Multiple sequence alignment - TraesCS1B01G290900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G290900 chr1B 100.000 5377 0 0 1 5377 508540068 508545444 0.000000e+00 9930.0
1 TraesCS1B01G290900 chr1B 91.910 581 45 2 1 580 205740416 205740995 0.000000e+00 811.0
2 TraesCS1B01G290900 chr1B 91.047 592 48 5 3 590 201942863 201943453 0.000000e+00 795.0
3 TraesCS1B01G290900 chr1B 95.455 132 5 1 2756 2886 203424184 203424315 5.460000e-50 209.0
4 TraesCS1B01G290900 chr1D 90.840 1976 94 36 799 2730 379452954 379454886 0.000000e+00 2566.0
5 TraesCS1B01G290900 chr1D 96.655 867 25 4 3518 4380 379455485 379456351 0.000000e+00 1437.0
6 TraesCS1B01G290900 chr1D 92.203 590 25 8 2880 3454 379454903 379455486 0.000000e+00 815.0
7 TraesCS1B01G290900 chr1D 94.256 383 18 2 4379 4761 379456509 379456887 2.790000e-162 582.0
8 TraesCS1B01G290900 chr1D 91.940 335 22 1 5048 5377 379459102 379459436 1.050000e-126 464.0
9 TraesCS1B01G290900 chr1D 94.144 222 7 4 4752 4969 379457299 379457518 3.100000e-87 333.0
10 TraesCS1B01G290900 chr1D 92.063 63 5 0 5001 5063 379457496 379457558 7.420000e-14 89.8
11 TraesCS1B01G290900 chr1A 89.840 1998 107 35 799 2730 480546488 480548455 0.000000e+00 2477.0
12 TraesCS1B01G290900 chr1A 95.672 1109 42 6 3518 4622 480549052 480550158 0.000000e+00 1777.0
13 TraesCS1B01G290900 chr1A 91.032 591 28 12 2880 3454 480548472 480549053 0.000000e+00 774.0
14 TraesCS1B01G290900 chr1A 90.237 379 24 4 5001 5366 480550518 480550896 2.910000e-132 483.0
15 TraesCS1B01G290900 chr1A 91.503 306 10 4 4679 4969 480550236 480550540 1.800000e-109 407.0
16 TraesCS1B01G290900 chr1A 91.080 213 17 2 583 793 480452945 480453157 2.450000e-73 287.0
17 TraesCS1B01G290900 chr4B 92.347 588 41 4 1 586 295923214 295922629 0.000000e+00 833.0
18 TraesCS1B01G290900 chr4B 96.183 131 4 1 2753 2882 413734312 413734182 4.220000e-51 213.0
19 TraesCS1B01G290900 chr4B 93.571 140 7 2 2750 2888 593370320 593370182 1.960000e-49 207.0
20 TraesCS1B01G290900 chr4B 88.043 92 10 1 805 895 458663414 458663505 2.050000e-19 108.0
21 TraesCS1B01G290900 chr3D 91.597 595 44 6 1 592 30778057 30777466 0.000000e+00 817.0
22 TraesCS1B01G290900 chr3D 94.776 134 6 1 2756 2888 67437192 67437059 1.960000e-49 207.0
23 TraesCS1B01G290900 chr3B 91.453 585 43 6 1 583 128501042 128501621 0.000000e+00 797.0
24 TraesCS1B01G290900 chr3B 91.282 585 45 6 1 583 336612544 336611964 0.000000e+00 793.0
25 TraesCS1B01G290900 chr3B 89.474 152 13 3 2741 2890 527232904 527232754 7.110000e-44 189.0
26 TraesCS1B01G290900 chr7B 91.282 585 47 4 1 583 456091148 456091730 0.000000e+00 795.0
27 TraesCS1B01G290900 chr2B 91.267 584 49 2 1 583 352513616 352513034 0.000000e+00 795.0
28 TraesCS1B01G290900 chr2B 91.216 148 8 4 2740 2885 353573612 353573468 4.250000e-46 196.0
29 TraesCS1B01G290900 chr2B 94.231 52 2 1 4622 4673 97569865 97569915 1.610000e-10 78.7
30 TraesCS1B01G290900 chr5B 91.282 585 45 6 1 583 155379688 155379108 0.000000e+00 793.0
31 TraesCS1B01G290900 chr5B 93.431 137 8 1 2747 2882 545806306 545806442 9.130000e-48 202.0
32 TraesCS1B01G290900 chr2A 94.776 134 5 2 2750 2882 46335904 46336036 1.960000e-49 207.0
33 TraesCS1B01G290900 chr2A 95.385 130 5 1 2757 2885 563141785 563141656 7.060000e-49 206.0
34 TraesCS1B01G290900 chr3A 86.250 80 10 1 816 894 508174564 508174485 9.600000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G290900 chr1B 508540068 508545444 5376 False 9930.000000 9930 100.000000 1 5377 1 chr1B.!!$F4 5376
1 TraesCS1B01G290900 chr1B 205740416 205740995 579 False 811.000000 811 91.910000 1 580 1 chr1B.!!$F3 579
2 TraesCS1B01G290900 chr1B 201942863 201943453 590 False 795.000000 795 91.047000 3 590 1 chr1B.!!$F1 587
3 TraesCS1B01G290900 chr1D 379452954 379459436 6482 False 898.114286 2566 93.157286 799 5377 7 chr1D.!!$F1 4578
4 TraesCS1B01G290900 chr1A 480546488 480550896 4408 False 1183.600000 2477 91.656800 799 5366 5 chr1A.!!$F2 4567
5 TraesCS1B01G290900 chr4B 295922629 295923214 585 True 833.000000 833 92.347000 1 586 1 chr4B.!!$R1 585
6 TraesCS1B01G290900 chr3D 30777466 30778057 591 True 817.000000 817 91.597000 1 592 1 chr3D.!!$R1 591
7 TraesCS1B01G290900 chr3B 128501042 128501621 579 False 797.000000 797 91.453000 1 583 1 chr3B.!!$F1 582
8 TraesCS1B01G290900 chr3B 336611964 336612544 580 True 793.000000 793 91.282000 1 583 1 chr3B.!!$R1 582
9 TraesCS1B01G290900 chr7B 456091148 456091730 582 False 795.000000 795 91.282000 1 583 1 chr7B.!!$F1 582
10 TraesCS1B01G290900 chr2B 352513034 352513616 582 True 795.000000 795 91.267000 1 583 1 chr2B.!!$R1 582
11 TraesCS1B01G290900 chr5B 155379108 155379688 580 True 793.000000 793 91.282000 1 583 1 chr5B.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 755 0.035820 TTGGTCGATAGTGTTGGGCC 60.036 55.000 0.00 0.00 37.4 5.80 F
752 757 0.035820 GGTCGATAGTGTTGGGCCAA 60.036 55.000 16.66 16.66 37.4 4.52 F
764 769 0.323908 TGGGCCAATTCCTAAACGGG 60.324 55.000 2.13 0.00 0.0 5.28 F
765 770 0.323999 GGGCCAATTCCTAAACGGGT 60.324 55.000 4.39 0.00 0.0 5.28 F
1723 1774 0.331278 CCAATGGCCCAAGTGTAGGA 59.669 55.000 0.00 0.00 0.0 2.94 F
2771 2862 1.075050 ACTTGTACTCCCTCCGTCTGA 59.925 52.381 0.00 0.00 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2415 2494 0.109597 CAAACGTGGAAGCAGATGGC 60.110 55.000 0.00 0.0 45.30 4.40 R
2594 2685 0.753867 TCTGGCACGTTCCAACAGTA 59.246 50.000 8.63 0.0 35.36 2.74 R
2759 2850 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.0 0.00 4.20 R
2760 2851 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.0 0.00 4.30 R
3165 3272 1.468054 GCCGCCAAACTGAAATAGCTG 60.468 52.381 0.00 0.0 0.00 4.24 R
4470 4741 0.028505 CGAGCTTCGCCCATGAAATG 59.971 55.000 0.00 0.0 37.25 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.599866 TGTAAGTAGTTCATGATCACTTATTGG 57.400 33.333 19.20 0.00 35.01 3.16
153 156 4.170647 ACCACTTATCCATTCCATTCCCAT 59.829 41.667 0.00 0.00 0.00 4.00
204 207 4.384647 GGTAATGGGATTGCTGAGTTCTCT 60.385 45.833 1.53 0.00 0.00 3.10
247 250 3.121738 ACAGTTGCAGGTACAGGTAAC 57.878 47.619 8.30 8.30 32.70 2.50
272 276 2.561569 TGATCTGACGTGAGAGCGATA 58.438 47.619 15.35 0.00 30.60 2.92
373 377 5.014123 AGGGTGGATGTCATTTGAGTTTCTA 59.986 40.000 0.00 0.00 0.00 2.10
406 410 1.674221 GCATAGTCGGATGATGCCCTC 60.674 57.143 13.28 0.00 40.08 4.30
409 413 2.015456 AGTCGGATGATGCCCTCATA 57.985 50.000 0.00 0.00 44.83 2.15
412 416 3.449018 AGTCGGATGATGCCCTCATATAC 59.551 47.826 0.00 0.05 44.83 1.47
431 435 8.495148 TCATATACGATGTTGTTGTATTCATGC 58.505 33.333 0.00 0.00 38.22 4.06
443 447 3.882288 TGTATTCATGCGGCATTGTATGT 59.118 39.130 13.81 0.00 34.13 2.29
458 462 8.620416 GGCATTGTATGTCTTTTGTATGTATCA 58.380 33.333 0.00 0.00 30.66 2.15
534 539 3.578282 TCAATATGCGGCTCTATCCTTGA 59.422 43.478 0.00 0.00 0.00 3.02
550 555 3.578716 TCCTTGATGAGACCTTCGAGTTT 59.421 43.478 0.00 0.00 0.00 2.66
583 588 2.708216 TCGCATATTGGGTGTGACAT 57.292 45.000 0.00 0.00 31.67 3.06
587 592 4.104776 CGCATATTGGGTGTGACATTTTC 58.895 43.478 0.00 0.00 0.00 2.29
588 593 4.142403 CGCATATTGGGTGTGACATTTTCT 60.142 41.667 0.00 0.00 0.00 2.52
590 595 5.807011 GCATATTGGGTGTGACATTTTCTTC 59.193 40.000 0.00 0.00 0.00 2.87
591 596 6.572119 GCATATTGGGTGTGACATTTTCTTCA 60.572 38.462 0.00 0.00 0.00 3.02
592 597 7.549839 CATATTGGGTGTGACATTTTCTTCAT 58.450 34.615 0.00 0.00 0.00 2.57
593 598 8.685427 CATATTGGGTGTGACATTTTCTTCATA 58.315 33.333 0.00 0.00 0.00 2.15
594 599 6.968263 TTGGGTGTGACATTTTCTTCATAA 57.032 33.333 0.00 0.00 0.00 1.90
595 600 6.968263 TGGGTGTGACATTTTCTTCATAAA 57.032 33.333 0.00 0.00 0.00 1.40
596 601 7.353414 TGGGTGTGACATTTTCTTCATAAAA 57.647 32.000 0.00 0.00 33.15 1.52
597 602 7.432869 TGGGTGTGACATTTTCTTCATAAAAG 58.567 34.615 0.00 0.00 32.20 2.27
598 603 6.366061 GGGTGTGACATTTTCTTCATAAAAGC 59.634 38.462 0.00 0.00 32.20 3.51
599 604 6.922957 GGTGTGACATTTTCTTCATAAAAGCA 59.077 34.615 0.00 0.00 32.20 3.91
600 605 7.599998 GGTGTGACATTTTCTTCATAAAAGCAT 59.400 33.333 0.00 0.00 32.20 3.79
601 606 9.624697 GTGTGACATTTTCTTCATAAAAGCATA 57.375 29.630 0.00 0.00 32.20 3.14
612 617 9.905713 TCTTCATAAAAGCATATGTACCTTTCT 57.094 29.630 4.29 1.06 35.29 2.52
623 628 9.274065 GCATATGTACCTTTCTTTTTAAGTTCG 57.726 33.333 4.29 0.00 0.00 3.95
624 629 9.274065 CATATGTACCTTTCTTTTTAAGTTCGC 57.726 33.333 0.00 0.00 0.00 4.70
625 630 6.063640 TGTACCTTTCTTTTTAAGTTCGCC 57.936 37.500 0.00 0.00 0.00 5.54
626 631 5.824097 TGTACCTTTCTTTTTAAGTTCGCCT 59.176 36.000 0.00 0.00 0.00 5.52
627 632 5.434352 ACCTTTCTTTTTAAGTTCGCCTC 57.566 39.130 0.00 0.00 0.00 4.70
628 633 4.885325 ACCTTTCTTTTTAAGTTCGCCTCA 59.115 37.500 0.00 0.00 0.00 3.86
