66.667 14.15 0.00 0.00 4.79
2474 2525 3.473647 CATGGCAGCCTCCTCCGA 61.474 66.667 14.15 0.00 0.00 4.55
2475 2526 4.559063 CCATGGCAGCCTCCTCCG 62.559 72.222 14.15 0.00 0.00 4.63
2476 2527 4.891037 GCCATGGCAGCCTCCTCC 62.891 72.222 32.08 0.00 41.49 4.30
2620 2703 8.680001 CAATGACTTTGGATTGACTGATGAATA 58.320 33.333 0.00 0.00 32.24 1.75
2623 2706 6.005823 ACAATGACTTTGGATTGACTGATGA 58.994 36.000 6.09 0.00 39.80 2.92
2627 2710 5.694231 TCACAATGACTTTGGATTGACTG 57.306 39.130 6.09 0.00 39.80 3.51
2651 2734 8.680903 CAATGGACTGTTATATCTGCTTCTTTT 58.319 33.333 0.00 0.00 0.00 2.27
2655 2738 7.280876 TCAACAATGGACTGTTATATCTGCTTC 59.719 37.037 0.00 0.00 37.43 3.86
2666 2749 4.644234 TCAACATGTCAACAATGGACTGTT 59.356 37.500 0.00 0.00 40.17 3.16
2675 2758 5.053811 ACTCGTATGTCAACATGTCAACAA 58.946 37.500 14.92 5.00 37.15 2.83
2678 2761 4.084066 GCAACTCGTATGTCAACATGTCAA 60.084 41.667 0.00 0.00 37.15 3.18
2692 2775 5.986741 TGTTATTCAGAACTTGCAACTCGTA 59.013 36.000 0.00 0.00 0.00 3.43
2696 2780 7.094248 TGCATATGTTATTCAGAACTTGCAACT 60.094 33.333 4.29 0.00 37.41 3.16
2734 2818 7.508977 AGTTCTGACTTAAATTTGGATTTCCCA 59.491 33.333 0.00 0.00 36.40 4.37
2895 2979 1.482593 CCCCTCGTAGTTTCTGCATCT 59.517 52.381 0.00 0.00 0.00 2.90
2909 2993 0.107945 CTTTCTTCAGCTCCCCCTCG 60.108 60.000 0.00 0.00 0.00 4.63
3026 3113 2.275318 GCTTGTTCGGAGGAGATCAAG 58.725 52.381 11.35 11.35 44.53 3.02
3027 3114 1.623311 TGCTTGTTCGGAGGAGATCAA 59.377 47.619 0.00 0.00 0.00 2.57
3054 3141 7.603404 CAGTTTTCTTGCCCAATAATTCATTCA 59.397 33.333 0.00 0.00 0.00 2.57
3292 3379 4.114794 GCTGCTCAAGTGTTTCATGTTTT 58.885 39.130 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.