Multiple sequence alignment - TraesCS1B01G290800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G290800 chr1B 100.000 4972 0 0 1 4972 508399749 508394778 0.000000e+00 9182
1 TraesCS1B01G290800 chr1B 95.556 90 2 2 4269 4357 508395393 508395481 5.190000e-30 143
2 TraesCS1B01G290800 chr1B 89.130 92 6 2 4270 4359 21368749 21368838 1.460000e-20 111
3 TraesCS1B01G290800 chr1A 93.181 1877 74 26 897 2744 480432572 480430721 0.000000e+00 2708
4 TraesCS1B01G290800 chr1A 91.476 1572 84 28 2741 4270 480430641 480429078 0.000000e+00 2115
5 TraesCS1B01G290800 chr1A 87.480 631 36 23 4368 4972 480429063 480428450 0.000000e+00 688
6 TraesCS1B01G290800 chr1A 92.793 111 7 1 668 778 480432690 480432581 5.150000e-35 159
7 TraesCS1B01G290800 chr1D 94.269 1518 49 18 897 2397 379437074 379435578 0.000000e+00 2287
8 TraesCS1B01G290800 chr1D 92.841 866 37 12 3427 4270 379434366 379433504 0.000000e+00 1232
9 TraesCS1B01G290800 chr1D 83.544 632 66 29 4355 4972 379433506 379432899 1.560000e-154 556
10 TraesCS1B01G290800 chr1D 89.119 386 31 6 2964 3344 379434749 379434370 2.100000e-128 470
11 TraesCS1B01G290800 chr1D 83.832 501 65 9 286 778 379437575 379437083 3.510000e-126 462
12 TraesCS1B01G290800 chr1D 90.385 260 21 2 2408 2667 379435304 379435049 6.170000e-89 339
13 TraesCS1B01G290800 chr1D 87.259 259 23 4 2674 2923 379435005 379434748 2.260000e-73 287
14 TraesCS1B01G290800 chr1D 85.115 262 31 3 4 257 379438372 379438111 1.370000e-65 261
15 TraesCS1B01G290800 chr5B 81.351 740 88 27 3345 4060 325072404 325073117 1.560000e-154 556
16 TraesCS1B01G290800 chr5B 90.217 92 4 4 4267 4357 650959615 650959528 1.130000e-21 115
17 TraesCS1B01G290800 chr7A 78.784 839 109 41 3345 4147 648141462 648140657 2.670000e-137 499
18 TraesCS1B01G290800 chr5D 81.855 496 71 16 3349 3842 286191903 286192381 2.790000e-107 399
19 TraesCS1B01G290800 chr5D 80.275 436 56 16 3636 4049 286192383 286192810 8.090000e-78 302
20 TraesCS1B01G290800 chr5D 83.673 196 23 4 460 646 296366611 296366806 5.120000e-40 176
21 TraesCS1B01G290800 chr7B 77.932 648 80 33 3531 4147 612309757 612309142 3.680000e-91 346
22 TraesCS1B01G290800 chr7B 81.295 278 34 8 386 646 83026996 83026720 5.040000e-50 209
23 TraesCS1B01G290800 chr7B 90.741 108 9 1 773 879 555654399 555654506 5.190000e-30 143
24 TraesCS1B01G290800 chr5A 77.024 531 74 22 3636 4130 378513678 378514196 1.370000e-65 261
25 TraesCS1B01G290800 chr5A 87.425 167 16 1 465 626 703414147 703413981 2.360000e-43 187
26 TraesCS1B01G290800 chr5A 86.034 179 16 5 460 629 554331751 554331929 3.060000e-42 183
27 TraesCS1B01G290800 chr6A 87.135 171 15 3 460 623 5126711 5126881 2.360000e-43 187
28 TraesCS1B01G290800 chr4D 87.135 171 14 4 460 623 421546394 421546563 2.360000e-43 187
29 TraesCS1B01G290800 chr4D 90.805 87 3 4 4269 4354 439297257 439297339 1.460000e-20 111
30 TraesCS1B01G290800 chr6D 79.026 267 42 9 369 626 189414570 189414309 2.380000e-38 171
31 TraesCS1B01G290800 chr3B 78.327 263 48 4 369 626 637661044 637660786 1.430000e-35 161
32 TraesCS1B01G290800 chr2D 91.071 112 7 3 771 880 572729023 572728913 1.120000e-31 148
33 TraesCS1B01G290800 chr2B 90.351 114 10 1 771 883 711219782 711219669 1.120000e-31 148
34 TraesCS1B01G290800 chr2B 90.909 110 9 1 774 882 217413935 217413826 4.010000e-31 147
35 TraesCS1B01G290800 chr4A 90.909 110 9 1 771 879 1725404 1725513 4.010000e-31 147
36 TraesCS1B01G290800 chr4A 90.090 111 10 1 774 883 617363045 617362935 5.190000e-30 143
37 TraesCS1B01G290800 chr4A 90.000 110 10 1 773 881 117283186 117283295 1.870000e-29 141
38 TraesCS1B01G290800 chr2A 90.741 108 9 1 773 879 635580060 635579953 5.190000e-30 143
39 TraesCS1B01G290800 chr2A 90.722 97 5 2 4265 4361 51586788 51586880 5.230000e-25 126
40 TraesCS1B01G290800 chr2A 91.111 90 4 2 4268 4357 51586877 51586792 8.740000e-23 119
41 TraesCS1B01G290800 chr4B 88.696 115 12 1 766 879 40784479 40784365 6.710000e-29 139
42 TraesCS1B01G290800 chr3D 92.222 90 2 4 4269 4357 225865078 225865163 6.760000e-24 122
43 TraesCS1B01G290800 chr3D 89.691 97 4 5 4265 4360 225865166 225865075 8.740000e-23 119
44 TraesCS1B01G290800 chr3A 88.182 110 4 9 4258 4362 140802788 140802683 6.760000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G290800 chr1B 508394778 508399749 4971 True 9182.00 9182 100.0000 1 4972 1 chr1B.!!$R1 4971
1 TraesCS1B01G290800 chr1A 480428450 480432690 4240 True 1417.50 2708 91.2325 668 4972 4 chr1A.!!$R1 4304
2 TraesCS1B01G290800 chr1D 379432899 379438372 5473 True 736.75 2287 88.2955 4 4972 8 chr1D.!!$R1 4968
3 TraesCS1B01G290800 chr5B 325072404 325073117 713 False 556.00 556 81.3510 3345 4060 1 chr5B.!!$F1 715
4 TraesCS1B01G290800 chr7A 648140657 648141462 805 True 499.00 499 78.7840 3345 4147 1 chr7A.!!$R1 802
5 TraesCS1B01G290800 chr5D 286191903 286192810 907 False 350.50 399 81.0650 3349 4049 2 chr5D.!!$F2 700
6 TraesCS1B01G290800 chr7B 612309142 612309757 615 True 346.00 346 77.9320 3531 4147 1 chr7B.!!$R2 616
7 TraesCS1B01G290800 chr5A 378513678 378514196 518 False 261.00 261 77.0240 3636 4130 1 chr5A.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 977 0.027586 GTGTGTGGTCTTTGCACGAC 59.972 55.0 6.76 6.76 36.04 4.34 F
871 1402 0.108992 CGACAGGAATTCCGAACGGA 60.109 55.0 18.82 12.04 43.52 4.69 F
876 1407 0.179081 GGAATTCCGAACGGAGGGAG 60.179 60.0 9.17 0.00 46.06 4.30 F
1551 2092 0.310543 TTGCTAAAGTTGCACGGCTG 59.689 50.0 0.00 0.00 40.40 4.85 F
1561 2102 1.164411 TGCACGGCTGTAAATTGAGG 58.836 50.0 0.00 0.00 0.00 3.86 F
2190 2735 2.237392 AGCCACCAAGACTTATCACCTC 59.763 50.0 0.00 0.00 0.00 3.85 F
3634 4642 1.097547 GGTATCAGCGGTTGCAGCAT 61.098 55.0 2.05 0.00 46.23 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2709 0.036732 TAAGTCTTGGTGGCTGGCAG 59.963 55.000 10.94 10.94 0.00 4.85 R
2286 2843 0.895100 TTGCTGGAACTGGGTCATGC 60.895 55.000 0.00 0.00 0.00 4.06 R
2505 3325 1.279496 TGGTGCATAGCTCTCAAGGT 58.721 50.000 0.00 0.00 37.01 3.50 R
2947 3905 2.043248 TACTCCCTCCGCTCCACC 60.043 66.667 0.00 0.00 0.00 4.61 R
2953 3941 4.933505 AAATAGTTACTACTCCCTCCGC 57.066 45.455 0.00 0.00 35.78 5.54 R