629 634 5.535030 ACCTTTCTTTTTAAGTTCGCCTCAT 59.465 36.000 0.00 0.00 0.00 2.90
630 635 6.040504 ACCTTTCTTTTTAAGTTCGCCTCATT 59.959 34.615 0.00 0.00 0.00 2.57
631 636 6.582672 CCTTTCTTTTTAAGTTCGCCTCATTC 59.417 38.462 0.00 0.00 0.00 2.67
632 637 6.627395 TTCTTTTTAAGTTCGCCTCATTCA 57.373 33.333 0.00 0.00 0.00 2.57
633 638 6.817765 TCTTTTTAAGTTCGCCTCATTCAT 57.182 33.333 0.00 0.00 0.00 2.57
634 639 7.214467 TCTTTTTAAGTTCGCCTCATTCATT 57.786 32.000 0.00 0.00 0.00 2.57
635 640 7.657336 TCTTTTTAAGTTCGCCTCATTCATTT 58.343 30.769 0.00 0.00 0.00 2.32
636 641 8.141268 TCTTTTTAAGTTCGCCTCATTCATTTT 58.859 29.630 0.00 0.00 0.00 1.82
637 642 9.405587 CTTTTTAAGTTCGCCTCATTCATTTTA 57.594 29.630 0.00 0.00 0.00 1.52
638 643 9.921637 TTTTTAAGTTCGCCTCATTCATTTTAT 57.078 25.926 0.00 0.00 0.00 1.40
639 644 9.921637 TTTTAAGTTCGCCTCATTCATTTTATT 57.078 25.926 0.00 0.00 0.00 1.40
640 645 9.921637 TTTAAGTTCGCCTCATTCATTTTATTT 57.078 25.926 0.00 0.00 0.00 1.40
641 646 9.921637 TTAAGTTCGCCTCATTCATTTTATTTT 57.078 25.926 0.00 0.00 0.00 1.82
642 647 7.816945 AGTTCGCCTCATTCATTTTATTTTG 57.183 32.000 0.00 0.00 0.00 2.44
643 648 6.813152 AGTTCGCCTCATTCATTTTATTTTGG 59.187 34.615 0.00 0.00 0.00 3.28
644 649 6.522625 TCGCCTCATTCATTTTATTTTGGA 57.477 33.333 0.00 0.00 0.00 3.53
645 650 6.563422 TCGCCTCATTCATTTTATTTTGGAG 58.437 36.000 0.00 0.00 0.00 3.86
646 651 5.232838 CGCCTCATTCATTTTATTTTGGAGC 59.767 40.000 0.00 0.00 0.00 4.70
647 652 6.343703 GCCTCATTCATTTTATTTTGGAGCT 58.656 36.000 0.00 0.00 0.00 4.09
648 653 6.257193 GCCTCATTCATTTTATTTTGGAGCTG 59.743 38.462 0.00 0.00 0.00 4.24
649 654 7.549839 CCTCATTCATTTTATTTTGGAGCTGA 58.450 34.615 0.00 0.00 0.00 4.26
650 655 7.490402 CCTCATTCATTTTATTTTGGAGCTGAC 59.510 37.037 0.00 0.00 0.00 3.51
651 656 7.894708 TCATTCATTTTATTTTGGAGCTGACA 58.105 30.769 0.00 0.00 0.00 3.58
652 657 8.366401 TCATTCATTTTATTTTGGAGCTGACAA 58.634 29.630 0.00 0.00 0.00 3.18
653 658 8.653338 CATTCATTTTATTTTGGAGCTGACAAG 58.347 33.333 0.00 0.00 0.00 3.16
654 659 7.523293 TCATTTTATTTTGGAGCTGACAAGA 57.477 32.000 0.00 0.00 0.00 3.02
655 660 7.950512 TCATTTTATTTTGGAGCTGACAAGAA 58.049 30.769 0.00 0.00 0.00 2.52
656 661 7.867403 TCATTTTATTTTGGAGCTGACAAGAAC 59.133 33.333 0.00 0.00 0.00 3.01
657 662 6.707440 TTTATTTTGGAGCTGACAAGAACA 57.293 33.333 0.00 0.00 0.00 3.18
658 663 6.899393 TTATTTTGGAGCTGACAAGAACAT 57.101 33.333 0.00 0.00 0.00 2.71
659 664 7.994425 TTATTTTGGAGCTGACAAGAACATA 57.006 32.000 0.00 0.00 0.00 2.29
660 665 5.689383 TTTTGGAGCTGACAAGAACATAC 57.311 39.130 0.00 0.00 0.00 2.39
661 666 4.350368 TTGGAGCTGACAAGAACATACA 57.650 40.909 0.00 0.00 0.00 2.29
662 667 3.664107 TGGAGCTGACAAGAACATACAC 58.336 45.455 0.00 0.00 0.00 2.90
663 668 3.070878 TGGAGCTGACAAGAACATACACA 59.929 43.478 0.00 0.00 0.00 3.72
664 669 3.433615 GGAGCTGACAAGAACATACACAC 59.566 47.826 0.00 0.00 0.00 3.82
665 670 4.310769 GAGCTGACAAGAACATACACACT 58.689 43.478 0.00 0.00 0.00 3.55
666 671 4.708177 AGCTGACAAGAACATACACACTT 58.292 39.130 0.00 0.00 0.00 3.16
667 672 4.752101 AGCTGACAAGAACATACACACTTC 59.248 41.667 0.00 0.00 0.00 3.01
668 673 4.752101 GCTGACAAGAACATACACACTTCT 59.248 41.667 0.00 0.00 0.00 2.85
669 674 5.237344 GCTGACAAGAACATACACACTTCTT 59.763 40.000 0.00 0.00 35.12 2.52
670 675 6.564873 GCTGACAAGAACATACACACTTCTTC 60.565 42.308 0.00 0.00 32.96 2.87
671 676 6.582636 TGACAAGAACATACACACTTCTTCT 58.417 36.000 0.00 0.00 32.96 2.85
672 677 6.479990 TGACAAGAACATACACACTTCTTCTG 59.520 38.462 0.00 0.00 32.96 3.02
673 678 6.582636 ACAAGAACATACACACTTCTTCTGA 58.417 36.000 0.00 0.00 32.96 3.27
674 679 7.047891 ACAAGAACATACACACTTCTTCTGAA 58.952 34.615 0.00 0.00 32.96 3.02
675 680 7.552687 ACAAGAACATACACACTTCTTCTGAAA 59.447 33.333 0.00 0.00 32.96 2.69
676 681 8.397906 CAAGAACATACACACTTCTTCTGAAAA 58.602 33.333 0.00 0.00 32.96 2.29
677 682 8.506168 AGAACATACACACTTCTTCTGAAAAA 57.494 30.769 0.00 0.00 0.00 1.94
718 723 5.793026 TCCAAAAGAAAAACACATTGTGC 57.207 34.783 16.62 0.15 36.98 4.57
719 724 5.240891 TCCAAAAGAAAAACACATTGTGCA 58.759 33.333 16.62 0.00 36.98 4.57
720 725 5.879223 TCCAAAAGAAAAACACATTGTGCAT 59.121 32.000 16.62 3.35 36.98 3.96
721 726 5.966503 CCAAAAGAAAAACACATTGTGCATG 59.033 36.000 16.62 0.00 36.98 4.06
723 728 6.740411 AAAGAAAAACACATTGTGCATGTT 57.260 29.167 16.62 7.42 44.40 2.71
724 729 5.971895 AGAAAAACACATTGTGCATGTTC 57.028 34.783 16.62 15.08 44.40 3.18
725 730 4.503734 AGAAAAACACATTGTGCATGTTCG 59.496 37.500 16.62 0.00 44.40 3.95
726 731 3.706802 AAACACATTGTGCATGTTCGA 57.293 38.095 16.62 0.00 44.40 3.71
727 732 3.921119 AACACATTGTGCATGTTCGAT 57.079 38.095 16.62 0.00 44.40 3.59
728 733 3.206034 ACACATTGTGCATGTTCGATG 57.794 42.857 16.62 13.90 44.40 3.84
729 734 2.095110 ACACATTGTGCATGTTCGATGG 60.095 45.455 16.62 11.67 44.40 3.51
730 735 1.473677 ACATTGTGCATGTTCGATGGG 59.526 47.619 17.42 2.17 44.40 4.00
731 736 1.473677 CATTGTGCATGTTCGATGGGT 59.526 47.619 0.00 0.00 0.00 4.51
732 737 1.614996 TTGTGCATGTTCGATGGGTT 58.385 45.000 0.00 0.00 0.00 4.11
733 738 0.880441 TGTGCATGTTCGATGGGTTG 59.120 50.000 0.00 0.00 0.00 3.77
734 739 0.171007 GTGCATGTTCGATGGGTTGG 59.829 55.000 0.00 0.00 0.00 3.77
735 740 0.251121 TGCATGTTCGATGGGTTGGT 60.251 50.000 0.00 0.00 0.00 3.67
736 741 0.451783 GCATGTTCGATGGGTTGGTC 59.548 55.000 0.00 0.00 0.00 4.02
737 742 0.726827 CATGTTCGATGGGTTGGTCG 59.273 55.000 0.00 0.00 39.11 4.79
738 743 0.611200 ATGTTCGATGGGTTGGTCGA 59.389 50.000 0.00 0.00 44.25 4.20
739 744 0.611200 TGTTCGATGGGTTGGTCGAT 59.389 50.000 0.00 0.00 45.13 3.59
740 745 1.826096 TGTTCGATGGGTTGGTCGATA 59.174 47.619 0.00 0.00 45.13 2.92
741 746 2.159156 TGTTCGATGGGTTGGTCGATAG 60.159 50.000 0.00 0.00 45.13 2.08
742 747 1.771565 TCGATGGGTTGGTCGATAGT 58.228 50.000 0.00 0.00 41.44 2.12
743 748 1.407618 TCGATGGGTTGGTCGATAGTG 59.592 52.381 0.00 0.00 41.44 2.74
744 749 1.136305 CGATGGGTTGGTCGATAGTGT 59.864 52.381 0.00 0.00 40.11 3.55
745 750 2.418197 CGATGGGTTGGTCGATAGTGTT 60.418 50.000 0.00 0.00 40.11 3.32
746 751 2.465860 TGGGTTGGTCGATAGTGTTG 57.534 50.000 0.00 0.00 37.40 3.33
747 752 1.002659 TGGGTTGGTCGATAGTGTTGG 59.997 52.381 0.00 0.00 37.40 3.77
748 753 1.677820 GGGTTGGTCGATAGTGTTGGG 60.678 57.143 0.00 0.00 37.40 4.12
749 754 1.084289 GTTGGTCGATAGTGTTGGGC 58.916 55.000 0.00 0.00 37.40 5.36
750 755 0.035820 TTGGTCGATAGTGTTGGGCC 60.036 55.000 0.00 0.00 37.40 5.80
751 756 1.195442 TGGTCGATAGTGTTGGGCCA 61.195 55.000 0.00 0.00 37.40 5.36
752 757 0.035820 GGTCGATAGTGTTGGGCCAA 60.036 55.000 16.66 16.66 37.40 4.52
753 758 1.408266 GGTCGATAGTGTTGGGCCAAT 60.408 52.381 23.95 9.35 37.40 3.16
754 759 2.365582 GTCGATAGTGTTGGGCCAATT 58.634 47.619 23.95 13.60 37.40 2.32
755 760 2.354821 GTCGATAGTGTTGGGCCAATTC 59.645 50.000 23.95 17.63 37.40 2.17
756 761 1.676006 CGATAGTGTTGGGCCAATTCC 59.324 52.381 23.95 13.02 0.00 3.01
757 762 2.683742 CGATAGTGTTGGGCCAATTCCT 60.684 50.000 23.95 19.21 0.00 3.36
758 763 3.433031 CGATAGTGTTGGGCCAATTCCTA 60.433 47.826 23.95 20.62 0.00 2.94
759 764 2.990740 AGTGTTGGGCCAATTCCTAA 57.009 45.000 23.95 0.00 0.00 2.69
760 765 3.252554 AGTGTTGGGCCAATTCCTAAA 57.747 42.857 23.95 0.00 0.00 1.85
761 766 2.897326 AGTGTTGGGCCAATTCCTAAAC 59.103 45.455 23.95 8.08 0.00 2.01
762 767 1.889829 TGTTGGGCCAATTCCTAAACG 59.110 47.619 23.95 0.00 0.00 3.60
763 768 1.203758 GTTGGGCCAATTCCTAAACGG 59.796 52.381 23.95 0.00 0.00 4.44
764 769 0.323908 TGGGCCAATTCCTAAACGGG 60.324 55.000 2.13 0.00 0.00 5.28
765 770 0.323999 GGGCCAATTCCTAAACGGGT 60.324 55.000 4.39 0.00 0.00 5.28
766 771 1.552578 GGCCAATTCCTAAACGGGTT 58.447 50.000 0.00 0.00 0.00 4.11
767 772 1.897133 GGCCAATTCCTAAACGGGTTT 59.103 47.619 0.00 2.05 36.63 3.27
768 773 3.090790 GGCCAATTCCTAAACGGGTTTA 58.909 45.455 0.00 4.16 34.23 2.01
769 774 3.702548 GGCCAATTCCTAAACGGGTTTAT 59.297 43.478 0.00 0.00 34.86 1.40
770 775 4.202080 GGCCAATTCCTAAACGGGTTTATC 60.202 45.833 0.00 0.00 34.86 1.75
771 776 4.399934 GCCAATTCCTAAACGGGTTTATCA 59.600 41.667 4.61 0.00 34.86 2.15
772 777 5.677852 GCCAATTCCTAAACGGGTTTATCAC 60.678 44.000 4.61 0.00 34.86 3.06
782 787 2.889852 GGGTTTATCACGAGTGAGACC 58.110 52.381 19.27 19.27 43.61 3.85
783 788 2.232941 GGGTTTATCACGAGTGAGACCA 59.767 50.000 24.32 6.67 43.61 4.02
784 789 3.251571 GGTTTATCACGAGTGAGACCAC 58.748 50.000 21.07 12.74 43.61 4.16
794 799 2.150397 GTGAGACCACTACACCACAC 57.850 55.000 0.00 0.00 40.10 3.82
795 800 1.411246 GTGAGACCACTACACCACACA 59.589 52.381 0.00 0.00 40.10 3.72
796 801 1.411246 TGAGACCACTACACCACACAC 59.589 52.381 0.00 0.00 0.00 3.82
797 802 0.756903 AGACCACTACACCACACACC 59.243 55.000 0.00 0.00 0.00 4.16