3944 5181 2.299993 TGAAGCTTCTATCACCAGCG 57.700 50.000 26.09 0.00 38.66 5.18 R
4452 5721 0.523072 CGTCCAAACAGCCTTCATGG 59.477 55.000 0.00 0.00 39.35 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.701290 ACCACTAGATGTTACAGAAAGTTGC 59.299 40.000 0.00 0.00 0.00 4.17
62 63 6.893958 TCGAGTCATGATTTTCTTCTAAGC 57.106 37.500 0.00 0.00 0.00 3.09
64 65 6.873605 TCGAGTCATGATTTTCTTCTAAGCAA 59.126 34.615 0.00 0.00 0.00 3.91
71 73 5.529430 TGATTTTCTTCTAAGCAACCGTTGA 59.471 36.000 15.63 0.00 0.00 3.18
82 84 4.072131 AGCAACCGTTGACTGATTGTAAT 58.928 39.130 15.63 0.00 0.00 1.89
110 112 9.999009 GTTTGCTACTATTGTAATAAAGTTCCC 57.001 33.333 0.00 0.00 0.00 3.97
120 122 9.897040 ATTGTAATAAAGTTCCCCATATTGGAT 57.103 29.630 0.00 0.00 40.96 3.41
122 124 6.670695 AATAAAGTTCCCCATATTGGATGC 57.329 37.500 0.00 0.00 40.96 3.91
229 238 8.612619 CAATCATAAAATAGCTTACCGTTCTGT 58.387 33.333 0.00 0.00 0.00 3.41
236 245 3.508762 AGCTTACCGTTCTGTTACATCG 58.491 45.455 0.00 0.00 0.00 3.84
242 251 3.985925 ACCGTTCTGTTACATCGTCTTTC 59.014 43.478 0.00 0.00 0.00 2.62
257 266 3.312421 CGTCTTTCGGGTTGCAATATCAT 59.688 43.478 0.59 0.00 35.71 2.45
259 268 5.036737 GTCTTTCGGGTTGCAATATCATTG 58.963 41.667 0.59 0.00 0.00 2.82
265 286 5.056480 CGGGTTGCAATATCATTGTCTAGA 58.944 41.667 0.59 0.00 0.00 2.43
290 311 6.617371 ACCATTTACTTCATGATCCTCTAGGT 59.383 38.462 0.00 0.00 36.34 3.08
294 315 1.722034 TCATGATCCTCTAGGTGCCC 58.278 55.000 0.00 0.00 36.34 5.36
295 316 0.689623 CATGATCCTCTAGGTGCCCC 59.310 60.000 0.00 0.00 36.34 5.80
296 317 0.268869 ATGATCCTCTAGGTGCCCCA 59.731 55.000 0.00 0.00 36.34 4.96
307 823 2.122167 GTGCCCCACAAACGGACAA 61.122 57.895 0.00 0.00 34.08 3.18
313 829 2.222886 CCCACAAACGGACAACACATA 58.777 47.619 0.00 0.00 0.00 2.29
317 833 4.278858 CACAAACGGACAACACATAACAG 58.721 43.478 0.00 0.00 0.00 3.16
318 834 3.942748 ACAAACGGACAACACATAACAGT 59.057 39.130 0.00 0.00 0.00 3.55
332 848 5.122239 CACATAACAGTAATGTGGTGAGTGG 59.878 44.000 14.24 0.99 46.78 4.00
339 857 1.165907 ATGTGGTGAGTGGCGTTGTG 61.166 55.000 0.00 0.00 0.00 3.33
347 865 0.039437 AGTGGCGTTGTGTCTACTCG 60.039 55.000 0.00 0.00 0.00 4.18
354 872 1.192534 GTTGTGTCTACTCGTGCTTGC 59.807 52.381 0.00 0.00 0.00 4.01
358 876 1.002366 GTCTACTCGTGCTTGCCATG 58.998 55.000 0.00 0.00 0.00 3.66
368 886 1.959085 CTTGCCATGACCGCAACTT 59.041 52.632 4.02 0.00 41.17 2.66
371 889 1.106351 TGCCATGACCGCAACTTGTT 61.106 50.000 0.00 0.00 32.05 2.83
376 894 3.443037 CATGACCGCAACTTGTTTTCAA 58.557 40.909 0.00 0.00 38.21 2.69
404 922 3.146618 TCTTTTGATCTACGCGTCTCC 57.853 47.619 18.63 4.28 0.00 3.71
412 930 0.869068 CTACGCGTCTCCTCATCGAT 59.131 55.000 18.63 0.00 0.00 3.59
415 933 1.736586 GCGTCTCCTCATCGATGGT 59.263 57.895 24.61 0.00 0.00 3.55
420 938 2.693591 GTCTCCTCATCGATGGTGGTTA 59.306 50.000 24.61 15.21 0.00 2.85
428 946 6.189677 TCATCGATGGTGGTTAATGTTTTC 57.810 37.500 24.61 0.00 0.00 2.29
429 947 5.707764 TCATCGATGGTGGTTAATGTTTTCA 59.292 36.000 24.61 0.00 0.00 2.69
432 950 4.562394 CGATGGTGGTTAATGTTTTCATGC 59.438 41.667 0.00 0.00 40.79 4.06
437 955 2.923020 GGTTAATGTTTTCATGCGCTGG 59.077 45.455 9.73 0.00 40.79 4.85
440 958 0.168788 ATGTTTTCATGCGCTGGTCG 59.831 50.000 9.73 0.00 39.30 4.79
442 960 0.725784 GTTTTCATGCGCTGGTCGTG 60.726 55.000 9.73 0.00 41.07 4.35
449 967 3.036084 CGCTGGTCGTGTGTGGTC 61.036 66.667 0.00 0.00 0.00 4.02
459 977 0.027586 GTGTGTGGTCTTTGCACGAC 59.972 55.000 6.76 6.76 36.04 4.34
462 980 0.249699 TGTGGTCTTTGCACGACGAT 60.250 50.000 0.00 0.00 32.24 3.73
464 982 1.132640 GGTCTTTGCACGACGATGC 59.867 57.895 0.00 8.65 46.32 3.91
466 984 1.346365 GTCTTTGCACGACGATGCTA 58.654 50.000 18.51 11.38 46.28 3.49
473 991 1.582502 GCACGACGATGCTACTACAAC 59.417 52.381 0.00 0.00 42.62 3.32
481 999 5.985781 ACGATGCTACTACAACAAGTTTTG 58.014 37.500 0.00 0.00 0.00 2.44
483 1001 6.071463 CGATGCTACTACAACAAGTTTTGTC 58.929 40.000 6.68 0.00 44.59 3.18
485 1003 4.271533 TGCTACTACAACAAGTTTTGTCCG 59.728 41.667 6.68 4.02 44.59 4.79
486 1004 4.319261 GCTACTACAACAAGTTTTGTCCGG 60.319 45.833 0.00 0.00 44.59 5.14
505 1023 3.114647 CTTCGGCGAGGGAGAGACG 62.115 68.421 11.60 0.00 0.00 4.18
510 1028 1.357334 GCGAGGGAGAGACGATGAC 59.643 63.158 0.00 0.00 0.00 3.06
511 1029 1.377366 GCGAGGGAGAGACGATGACA 61.377 60.000 0.00 0.00 0.00 3.58
514 1032 0.323816 AGGGAGAGACGATGACAGCA 60.324 55.000 0.00 0.00 0.00 4.41
561 1079 3.620929 TGTAATCGTCGCTAGATGGTC 57.379 47.619 0.00 0.00 34.23 4.02
565 1083 2.616634 TCGTCGCTAGATGGTCTACT 57.383 50.000 0.00 0.00 34.23 2.57
607 1129 3.926527 TCTGATGTTCGTTGCACTATCAC 59.073 43.478 0.00 0.00 0.00 3.06
612 1134 4.487019 TGTTCGTTGCACTATCACGATTA 58.513 39.130 11.04 1.80 32.77 1.75
615 1137 6.073711 TGTTCGTTGCACTATCACGATTAAAA 60.074 34.615 11.04 0.00 32.77 1.52
774 1305 7.069877 AGTACAACAAGTGGATTTACAGGTA 57.930 36.000 0.00 0.00 0.00 3.08
775 1306 6.932960 AGTACAACAAGTGGATTTACAGGTAC 59.067 38.462 0.00 0.00 0.00 3.34
776 1307 5.937111 ACAACAAGTGGATTTACAGGTACT 58.063 37.500 0.00 0.00 43.88 2.73
777 1308 6.362248 ACAACAAGTGGATTTACAGGTACTT 58.638 36.000 0.00 0.00 34.60 2.24
778 1309 6.485648 ACAACAAGTGGATTTACAGGTACTTC 59.514 38.462 0.00 0.00 34.60 3.01
779 1310 5.557866 ACAAGTGGATTTACAGGTACTTCC 58.442 41.667 0.00 0.00 34.60 3.46
781 1312 6.183361 ACAAGTGGATTTACAGGTACTTCCTT 60.183 38.462 0.00 0.00 45.67 3.36
782 1313 6.051179 AGTGGATTTACAGGTACTTCCTTC 57.949 41.667 0.00 3.41 45.67 3.46
783 1314 4.868734 GTGGATTTACAGGTACTTCCTTCG 59.131 45.833 0.00 0.00 45.67 3.79
784 1315 4.529377 TGGATTTACAGGTACTTCCTTCGT 59.471 41.667 0.00 0.00 45.67 3.85
785 1316 5.012354 TGGATTTACAGGTACTTCCTTCGTT 59.988 40.000 0.00 0.00 45.67 3.85
786 1317 5.579904 GGATTTACAGGTACTTCCTTCGTTC 59.420 44.000 0.00 0.00 45.67 3.95
787 1318 2.719426 ACAGGTACTTCCTTCGTTCG 57.281 50.000 0.00 0.00 45.67 3.95
788 1319 1.271656 ACAGGTACTTCCTTCGTTCGG 59.728 52.381 0.00 0.00 45.67 4.30
789 1320 1.542915 CAGGTACTTCCTTCGTTCGGA 59.457 52.381 0.00 0.00 45.67 4.55
790 1321 2.029649 CAGGTACTTCCTTCGTTCGGAA 60.030 50.000 0.00 0.00 45.67 4.30
791 1322 2.830321 AGGTACTTCCTTCGTTCGGAAT 59.170 45.455 0.00 0.00 45.67 3.01
792 1323 3.260128 AGGTACTTCCTTCGTTCGGAATT 59.740 43.478 0.00 2.21 45.67 2.17
793 1324 4.463891 AGGTACTTCCTTCGTTCGGAATTA 59.536 41.667 0.00 1.45 45.67 1.40
794 1325 4.564372 GGTACTTCCTTCGTTCGGAATTAC 59.436 45.833 15.31 15.31 41.88 1.89
795 1326 4.532314 ACTTCCTTCGTTCGGAATTACT 57.468 40.909 0.00 0.00 39.64 2.24
796 1327 4.891260 ACTTCCTTCGTTCGGAATTACTT 58.109 39.130 0.00 0.00 39.64 2.24
797 1328 4.689345 ACTTCCTTCGTTCGGAATTACTTG 59.311 41.667 0.00 0.00 39.64 3.16
798 1329 4.261578 TCCTTCGTTCGGAATTACTTGT 57.738 40.909 0.00 0.00 33.26 3.16
799 1330 4.634199 TCCTTCGTTCGGAATTACTTGTT 58.366 39.130 0.00 0.00 33.26 2.83
800 1331 5.058490 TCCTTCGTTCGGAATTACTTGTTT 58.942 37.500 0.00 0.00 33.26 2.83
801 1332 5.178067 TCCTTCGTTCGGAATTACTTGTTTC 59.822 40.000 0.00 0.00 33.26 2.78
802 1333 4.634349 TCGTTCGGAATTACTTGTTTCG 57.366 40.909 0.00 0.00 0.00 3.46
803 1334 3.429543 TCGTTCGGAATTACTTGTTTCGG 59.570 43.478 0.00 0.00 0.00 4.30
804 1335 3.429543 CGTTCGGAATTACTTGTTTCGGA 59.570 43.478 0.00 0.00 31.74 4.55
805 1336 4.084433 CGTTCGGAATTACTTGTTTCGGAA 60.084 41.667 0.00 0.00 38.24 4.30
806 1337 5.558653 CGTTCGGAATTACTTGTTTCGGAAA 60.559 40.000 0.00 0.00 40.53 3.13
807 1338 6.376177 GTTCGGAATTACTTGTTTCGGAAAT 58.624 36.000 6.43 0.00 40.53 2.17
808 1339 5.933790 TCGGAATTACTTGTTTCGGAAATG 58.066 37.500 6.43 3.45 30.99 2.32
809 1340 5.092781 CGGAATTACTTGTTTCGGAAATGG 58.907 41.667 6.43 3.13 0.00 3.16
810 1341 5.106475 CGGAATTACTTGTTTCGGAAATGGA 60.106 40.000 6.43 0.00 0.00 3.41
811 1342 6.404293 CGGAATTACTTGTTTCGGAAATGGAT 60.404 38.462 6.43 0.00 0.00 3.41
812 1343 6.751888 GGAATTACTTGTTTCGGAAATGGATG 59.248 38.462 6.43 0.23 0.00 3.51
813 1344 6.834168 ATTACTTGTTTCGGAAATGGATGT 57.166 33.333 6.43 5.48 0.00 3.06
814 1345 7.931578 ATTACTTGTTTCGGAAATGGATGTA 57.068 32.000 6.43 4.67 0.00 2.29
815 1346 7.931578 TTACTTGTTTCGGAAATGGATGTAT 57.068 32.000 6.43 0.00 0.00 2.29
816 1347 6.436843 ACTTGTTTCGGAAATGGATGTATC 57.563 37.500 6.43 0.00 0.00 2.24
817 1348 6.180472 ACTTGTTTCGGAAATGGATGTATCT 58.820 36.000 6.43 0.00 0.00 1.98
818 1349 7.335627 ACTTGTTTCGGAAATGGATGTATCTA 58.664 34.615 6.43 0.00 0.00 1.98
819 1350 7.827236 ACTTGTTTCGGAAATGGATGTATCTAA 59.173 33.333 6.43 0.00 0.00 2.10
820 1351 8.568676 TTGTTTCGGAAATGGATGTATCTAAA 57.431 30.769 6.43 0.00 0.00 1.85
821 1352 8.568676 TGTTTCGGAAATGGATGTATCTAAAA 57.431 30.769 6.43 0.00 0.00 1.52
822 1353 8.455682 TGTTTCGGAAATGGATGTATCTAAAAC 58.544 33.333 6.43 0.00 0.00 2.43
823 1354 8.674607 GTTTCGGAAATGGATGTATCTAAAACT 58.325 33.333 6.43 0.00 0.00 2.66
824 1355 9.893634 TTTCGGAAATGGATGTATCTAAAACTA 57.106 29.630 0.00 0.00 0.00 2.24
825 1356 9.893634 TTCGGAAATGGATGTATCTAAAACTAA 57.106 29.630 0.00 0.00 0.00 2.24
826 1357 9.893634 TCGGAAATGGATGTATCTAAAACTAAA 57.106 29.630 0.00 0.00 0.00 1.85
853 1384 8.298030 TGTGTCTATATACATTCATTTCTGCG 57.702 34.615 0.00 0.00 0.00 5.18
854 1385 8.141268 TGTGTCTATATACATTCATTTCTGCGA 58.859 33.333 0.00 0.00 0.00 5.10
855 1386 8.428536 GTGTCTATATACATTCATTTCTGCGAC 58.571 37.037 0.00 0.00 0.00 5.19
856 1387 8.141268 TGTCTATATACATTCATTTCTGCGACA 58.859 33.333 0.00 0.00 0.00 4.35
857 1388 8.642885 GTCTATATACATTCATTTCTGCGACAG 58.357 37.037 0.00 0.00 0.00 3.51
858 1389 6.791887 ATATACATTCATTTCTGCGACAGG 57.208 37.500 6.95 0.00 31.51 4.00
859 1390 3.057969 ACATTCATTTCTGCGACAGGA 57.942 42.857 6.95 0.00 31.51 3.86
860 1391 3.411446 ACATTCATTTCTGCGACAGGAA 58.589 40.909 3.53 3.53 33.09 3.36
861 1392 4.012374 ACATTCATTTCTGCGACAGGAAT 58.988 39.130 7.35 7.35 40.00 3.01
862 1393 4.460382 ACATTCATTTCTGCGACAGGAATT 59.540 37.500 9.74 0.00 37.57 2.17
863 1394 4.685169 TTCATTTCTGCGACAGGAATTC 57.315 40.909 9.74 0.00 37.57 2.17
864 1395 3.009723 TCATTTCTGCGACAGGAATTCC 58.990 45.455 17.31 17.31 37.57 3.01
865 1396 1.438651 TTTCTGCGACAGGAATTCCG 58.561 50.000 18.82 15.41 42.08 4.30
866 1397 0.606096 TTCTGCGACAGGAATTCCGA 59.394 50.000 18.82 5.41 42.08 4.55
867 1398 0.606096 TCTGCGACAGGAATTCCGAA 59.394 50.000 18.82 0.55 42.08 4.30
868 1399 0.721718 CTGCGACAGGAATTCCGAAC 59.278 55.000 18.82 12.24 42.08 3.95
869 1400 1.011968 TGCGACAGGAATTCCGAACG 61.012 55.000 24.56 24.56 42.08 3.95
870 1401 1.693083 GCGACAGGAATTCCGAACGG 61.693 60.000 27.33 16.63 42.08 4.44
871 1402 0.108992 CGACAGGAATTCCGAACGGA 60.109 55.000 18.82 12.04 43.52 4.69
872 1403 1.641577 GACAGGAATTCCGAACGGAG 58.358 55.000 18.82 6.26 46.06 4.63
873 1404 0.249398 ACAGGAATTCCGAACGGAGG 59.751 55.000 18.82 5.15 46.06 4.30
874 1405 0.462047 CAGGAATTCCGAACGGAGGG 60.462 60.000 18.82 0.00 46.06 4.30
875 1406 0.616679 AGGAATTCCGAACGGAGGGA 60.617 55.000 18.82 2.49 46.06 4.20
876 1407 0.179081 GGAATTCCGAACGGAGGGAG 60.179 60.000 9.17 0.00 46.06 4.30
877 1408 0.535797 GAATTCCGAACGGAGGGAGT 59.464 55.000 15.34 1.27 46.06 3.85
945 1478 2.890371 GTATCCCACCGTCGCACT 59.110 61.111 0.00 0.00 0.00 4.40
1091 1629 2.435586 CCTCGTGCAAGCCTCCTG 60.436 66.667 0.00 0.00 0.00 3.86
1098 1636 1.303155 GCAAGCCTCCTGTTGCTCT 60.303 57.895 0.00 0.00 44.68 4.09
1101 1639 0.324285 AAGCCTCCTGTTGCTCTCTG 59.676 55.000 0.00 0.00 36.66 3.35
1489 2027 0.320683 GCAATTGAACCCAACCTGCC 60.321 55.000 10.34 0.00 37.98 4.85
1529 2069 5.972935 TGATTGACTTCCGTATAAGAAGCA 58.027 37.500 11.82 9.00 43.75 3.91
1530 2070 6.042777 TGATTGACTTCCGTATAAGAAGCAG 58.957 40.000 11.82 0.00 43.75 4.24
1549 2090 1.128513 GTTTGCTAAAGTTGCACGGC 58.871 50.000 0.00 0.00 40.40 5.68
1551 2092 0.310543 TTGCTAAAGTTGCACGGCTG 59.689 50.000 0.00 0.00 40.40 4.85
1561 2102 1.164411 TGCACGGCTGTAAATTGAGG 58.836 50.000 0.00 0.00 0.00 3.86
1568 2109 2.352715 GGCTGTAAATTGAGGTGGTTGC 60.353 50.000 0.00 0.00 0.00 4.17
1655 2196 3.620488 GATTGGCTGGTGAGTGGAAATA 58.380 45.455 0.00 0.00 0.00 1.40
1868 2412 2.576191 TCCCCACTTCTTATCCAACCTG 59.424 50.000 0.00 0.00 0.00 4.00
1869 2413 2.308866 CCCCACTTCTTATCCAACCTGT 59.691 50.000 0.00 0.00 0.00 4.00
1882 2426 8.532186 TTATCCAACCTGTATTTTGCATGTAT 57.468 30.769 0.00 0.00 0.00 2.29
1967 2511 4.946157 CAGCCTACAATCACAGGAGAAATT 59.054 41.667 0.00 0.00 33.42 1.82
2164 2709 4.479619 AGCTGAAAACGCTTCATCAATTC 58.520 39.130 1.37 0.00 32.98 2.17
2190 2735 2.237392 AGCCACCAAGACTTATCACCTC 59.763 50.000 0.00 0.00 0.00 3.85