806 811 2.124362 CCACACACCAGCCACACA 60.124 61.111 0.00 0.00 0.00 3.72
837 842 1.683917 TGTTTGATTTCAACCCCACGG 59.316 47.619 0.00 0.00 35.28 4.94
928 935 2.619646 GCCACACGAGGGTTTCTAAAAA 59.380 45.455 0.00 0.00 0.00 1.94
1032 1051 1.924731 CAGAGTTTTCCCCTTTCCCC 58.075 55.000 0.00 0.00 0.00 4.81
1033 1052 0.784495 AGAGTTTTCCCCTTTCCCCC 59.216 55.000 0.00 0.00 0.00 5.40
1080 1107 1.202698 CCTCGATCCAAATCCCCACTC 60.203 57.143 0.00 0.00 0.00 3.51
1248 1275 2.386661 ATCGTTTCCTGCATCTCGTT 57.613 45.000 0.00 0.00 0.00 3.85
1280 1307 1.008538 CGTTGTTGTTGAGCTGGGC 60.009 57.895 0.00 0.00 0.00 5.36
1659 1689 2.813754 CAGGTTAATGGGTGCGGATATG 59.186 50.000 0.00 0.00 0.00 1.78
1679 1726 8.048514 GGATATGTTTTGGTTTAGTGGGTACTA 58.951 37.037 0.00 0.00 38.36 1.82
1690 1737 7.015389 GGTTTAGTGGGTACTAGCTTATGAGAT 59.985 40.741 0.00 0.00 40.33 2.75
1723 1774 0.331278 CCAATGGCCCAAGTGTAGGA 59.669 55.000 0.00 0.00 0.00 2.94
1774 1833 5.888161 TGAGTATAGCTGTGATGTCTCTTGA 59.112 40.000 0.00 0.00 0.00 3.02
1801 1860 6.039605 TGAGAAATCTTGAACAAAGCACATGA 59.960 34.615 0.00 0.00 35.69 3.07
1915 1984 5.645497 AGAGCTTATAGCAACTTCTGTTTGG 59.355 40.000 1.09 0.00 45.56 3.28
1923 1992 3.364366 GCAACTTCTGTTTGGATGAGTCG 60.364 47.826 0.00 0.00 33.52 4.18
1942 2011 6.703165 TGAGTCGTAGAGATTGCGTACTATAA 59.297 38.462 0.00 0.00 36.95 0.98
1952 2021 9.245962 GAGATTGCGTACTATAACTGTTGTATT 57.754 33.333 2.69 0.00 0.00 1.89
2003 2072 5.439721 TCATGACTGCTATTGTTTGCCTAT 58.560 37.500 0.00 0.00 0.00 2.57
2026 2095 3.489229 GGCGCACCATTTTTAGATCTTCC 60.489 47.826 10.83 0.00 35.26 3.46
2083 2153 2.945008 CAGTCCAAAGAAAGCACTGTCA 59.055 45.455 0.00 0.00 31.59 3.58
2107 2177 6.654793 TGCATTTGTTCTTTGTTTGTTACC 57.345 33.333 0.00 0.00 0.00 2.85
2210 2288 3.921119 TTGCATCTGTTGTTCCATGTC 57.079 42.857 0.00 0.00 0.00 3.06
2217 2295 3.751175 TCTGTTGTTCCATGTCGAAATCC 59.249 43.478 0.00 0.00 0.00 3.01
2360 2439 9.347240 CTTATCAGTTCAGTTTATCCAATGGAT 57.653 33.333 19.73 19.73 45.40 3.41
2404 2483 5.419542 TGCTAATCCTGACATGTAAGTGTC 58.580 41.667 9.47 0.30 46.75 3.67
2415 2494 4.456911 ACATGTAAGTGTCTTGCCAATCTG 59.543 41.667 0.00 0.00 0.00 2.90
2417 2496 1.251251 AAGTGTCTTGCCAATCTGCC 58.749 50.000 0.00 0.00 0.00 4.85
2419 2498 1.180029 GTGTCTTGCCAATCTGCCAT 58.820 50.000 0.00 0.00 0.00 4.40
2429 2508 1.404391 CAATCTGCCATCTGCTTCCAC 59.596 52.381 0.00 0.00 42.00 4.02
2447 2526 6.507929 GCTTCCACGTTTGAAATTTTTGAGTC 60.508 38.462 0.00 0.00 0.00 3.36
2448 2527 5.955488 TCCACGTTTGAAATTTTTGAGTCA 58.045 33.333 0.00 0.00 0.00 3.41
2449 2528 6.033341 TCCACGTTTGAAATTTTTGAGTCAG 58.967 36.000 0.00 0.00 0.00 3.51
2450 2529 5.804979 CCACGTTTGAAATTTTTGAGTCAGT 59.195 36.000 0.00 0.00 0.00 3.41
2451 2530 6.310224 CCACGTTTGAAATTTTTGAGTCAGTT 59.690 34.615 0.00 0.00 0.00 3.16
2452 2531 7.148656 CCACGTTTGAAATTTTTGAGTCAGTTT 60.149 33.333 0.00 0.00 0.00 2.66
2453 2532 7.683676 CACGTTTGAAATTTTTGAGTCAGTTTG 59.316 33.333 0.00 0.00 0.00 2.93
2454 2533 7.383843 ACGTTTGAAATTTTTGAGTCAGTTTGT 59.616 29.630 0.00 0.00 0.00 2.83
2455 2534 7.683676 CGTTTGAAATTTTTGAGTCAGTTTGTG 59.316 33.333 0.00 0.00 0.00 3.33
2456 2535 7.593875 TTGAAATTTTTGAGTCAGTTTGTGG 57.406 32.000 0.00 0.00 0.00 4.17
2457 2536 6.696411 TGAAATTTTTGAGTCAGTTTGTGGT 58.304 32.000 0.00 0.00 0.00 4.16
2490 2581 8.995027 TTTGAGGCAAATGGTCAAGTATATAT 57.005 30.769 0.00 0.00 32.00 0.86
2495 2586 7.880195 AGGCAAATGGTCAAGTATATATCTCAC 59.120 37.037 0.00 0.00 0.00 3.51
2515 2606 3.937706 CACAACAAGGGCAATTCACAAAA 59.062 39.130 0.00 0.00 0.00 2.44
2516 2607 4.034279 CACAACAAGGGCAATTCACAAAAG 59.966 41.667 0.00 0.00 0.00 2.27
2517 2608 4.081198 ACAACAAGGGCAATTCACAAAAGA 60.081 37.500 0.00 0.00 0.00 2.52
2518 2609 4.961438 ACAAGGGCAATTCACAAAAGAT 57.039 36.364 0.00 0.00 0.00 2.40
2519 2610 4.634199 ACAAGGGCAATTCACAAAAGATG 58.366 39.130 0.00 0.00 0.00 2.90
2520 2611 4.344679 ACAAGGGCAATTCACAAAAGATGA 59.655 37.500 0.00 0.00 0.00 2.92
2521 2612 4.525912 AGGGCAATTCACAAAAGATGAC 57.474 40.909 0.00 0.00 0.00 3.06
2522 2613 4.154942 AGGGCAATTCACAAAAGATGACT 58.845 39.130 0.00 0.00 0.00 3.41
2523 2614 5.324409 AGGGCAATTCACAAAAGATGACTA 58.676 37.500 0.00 0.00 0.00 2.59
2524 2615 5.183904 AGGGCAATTCACAAAAGATGACTAC 59.816 40.000 0.00 0.00 0.00 2.73
2525 2616 5.048083 GGGCAATTCACAAAAGATGACTACA 60.048 40.000 0.00 0.00 0.00 2.74
2526 2617 5.858581 GGCAATTCACAAAAGATGACTACAC 59.141 40.000 0.00 0.00 0.00 2.90
2527 2618 6.294176 GGCAATTCACAAAAGATGACTACACT 60.294 38.462 0.00 0.00 0.00 3.55
2528 2619 7.094805 GGCAATTCACAAAAGATGACTACACTA 60.095 37.037 0.00 0.00 0.00 2.74
2529 2620 8.454106 GCAATTCACAAAAGATGACTACACTAT 58.546 33.333 0.00 0.00 0.00 2.12
2533 2624 8.902540 TCACAAAAGATGACTACACTATTTGT 57.097 30.769 0.00 0.00 42.84 2.83
2534 2625 9.337396 TCACAAAAGATGACTACACTATTTGTT 57.663 29.630 0.00 0.00 39.91 2.83
2543 2634 8.234887 TGACTACACTATTTGTTAACATGTCG 57.765 34.615 13.57 10.81 39.91 4.35
2561 2652 7.492524 ACATGTCGAGTGATATCATAAGTTGT 58.507 34.615 9.02 5.04 0.00 3.32
2567 2658 6.086896 CGAGTGATATCATAAGTTGTAGCACG 59.913 42.308 9.02 0.00 35.39 5.34
2572 2663 3.595173 TCATAAGTTGTAGCACGTGCAT 58.405 40.909 39.21 26.28 45.16 3.96
2594 2685 7.902387 CATATGCTGCAGTATTATTGAGAGT 57.098 36.000 22.76 0.00 0.00 3.24
2606 2697 7.974501 AGTATTATTGAGAGTACTGTTGGAACG 59.025 37.037 0.00 0.00 0.00 3.95
2622 2713 2.550606 GGAACGTGCCAGAATTGTGTAA 59.449 45.455 8.05 0.00 0.00 2.41
2646 2737 6.405278 TGAAGCAATACTAGCACTAGCATA 57.595 37.500 4.58 0.00 45.49 3.14
2647 2738 6.450545 TGAAGCAATACTAGCACTAGCATAG 58.549 40.000 4.58 0.00 46.50 2.23
2663 2754 3.054875 AGCATAGTGTCAGCAGATGGAAA 60.055 43.478 0.00 0.00 0.00 3.13
2668 2759 7.415541 GCATAGTGTCAGCAGATGGAAATTTTA 60.416 37.037 0.00 0.00 0.00 1.52
2669 2760 6.899393 AGTGTCAGCAGATGGAAATTTTAA 57.101 33.333 0.00 0.00 0.00 1.52
2670 2761 7.472334 AGTGTCAGCAGATGGAAATTTTAAT 57.528 32.000 0.00 0.00 0.00 1.40
2682 2773 7.142995 TGGAAATTTTAATTTGGGGAAGTGT 57.857 32.000 5.24 0.00 38.64 3.55
2697 2788 9.983024 TTGGGGAAGTGTGATAATTTAATAGAA 57.017 29.630 0.00 0.00 0.00 2.10
2735 2826 6.032956 CCAAGTATGGTGTAACAGTACTCA 57.967 41.667 0.00 0.00 42.18 3.41
2736 2827 6.100004 CCAAGTATGGTGTAACAGTACTCAG 58.900 44.000 0.00 0.00 42.18 3.35
2737 2828 6.071560 CCAAGTATGGTGTAACAGTACTCAGA 60.072 42.308 0.00 0.00 42.18 3.27
2738 2829 7.363880 CCAAGTATGGTGTAACAGTACTCAGAT 60.364 40.741 0.00 0.00 42.18 2.90
2765 2856 4.612264 TGTTGTAACTTGTACTCCCTCC 57.388 45.455 0.00 0.00 0.00 4.30
2766 2857 3.006110 TGTTGTAACTTGTACTCCCTCCG 59.994 47.826 0.00 0.00 0.00 4.63
2767 2858 2.880443 TGTAACTTGTACTCCCTCCGT 58.120 47.619 0.00 0.00 0.00 4.69
2768 2859 2.821969 TGTAACTTGTACTCCCTCCGTC 59.178 50.000 0.00 0.00 0.00 4.79
2769 2860 2.305858 AACTTGTACTCCCTCCGTCT 57.694 50.000 0.00 0.00 0.00 4.18
2770 2861 1.546961 ACTTGTACTCCCTCCGTCTG 58.453 55.000 0.00 0.00 0.00 3.51
2771 2862 1.075050 ACTTGTACTCCCTCCGTCTGA 59.925 52.381 0.00 0.00 0.00 3.27
2772 2863 2.168496 CTTGTACTCCCTCCGTCTGAA 58.832 52.381 0.00 0.00 0.00 3.02
2773 2864 2.297698 TGTACTCCCTCCGTCTGAAA 57.702 50.000 0.00 0.00 0.00 2.69
2774 2865 2.600790 TGTACTCCCTCCGTCTGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
2775 2866 3.170717 TGTACTCCCTCCGTCTGAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
2776 2867 4.346730 TGTACTCCCTCCGTCTGAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2777 2868 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2778 2869 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2779 2870 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2780 2871 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2781 2872 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2782 2873 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2783 2874 4.562757 CCCTCCGTCTGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
2784 2875 5.178797 CCTCCGTCTGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
2785 2876 5.292101 CCTCCGTCTGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
2786 2877 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
2787 2878 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
2788 2879 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
2789 2880 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
2790 2881 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
2791 2882 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
2792 2883 9.897744 GTCTGAAAATACTTGTCATCAAAATGA 57.102 29.630 0.00 0.00 39.63 2.57
2838 2929 9.623350 GAACTAAAATACATCTAGATACGTCCC 57.377 37.037 4.54 0.00 0.00 4.46
2839 2930 8.120140 ACTAAAATACATCTAGATACGTCCCC 57.880 38.462 4.54 0.00 0.00 4.81
2840 2931 7.949006 ACTAAAATACATCTAGATACGTCCCCT 59.051 37.037 4.54 0.00 0.00 4.79
2841 2932 7.613551 AAAATACATCTAGATACGTCCCCTT 57.386 36.000 4.54 0.00 0.00 3.95
2842 2933 7.613551 AAATACATCTAGATACGTCCCCTTT 57.386 36.000 4.54 0.00 0.00 3.11
2843 2934 8.716674 AAATACATCTAGATACGTCCCCTTTA 57.283 34.615 4.54 0.00 0.00 1.85
2844 2935 8.896722 AATACATCTAGATACGTCCCCTTTAT 57.103 34.615 4.54 0.00 0.00 1.40
2845 2936 6.837471 ACATCTAGATACGTCCCCTTTATC 57.163 41.667 4.54 0.00 0.00 1.75
2846 2937 5.715753 ACATCTAGATACGTCCCCTTTATCC 59.284 44.000 4.54 0.00 0.00 2.59
2847 2938 5.329191 TCTAGATACGTCCCCTTTATCCA 57.671 43.478 0.00 0.00 0.00 3.41
2848 2939 5.900437 TCTAGATACGTCCCCTTTATCCAT 58.100 41.667 0.00 0.00 0.00 3.41
2849 2940 6.320518 TCTAGATACGTCCCCTTTATCCATT 58.679 40.000 0.00 0.00 0.00 3.16
2850 2941 5.906772 AGATACGTCCCCTTTATCCATTT 57.093 39.130 0.00 0.00 0.00 2.32
2851 2942 6.262056 AGATACGTCCCCTTTATCCATTTT 57.738 37.500 0.00 0.00 0.00 1.82
2852 2943 6.062095 AGATACGTCCCCTTTATCCATTTTG 58.938 40.000 0.00 0.00 0.00 2.44
2853 2944 4.310022 ACGTCCCCTTTATCCATTTTGA 57.690 40.909 0.00 0.00 0.00 2.69
2854 2945 4.867086 ACGTCCCCTTTATCCATTTTGAT 58.133 39.130 0.00 0.00 0.00 2.57
2855 2946 4.644685 ACGTCCCCTTTATCCATTTTGATG 59.355 41.667 0.00 0.00 0.00 3.07
2856 2947 4.887071 CGTCCCCTTTATCCATTTTGATGA 59.113 41.667 0.00 0.00 0.00 2.92
2857 2948 5.221048 CGTCCCCTTTATCCATTTTGATGAC 60.221 44.000 0.00 0.00 0.00 3.06
2858 2949 5.656416 GTCCCCTTTATCCATTTTGATGACA 59.344 40.000 0.00 0.00 0.00 3.58
2859 2950 6.154363 GTCCCCTTTATCCATTTTGATGACAA 59.846 38.462 0.00 0.00 0.00 3.18
2860 2951 6.380846 TCCCCTTTATCCATTTTGATGACAAG 59.619 38.462 0.00 0.00 37.32 3.16
2861 2952 6.155049 CCCCTTTATCCATTTTGATGACAAGT 59.845 38.462 0.00 0.00 37.32 3.16
2862 2953 7.341769 CCCCTTTATCCATTTTGATGACAAGTA 59.658 37.037 0.00 0.00 37.32 2.24
2863 2954 8.917088 CCCTTTATCCATTTTGATGACAAGTAT 58.083 33.333 0.00 0.00 37.32 2.12
2869 2960 7.829725 TCCATTTTGATGACAAGTATTTCTGG 58.170 34.615 0.00 0.00 37.32 3.86
2870 2961 7.669304 TCCATTTTGATGACAAGTATTTCTGGA 59.331 33.333 0.00 0.00 37.32 3.86
2871 2962 7.756722 CCATTTTGATGACAAGTATTTCTGGAC 59.243 37.037 0.00 0.00 37.32 4.02
2872 2963 7.815840 TTTTGATGACAAGTATTTCTGGACA 57.184 32.000 0.00 0.00 37.32 4.02
2873 2964 7.439157 TTTGATGACAAGTATTTCTGGACAG 57.561 36.000 0.00 0.00 37.32 3.51
2874 2965 6.358974 TGATGACAAGTATTTCTGGACAGA 57.641 37.500 0.00 0.00 35.27 3.41
2875 2966 6.401394 TGATGACAAGTATTTCTGGACAGAG 58.599 40.000 1.92 0.00 38.88 3.35
2876 2967 5.152623 TGACAAGTATTTCTGGACAGAGG 57.847 43.478 1.92 0.00 38.88 3.69
2877 2968 4.020218 TGACAAGTATTTCTGGACAGAGGG 60.020 45.833 1.92 0.00 38.88 4.30
2878 2969 4.168101 ACAAGTATTTCTGGACAGAGGGA 58.832 43.478 1.92 0.00 38.88 4.20
2879 2970 4.223923 ACAAGTATTTCTGGACAGAGGGAG 59.776 45.833 1.92 0.00 38.88 4.30
2880 2971 4.067944 AGTATTTCTGGACAGAGGGAGT 57.932 45.455 1.92 0.00 38.88 3.85
2881 2972 5.208294 AGTATTTCTGGACAGAGGGAGTA 57.792 43.478 1.92 0.00 38.88 2.59
2893 2984 6.176014 ACAGAGGGAGTAATTTGTATAGCC 57.824 41.667 0.00 0.00 0.00 3.93
2944 3036 9.762381 ATAATTTTTAGGGGAACATGACAAGTA 57.238 29.630 0.00 0.00 0.00 2.24
2946 3038 6.887626 TTTTAGGGGAACATGACAAGTAAC 57.112 37.500 0.00 0.00 0.00 2.50
2952 3044 5.925969 GGGGAACATGACAAGTAACAATTTG 59.074 40.000 0.00 0.00 0.00 2.32
3268 3375 2.115291 GGATCACGCCCAAGCCTTC 61.115 63.158 0.00 0.00 34.57 3.46
3303 3410 3.567478 ATGTGGGGCTATTCTCTGTTC 57.433 47.619 0.00 0.00 0.00 3.18
3312 3419 4.505922 GGCTATTCTCTGTTCATCTTCGTG 59.494 45.833 0.00 0.00 0.00 4.35
3315 3422 0.994995 CTCTGTTCATCTTCGTGCCG 59.005 55.000 0.00 0.00 0.00 5.69
3413 3520 8.647143 GCACATTGCATATGTACCTTTTATTT 57.353 30.769 12.24 0.00 44.26 1.40
3434 3541 9.974980 TTATTTAACTTCTGTGGGAATTTTCAC 57.025 29.630 5.49 5.49 33.01 3.18
3436 3543 7.654022 TTAACTTCTGTGGGAATTTTCACTT 57.346 32.000 11.58 2.94 35.15 3.16
3463 3570 8.478775 TTGATGCAACTATATACTACCTCTGT 57.521 34.615 0.00 0.00 0.00 3.41
3464 3571 9.582648 TTGATGCAACTATATACTACCTCTGTA 57.417 33.333 0.00 0.00 0.00 2.74
3465 3572 9.011095 TGATGCAACTATATACTACCTCTGTAC 57.989 37.037 0.00 0.00 0.00 2.90
3466 3573 7.756395 TGCAACTATATACTACCTCTGTACC 57.244 40.000 0.00 0.00 0.00 3.34
3467 3574 7.292319 TGCAACTATATACTACCTCTGTACCA 58.708 38.462 0.00 0.00 0.00 3.25
3468 3575 7.781219 TGCAACTATATACTACCTCTGTACCAA 59.219 37.037 0.00 0.00 0.00 3.67
3469 3576 8.298140 GCAACTATATACTACCTCTGTACCAAG 58.702 40.741 0.00 0.00 0.00 3.61
3470 3577 9.570468 CAACTATATACTACCTCTGTACCAAGA 57.430 37.037 0.00 0.00 0.00 3.02
3478 3585 8.694581 ACTACCTCTGTACCAAGATATAAGTC 57.305 38.462 0.00 0.00 0.00 3.01
3479 3586 6.636562 ACCTCTGTACCAAGATATAAGTCG 57.363 41.667 0.00 0.00 0.00 4.18
3480 3587 6.127793 ACCTCTGTACCAAGATATAAGTCGT 58.872 40.000 0.00 0.00 0.00 4.34
3481 3588 6.606395 ACCTCTGTACCAAGATATAAGTCGTT 59.394 38.462 0.00 0.00 0.00 3.85
3482 3589 7.123847 ACCTCTGTACCAAGATATAAGTCGTTT 59.876 37.037 0.00 0.00 0.00 3.60
3483 3590 7.980099 CCTCTGTACCAAGATATAAGTCGTTTT 59.020 37.037 0.00 0.00 0.00 2.43
3484 3591 9.367444 CTCTGTACCAAGATATAAGTCGTTTTT 57.633 33.333 0.00 0.00 0.00 1.94
3485 3592 9.146984 TCTGTACCAAGATATAAGTCGTTTTTG 57.853 33.333 0.00 0.00 0.00 2.44
3486 3593 8.836268 TGTACCAAGATATAAGTCGTTTTTGT 57.164 30.769 0.00 0.00 0.00 2.83
3487 3594 9.926158 TGTACCAAGATATAAGTCGTTTTTGTA 57.074 29.630 0.00 0.00 0.00 2.41
3489 3596 8.488651 ACCAAGATATAAGTCGTTTTTGTAGG 57.511 34.615 0.00 0.00 0.00 3.18
3490 3597 7.065443 ACCAAGATATAAGTCGTTTTTGTAGGC 59.935 37.037 0.00 0.00 0.00 3.93
3491 3598 7.280205 CCAAGATATAAGTCGTTTTTGTAGGCT 59.720 37.037 0.00 0.00 0.00 4.58
3492 3599 7.772332 AGATATAAGTCGTTTTTGTAGGCTG 57.228 36.000 0.00 0.00 0.00 4.85
3493 3600 7.328737 AGATATAAGTCGTTTTTGTAGGCTGT 58.671 34.615 0.00 0.00 0.00 4.40
3494 3601 5.857822 ATAAGTCGTTTTTGTAGGCTGTC 57.142 39.130 0.00 0.00 0.00 3.51
3495 3602 3.470645 AGTCGTTTTTGTAGGCTGTCT 57.529 42.857 0.00 0.00 0.00 3.41
3496 3603 3.805207 AGTCGTTTTTGTAGGCTGTCTT 58.195 40.909 0.00 0.00 0.00 3.01
3497 3604 4.952460 AGTCGTTTTTGTAGGCTGTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
3498 3605 5.548406 AGTCGTTTTTGTAGGCTGTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
3499 3606 6.694447 AGTCGTTTTTGTAGGCTGTCTTATA 58.306 36.000 0.00 0.00 0.00 0.98
3500 3607 7.328737 AGTCGTTTTTGTAGGCTGTCTTATAT 58.671 34.615 0.00 0.00 0.00 0.86
3501 3608 7.822822 AGTCGTTTTTGTAGGCTGTCTTATATT 59.177 33.333 0.00 0.00 0.00 1.28
3502 3609 8.448615 GTCGTTTTTGTAGGCTGTCTTATATTT 58.551 33.333 0.00 0.00 0.00 1.40
3503 3610 9.005777 TCGTTTTTGTAGGCTGTCTTATATTTT 57.994 29.630 0.00 0.00 0.00 1.82
3504 3611 9.061610 CGTTTTTGTAGGCTGTCTTATATTTTG 57.938 33.333 0.00 0.00 0.00 2.44
3509 3616 8.812147 TGTAGGCTGTCTTATATTTTGATACG 57.188 34.615 0.00 0.00 0.00 3.06
3510 3617 7.870954 TGTAGGCTGTCTTATATTTTGATACGG 59.129 37.037 0.00 0.00 0.00 4.02
3511 3618 7.062749 AGGCTGTCTTATATTTTGATACGGA 57.937 36.000 0.00 0.00 0.00 4.69
3512 3619 7.155328 AGGCTGTCTTATATTTTGATACGGAG 58.845 38.462 0.00 0.00 0.00 4.63
3513 3620 7.015292 AGGCTGTCTTATATTTTGATACGGAGA 59.985 37.037 0.00 0.00 0.00 3.71
3514 3621 7.329717 GGCTGTCTTATATTTTGATACGGAGAG 59.670 40.741 0.00 0.00 0.00 3.20
3515 3622 8.082852 GCTGTCTTATATTTTGATACGGAGAGA 58.917 37.037 0.00 0.00 0.00 3.10
3516 3623 9.619316 CTGTCTTATATTTTGATACGGAGAGAG 57.381 37.037 0.00 0.00 0.00 3.20
3595 3703 7.531716 TGATAATTTTATGGTTGTCCGTGTTC 58.468 34.615 0.00 0.00 36.30 3.18
3684 3793 3.131933 TCTCTTTGCCTCAGATACTGCTC 59.868 47.826 0.00 0.00 0.00 4.26
3801 3910 5.555017 GAAGGAGCTGATATGATGGCTTTA 58.445 41.667 0.00 0.00 35.01 1.85
3814 3923 1.199789 TGGCTTTAATCGCAAGTGCAG 59.800 47.619 3.87 0.00 42.21 4.41
3967 4076 1.843851 ACCCTTCTGAACAACTCCACA 59.156 47.619 0.00 0.00 0.00 4.17
4006 4116 7.555554 TGAGTACTCTATAGTAAGTGGGACAAC 59.444 40.741 23.01 0.00 39.27 3.32
4009 4119 5.892686 ACTCTATAGTAAGTGGGACAACCTC 59.107 44.000 0.00 0.00 34.64 3.85
4018 4128 2.546789 GTGGGACAACCTCTTTAACACG 59.453 50.000 0.00 0.00 44.16 4.49
4024 4134 4.952460 ACAACCTCTTTAACACGCTTCTA 58.048 39.130 0.00 0.00 0.00 2.10
4095 4205 4.012374 TCTGTTCTGCCATTCATCTTTCC 58.988 43.478 0.00 0.00 0.00 3.13
4189 4299 7.220875 GTGTCTGTTTTCAAGATTTTTGACTCC 59.779 37.037 0.00 0.00 0.00 3.85
4442 4713 1.232909 TCCCTTGGGTTTAACCACCA 58.767 50.000 16.58 2.66 41.02 4.17
4470 4741 9.683069 ACTGAACAAATCATGAATGACTTAAAC 57.317 29.630 16.28 3.43 40.03 2.01
4506 4777 8.563289 CGAAGCTCGAAAAAGTAGATATAGTT 57.437 34.615 0.00 0.00 43.74 2.24