2210 2766 7.714377 TCACCTCGGTAAGTTGTTTACATAAAA 59.286 33.333 0.00 0.00 42.85 1.52
2221 2777 9.593134 AGTTGTTTACATAAAATGCAGTCAAAA 57.407 25.926 0.00 0.00 0.00 2.44
2282 2839 5.341872 AATATTGCTTACATTGGCTGCAA 57.658 34.783 0.50 12.36 45.62 4.08
2283 2840 2.728690 TTGCTTACATTGGCTGCAAG 57.271 45.000 0.50 0.00 38.49 4.01
2405 2980 6.645827 CAGATGCATAATGTTTGTTTCCAACA 59.354 34.615 0.00 0.00 40.21 3.33
2455 3275 8.608844 AGCATGTGGAATTATAGTAAAGCTAC 57.391 34.615 0.00 0.00 31.59 3.58
2490 3310 8.707938 ATCCAATGCTTTAGTATTTTCTTTGC 57.292 30.769 0.00 0.00 0.00 3.68
2505 3325 3.348119 TCTTTGCCAATTACGCCATGTA 58.652 40.909 0.00 0.00 0.00 2.29
2527 3347 3.455910 ACCTTGAGAGCTATGCACCATTA 59.544 43.478 0.00 0.00 0.00 1.90
2528 3348 4.103785 ACCTTGAGAGCTATGCACCATTAT 59.896 41.667 0.00 0.00 0.00 1.28
2529 3349 5.068636 CCTTGAGAGCTATGCACCATTATT 58.931 41.667 0.00 0.00 0.00 1.40
2541 3364 4.144297 GCACCATTATTCTTATCTGCCCA 58.856 43.478 0.00 0.00 0.00 5.36
2545 3368 7.687592 GCACCATTATTCTTATCTGCCCATTTT 60.688 37.037 0.00 0.00 0.00 1.82
2617 3440 7.210174 TCAGTATATCTCAACAAGTATGTGCC 58.790 38.462 0.00 0.00 40.46 5.01
2637 3460 3.426525 GCCAAGTTCTTTTTCATCTTGCG 59.573 43.478 0.00 0.00 35.58 4.85
2641 3464 3.817647 AGTTCTTTTTCATCTTGCGAGCT 59.182 39.130 0.00 0.00 0.00 4.09
2659 3482 9.758651 TTGCGAGCTCTTATTTAAATATCTACA 57.241 29.630 12.85 2.68 0.00 2.74
2733 3594 5.389520 TGACCTTAGATATCTGAGTCCCTG 58.610 45.833 19.88 9.19 0.00 4.45
2807 3758 8.700051 ACTTATCTATGCAAGTCTTCACAGTAT 58.300 33.333 0.00 0.00 28.88 2.12
2817 3768 3.011818 TCTTCACAGTATGGCATGCAAG 58.988 45.455 21.36 10.91 43.62 4.01
2875 3828 7.875327 AGTGTTATGGTTAACTTGTGAAACT 57.125 32.000 5.42 0.00 38.81 2.66
2942 3900 8.954729 TCATTTACTCCCTCCATTCCATAATTA 58.045 33.333 0.00 0.00 0.00 1.40
2947 3905 7.006509 ACTCCCTCCATTCCATAATTATTGTG 58.993 38.462 0.00 0.00 0.00 3.33
2953 3941 6.777091 TCCATTCCATAATTATTGTGGTGGAG 59.223 38.462 20.93 10.87 40.08 3.86
2975 3963 4.961099 AGCGGAGGGAGTAGTAACTATTTT 59.039 41.667 0.00 0.00 35.56 1.82
2981 3973 7.092979 GGAGGGAGTAGTAACTATTTTCCAAGT 60.093 40.741 0.00 0.00 35.56 3.16
3045 4038 8.779303 ACTATGTGAATTCGAGTAGTCTCATAG 58.221 37.037 22.46 22.46 43.55 2.23
3320 4313 9.871238 GTCAAGTAACAGAACATTAATCTCCTA 57.129 33.333 0.00 0.00 0.00 2.94
3590 4590 6.036735 TCTCAATTATTCGTTCAAATCGACCC 59.963 38.462 0.00 0.00 37.05 4.46
3624 4624 2.998670 CCTTATGATGCAGGTATCAGCG 59.001 50.000 6.25 0.00 40.16 5.18
3634 4642 1.097547 GGTATCAGCGGTTGCAGCAT 61.098 55.000 2.05 0.00 46.23 3.79
3708 4717 2.294979 AGCCATGCTCATGTGTGTATG 58.705 47.619 8.81 6.28 37.11 2.39
3720 4933 4.882842 TGTGTGTATGTCAAGCTCCTAA 57.117 40.909 0.00 0.00 0.00 2.69
3736 4949 6.174049 AGCTCCTAATGTTTACTCTGTTTCC 58.826 40.000 0.00 0.00 0.00 3.13
3996 5233 1.608590 ACCATTCAGTTTTGACGCAGG 59.391 47.619 0.00 0.00 31.71 4.85
4106 5356 9.653287 TGGACTTTTGTTCTCTGTAATATACTG 57.347 33.333 0.00 0.00 0.00 2.74
4165 5421 7.598278 TGGTTGTGTTGAAATATATGAACACC 58.402 34.615 21.50 13.34 44.94 4.16
4172 5428 8.892723 TGTTGAAATATATGAACACCTCACATC 58.107 33.333 0.00 0.00 36.69 3.06
4238 5505 9.500864 CTCTGTATACATGATGATATCTGTTCG 57.499 37.037 5.91 0.00 0.00 3.95
4250 5517 5.348724 TGATATCTGTTCGCAAAGTGTCTTC 59.651 40.000 3.98 0.00 0.00 2.87
4251 5518 2.899976 TCTGTTCGCAAAGTGTCTTCA 58.100 42.857 0.00 0.00 0.00 3.02
4252 5519 2.866156 TCTGTTCGCAAAGTGTCTTCAG 59.134 45.455 0.00 0.00 0.00 3.02
4253 5520 2.866156 CTGTTCGCAAAGTGTCTTCAGA 59.134 45.455 0.00 0.00 0.00 3.27
4254 5521 3.466836 TGTTCGCAAAGTGTCTTCAGAT 58.533 40.909 0.00 0.00 0.00 2.90
4278 5547 3.947910 TTTTAGTGTGTACTCCCTCCG 57.052 47.619 0.00 0.00 38.36 4.63
4279 5548 2.592102 TTAGTGTGTACTCCCTCCGT 57.408 50.000 0.00 0.00 38.36 4.69
4280 5549 2.119801 TAGTGTGTACTCCCTCCGTC 57.880 55.000 0.00 0.00 38.36 4.79
4281 5550 0.611340 AGTGTGTACTCCCTCCGTCC 60.611 60.000 0.00 0.00 28.79 4.79
4282 5551 0.611340 GTGTGTACTCCCTCCGTCCT 60.611 60.000 0.00 0.00 0.00 3.85
4283 5552 0.994247 TGTGTACTCCCTCCGTCCTA 59.006 55.000 0.00 0.00 0.00 2.94
4284 5553 1.355381 TGTGTACTCCCTCCGTCCTAA 59.645 52.381 0.00 0.00 0.00 2.69
4285 5554 2.225091 TGTGTACTCCCTCCGTCCTAAA 60.225 50.000 0.00 0.00 0.00 1.85
4286 5555 2.827921 GTGTACTCCCTCCGTCCTAAAA 59.172 50.000 0.00 0.00 0.00 1.52
4287 5556 3.450096 GTGTACTCCCTCCGTCCTAAAAT 59.550 47.826 0.00 0.00 0.00 1.82
4288 5557 4.646492 GTGTACTCCCTCCGTCCTAAAATA 59.354 45.833 0.00 0.00 0.00 1.40
4289 5558 5.127682 GTGTACTCCCTCCGTCCTAAAATAA 59.872 44.000 0.00 0.00 0.00 1.40
4290 5559 5.361857 TGTACTCCCTCCGTCCTAAAATAAG 59.638 44.000 0.00 0.00 0.00 1.73
4291 5560 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
4292 5561 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
4293 5562 4.355549 TCCCTCCGTCCTAAAATAAGTGA 58.644 43.478 0.00 0.00 0.00 3.41
4294 5563 4.161001 TCCCTCCGTCCTAAAATAAGTGAC 59.839 45.833 0.00 0.00 0.00 3.67
4295 5564 4.161754 CCCTCCGTCCTAAAATAAGTGACT 59.838 45.833 0.00 0.00 0.00 3.41
4296 5565 5.349809 CCTCCGTCCTAAAATAAGTGACTC 58.650 45.833 0.00 0.00 0.00 3.36
4297 5566 5.105473 CCTCCGTCCTAAAATAAGTGACTCA 60.105 44.000 0.00 0.00 0.00 3.41
4298 5567 6.349243 TCCGTCCTAAAATAAGTGACTCAA 57.651 37.500 0.00 0.00 0.00 3.02
4299 5568 6.161381 TCCGTCCTAAAATAAGTGACTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
4300 5569 6.014840 TCCGTCCTAAAATAAGTGACTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
4301 5570 6.649557 CCGTCCTAAAATAAGTGACTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
4302 5571 7.172703 CCGTCCTAAAATAAGTGACTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
4303 5572 8.009974 CGTCCTAAAATAAGTGACTCAACTTTG 58.990 37.037 0.00 0.00 40.77 2.77
4304 5573 8.837389 GTCCTAAAATAAGTGACTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
4312 5581 7.730364 AAGTGACTCAACTTTGTATACAAGG 57.270 36.000 22.26 22.26 37.05 3.61
4313 5582 6.827727 AGTGACTCAACTTTGTATACAAGGT 58.172 36.000 23.46 23.46 46.17 3.50
4332 5601 8.828688 ACAAGGTTAGTATACAAAGTTGAGTC 57.171 34.615 5.50 0.00 0.00 3.36
4333 5602 8.426489 ACAAGGTTAGTATACAAAGTTGAGTCA 58.574 33.333 5.50 0.00 0.00 3.41
4334 5603 8.709646 CAAGGTTAGTATACAAAGTTGAGTCAC 58.290 37.037 5.50 0.00 0.00 3.67