4550 4821 4.916041 ATTTGGACTGAGATGACCTTCA 57.084 40.909 0.00 0.00 0.00 3.02
4576 4847 5.022122 TCAAATCATTGGGCTGTTTGGATA 58.978 37.500 0.00 0.00 37.15 2.59
4581 4852 4.402155 TCATTGGGCTGTTTGGATATCAAC 59.598 41.667 4.83 2.13 34.67 3.18
4593 4864 3.689161 TGGATATCAACCAAAGCTTGTCG 59.311 43.478 0.00 0.00 34.25 4.35
4629 4900 6.899075 TGCCAGAAGTTTAATAGTACTCCCTA 59.101 38.462 0.00 0.00 0.00 3.53
4652 4923 5.297547 ACGATCCATATTAATTGACGCTGT 58.702 37.500 0.00 0.00 0.00 4.40
4672 4943 6.253013 GCTGTTTTTGTACAACTTTCGTACT 58.747 36.000 8.07 0.00 39.96 2.73
4880 5630 6.128742 GCTTAATCTTGACAACCAAATGCAAG 60.129 38.462 0.00 0.00 36.57 4.01
4925 5678 6.418585 ACTATAGCTAAAACAAAGTTCCGC 57.581 37.500 0.00 0.00 0.00 5.54
4968 5721 8.678593 TGGTAACATGACACATAACAAAGTTA 57.321 30.769 0.00 0.00 46.17 2.24
4970 5723 9.953697 GGTAACATGACACATAACAAAGTTAAA 57.046 29.630 0.00 0.00 0.00 1.52
5027 5780 8.564574 ACATAACACATAACAAAGGTTACACAG 58.435 33.333 0.00 0.00 41.99 3.66
5131 7448 6.782494 ACCACCCAGATTGAAAGAAATAAACT 59.218 34.615 0.00 0.00 0.00 2.66
5143 7460 9.581099 TGAAAGAAATAAACTTGAACTTTCACC 57.419 29.630 0.00 0.00 43.19 4.02
5145 7462 7.898014 AGAAATAAACTTGAACTTTCACCCT 57.102 32.000 0.00 0.00 36.83 4.34
5154 7471 5.319043 TGAACTTTCACCCTATTCAACCT 57.681 39.130 0.00 0.00 31.01 3.50
5304 7621 2.568546 TCTGAAGCTCCCCAGGAATA 57.431 50.000 9.82 0.00 0.00 1.75
5310 7627 3.637821 AGCTCCCCAGGAATATCACTA 57.362 47.619 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.599866 CCAATAAGTGATCATGAACTACTTACA 57.400 33.333 21.80 10.98 36.87 2.41
34 35 3.248266 ACGGTCGCAAACTAGTAATGAC 58.752 45.455 11.66 9.84 0.00 3.06
153 156 6.598064 GGGTATCAAGACTAGCAAAGCTTAAA 59.402 38.462 0.00 0.00 40.44 1.52
204 207 7.390823 TGTTATTGTAGTAATCTGTGAGCCAA 58.609 34.615 0.00 0.00 0.00 4.52
247 250 0.028110 TCTCACGTCAGATCATCGCG 59.972 55.000 0.00 0.00 0.00 5.87
272 276 6.225981 AGAAGAACTCCAAAACAAGCAAAT 57.774 33.333 0.00 0.00 0.00 2.32
344 348 4.047166 TCAAATGACATCCACCCTCCTAT 58.953 43.478 0.00 0.00 0.00 2.57
348 352 3.356529 ACTCAAATGACATCCACCCTC 57.643 47.619 0.00 0.00 0.00 4.30
373 377 4.699735 TCCGACTATGCATGAAACACAAAT 59.300 37.500 10.16 0.00 0.00 2.32
386 390 0.322975 AGGGCATCATCCGACTATGC 59.677 55.000 7.85 7.85 44.16 3.14
406 410 7.475256 CGCATGAATACAACAACATCGTATATG 59.525 37.037 0.00 0.00 0.00 1.78
409 413 5.277297 CCGCATGAATACAACAACATCGTAT 60.277 40.000 0.00 0.00 0.00 3.06
412 416 3.353524 CCGCATGAATACAACAACATCG 58.646 45.455 0.00 0.00 0.00 3.84
431 435 5.879237 ACATACAAAAGACATACAATGCCG 58.121 37.500 0.00 0.00 0.00 5.69
534 539 4.712122 GAGAGAAACTCGAAGGTCTCAT 57.288 45.455 16.78 6.28 39.20 2.90
550 555 5.359292 CCAATATGCGATCCTATCTGAGAGA 59.641 44.000 0.00 0.00 0.00 3.10
597 602 9.274065 CGAACTTAAAAAGAAAGGTACATATGC 57.726 33.333 1.58 0.00 0.00 3.14
598 603 9.274065 GCGAACTTAAAAAGAAAGGTACATATG 57.726 33.333 0.00 0.00 0.00 1.78
599 604 8.456471 GGCGAACTTAAAAAGAAAGGTACATAT 58.544 33.333 0.00 0.00 0.00 1.78
600 605 7.662669 AGGCGAACTTAAAAAGAAAGGTACATA 59.337 33.333 0.00 0.00 0.00 2.29
601 606 6.489022 AGGCGAACTTAAAAAGAAAGGTACAT 59.511 34.615 0.00 0.00 0.00 2.29
602 607 5.824097 AGGCGAACTTAAAAAGAAAGGTACA 59.176 36.000 0.00 0.00 0.00 2.90
603 608 6.017687 TGAGGCGAACTTAAAAAGAAAGGTAC 60.018 38.462 0.00 0.00 0.00 3.34
604 609 6.056884 TGAGGCGAACTTAAAAAGAAAGGTA 58.943 36.000 0.00 0.00 0.00 3.08
605 610 4.885325 TGAGGCGAACTTAAAAAGAAAGGT 59.115 37.500 0.00 0.00 0.00 3.50
606 611 5.432885 TGAGGCGAACTTAAAAAGAAAGG 57.567 39.130 0.00 0.00 0.00 3.11
607 612 7.138736 TGAATGAGGCGAACTTAAAAAGAAAG 58.861 34.615 0.00 0.00 0.00 2.62
608 613 7.033530 TGAATGAGGCGAACTTAAAAAGAAA 57.966 32.000 0.00 0.00 0.00 2.52
609 614 6.627395 TGAATGAGGCGAACTTAAAAAGAA 57.373 33.333 0.00 0.00 0.00 2.52
610 615 6.817765 ATGAATGAGGCGAACTTAAAAAGA 57.182 33.333 0.00 0.00 0.00 2.52
611 616 7.873739 AAATGAATGAGGCGAACTTAAAAAG 57.126 32.000 0.00 0.00 0.00 2.27
612 617 9.921637 ATAAAATGAATGAGGCGAACTTAAAAA 57.078 25.926 0.00 0.00 0.00 1.94
613 618 9.921637 AATAAAATGAATGAGGCGAACTTAAAA 57.078 25.926 0.00 0.00 0.00 1.52
614 619 9.921637 AAATAAAATGAATGAGGCGAACTTAAA 57.078 25.926 0.00 0.00 0.00 1.52
615 620 9.921637 AAAATAAAATGAATGAGGCGAACTTAA 57.078 25.926 0.00 0.00 0.00 1.85
616 621 9.352784 CAAAATAAAATGAATGAGGCGAACTTA 57.647 29.630 0.00 0.00 0.00 2.24
617 622 7.331687 CCAAAATAAAATGAATGAGGCGAACTT 59.668 33.333 0.00 0.00 0.00 2.66
618 623 6.813152 CCAAAATAAAATGAATGAGGCGAACT 59.187 34.615 0.00 0.00 0.00 3.01
619 624 6.811170 TCCAAAATAAAATGAATGAGGCGAAC 59.189 34.615 0.00 0.00 0.00 3.95
620 625 6.929625 TCCAAAATAAAATGAATGAGGCGAA 58.070 32.000 0.00 0.00 0.00 4.70
621 626 6.522625 TCCAAAATAAAATGAATGAGGCGA 57.477 33.333 0.00 0.00 0.00 5.54
622 627 5.232838 GCTCCAAAATAAAATGAATGAGGCG 59.767 40.000 0.00 0.00 0.00 5.52
623 628 6.257193 CAGCTCCAAAATAAAATGAATGAGGC 59.743 38.462 0.00 0.00 0.00 4.70
624 629 7.490402 GTCAGCTCCAAAATAAAATGAATGAGG 59.510 37.037 0.00 0.00 0.00 3.86
625 630 8.030692 TGTCAGCTCCAAAATAAAATGAATGAG 58.969 33.333 0.00 0.00 0.00 2.90
626 631 7.894708 TGTCAGCTCCAAAATAAAATGAATGA 58.105 30.769 0.00 0.00 0.00 2.57
627 632 8.537049 TTGTCAGCTCCAAAATAAAATGAATG 57.463 30.769 0.00 0.00 0.00 2.67
628 633 8.587608 TCTTGTCAGCTCCAAAATAAAATGAAT 58.412 29.630 0.00 0.00 0.00 2.57
629 634 7.950512 TCTTGTCAGCTCCAAAATAAAATGAA 58.049 30.769 0.00 0.00 0.00 2.57
630 635 7.523293 TCTTGTCAGCTCCAAAATAAAATGA 57.477 32.000 0.00 0.00 0.00 2.57
631 636 7.652909 TGTTCTTGTCAGCTCCAAAATAAAATG 59.347 33.333 0.00 0.00 0.00 2.32
632 637 7.725251 TGTTCTTGTCAGCTCCAAAATAAAAT 58.275 30.769 0.00 0.00 0.00 1.82
633 638 7.106439 TGTTCTTGTCAGCTCCAAAATAAAA 57.894 32.000 0.00 0.00 0.00 1.52
634 639 6.707440 TGTTCTTGTCAGCTCCAAAATAAA 57.293 33.333 0.00 0.00 0.00 1.40
635 640 6.899393 ATGTTCTTGTCAGCTCCAAAATAA 57.101 33.333 0.00 0.00 0.00 1.40
636 641 6.939730 TGTATGTTCTTGTCAGCTCCAAAATA 59.060 34.615 0.00 0.00 0.00 1.40
637 642 5.769662 TGTATGTTCTTGTCAGCTCCAAAAT 59.230 36.000 0.00 0.00 0.00 1.82
638 643 5.008613 GTGTATGTTCTTGTCAGCTCCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
639 644 4.515191 GTGTATGTTCTTGTCAGCTCCAAA 59.485 41.667 0.00 0.00 0.00 3.28
640 645 4.065088 GTGTATGTTCTTGTCAGCTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
641 646 3.070878 TGTGTATGTTCTTGTCAGCTCCA 59.929 43.478 0.00 0.00 0.00 3.86
642 647 3.433615 GTGTGTATGTTCTTGTCAGCTCC 59.566 47.826 0.00 0.00 0.00 4.70
643 648 4.310769 AGTGTGTATGTTCTTGTCAGCTC 58.689 43.478 0.00 0.00 0.00 4.09
644 649 4.342862 AGTGTGTATGTTCTTGTCAGCT 57.657 40.909 0.00 0.00 0.00 4.24
645 650 4.752101 AGAAGTGTGTATGTTCTTGTCAGC 59.248 41.667 0.00 0.00 0.00 4.26
646 651 6.703607 AGAAGAAGTGTGTATGTTCTTGTCAG 59.296 38.462 1.43 0.00 39.96 3.51
647 652 6.479990 CAGAAGAAGTGTGTATGTTCTTGTCA 59.520 38.462 1.43 0.00 39.96 3.58
648 653 6.701841 TCAGAAGAAGTGTGTATGTTCTTGTC 59.298 38.462 1.43 0.00 39.96 3.18
649 654 6.582636 TCAGAAGAAGTGTGTATGTTCTTGT 58.417 36.000 1.43 0.00 39.96 3.16
650 655 7.482654 TTCAGAAGAAGTGTGTATGTTCTTG 57.517 36.000 1.43 0.00 39.96 3.02
651 656 8.506168 TTTTCAGAAGAAGTGTGTATGTTCTT 57.494 30.769 0.00 0.00 42.02 2.52
652 657 8.506168 TTTTTCAGAAGAAGTGTGTATGTTCT 57.494 30.769 0.00 0.00 34.71 3.01
693 698 7.080724 GCACAATGTGTTTTTCTTTTGGAAAA 58.919 30.769 15.36 0.00 41.69 2.29
694 699 6.205464 TGCACAATGTGTTTTTCTTTTGGAAA 59.795 30.769 15.36 0.00 37.71 3.13
695 700 5.702670 TGCACAATGTGTTTTTCTTTTGGAA 59.297 32.000 15.36 0.00 35.75 3.53
696 701 5.240891 TGCACAATGTGTTTTTCTTTTGGA 58.759 33.333 15.36 0.00 35.75 3.53
697 702 5.542616 TGCACAATGTGTTTTTCTTTTGG 57.457 34.783 15.36 0.00 35.75 3.28
711 716 1.473677 ACCCATCGAACATGCACAATG 59.526 47.619 0.00 0.00 42.48 2.82
712 717 1.838112 ACCCATCGAACATGCACAAT 58.162 45.000 0.00 0.00 0.00 2.71
713 718 1.269174 CAACCCATCGAACATGCACAA 59.731 47.619 0.00 0.00 0.00 3.33
714 719 0.880441 CAACCCATCGAACATGCACA 59.120 50.000 0.00 0.00 0.00 4.57
715 720 0.171007 CCAACCCATCGAACATGCAC 59.829 55.000 0.00 0.00 0.00 4.57
716 721 0.251121 ACCAACCCATCGAACATGCA 60.251 50.000 0.00 0.00 0.00 3.96
717 722 0.451783 GACCAACCCATCGAACATGC 59.548 55.000 0.00 0.00 0.00 4.06
718 723 0.726827 CGACCAACCCATCGAACATG 59.273 55.000 0.00 0.00 40.86 3.21
719 724 0.611200 TCGACCAACCCATCGAACAT 59.389 50.000 0.00 0.00 43.97 2.71
720 725 2.051105 TCGACCAACCCATCGAACA 58.949 52.632 0.00 0.00 43.97 3.18
724 729 1.136305 ACACTATCGACCAACCCATCG 59.864 52.381 0.00 0.00 39.72 3.84
725 730 2.936498 CAACACTATCGACCAACCCATC 59.064 50.000 0.00 0.00 0.00 3.51
726 731 2.355716 CCAACACTATCGACCAACCCAT 60.356 50.000 0.00 0.00 0.00 4.00