4335 5604 8.191534 AGGTTAGTATACAAAGTTGAGTCACT 57.808 34.615 5.50 0.00 0.00 3.41
4336 5605 8.648693 AGGTTAGTATACAAAGTTGAGTCACTT 58.351 33.333 5.50 0.00 38.74 3.16
4337 5606 9.918630 GGTTAGTATACAAAGTTGAGTCACTTA 57.081 33.333 5.50 0.00 35.87 2.24
4345 5614 8.974060 ACAAAGTTGAGTCACTTATTTTAGGA 57.026 30.769 0.00 0.00 35.87 2.94
4346 5615 8.837389 ACAAAGTTGAGTCACTTATTTTAGGAC 58.163 33.333 0.00 0.00 35.87 3.85
4347 5616 7.653767 AAGTTGAGTCACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
4348 5617 6.164176 AGTTGAGTCACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 33.84 4.79
4349 5618 5.988310 TGAGTCACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 33.84 4.69
4350 5619 5.962433 TGAGTCACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 33.84 4.63
4351 5620 5.105473 TGAGTCACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 33.84 4.30
4352 5621 4.161754 AGTCACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 33.84 4.30
4353 5622 4.161001 GTCACTTATTTTAGGACGGAGGGA 59.839 45.833 0.00 0.00 0.00 4.20
4354 5623 4.404715 TCACTTATTTTAGGACGGAGGGAG 59.595 45.833 0.00 0.00 0.00 4.30
4355 5624 4.161754 CACTTATTTTAGGACGGAGGGAGT 59.838 45.833 0.00 0.00 0.00 3.85
4356 5625 5.361857 CACTTATTTTAGGACGGAGGGAGTA 59.638 44.000 0.00 0.00 0.00 2.59
4357 5626 6.041751 CACTTATTTTAGGACGGAGGGAGTAT 59.958 42.308 0.00 0.00 0.00 2.12
4358 5627 6.614496 ACTTATTTTAGGACGGAGGGAGTATT 59.386 38.462 0.00 0.00 0.00 1.89
4359 5628 5.970501 ATTTTAGGACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
4362 5631 2.108970 AGGACGGAGGGAGTATTTGTC 58.891 52.381 0.00 0.00 0.00 3.18
4364 5633 2.159085 GGACGGAGGGAGTATTTGTCAG 60.159 54.545 0.00 0.00 0.00 3.51
4372 5641 2.611518 GAGTATTTGTCAGCGCTCAGT 58.388 47.619 7.13 0.00 0.00 3.41
4373 5642 2.341257 AGTATTTGTCAGCGCTCAGTG 58.659 47.619 7.13 0.00 0.00 3.66
4381 5650 2.096516 GTCAGCGCTCAGTGAAAAAGAG 60.097 50.000 7.13 0.00 0.00 2.85
4398 5667 0.905357 GAGTGACCTACTGTGCCCAT 59.095 55.000 0.00 0.00 40.53 4.00
4405 5674 3.571590 ACCTACTGTGCCCATTTTCAAA 58.428 40.909 0.00 0.00 0.00 2.69
4452 5721 1.856802 CCAAAGCAAACTTGACAGGC 58.143 50.000 0.00 0.00 35.85 4.85
4472 5742 1.522668 CATGAAGGCTGTTTGGACGA 58.477 50.000 0.00 0.00 0.00 4.20
4512 5786 6.036735 GCCATCAGTATTTAGCTCGTTAAACA 59.963 38.462 0.00 0.00 0.00 2.83
4520 5794 1.583495 GCTCGTTAAACAGGGCCCAC 61.583 60.000 27.56 11.50 0.00 4.61
4525 5800 1.002315 GTTAAACAGGGCCCACGAGTA 59.998 52.381 27.56 6.32 0.00 2.59
4531 5806 0.696501 AGGGCCCACGAGTAAAATGT 59.303 50.000 27.56 0.00 0.00 2.71
4534 5809 2.876550 GGGCCCACGAGTAAAATGTATC 59.123 50.000 19.95 0.00 0.00 2.24
4603 5878 1.851304 AGGGCATGTACAATTGGGTG 58.149 50.000 10.83 4.07 0.00 4.61
4608 5883 2.098117 GCATGTACAATTGGGTGCTCTC 59.902 50.000 10.83 0.00 0.00 3.20
4609 5884 3.346315 CATGTACAATTGGGTGCTCTCA 58.654 45.455 10.83 0.00 0.00 3.27
4610 5885 3.719268 TGTACAATTGGGTGCTCTCAT 57.281 42.857 10.83 0.00 0.00 2.90
4611 5886 3.609853 TGTACAATTGGGTGCTCTCATC 58.390 45.455 10.83 0.00 0.00 2.92
4612 5887 1.742761 ACAATTGGGTGCTCTCATCG 58.257 50.000 10.83 0.00 0.00 3.84
4613 5888 1.003580 ACAATTGGGTGCTCTCATCGT 59.996 47.619 10.83 0.00 0.00 3.73
4614 5889 2.236146 ACAATTGGGTGCTCTCATCGTA 59.764 45.455 10.83 0.00 0.00 3.43
4615 5890 3.270027 CAATTGGGTGCTCTCATCGTAA 58.730 45.455 0.00 0.00 0.00 3.18
4616 5891 3.845781 ATTGGGTGCTCTCATCGTAAT 57.154 42.857 0.00 0.00 0.00 1.89
4617 5892 4.955811 ATTGGGTGCTCTCATCGTAATA 57.044 40.909 0.00 0.00 0.00 0.98
4618 5893 4.955811 TTGGGTGCTCTCATCGTAATAT 57.044 40.909 0.00 0.00 0.00 1.28
4619 5894 6.605471 ATTGGGTGCTCTCATCGTAATATA 57.395 37.500 0.00 0.00 0.00 0.86
4620 5895 6.413783 TTGGGTGCTCTCATCGTAATATAA 57.586 37.500 0.00 0.00 0.00 0.98
4621 5896 6.413783 TGGGTGCTCTCATCGTAATATAAA 57.586 37.500 0.00 0.00 0.00 1.40
4622 5897 6.220930 TGGGTGCTCTCATCGTAATATAAAC 58.779 40.000 0.00 0.00 0.00 2.01
4632 5907 7.300320 TCATCGTAATATAAACGCGTACATCT 58.700 34.615 14.46 0.00 40.12 2.90
4640 5915 8.806177 ATATAAACGCGTACATCTTATGACAA 57.194 30.769 14.46 0.00 0.00 3.18
4682 5988 3.428999 CGTCCTTTGAGATACACGGTGAT 60.429 47.826 16.29 3.99 0.00 3.06
4706 6012 4.171754 GCTAACAGAACCGATTCTAACGT 58.828 43.478 0.00 0.00 43.69 3.99
4709 6015 7.134815 GCTAACAGAACCGATTCTAACGTATA 58.865 38.462 0.00 0.00 43.69 1.47
4738 6045 4.060900 CCACTGGATCCATCTAACATTCG 58.939 47.826 16.63 1.50 0.00 3.34
4788 6115 3.828875 AGGCTAAATCGAAGCTTAGCT 57.171 42.857 24.57 0.00 43.44 3.32
4967 6297 3.323979 AGGAACAACTACTGTGATTCGGT 59.676 43.478 0.00 0.00 38.67 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.997621 TTCTGTAACATCTAGTGGTTGATTAC 57.002 34.615 10.63 3.72 0.00 1.89
2 3 9.653287 CTTTCTGTAACATCTAGTGGTTGATTA 57.347 33.333 10.63 0.00 0.00 1.75
46 47 6.206634 TCAACGGTTGCTTAGAAGAAAATCAT 59.793 34.615 15.89 0.00 0.00 2.45
62 63 4.151689 ACGATTACAATCAGTCAACGGTTG 59.848 41.667 14.62 14.62 35.11 3.77
64 65 3.921677 ACGATTACAATCAGTCAACGGT 58.078 40.909 0.00 0.00 35.11 4.83
71 73 8.604035 CAATAGTAGCAAACGATTACAATCAGT 58.396 33.333 0.00 0.00 32.34 3.41
100 102 5.714863 TGCATCCAATATGGGGAACTTTAT 58.285 37.500 0.00 0.00 38.32 1.40
214 223 4.156556 ACGATGTAACAGAACGGTAAGCTA 59.843 41.667 0.00 0.00 0.00 3.32
216 225 3.248266 ACGATGTAACAGAACGGTAAGC 58.752 45.455 0.00 0.00 0.00 3.09
221 230 3.059044 CGAAAGACGATGTAACAGAACGG 59.941 47.826 0.00 0.00 45.77 4.44
222 231 3.059044 CCGAAAGACGATGTAACAGAACG 59.941 47.826 0.00 0.00 45.77 3.95
225 234 2.559668 ACCCGAAAGACGATGTAACAGA 59.440 45.455 0.00 0.00 45.77 3.41
229 238 2.070783 GCAACCCGAAAGACGATGTAA 58.929 47.619 0.00 0.00 45.77 2.41
236 245 4.900635 ATGATATTGCAACCCGAAAGAC 57.099 40.909 0.00 0.00 0.00 3.01
242 251 5.050091 GTCTAGACAATGATATTGCAACCCG 60.050 44.000 18.20 0.00 0.00 5.28
257 266 7.987458 GGATCATGAAGTAAATGGTCTAGACAA 59.013 37.037 23.91 14.25 35.79 3.18
259 268 7.731054 AGGATCATGAAGTAAATGGTCTAGAC 58.269 38.462 14.87 14.87 35.79 2.59
265 286 6.617371 ACCTAGAGGATCATGAAGTAAATGGT 59.383 38.462 0.00 1.46 37.82 3.55
290 311 2.122167 GTTGTCCGTTTGTGGGGCA 61.122 57.895 0.00 0.00 37.39 5.36
294 315 3.065510 TGTTATGTGTTGTCCGTTTGTGG 59.934 43.478 0.00 0.00 0.00 4.17
295 316 4.201871 ACTGTTATGTGTTGTCCGTTTGTG 60.202 41.667 0.00 0.00 0.00 3.33
296 317 3.942748 ACTGTTATGTGTTGTCCGTTTGT 59.057 39.130 0.00 0.00 0.00 2.83
313 829 2.504367 GCCACTCACCACATTACTGTT 58.496 47.619 0.00 0.00 31.62 3.16
317 833 1.196808 CAACGCCACTCACCACATTAC 59.803 52.381 0.00 0.00 0.00 1.89
318 834 1.202710 ACAACGCCACTCACCACATTA 60.203 47.619 0.00 0.00 0.00 1.90
326 842 1.000607 GAGTAGACACAACGCCACTCA 60.001 52.381 0.00 0.00 34.06 3.41
332 848 0.663568 AGCACGAGTAGACACAACGC 60.664 55.000 0.00 0.00 32.61 4.84
339 857 1.002366 CATGGCAAGCACGAGTAGAC 58.998 55.000 0.00 0.00 0.00 2.59
347 865 2.918345 TTGCGGTCATGGCAAGCAC 61.918 57.895 17.40 0.00 44.79 4.40
354 872 2.223688 TGAAAACAAGTTGCGGTCATGG 60.224 45.455 1.81 0.00 0.00 3.66
358 876 2.159296 ACCTTGAAAACAAGTTGCGGTC 60.159 45.455 1.81 0.00 0.00 4.79
368 886 4.528596 TCAAAAGAACCCACCTTGAAAACA 59.471 37.500 0.00 0.00 0.00 2.83
371 889 5.208121 AGATCAAAAGAACCCACCTTGAAA 58.792 37.500 0.00 0.00 30.37 2.69
376 894 3.868754 GCGTAGATCAAAAGAACCCACCT 60.869 47.826 0.00 0.00 0.00 4.00
378 896 2.093783 CGCGTAGATCAAAAGAACCCAC 59.906 50.000 0.00 0.00 0.00 4.61
384 902 2.753452 AGGAGACGCGTAGATCAAAAGA 59.247 45.455 13.97 0.00 0.00 2.52
388 906 1.746470 TGAGGAGACGCGTAGATCAA 58.254 50.000 13.97 0.00 0.00 2.57
404 922 5.818136 AAACATTAACCACCATCGATGAG 57.182 39.130 26.86 17.96 0.00 2.90
412 930 3.858877 GCGCATGAAAACATTAACCACCA 60.859 43.478 0.30 0.00 0.00 4.17
415 933 3.573598 CAGCGCATGAAAACATTAACCA 58.426 40.909 11.47 0.00 0.00 3.67
420 938 1.401409 CGACCAGCGCATGAAAACATT 60.401 47.619 11.47 0.00 0.00 2.71
428 946 3.043713 ACACACGACCAGCGCATG 61.044 61.111 11.47 4.88 46.04 4.06
429 947 3.043713 CACACACGACCAGCGCAT 61.044 61.111 11.47 0.00 46.04 4.73
437 955 0.027586 GTGCAAAGACCACACACGAC 59.972 55.000 0.00 0.00 34.43 4.34
440 958 0.027586 GTCGTGCAAAGACCACACAC 59.972 55.000 11.35 0.00 39.53 3.82
442 960 1.149361 TCGTCGTGCAAAGACCACAC 61.149 55.000 15.34 0.00 42.59 3.82
459 977 5.985781 ACAAAACTTGTTGTAGTAGCATCG 58.014 37.500 0.00 0.00 42.22 3.84
462 980 4.271533 CGGACAAAACTTGTTGTAGTAGCA 59.728 41.667 0.00 0.00 45.52 3.49
464 982 4.319261 GCCGGACAAAACTTGTTGTAGTAG 60.319 45.833 5.05 0.00 45.52 2.57
466 984 2.356695 GCCGGACAAAACTTGTTGTAGT 59.643 45.455 5.05 0.00 45.52 2.73
473 991 3.454941 CGAAGCCGGACAAAACTTG 57.545 52.632 5.05 0.00 0.00 3.16
485 1003 4.214327 CTCTCCCTCGCCGAAGCC 62.214 72.222 0.00 0.00 34.57 4.35
486 1004 3.141488 TCTCTCCCTCGCCGAAGC 61.141 66.667 0.00 0.00 0.00 3.86
501 1019 2.507992 GCGCTGCTGTCATCGTCT 60.508 61.111 0.00 0.00 34.62 4.18
526 1044 1.148310 TTACAAGCACTGAAGCGAGC 58.852 50.000 0.00 0.00 40.15 5.03
589 1111 2.954316 TCGTGATAGTGCAACGAACAT 58.046 42.857 8.05 0.00 45.86 2.71
594 1116 6.958752 TCATTTTTAATCGTGATAGTGCAACG 59.041 34.615 1.46 1.46 45.86 4.10
655 1179 7.579589 TGCGAGGAATTACAAAATTTTGATG 57.420 32.000 32.20 11.85 40.55 3.07
777 1308 4.261578 ACAAGTAATTCCGAACGAAGGA 57.738 40.909 0.00 0.00 32.78 3.36
778 1309 5.352643 AAACAAGTAATTCCGAACGAAGG 57.647 39.130 0.00 0.00 32.78 3.46
779 1310 5.070862 CGAAACAAGTAATTCCGAACGAAG 58.929 41.667 0.00 0.00 32.78 3.79
780 1311 4.084433 CCGAAACAAGTAATTCCGAACGAA 60.084 41.667 0.00 0.00 34.14 3.85
781 1312 3.429543 CCGAAACAAGTAATTCCGAACGA 59.570 43.478 0.00 0.00 0.00 3.85
782 1313 3.429543 TCCGAAACAAGTAATTCCGAACG 59.570 43.478 0.00 0.00 0.00 3.95
783 1314 4.996062 TCCGAAACAAGTAATTCCGAAC 57.004 40.909 0.00 0.00 0.00 3.95
784 1315 6.375377 CATTTCCGAAACAAGTAATTCCGAA 58.625 36.000 0.00 0.00 0.00 4.30
785 1316 5.106475 CCATTTCCGAAACAAGTAATTCCGA 60.106 40.000 0.00 0.00 0.00 4.55
786 1317 5.092781 CCATTTCCGAAACAAGTAATTCCG 58.907 41.667 0.00 0.00 0.00 4.30
787 1318 6.262193 TCCATTTCCGAAACAAGTAATTCC 57.738 37.500 0.00 0.00 0.00 3.01
788 1319 7.312899 ACATCCATTTCCGAAACAAGTAATTC 58.687 34.615 0.00 0.00 0.00 2.17
789 1320 7.227049 ACATCCATTTCCGAAACAAGTAATT 57.773 32.000 0.00 0.00 0.00 1.40
790 1321 6.834168 ACATCCATTTCCGAAACAAGTAAT 57.166 33.333 0.00 0.00 0.00 1.89
791 1322 7.827236 AGATACATCCATTTCCGAAACAAGTAA 59.173 33.333 0.00 0.00 0.00 2.24
792 1323 7.335627 AGATACATCCATTTCCGAAACAAGTA 58.664 34.615 0.00 0.00 0.00 2.24
793 1324 6.180472 AGATACATCCATTTCCGAAACAAGT 58.820 36.000 0.00 0.00 0.00 3.16
794 1325 6.683974 AGATACATCCATTTCCGAAACAAG 57.316 37.500 0.00 0.00 0.00 3.16
795 1326 8.568676 TTTAGATACATCCATTTCCGAAACAA 57.431 30.769 0.00 0.00 0.00 2.83
796 1327 8.455682 GTTTTAGATACATCCATTTCCGAAACA 58.544 33.333 0.00 0.00 0.00 2.83
797 1328 8.674607 AGTTTTAGATACATCCATTTCCGAAAC 58.325 33.333 0.00 0.00 0.00 2.78
798 1329 8.801882 AGTTTTAGATACATCCATTTCCGAAA 57.198 30.769 0.00 0.00 0.00 3.46
799 1330 9.893634 TTAGTTTTAGATACATCCATTTCCGAA 57.106 29.630 0.00 0.00 0.00 4.30
800 1331 9.893634 TTTAGTTTTAGATACATCCATTTCCGA 57.106 29.630 0.00 0.00 0.00 4.55
827 1358 8.929746 CGCAGAAATGAATGTATATAGACACAT 58.070 33.333 1.52 0.22 36.96 3.21
828 1359 8.141268 TCGCAGAAATGAATGTATATAGACACA 58.859 33.333 1.52 0.00 30.52 3.72
829 1360 8.428536 GTCGCAGAAATGAATGTATATAGACAC 58.571 37.037 1.52 0.00 39.69 3.67
830 1361 8.141268 TGTCGCAGAAATGAATGTATATAGACA 58.859 33.333 2.07 2.07 39.69 3.41
831 1362 8.520835 TGTCGCAGAAATGAATGTATATAGAC 57.479 34.615 0.00 0.00 39.69 2.59
832 1363 7.814587 CCTGTCGCAGAAATGAATGTATATAGA 59.185 37.037 8.20 0.00 39.69 1.98
833 1364 7.814587 TCCTGTCGCAGAAATGAATGTATATAG 59.185 37.037 8.20 0.00 39.69 1.31
834 1365 7.666623 TCCTGTCGCAGAAATGAATGTATATA 58.333 34.615 8.20 0.00 39.69 0.86
835 1366 6.524734 TCCTGTCGCAGAAATGAATGTATAT 58.475 36.000 8.20 0.00 39.69 0.86
836 1367 5.912892 TCCTGTCGCAGAAATGAATGTATA 58.087 37.500 8.20 0.00 39.69 1.47
837 1368 4.769688 TCCTGTCGCAGAAATGAATGTAT 58.230 39.130 8.20 0.00 39.69 2.29
838 1369 4.200838 TCCTGTCGCAGAAATGAATGTA 57.799 40.909 8.20 0.00 39.69 2.29
839 1370 3.057969 TCCTGTCGCAGAAATGAATGT 57.942 42.857 8.20 0.00 39.69 2.71
840 1371 4.627611 ATTCCTGTCGCAGAAATGAATG 57.372 40.909 8.20 0.00 39.69 2.67
841 1372 4.096984 GGAATTCCTGTCGCAGAAATGAAT 59.903 41.667 17.73 6.04 39.69 2.57
842 1373 3.440173 GGAATTCCTGTCGCAGAAATGAA 59.560 43.478 17.73 4.30 39.69 2.57