727 732 1.002659 CCAACACTATCGACCAACCCA 59.997 52.381 0.00 0.00 0.00 4.51
728 733 1.677820 CCCAACACTATCGACCAACCC 60.678 57.143 0.00 0.00 0.00 4.11
729 734 1.734163 CCCAACACTATCGACCAACC 58.266 55.000 0.00 0.00 0.00 3.77
730 735 1.084289 GCCCAACACTATCGACCAAC 58.916 55.000 0.00 0.00 0.00 3.77
731 736 0.035820 GGCCCAACACTATCGACCAA 60.036 55.000 0.00 0.00 0.00 3.67
732 737 1.195442 TGGCCCAACACTATCGACCA 61.195 55.000 0.00 0.00 0.00 4.02
733 738 0.035820 TTGGCCCAACACTATCGACC 60.036 55.000 0.00 0.00 0.00 4.79
734 739 2.038387 ATTGGCCCAACACTATCGAC 57.962 50.000 0.00 0.00 0.00 4.20
735 740 2.639065 GAATTGGCCCAACACTATCGA 58.361 47.619 0.00 0.00 0.00 3.59
736 741 1.676006 GGAATTGGCCCAACACTATCG 59.324 52.381 0.00 0.00 0.00 2.92
737 742 3.018423 AGGAATTGGCCCAACACTATC 57.982 47.619 0.00 0.00 0.00 2.08
738 743 4.601406 TTAGGAATTGGCCCAACACTAT 57.399 40.909 0.00 0.00 0.00 2.12
739 744 4.083565 GTTTAGGAATTGGCCCAACACTA 58.916 43.478 0.00 0.00 0.00 2.74
740 745 2.897326 GTTTAGGAATTGGCCCAACACT 59.103 45.455 0.00 0.00 0.00 3.55
741 746 2.352323 CGTTTAGGAATTGGCCCAACAC 60.352 50.000 0.00 0.00 0.00 3.32
742 747 1.889829 CGTTTAGGAATTGGCCCAACA 59.110 47.619 0.00 0.00 0.00 3.33
743 748 1.203758 CCGTTTAGGAATTGGCCCAAC 59.796 52.381 0.00 0.00 45.00 3.77
744 749 1.551452 CCGTTTAGGAATTGGCCCAA 58.449 50.000 0.00 0.00 45.00 4.12
745 750 0.323908 CCCGTTTAGGAATTGGCCCA 60.324 55.000 0.00 0.00 45.00 5.36
746 751 0.323999 ACCCGTTTAGGAATTGGCCC 60.324 55.000 0.00 0.00 45.00 5.80
747 752 1.552578 AACCCGTTTAGGAATTGGCC 58.447 50.000 0.00 0.00 45.00 5.36
748 753 4.399934 TGATAAACCCGTTTAGGAATTGGC 59.600 41.667 6.24 0.00 45.00 4.52
749 754 5.448089 CGTGATAAACCCGTTTAGGAATTGG 60.448 44.000 6.24 0.00 45.00 3.16
750 755 5.352016 TCGTGATAAACCCGTTTAGGAATTG 59.648 40.000 6.24 0.00 45.00 2.32
751 756 5.490159 TCGTGATAAACCCGTTTAGGAATT 58.510 37.500 6.24 0.00 45.00 2.17
752 757 5.088680 TCGTGATAAACCCGTTTAGGAAT 57.911 39.130 6.24 0.00 45.00 3.01
753 758 4.021192 ACTCGTGATAAACCCGTTTAGGAA 60.021 41.667 6.24 0.00 45.00 3.36
754 759 3.511146 ACTCGTGATAAACCCGTTTAGGA 59.489 43.478 6.24 1.44 45.00 2.94
755 760 3.615496 CACTCGTGATAAACCCGTTTAGG 59.385 47.826 6.24 0.00 38.30 2.69
756 761 4.487948 TCACTCGTGATAAACCCGTTTAG 58.512 43.478 6.24 0.00 38.30 1.85
757 762 4.218200 TCTCACTCGTGATAAACCCGTTTA 59.782 41.667 0.00 2.68 39.13 2.01
758 763 3.006110 TCTCACTCGTGATAAACCCGTTT 59.994 43.478 0.00 0.00 39.13 3.60
759 764 2.559668 TCTCACTCGTGATAAACCCGTT 59.440 45.455 0.00 0.00 39.13 4.44
760 765 2.094854 GTCTCACTCGTGATAAACCCGT 60.095 50.000 0.00 0.00 39.13 5.28
761 766 2.527100 GTCTCACTCGTGATAAACCCG 58.473 52.381 0.00 0.00 39.13 5.28
762 767 2.232941 TGGTCTCACTCGTGATAAACCC 59.767 50.000 16.88 8.00 39.13 4.11
763 768 3.251571 GTGGTCTCACTCGTGATAAACC 58.748 50.000 14.51 14.51 40.58 3.27
775 780 1.411246 TGTGTGGTGTAGTGGTCTCAC 59.589 52.381 0.00 0.00 43.93 3.51
776 781 1.411246 GTGTGTGGTGTAGTGGTCTCA 59.589 52.381 0.00 0.00 0.00 3.27
777 782 1.270147 GGTGTGTGGTGTAGTGGTCTC 60.270 57.143 0.00 0.00 0.00 3.36
778 783 0.756903 GGTGTGTGGTGTAGTGGTCT 59.243 55.000 0.00 0.00 0.00 3.85
779 784 0.466543 TGGTGTGTGGTGTAGTGGTC 59.533 55.000 0.00 0.00 0.00 4.02
780 785 0.468226 CTGGTGTGTGGTGTAGTGGT 59.532 55.000 0.00 0.00 0.00 4.16
781 786 0.884704 GCTGGTGTGTGGTGTAGTGG 60.885 60.000 0.00 0.00 0.00 4.00
782 787 0.884704 GGCTGGTGTGTGGTGTAGTG 60.885 60.000 0.00 0.00 0.00 2.74
783 788 1.341913 TGGCTGGTGTGTGGTGTAGT 61.342 55.000 0.00 0.00 0.00 2.73
784 789 0.884704 GTGGCTGGTGTGTGGTGTAG 60.885 60.000 0.00 0.00 0.00 2.74
785 790 1.147376 GTGGCTGGTGTGTGGTGTA 59.853 57.895 0.00 0.00 0.00 2.90
786 791 2.124320 GTGGCTGGTGTGTGGTGT 60.124 61.111 0.00 0.00 0.00 4.16
787 792 2.124362 TGTGGCTGGTGTGTGGTG 60.124 61.111 0.00 0.00 0.00 4.17
788 793 2.124320 GTGTGGCTGGTGTGTGGT 60.124 61.111 0.00 0.00 0.00 4.16
789 794 1.727511 CTTGTGTGGCTGGTGTGTGG 61.728 60.000 0.00 0.00 0.00 4.17
790 795 1.727511 CCTTGTGTGGCTGGTGTGTG 61.728 60.000 0.00 0.00 0.00 3.82
791 796 1.453745 CCTTGTGTGGCTGGTGTGT 60.454 57.895 0.00 0.00 0.00 3.72
792 797 2.195567 CCCTTGTGTGGCTGGTGTG 61.196 63.158 0.00 0.00 0.00 3.82
793 798 2.195683 CCCTTGTGTGGCTGGTGT 59.804 61.111 0.00 0.00 0.00 4.16
794 799 2.598394 CCCCTTGTGTGGCTGGTG 60.598 66.667 0.00 0.00 0.00 4.17
795 800 4.603535 GCCCCTTGTGTGGCTGGT 62.604 66.667 0.00 0.00 44.46 4.00
797 802 4.954970 ACGCCCCTTGTGTGGCTG 62.955 66.667 0.00 0.00 45.71 4.85
806 811 1.923356 AATCAAACATGACGCCCCTT 58.077 45.000 0.00 0.00 0.00 3.95
814 819 3.005261 CGTGGGGTTGAAATCAAACATGA 59.995 43.478 12.83 0.00 45.01 3.07
1032 1051 3.700350 AGTGGGGAGGGAGGAGGG 61.700 72.222 0.00 0.00 0.00 4.30
1033 1052 2.041405 GAGTGGGGAGGGAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
1034 1053 2.443016 CGAGTGGGGAGGGAGGAG 60.443 72.222 0.00 0.00 0.00 3.69
1035 1054 4.779733 GCGAGTGGGGAGGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
1038 1057 4.649705 TTGGCGAGTGGGGAGGGA 62.650 66.667 0.00 0.00 0.00 4.20
1280 1307 4.352039 GCAGATGCAACAGAATCAATCAG 58.648 43.478 0.00 0.00 41.59 2.90
1659 1689 5.311265 AGCTAGTACCCACTAAACCAAAAC 58.689 41.667 0.00 0.00 36.81 2.43
1690 1737 5.485353 TGGGCCATTGGAATGTAAATACAAA 59.515 36.000 0.00 0.00 39.99 2.83
1723 1774 7.013369 GGCCCTTTCGAACTGAAATCTATAAAT 59.987 37.037 0.00 0.00 45.21 1.40
1774 1833 5.357878 TGTGCTTTGTTCAAGATTTCTCACT 59.642 36.000 0.00 0.00 33.80 3.41
1801 1860 0.631212 GATGGAAACCATGGGGAGGT 59.369 55.000 18.09 0.00 45.26 3.85
1915 1984 3.341857 ACGCAATCTCTACGACTCATC 57.658 47.619 0.00 0.00 0.00 2.92
1923 1992 7.914346 ACAACAGTTATAGTACGCAATCTCTAC 59.086 37.037 0.00 0.00 0.00 2.59
1942 2011 5.247862 TCATCATGTGCTCAATACAACAGT 58.752 37.500 0.00 0.00 0.00 3.55
1952 2021 5.349543 GCACGATATTATCATCATGTGCTCA 59.650 40.000 18.53 0.00 45.78 4.26
1972 2041 3.957671 ATAGCAGTCATGAAATGCACG 57.042 42.857 27.07 2.60 46.21 5.34
2048 2117 2.451490 TGGACTGGAGACTGCTAGAAG 58.549 52.381 0.00 0.00 0.00 2.85
2055 2125 2.810852 GCTTTCTTTGGACTGGAGACTG 59.189 50.000 0.00 0.00 0.00 3.51
2083 2153 7.047271 AGGTAACAAACAAAGAACAAATGCAT 58.953 30.769 0.00 0.00 41.41 3.96
2107 2177 2.806945 TGTCTGGGATAAAGGCCAAG 57.193 50.000 5.01 0.00 0.00 3.61
2176 2254 5.396484 ACAGATGCAAAAGAAACATCATCG 58.604 37.500 0.00 0.00 42.12 3.84
2210 2288 5.161358 GCAAAGAGGGTAAAAAGGATTTCG 58.839 41.667 0.00 0.00 37.28 3.46
2217 2295 3.005791 CCACCTGCAAAGAGGGTAAAAAG 59.994 47.826 0.00 0.00 37.45 2.27
2360 2439 4.949856 GCATCTATCTTCCTGAAAAACCCA 59.050 41.667 0.00 0.00 0.00 4.51
2363 2442 8.563732 GGATTAGCATCTATCTTCCTGAAAAAC 58.436 37.037 0.00 0.00 0.00 2.43
2415 2494 0.109597 CAAACGTGGAAGCAGATGGC 60.110 55.000 0.00 0.00 45.30 4.40
2417 2496 3.624326 TTTCAAACGTGGAAGCAGATG 57.376 42.857 0.00 0.00 0.00 2.90
2419 2498 4.647424 AAATTTCAAACGTGGAAGCAGA 57.353 36.364 0.00 0.00 0.00 4.26
2429 2508 7.683676 CACAAACTGACTCAAAAATTTCAAACG 59.316 33.333 0.00 0.00 0.00 3.60
2447 2526 6.146021 GCCTCAAATCATTTAACCACAAACTG 59.854 38.462 0.00 0.00 0.00 3.16
2448 2527 6.183360 TGCCTCAAATCATTTAACCACAAACT 60.183 34.615 0.00 0.00 0.00 2.66
2449 2528 5.988561 TGCCTCAAATCATTTAACCACAAAC 59.011 36.000 0.00 0.00 0.00 2.93
2450 2529 6.166984 TGCCTCAAATCATTTAACCACAAA 57.833 33.333 0.00 0.00 0.00 2.83
2451 2530 5.798125 TGCCTCAAATCATTTAACCACAA 57.202 34.783 0.00 0.00 0.00 3.33
2452 2531 5.798125 TTGCCTCAAATCATTTAACCACA 57.202 34.783 0.00 0.00 0.00 4.17
2453 2532 6.092533 CCATTTGCCTCAAATCATTTAACCAC 59.907 38.462 2.13 0.00 41.40 4.16
2454 2533 6.171921 CCATTTGCCTCAAATCATTTAACCA 58.828 36.000 2.13 0.00 41.40 3.67
2455 2534 6.172630 ACCATTTGCCTCAAATCATTTAACC 58.827 36.000 2.13 0.00 41.40 2.85
2456 2535 6.873076 TGACCATTTGCCTCAAATCATTTAAC 59.127 34.615 2.13 0.00 41.40 2.01
2457 2536 7.002250 TGACCATTTGCCTCAAATCATTTAA 57.998 32.000 2.13 0.00 41.40 1.52
2490 2581 2.622942 GTGAATTGCCCTTGTTGTGAGA 59.377 45.455 0.00 0.00 0.00 3.27
2495 2586 4.440880 TCTTTTGTGAATTGCCCTTGTTG 58.559 39.130 0.00 0.00 0.00 3.33
2515 2606 9.944376 ACATGTTAACAAATAGTGTAGTCATCT 57.056 29.630 13.23 0.00 40.60 2.90
2517 2608 8.869897 CGACATGTTAACAAATAGTGTAGTCAT 58.130 33.333 13.23 0.00 40.60 3.06
2518 2609 8.083462 TCGACATGTTAACAAATAGTGTAGTCA 58.917 33.333 13.23 0.00 40.60 3.41
2519 2610 8.456904 TCGACATGTTAACAAATAGTGTAGTC 57.543 34.615 13.23 8.40 40.60 2.59
2520 2611 8.086522 ACTCGACATGTTAACAAATAGTGTAGT 58.913 33.333 13.23 9.98 40.60 2.73
2521 2612 8.373256 CACTCGACATGTTAACAAATAGTGTAG 58.627 37.037 13.23 11.91 40.60 2.74
2522 2613 8.083462 TCACTCGACATGTTAACAAATAGTGTA 58.917 33.333 24.00 15.57 40.60 2.90