843 1374 3.009723 GGAATTCCTGTCGCAGAAATGA 58.990 45.455 17.73 0.00 39.69 2.57
844 1375 2.223112 CGGAATTCCTGTCGCAGAAATG 60.223 50.000 22.05 0.00 39.69 2.32
845 1376 2.009774 CGGAATTCCTGTCGCAGAAAT 58.990 47.619 22.05 0.00 39.69 2.17
846 1377 1.001520 TCGGAATTCCTGTCGCAGAAA 59.998 47.619 22.05 0.00 39.69 2.52
847 1378 0.606096 TCGGAATTCCTGTCGCAGAA 59.394 50.000 22.05 0.00 39.69 3.02
848 1379 0.606096 TTCGGAATTCCTGTCGCAGA 59.394 50.000 22.05 7.36 32.44 4.26
849 1380 0.721718 GTTCGGAATTCCTGTCGCAG 59.278 55.000 22.05 5.00 0.00 5.18
850 1381 1.011968 CGTTCGGAATTCCTGTCGCA 61.012 55.000 22.05 0.00 0.00 5.10
851 1382 1.693083 CCGTTCGGAATTCCTGTCGC 61.693 60.000 22.05 7.04 0.00 5.19
852 1383 0.108992 TCCGTTCGGAATTCCTGTCG 60.109 55.000 22.05 19.87 0.00 4.35
853 1384 1.641577 CTCCGTTCGGAATTCCTGTC 58.358 55.000 22.05 10.51 33.41 3.51
854 1385 0.249398 CCTCCGTTCGGAATTCCTGT 59.751 55.000 22.05 0.00 33.41 4.00
855 1386 0.462047 CCCTCCGTTCGGAATTCCTG 60.462 60.000 22.05 15.09 33.41 3.86
856 1387 0.616679 TCCCTCCGTTCGGAATTCCT 60.617 55.000 22.05 0.00 33.41 3.36
857 1388 0.179081 CTCCCTCCGTTCGGAATTCC 60.179 60.000 15.01 15.01 33.41 3.01
858 1389 0.535797 ACTCCCTCCGTTCGGAATTC 59.464 55.000 14.79 0.00 33.41 2.17
859 1390 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
860 1391 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
861 1392 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
862 1393 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
863 1394 1.755179 TAACTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
864 1395 3.855689 TTTAACTACTCCCTCCGTTCG 57.144 47.619 0.00 0.00 0.00 3.95
865 1396 5.397142 TCTTTTAACTACTCCCTCCGTTC 57.603 43.478 0.00 0.00 0.00 3.95
866 1397 6.666980 AGTATCTTTTAACTACTCCCTCCGTT 59.333 38.462 0.00 0.00 0.00 4.44
867 1398 6.193504 AGTATCTTTTAACTACTCCCTCCGT 58.806 40.000 0.00 0.00 0.00 4.69
868 1399 6.712179 AGTATCTTTTAACTACTCCCTCCG 57.288 41.667 0.00 0.00 0.00 4.63
875 1406 7.344913 TCGAGGAGGAGTATCTTTTAACTACT 58.655 38.462 0.00 0.00 39.69 2.57
876 1407 7.498570 TCTCGAGGAGGAGTATCTTTTAACTAC 59.501 40.741 13.56 0.00 35.52 2.73
877 1408 7.571919 TCTCGAGGAGGAGTATCTTTTAACTA 58.428 38.462 13.56 0.00 35.52 2.24
893 1424 0.740868 TTTTGGCGCATCTCGAGGAG 60.741 55.000 13.56 6.63 41.67 3.69
894 1425 0.321210 TTTTTGGCGCATCTCGAGGA 60.321 50.000 13.56 0.00 41.67 3.71
895 1426 0.097674 CTTTTTGGCGCATCTCGAGG 59.902 55.000 13.56 0.00 41.67 4.63
896 1427 1.078709 TCTTTTTGGCGCATCTCGAG 58.921 50.000 10.83 5.93 41.67 4.04
897 1428 0.796312 GTCTTTTTGGCGCATCTCGA 59.204 50.000 10.83 0.00 41.67 4.04
898 1429 0.516877 TGTCTTTTTGGCGCATCTCG 59.483 50.000 10.83 0.00 42.12 4.04
945 1478 3.841379 AAAGCGAGCGCAGTGACGA 62.841 57.895 17.68 0.00 44.88 4.20
1073 1611 2.604686 AGGAGGCTTGCACGAGGA 60.605 61.111 0.00 0.00 0.00 3.71
1091 1629 2.270527 GGGAGGCCAGAGAGCAAC 59.729 66.667 5.01 0.00 0.00 4.17
1489 2027 0.596083 TCAACAACAAATTGCCGCCG 60.596 50.000 0.00 0.00 39.66 6.46
1529 2069 1.269051 GCCGTGCAACTTTAGCAAACT 60.269 47.619 0.00 0.00 44.64 2.66
1530 2070 1.128513 GCCGTGCAACTTTAGCAAAC 58.871 50.000 0.00 0.00 44.64 2.93
1549 2090 3.569701 ACAGCAACCACCTCAATTTACAG 59.430 43.478 0.00 0.00 0.00 2.74
1551 2092 5.240844 AGTTACAGCAACCACCTCAATTTAC 59.759 40.000 0.00 0.00 37.93 2.01
1561 2102 3.775661 ACAACAAGTTACAGCAACCAC 57.224 42.857 0.00 0.00 37.93 4.16
1568 2109 3.746492 GCACTCCCTACAACAAGTTACAG 59.254 47.826 0.00 0.00 0.00 2.74
1655 2196 2.901839 GGATAATTCCCAGCCATGCAAT 59.098 45.455 0.00 0.00 35.84 3.56
1823 2364 8.251721 GGATGGAAATATTATGAGCTACGTACT 58.748 37.037 0.00 0.00 0.00 2.73
1824 2365 7.491696 GGGATGGAAATATTATGAGCTACGTAC 59.508 40.741 0.00 0.00 0.00 3.67
1825 2366 7.364408 GGGGATGGAAATATTATGAGCTACGTA 60.364 40.741 0.00 0.00 0.00 3.57
1826 2367 6.407202 GGGATGGAAATATTATGAGCTACGT 58.593 40.000 0.00 0.00 0.00 3.57
1827 2368 5.817816 GGGGATGGAAATATTATGAGCTACG 59.182 44.000 0.00 0.00 0.00 3.51
1828 2369 6.599638 GTGGGGATGGAAATATTATGAGCTAC 59.400 42.308 0.00 0.00 0.00 3.58
1901 2445 5.574188 AGCACCATATCATTAATTCTCCCC 58.426 41.667 0.00 0.00 0.00 4.81
1916 2460 6.320164 AGTGTTTCAAACAGTTTAGCACCATA 59.680 34.615 2.26 0.00 42.19 2.74
2092 2637 5.395682 ACAACCTGTTAGACACGCTAATA 57.604 39.130 0.00 0.00 40.94 0.98
2164 2709 0.036732 TAAGTCTTGGTGGCTGGCAG 59.963 55.000 10.94 10.94 0.00 4.85
2190 2735 7.806014 ACTGCATTTTATGTAAACAACTTACCG 59.194 33.333 0.00 0.00 39.43 4.02
2210 2766 9.107177 TCAATAAAACAACAATTTTGACTGCAT 57.893 25.926 0.00 0.00 33.80 3.96
2282 2839 1.001641 GGAACTGGGTCATGCAGCT 60.002 57.895 0.00 0.00 0.00 4.24
2283 2840 1.303561 TGGAACTGGGTCATGCAGC 60.304 57.895 0.00 0.00 0.00 5.25
2284 2841 1.310933 GCTGGAACTGGGTCATGCAG 61.311 60.000 0.00 0.00 35.84 4.41
2285 2842 1.303561 GCTGGAACTGGGTCATGCA 60.304 57.895 0.00 0.00 0.00 3.96
2286 2843 0.895100 TTGCTGGAACTGGGTCATGC 60.895 55.000 0.00 0.00 0.00 4.06
2287 2844 1.747355 GATTGCTGGAACTGGGTCATG 59.253 52.381 0.00 0.00 0.00 3.07
2288 2845 1.637553 AGATTGCTGGAACTGGGTCAT 59.362 47.619 0.00 0.00 0.00 3.06
2291 2848 2.619074 GCTTAGATTGCTGGAACTGGGT 60.619 50.000 0.00 0.00 0.00 4.51
2343 2900 6.349611 GCGCACATTAAATCCAGAATATCCAT 60.350 38.462 0.30 0.00 0.00 3.41
2410 3230 9.247861 ACATGCTCTAAGGAAATGTATTTCTTT 57.752 29.630 15.81 15.81 44.70 2.52
2419 3239 6.461110 AATTCCACATGCTCTAAGGAAATG 57.539 37.500 0.00 0.00 41.27 2.32
2490 3310 3.275143 TCAAGGTACATGGCGTAATTGG 58.725 45.455 0.00 0.00 33.13 3.16
2505 3325 1.279496 TGGTGCATAGCTCTCAAGGT 58.721 50.000 0.00 0.00 37.01 3.50
2527 3347 9.822185 GTTTCAATAAAATGGGCAGATAAGAAT 57.178 29.630 0.00 0.00 0.00 2.40
2528 3348 8.811017 TGTTTCAATAAAATGGGCAGATAAGAA 58.189 29.630 0.00 0.00 0.00 2.52
2529 3349 8.359875 TGTTTCAATAAAATGGGCAGATAAGA 57.640 30.769 0.00 0.00 0.00 2.10
2541 3364 8.576442 ACGAAGTCCTTCATGTTTCAATAAAAT 58.424 29.630 7.73 0.00 29.74 1.82
2545 3368 6.816640 CCTACGAAGTCCTTCATGTTTCAATA 59.183 38.462 7.73 0.00 43.93 1.90
2550 3373 3.581332 TCCCTACGAAGTCCTTCATGTTT 59.419 43.478 7.73 0.00 43.93 2.83
2667 3490 8.589338 TGCCTGATGCCTAATTAAAAACTAAAA 58.411 29.630 0.00 0.00 40.16 1.52