2523 2614 6.926826 TCACTCGACATGTTAACAAATAGTGT 59.073 34.615 24.00 18.92 44.64 3.55
2524 2615 7.346208 TCACTCGACATGTTAACAAATAGTG 57.654 36.000 21.61 21.61 33.60 2.74
2525 2616 9.817809 ATATCACTCGACATGTTAACAAATAGT 57.182 29.630 13.23 9.01 0.00 2.12
2527 2618 9.810545 TGATATCACTCGACATGTTAACAAATA 57.189 29.630 13.23 0.00 0.00 1.40
2528 2619 8.716646 TGATATCACTCGACATGTTAACAAAT 57.283 30.769 13.23 3.35 0.00 2.32
2529 2620 8.716646 ATGATATCACTCGACATGTTAACAAA 57.283 30.769 13.23 0.00 0.00 2.83
2530 2621 9.810545 TTATGATATCACTCGACATGTTAACAA 57.189 29.630 13.23 0.00 0.00 2.83
2531 2622 9.463443 CTTATGATATCACTCGACATGTTAACA 57.537 33.333 11.41 11.41 0.00 2.41
2532 2623 9.464714 ACTTATGATATCACTCGACATGTTAAC 57.535 33.333 7.78 0.00 0.00 2.01
2534 2625 9.463443 CAACTTATGATATCACTCGACATGTTA 57.537 33.333 7.78 0.00 0.00 2.41
2535 2626 7.981789 ACAACTTATGATATCACTCGACATGTT 59.018 33.333 7.78 2.85 0.00 2.71
2536 2627 7.492524 ACAACTTATGATATCACTCGACATGT 58.507 34.615 7.78 0.00 0.00 3.21
2537 2628 7.936950 ACAACTTATGATATCACTCGACATG 57.063 36.000 7.78 4.64 0.00 3.21
2538 2629 7.810282 GCTACAACTTATGATATCACTCGACAT 59.190 37.037 7.78 0.00 0.00 3.06
2539 2630 7.139392 GCTACAACTTATGATATCACTCGACA 58.861 38.462 7.78 0.00 0.00 4.35
2540 2631 7.113684 GTGCTACAACTTATGATATCACTCGAC 59.886 40.741 7.78 0.00 0.00 4.20
2543 2634 6.918569 ACGTGCTACAACTTATGATATCACTC 59.081 38.462 7.78 0.00 0.00 3.51
2572 2663 8.084684 CAGTACTCTCAATAATACTGCAGCATA 58.915 37.037 15.27 4.83 38.45 3.14
2594 2685 0.753867 TCTGGCACGTTCCAACAGTA 59.246 50.000 8.63 0.00 35.36 2.74
2606 2697 4.168760 GCTTCATTACACAATTCTGGCAC 58.831 43.478 0.00 0.00 0.00 5.01
2622 2713 5.282055 TGCTAGTGCTAGTATTGCTTCAT 57.718 39.130 7.90 0.00 40.48 2.57
2646 2737 6.899393 TTAAAATTTCCATCTGCTGACACT 57.101 33.333 0.00 0.00 0.00 3.55
2647 2738 8.437742 CAAATTAAAATTTCCATCTGCTGACAC 58.562 33.333 0.00 0.00 36.52 3.67
2648 2739 7.603404 CCAAATTAAAATTTCCATCTGCTGACA 59.397 33.333 0.00 0.00 36.52 3.58
2649 2740 7.064966 CCCAAATTAAAATTTCCATCTGCTGAC 59.935 37.037 0.00 0.00 36.52 3.51
2651 2742 6.316890 CCCCAAATTAAAATTTCCATCTGCTG 59.683 38.462 0.00 0.00 36.52 4.41
2652 2743 6.215227 TCCCCAAATTAAAATTTCCATCTGCT 59.785 34.615 0.00 0.00 36.52 4.24
2653 2744 6.413892 TCCCCAAATTAAAATTTCCATCTGC 58.586 36.000 0.00 0.00 36.52 4.26
2654 2745 8.102676 ACTTCCCCAAATTAAAATTTCCATCTG 58.897 33.333 0.00 0.00 36.52 2.90
2655 2746 8.102676 CACTTCCCCAAATTAAAATTTCCATCT 58.897 33.333 0.00 0.00 36.52 2.90
2656 2747 7.882791 ACACTTCCCCAAATTAAAATTTCCATC 59.117 33.333 0.00 0.00 36.52 3.51
2657 2748 7.665145 CACACTTCCCCAAATTAAAATTTCCAT 59.335 33.333 0.00 0.00 36.52 3.41
2658 2749 6.995091 CACACTTCCCCAAATTAAAATTTCCA 59.005 34.615 0.00 0.00 36.52 3.53
2659 2750 7.220740 TCACACTTCCCCAAATTAAAATTTCC 58.779 34.615 0.00 0.00 36.52 3.13
2670 2761 9.983024 TCTATTAAATTATCACACTTCCCCAAA 57.017 29.630 0.00 0.00 0.00 3.28
2758 2849 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2759 2850 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2760 2851 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2761 2852 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
2762 2853 5.869344 TGATGACAAGTATTTTCAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
2763 2854 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
2764 2855 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
2765 2856 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
2766 2857 9.897744 TCATTTTGATGACAAGTATTTTCAGAC 57.102 29.630 0.00 0.00 37.32 3.51
2812 2903 9.623350 GGGACGTATCTAGATGTATTTTAGTTC 57.377 37.037 15.79 2.83 0.00 3.01
2813 2904 8.583296 GGGGACGTATCTAGATGTATTTTAGTT 58.417 37.037 15.79 0.00 0.00 2.24
2814 2905 7.949006 AGGGGACGTATCTAGATGTATTTTAGT 59.051 37.037 15.79 3.72 0.00 2.24
2815 2906 8.350852 AGGGGACGTATCTAGATGTATTTTAG 57.649 38.462 15.79 0.78 0.00 1.85
2816 2907 8.716674 AAGGGGACGTATCTAGATGTATTTTA 57.283 34.615 15.79 0.00 0.00 1.52
2817 2908 7.613551 AAGGGGACGTATCTAGATGTATTTT 57.386 36.000 15.79 0.00 0.00 1.82
2818 2909 7.613551 AAAGGGGACGTATCTAGATGTATTT 57.386 36.000 15.79 3.36 0.00 1.40
2819 2910 8.896722 ATAAAGGGGACGTATCTAGATGTATT 57.103 34.615 15.79 0.00 0.00 1.89
2820 2911 7.560626 GGATAAAGGGGACGTATCTAGATGTAT 59.439 40.741 15.79 0.00 34.50 2.29
2821 2912 6.888632 GGATAAAGGGGACGTATCTAGATGTA 59.111 42.308 15.79 0.00 34.50 2.29
2822 2913 5.715753 GGATAAAGGGGACGTATCTAGATGT 59.284 44.000 15.79 5.44 34.50 3.06
2823 2914 5.715279 TGGATAAAGGGGACGTATCTAGATG 59.285 44.000 15.79 1.92 34.50 2.90
2824 2915 5.900437 TGGATAAAGGGGACGTATCTAGAT 58.100 41.667 10.73 10.73 34.50 1.98
2825 2916 5.329191 TGGATAAAGGGGACGTATCTAGA 57.671 43.478 0.00 0.00 34.50 2.43
2826 2917 6.607004 AATGGATAAAGGGGACGTATCTAG 57.393 41.667 0.00 0.00 34.50 2.43
2827 2918 7.071447 TCAAAATGGATAAAGGGGACGTATCTA 59.929 37.037 0.00 0.00 34.50 1.98
2828 2919 5.906772 AAATGGATAAAGGGGACGTATCT 57.093 39.130 0.00 0.00 34.50 1.98
2829 2920 6.059484 TCAAAATGGATAAAGGGGACGTATC 58.941 40.000 0.00 0.00 33.77 2.24
2830 2921 6.008696 TCAAAATGGATAAAGGGGACGTAT 57.991 37.500 0.00 0.00 0.00 3.06
2831 2922 5.438698 TCAAAATGGATAAAGGGGACGTA 57.561 39.130 0.00 0.00 0.00 3.57
2832 2923 4.310022 TCAAAATGGATAAAGGGGACGT 57.690 40.909 0.00 0.00 0.00 4.34
2833 2924 4.887071 TCATCAAAATGGATAAAGGGGACG 59.113 41.667 0.00 0.00 33.42 4.79
2834 2925 5.656416 TGTCATCAAAATGGATAAAGGGGAC 59.344 40.000 0.00 0.00 33.42 4.46
2835 2926 5.836705 TGTCATCAAAATGGATAAAGGGGA 58.163 37.500 0.00 0.00 33.42 4.81
2836 2927 6.155049 ACTTGTCATCAAAATGGATAAAGGGG 59.845 38.462 0.00 0.00 33.42 4.79
2837 2928 7.174107 ACTTGTCATCAAAATGGATAAAGGG 57.826 36.000 0.00 0.00 33.42 3.95
2843 2934 8.472413 CCAGAAATACTTGTCATCAAAATGGAT 58.528 33.333 0.00 0.00 33.42 3.41
2844 2935 7.669304 TCCAGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
2845 2936 7.756722 GTCCAGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
2846 2937 8.298854 TGTCCAGAAATACTTGTCATCAAAATG 58.701 33.333 0.00 0.00 32.87 2.32
2847 2938 8.408043 TGTCCAGAAATACTTGTCATCAAAAT 57.592 30.769 0.00 0.00 32.87 1.82
2848 2939 7.719193 TCTGTCCAGAAATACTTGTCATCAAAA 59.281 33.333 0.00 0.00 33.91 2.44
2849 2940 7.223584 TCTGTCCAGAAATACTTGTCATCAAA 58.776 34.615 0.00 0.00 33.91 2.69
2850 2941 6.768483 TCTGTCCAGAAATACTTGTCATCAA 58.232 36.000 0.00 0.00 33.91 2.57
2851 2942 6.358974 TCTGTCCAGAAATACTTGTCATCA 57.641 37.500 0.00 0.00 33.91 3.07
2852 2943 5.814705 CCTCTGTCCAGAAATACTTGTCATC 59.185 44.000 0.00 0.00 36.94 2.92
2853 2944 5.338708 CCCTCTGTCCAGAAATACTTGTCAT 60.339 44.000 0.00 0.00 36.94 3.06
2854 2945 4.020218 CCCTCTGTCCAGAAATACTTGTCA 60.020 45.833 0.00 0.00 36.94 3.58
2855 2946 4.223032 TCCCTCTGTCCAGAAATACTTGTC 59.777 45.833 0.00 0.00 36.94 3.18
2856 2947 4.168101 TCCCTCTGTCCAGAAATACTTGT 58.832 43.478 0.00 0.00 36.94 3.16
2857 2948 4.223923 ACTCCCTCTGTCCAGAAATACTTG 59.776 45.833 0.00 0.00 36.94 3.16
2858 2949 4.430441 ACTCCCTCTGTCCAGAAATACTT 58.570 43.478 0.00 0.00 36.94 2.24
2859 2950 4.067944 ACTCCCTCTGTCCAGAAATACT 57.932 45.455 0.00 0.00 36.94 2.12
2860 2951 5.934402 TTACTCCCTCTGTCCAGAAATAC 57.066 43.478 0.00 0.00 36.94 1.89
2861 2952 7.037586 ACAAATTACTCCCTCTGTCCAGAAATA 60.038 37.037 0.00 0.00 36.94 1.40
2862 2953 6.183347 CAAATTACTCCCTCTGTCCAGAAAT 58.817 40.000 0.00 0.00 36.94 2.17
2863 2954 5.073144 ACAAATTACTCCCTCTGTCCAGAAA 59.927 40.000 0.00 0.00 36.94 2.52
2864 2955 4.597507 ACAAATTACTCCCTCTGTCCAGAA 59.402 41.667 0.00 0.00 36.94 3.02
2865 2956 4.168101 ACAAATTACTCCCTCTGTCCAGA 58.832 43.478 0.00 0.00 35.85 3.86
2866 2957 4.559862 ACAAATTACTCCCTCTGTCCAG 57.440 45.455 0.00 0.00 0.00 3.86
2867 2958 6.183360 GCTATACAAATTACTCCCTCTGTCCA 60.183 42.308 0.00 0.00 0.00 4.02
2868 2959 6.224584 GCTATACAAATTACTCCCTCTGTCC 58.775 44.000 0.00 0.00 0.00 4.02
2869 2960 6.224584 GGCTATACAAATTACTCCCTCTGTC 58.775 44.000 0.00 0.00 0.00 3.51
2870 2961 5.221461 CGGCTATACAAATTACTCCCTCTGT 60.221 44.000 0.00 0.00 0.00 3.41
2871 2962 5.010719 TCGGCTATACAAATTACTCCCTCTG 59.989 44.000 0.00 0.00 0.00 3.35
2872 2963 5.145564 TCGGCTATACAAATTACTCCCTCT 58.854 41.667 0.00 0.00 0.00 3.69
2873 2964 5.464030 TCGGCTATACAAATTACTCCCTC 57.536 43.478 0.00 0.00 0.00 4.30
2874 2965 5.280011 CCATCGGCTATACAAATTACTCCCT 60.280 44.000 0.00 0.00 0.00 4.20
2875 2966 4.935808 CCATCGGCTATACAAATTACTCCC 59.064 45.833 0.00 0.00 0.00 4.30
2876 2967 4.935808 CCCATCGGCTATACAAATTACTCC 59.064 45.833 0.00 0.00 0.00 3.85
2877 2968 4.935808 CCCCATCGGCTATACAAATTACTC 59.064 45.833 0.00 0.00 0.00 2.59
2878 2969 4.349930 ACCCCATCGGCTATACAAATTACT 59.650 41.667 0.00 0.00 33.26 2.24
2879 2970 4.648651 ACCCCATCGGCTATACAAATTAC 58.351 43.478 0.00 0.00 33.26 1.89
2880 2971 4.986054 ACCCCATCGGCTATACAAATTA 57.014 40.909 0.00 0.00 33.26 1.40
2881 2972 3.876309 ACCCCATCGGCTATACAAATT 57.124 42.857 0.00 0.00 33.26 1.82
2893 2984 2.290641 GCTAGCATAACAAACCCCATCG 59.709 50.000 10.63 0.00 0.00 3.84
2928 3020 5.722021 AATTGTTACTTGTCATGTTCCCC 57.278 39.130 0.00 0.00 0.00 4.81
2944 3036 5.069119 GGGTGAGAAGTTCCTTCAAATTGTT 59.931 40.000 0.00 0.00 42.37 2.83
2946 3038 4.584325 TGGGTGAGAAGTTCCTTCAAATTG 59.416 41.667 0.00 0.00 42.37 2.32
2952 3044 3.493767 AAGTGGGTGAGAAGTTCCTTC 57.506 47.619 0.00 0.00 40.45 3.46
3003 3095 7.514721 TCACAGATCAAAAAGTAAGGGTAGTT 58.485 34.615 0.00 0.00 0.00 2.24
3046 3153 3.045634 TCCATAAGGGTCCATACCTGTG 58.954 50.000 0.00 0.00 45.95 3.66
3047 3154 3.431411 TCCATAAGGGTCCATACCTGT 57.569 47.619 0.00 0.00 45.95 4.00
3057 3164 3.454812 GTGTAGTGGTGATCCATAAGGGT 59.545 47.826 0.00 0.00 46.20 4.34
3165 3272 1.468054 GCCGCCAAACTGAAATAGCTG 60.468 52.381 0.00 0.00 0.00 4.24
3268 3375 1.810151 CCACATACACCAAAACCGGAG 59.190 52.381 9.46 0.00 0.00 4.63
3312 3419 4.814771 ACTTAAATACTTACAGATGCCGGC 59.185 41.667 22.73 22.73 0.00 6.13
3367 3474 6.262049 TGTGCTACATGTTCTTGCTTCTAAAA 59.738 34.615 2.30 0.00 0.00 1.52
3368 3475 5.762711 TGTGCTACATGTTCTTGCTTCTAAA 59.237 36.000 2.30 0.00 0.00 1.85
3369 3476 5.304778 TGTGCTACATGTTCTTGCTTCTAA 58.695 37.500 2.30 0.00 0.00 2.10
3370 3477 4.893608 TGTGCTACATGTTCTTGCTTCTA 58.106 39.130 2.30 0.00 0.00 2.10
3371 3478 3.743521 TGTGCTACATGTTCTTGCTTCT 58.256 40.909 2.30 0.00 0.00 2.85
3372 3479 4.691860 ATGTGCTACATGTTCTTGCTTC 57.308 40.909 2.30 3.38 37.45 3.86
3400 3507 8.219178 TCCCACAGAAGTTAAATAAAAGGTACA 58.781 33.333 0.00 0.00 0.00 2.90
3413 3520 8.934023 ATAAGTGAAAATTCCCACAGAAGTTA 57.066 30.769 11.27 3.52 41.72 2.24
3420 3527 6.014755 TGCATCAATAAGTGAAAATTCCCACA 60.015 34.615 11.27 0.00 40.50 4.17
3452 3559 9.790344 GACTTATATCTTGGTACAGAGGTAGTA 57.210 37.037 0.00 0.00 42.39 1.82
3453 3560 7.444792 CGACTTATATCTTGGTACAGAGGTAGT 59.555 40.741 0.00 0.00 42.39 2.73
3454 3561 7.444792 ACGACTTATATCTTGGTACAGAGGTAG 59.555 40.741 0.00 0.00 42.39 3.18
3455 3562 7.285566 ACGACTTATATCTTGGTACAGAGGTA 58.714 38.462 0.00 0.00 42.39 3.08
3456 3563 6.127793 ACGACTTATATCTTGGTACAGAGGT 58.872 40.000 0.00 0.00 42.39 3.85
3457 3564 6.636562 ACGACTTATATCTTGGTACAGAGG 57.363 41.667 0.00 0.00 42.39 3.69
3458 3565 8.928270 AAAACGACTTATATCTTGGTACAGAG 57.072 34.615 0.00 0.00 42.39 3.35
3459 3566 9.146984 CAAAAACGACTTATATCTTGGTACAGA 57.853 33.333 0.00 0.00 42.39 3.41
3460 3567 8.932791 ACAAAAACGACTTATATCTTGGTACAG 58.067 33.333 0.00 0.00 42.39 2.74
3461 3568 8.836268 ACAAAAACGACTTATATCTTGGTACA 57.164 30.769 0.00 0.00 0.00 2.90
3463 3570 9.590451 CCTACAAAAACGACTTATATCTTGGTA 57.410 33.333 0.00 0.00 0.00 3.25
3464 3571 7.065443 GCCTACAAAAACGACTTATATCTTGGT 59.935 37.037 0.00 0.00 0.00 3.67
3465 3572 7.280205 AGCCTACAAAAACGACTTATATCTTGG 59.720 37.037 0.00 0.00 0.00 3.61
3466 3573 8.116753 CAGCCTACAAAAACGACTTATATCTTG 58.883 37.037 0.00 0.00 0.00 3.02
3467 3574 7.822822 ACAGCCTACAAAAACGACTTATATCTT 59.177 33.333 0.00 0.00 0.00 2.40
3468 3575 7.328737 ACAGCCTACAAAAACGACTTATATCT 58.671 34.615 0.00 0.00 0.00 1.98
3469 3576 7.491696 AGACAGCCTACAAAAACGACTTATATC 59.508 37.037 0.00 0.00 0.00 1.63
3470 3577 7.328737 AGACAGCCTACAAAAACGACTTATAT 58.671 34.615 0.00 0.00 0.00 0.86
3471 3578 6.694447 AGACAGCCTACAAAAACGACTTATA 58.306 36.000 0.00 0.00 0.00 0.98
3472 3579 5.548406 AGACAGCCTACAAAAACGACTTAT 58.452 37.500 0.00 0.00 0.00 1.73
3473 3580 4.952460 AGACAGCCTACAAAAACGACTTA 58.048 39.130 0.00 0.00 0.00 2.24
3474 3581 3.805207 AGACAGCCTACAAAAACGACTT 58.195 40.909 0.00 0.00 0.00 3.01
3475 3582 3.470645 AGACAGCCTACAAAAACGACT 57.529 42.857 0.00 0.00 0.00 4.18
3476 3583 5.857822 ATAAGACAGCCTACAAAAACGAC 57.142 39.130 0.00 0.00 0.00 4.34
3477 3584 8.556213 AAATATAAGACAGCCTACAAAAACGA 57.444 30.769 0.00 0.00 0.00 3.85
3478 3585 9.061610 CAAAATATAAGACAGCCTACAAAAACG 57.938 33.333 0.00 0.00 0.00 3.60
3483 3590 9.256477 CGTATCAAAATATAAGACAGCCTACAA 57.744 33.333 0.00 0.00 0.00 2.41
3484 3591 7.870954 CCGTATCAAAATATAAGACAGCCTACA 59.129 37.037 0.00 0.00 0.00 2.74
3485 3592 8.086522 TCCGTATCAAAATATAAGACAGCCTAC 58.913 37.037 0.00 0.00 0.00 3.18
3486 3593 8.185506 TCCGTATCAAAATATAAGACAGCCTA 57.814 34.615 0.00 0.00 0.00 3.93
3487 3594 7.015292 TCTCCGTATCAAAATATAAGACAGCCT 59.985 37.037 0.00 0.00 0.00 4.58
3488 3595 7.152645 TCTCCGTATCAAAATATAAGACAGCC 58.847 38.462 0.00 0.00 0.00 4.85
3489 3596 8.082852 TCTCTCCGTATCAAAATATAAGACAGC 58.917 37.037 0.00 0.00 0.00 4.40
3490 3597 9.619316 CTCTCTCCGTATCAAAATATAAGACAG 57.381 37.037 0.00 0.00 0.00 3.51
3491 3598 9.132923 ACTCTCTCCGTATCAAAATATAAGACA 57.867 33.333 0.00 0.00 0.00 3.41
3503 3610 9.788889 TCTTTACATTATACTCTCTCCGTATCA 57.211 33.333 0.00 0.00 0.00 2.15
3566 3674 8.352201 CACGGACAACCATAAAATTATCATGAT 58.648 33.333 13.81 13.81 35.59 2.45
3567 3675 7.338196 ACACGGACAACCATAAAATTATCATGA 59.662 33.333 0.00 0.00 35.59 3.07
3577 3685 3.142951 CCAGAACACGGACAACCATAAA 58.857 45.455 0.00 0.00 35.59 1.40
3595 3703 5.016051 TGAAAGAATAGAGTGCTAGCCAG 57.984 43.478 13.29 0.00 0.00 4.85
3663 3772 3.456280 GAGCAGTATCTGAGGCAAAGAG 58.544 50.000 0.66 0.00 32.44 2.85
3801 3910 1.577922 CACTGCTGCACTTGCGATT 59.422 52.632 0.00 0.00 45.83 3.34
4006 4116 6.371825 AGGAAAATAGAAGCGTGTTAAAGAGG 59.628 38.462 0.00 0.00 0.00 3.69
4009 4119 8.797266 AAAAGGAAAATAGAAGCGTGTTAAAG 57.203 30.769 0.00 0.00 0.00 1.85
4018 4128 6.151144 TCACCTGCTAAAAGGAAAATAGAAGC 59.849 38.462 0.00 0.00 40.02 3.86
4024 4134 4.219288 CAGCTCACCTGCTAAAAGGAAAAT 59.781 41.667 0.00 0.00 41.98 1.82
4095 4205 2.997315 TCCACTGCCTGGTCCTCG 60.997 66.667 0.00 0.00 41.52 4.63
4189 4299 6.710744 ACACAGTGAAATTCCCTTAACTACAG 59.289 38.462 7.81 0.00 0.00 2.74
4255 4367 1.771854 TGGCAGAAAGTTCACCAGGTA 59.228 47.619 0.00 0.00 32.74 3.08
4470 4741 0.028505 CGAGCTTCGCCCATGAAATG 59.971 55.000 0.00 0.00 37.25 2.32
4506 4777 6.769134 TTCCAGAATCATACGACTAACTGA 57.231 37.500 0.00 0.00 0.00 3.41
4516 4787 7.050377 TCTCAGTCCAAATTCCAGAATCATAC 58.950 38.462 0.00 0.00 0.00 2.39
4550 4821 4.503643 CCAAACAGCCCAATGATTTGAACT 60.504 41.667 0.00 0.00 34.60 3.01
4593 4864 1.168714 CTTCTGGCAACCTTAGGTGC 58.831 55.000 3.99 10.78 35.34 5.01
4629 4900 5.297547 ACAGCGTCAATTAATATGGATCGT 58.702 37.500 0.00 0.00 0.00 3.73
4652 4923 7.339207 CGATCAGTACGAAAGTTGTACAAAAA 58.661 34.615 10.51 0.00 46.40 1.94
4672 4943 3.170717 AGTTTGTTACTCCCTCCGATCA 58.829 45.455 0.00 0.00 28.23 2.92
4923 5676 1.026182 TGGAGGCAAATGCTACTGCG 61.026 55.000 5.25 0.00 43.34 5.18
4925 5678 1.679680 CCATGGAGGCAAATGCTACTG 59.320 52.381 5.56 0.00 41.70 2.74
4999 5752 9.738832 GTGTAACCTTTGTTATGTGTTATGTTT 57.261 29.630 0.00 0.00 39.08 2.83
5000 5753 8.904834 TGTGTAACCTTTGTTATGTGTTATGTT 58.095 29.630 0.00 0.00 39.08 2.71
5001 5754 8.453238 TGTGTAACCTTTGTTATGTGTTATGT 57.547 30.769 0.00 0.00 39.08 2.29
5002 5755 8.564574 ACTGTGTAACCTTTGTTATGTGTTATG 58.435 33.333 0.00 0.00 39.08 1.90
5003 5756 8.564574 CACTGTGTAACCTTTGTTATGTGTTAT 58.435 33.333 0.00 0.00 39.08 1.89
5004 5757 7.467539 GCACTGTGTAACCTTTGTTATGTGTTA 60.468 37.037 9.86 0.00 39.08 2.41
5005 5758 6.679392 GCACTGTGTAACCTTTGTTATGTGTT 60.679 38.462 9.86 0.00 39.08 3.32
5011 5764 5.302360 CCTAGCACTGTGTAACCTTTGTTA 58.698 41.667 9.86 0.00 35.87 2.41
5012 5765 4.134563 CCTAGCACTGTGTAACCTTTGTT 58.865 43.478 9.86 0.00 38.52 2.83
5027 5780 1.147153 GTGAGATGGGGCCTAGCAC 59.853 63.158 8.18 0.87 0.00 4.40
5074 7386 4.481368 AATGGTACTAGGAACGCATTCA 57.519 40.909 0.00 0.00 36.46 2.57
5081 7393 6.002082 AGTTTGGACAAATGGTACTAGGAAC 58.998 40.000 0.34 0.00 32.36 3.62
5131 7448 5.701224 AGGTTGAATAGGGTGAAAGTTCAA 58.299 37.500 0.00 0.00 39.21 2.69
5139 7456 5.311121 TCTGGTAAAAGGTTGAATAGGGTGA 59.689 40.000 0.00 0.00 0.00 4.02
5143 7460 5.816682 AGGTCTGGTAAAAGGTTGAATAGG 58.183 41.667 0.00 0.00 0.00 2.57
5145 7462 7.291566 TCAAAGGTCTGGTAAAAGGTTGAATA 58.708 34.615 0.00 0.00 0.00 1.75
5154 7471 6.887545 TGAGAAAACTCAAAGGTCTGGTAAAA 59.112 34.615 0.00 0.00 0.00 1.52
5190 7507 2.200081 ACCAAGGAGTGCCATGAGTAT 58.800 47.619 0.00 0.00 34.85 2.12
5235 7552 1.933853 GGCATCTCGACGCATTTTACT 59.066 47.619 0.00 0.00 0.00 2.24
5274 7591 1.610522 GAGCTTCAGAAGGCTTTGCAA 59.389 47.619 12.30 0.00 39.05 4.08
5304 7621 5.136828 TGGGTTCACATTGTTTGTAGTGAT 58.863 37.500 0.00 0.00 40.32 3.06
5310 7627 3.096092 ACACTGGGTTCACATTGTTTGT 58.904 40.909 0.00 0.00 39.91 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.