2668 3491 8.128322 TGCCTGATGCCTAATTAAAAACTAAA 57.872 30.769 0.00 0.00 40.16 1.85
2669 3492 7.613801 TCTGCCTGATGCCTAATTAAAAACTAA 59.386 33.333 0.00 0.00 40.16 2.24
2671 3494 5.951747 TCTGCCTGATGCCTAATTAAAAACT 59.048 36.000 0.00 0.00 40.16 2.66
2672 3495 6.036470 GTCTGCCTGATGCCTAATTAAAAAC 58.964 40.000 0.00 0.00 40.16 2.43
2708 3568 6.015519 CAGGGACTCAGATATCTAAGGTCAAG 60.016 46.154 22.14 13.26 34.60 3.02
2723 3583 2.175202 AGTAGTTCAGCAGGGACTCAG 58.825 52.381 0.00 0.00 34.60 3.35
2733 3594 8.989980 ACAAAATACTGACTTAAGTAGTTCAGC 58.010 33.333 17.53 2.47 39.36 4.26
2779 3723 8.531982 ACTGTGAAGACTTGCATAGATAAGTAA 58.468 33.333 14.01 0.00 37.27 2.24
2786 3730 5.664457 CCATACTGTGAAGACTTGCATAGA 58.336 41.667 14.01 3.95 0.00 1.98
2807 3758 5.459536 TGTTTTGTAATACTTGCATGCCA 57.540 34.783 16.68 2.49 0.00 4.92
2817 3768 6.394809 CAATGGAACCCCTGTTTTGTAATAC 58.605 40.000 0.00 0.00 33.97 1.89
2912 3870 6.502138 TGGAATGGAGGGAGTAAATGAAATT 58.498 36.000 0.00 0.00 38.98 1.82
2919 3877 9.586732 CAATAATTATGGAATGGAGGGAGTAAA 57.413 33.333 0.00 0.00 0.00 2.01
2931 3889 5.241506 CGCTCCACCACAATAATTATGGAAT 59.758 40.000 6.86 0.00 35.86 3.01
2942 3900 2.671070 CCTCCGCTCCACCACAAT 59.329 61.111 0.00 0.00 0.00 2.71
2947 3905 2.043248 TACTCCCTCCGCTCCACC 60.043 66.667 0.00 0.00 0.00 4.61
2953 3941 4.933505 AAATAGTTACTACTCCCTCCGC 57.066 45.455 0.00 0.00 35.78 5.54
2975 3963 6.715264 GGGTTGAAGAAATAGAAGAACTTGGA 59.285 38.462 0.00 0.00 0.00 3.53
2981 3973 7.238933 TCCCTAAGGGTTGAAGAAATAGAAGAA 59.761 37.037 0.00 0.00 44.74 2.52
3012 4004 9.737427 ACTACTCGAATTCACATAGTGATTAAG 57.263 33.333 6.22 0.74 42.40 1.85
3586 4586 3.434940 AAGGACAATAGGTGTTGGGTC 57.565 47.619 0.00 0.00 41.96 4.46
3590 4590 5.589855 TGCATCATAAGGACAATAGGTGTTG 59.410 40.000 0.00 0.00 41.96 3.33
3634 4642 2.840974 GCTTTTGTAGCGCAGGAGA 58.159 52.632 11.47 0.00 40.71 3.71
3708 4717 6.166982 ACAGAGTAAACATTAGGAGCTTGAC 58.833 40.000 0.00 0.00 0.00 3.18
3720 4933 4.562963 GGAGACCGGAAACAGAGTAAACAT 60.563 45.833 9.46 0.00 0.00 2.71
3736 4949 2.362369 ACATGGAGCCTGGAGACCG 61.362 63.158 0.00 0.00 0.00 4.79
3944 5181 2.299993 TGAAGCTTCTATCACCAGCG 57.700 50.000 26.09 0.00 38.66 5.18
3996 5233 3.350219 TTCCCAATGGTAGAACAGAGC 57.650 47.619 0.00 0.00 0.00 4.09
4147 5400 9.113838 AGATGTGAGGTGTTCATATATTTCAAC 57.886 33.333 0.00 0.00 37.71 3.18
4163 5419 4.529769 TGTTCTTCATGAGAGATGTGAGGT 59.470 41.667 0.00 0.00 35.37 3.85
4165 5421 5.722263 ACTGTTCTTCATGAGAGATGTGAG 58.278 41.667 0.00 0.00 35.37 3.51
4270 5539 4.404715 TCACTTATTTTAGGACGGAGGGAG 59.595 45.833 0.00 0.00 0.00 4.30
4272 5541 4.161754 AGTCACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 33.84 4.30
4273 5542 5.105473 TGAGTCACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 33.84 4.30
4274 5543 5.962433 TGAGTCACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 33.84 4.63
4275 5544 5.988310 TGAGTCACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 33.84 4.69
4276 5545 6.164176 AGTTGAGTCACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 33.84 4.79
4277 5546 7.653767 AAGTTGAGTCACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
4278 5547 8.837389 ACAAAGTTGAGTCACTTATTTTAGGAC 58.163 33.333 0.00 0.00 35.87 3.85
4279 5548 8.974060 ACAAAGTTGAGTCACTTATTTTAGGA 57.026 30.769 0.00 0.00 35.87 2.94
4286 5555 9.436957 CCTTGTATACAAAGTTGAGTCACTTAT 57.563 33.333 18.55 0.00 35.87 1.73
4287 5556 8.426489 ACCTTGTATACAAAGTTGAGTCACTTA 58.574 33.333 18.55 0.00 35.87 2.24
4288 5557 7.280356 ACCTTGTATACAAAGTTGAGTCACTT 58.720 34.615 18.55 0.00 38.74 3.16
4289 5558 6.827727 ACCTTGTATACAAAGTTGAGTCACT 58.172 36.000 18.55 0.00 35.15 3.41
4290 5559 7.492352 AACCTTGTATACAAAGTTGAGTCAC 57.508 36.000 24.95 0.00 38.61 3.67
4291 5560 8.426489 ACTAACCTTGTATACAAAGTTGAGTCA 58.574 33.333 30.11 16.35 39.85 3.41
4292 5561 8.828688 ACTAACCTTGTATACAAAGTTGAGTC 57.171 34.615 30.11 0.00 39.85 3.36
4306 5575 9.918630 GACTCAACTTTGTATACTAACCTTGTA 57.081 33.333 4.17 0.00 0.00 2.41
4307 5576 8.426489 TGACTCAACTTTGTATACTAACCTTGT 58.574 33.333 4.17 0.00 0.00 3.16
4308 5577 8.709646 GTGACTCAACTTTGTATACTAACCTTG 58.290 37.037 4.17 5.64 0.00 3.61
4309 5578 8.648693 AGTGACTCAACTTTGTATACTAACCTT 58.351 33.333 4.17 0.00 0.00 3.50
4310 5579 8.191534 AGTGACTCAACTTTGTATACTAACCT 57.808 34.615 4.17 0.00 0.00 3.50
4311 5580 8.828688 AAGTGACTCAACTTTGTATACTAACC 57.171 34.615 4.17 0.00 37.05 2.85
4320 5589 8.837389 GTCCTAAAATAAGTGACTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
4321 5590 8.009974 CGTCCTAAAATAAGTGACTCAACTTTG 58.990 37.037 0.00 0.00 40.77 2.77
4322 5591 7.172703 CCGTCCTAAAATAAGTGACTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
4323 5592 6.649557 CCGTCCTAAAATAAGTGACTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
4324 5593 6.014840 TCCGTCCTAAAATAAGTGACTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
4325 5594 6.161381 TCCGTCCTAAAATAAGTGACTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
4326 5595 6.349243 TCCGTCCTAAAATAAGTGACTCAA 57.651 37.500 0.00 0.00 0.00 3.02
4327 5596 5.105473 CCTCCGTCCTAAAATAAGTGACTCA 60.105 44.000 0.00 0.00 0.00 3.41
4328 5597 5.349809 CCTCCGTCCTAAAATAAGTGACTC 58.650 45.833 0.00 0.00 0.00 3.36
4329 5598 4.161754 CCCTCCGTCCTAAAATAAGTGACT 59.838 45.833 0.00 0.00 0.00 3.41
4330 5599 4.161001 TCCCTCCGTCCTAAAATAAGTGAC 59.839 45.833 0.00 0.00 0.00 3.67
4331 5600 4.355549 TCCCTCCGTCCTAAAATAAGTGA 58.644 43.478 0.00 0.00 0.00 3.41
4332 5601 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
4333 5602 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
4334 5603 6.667558 ATACTCCCTCCGTCCTAAAATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4335 5604 7.092757 ACAAATACTCCCTCCGTCCTAAAATAA 60.093 37.037 0.00 0.00 0.00 1.40
4336 5605 6.384886 ACAAATACTCCCTCCGTCCTAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
4337 5606 5.191124 ACAAATACTCCCTCCGTCCTAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
4338 5607 4.533311 ACAAATACTCCCTCCGTCCTAAAA 59.467 41.667 0.00 0.00 0.00 1.52
4339 5608 4.098894 ACAAATACTCCCTCCGTCCTAAA 58.901 43.478 0.00 0.00 0.00 1.85
4340 5609 3.703052 GACAAATACTCCCTCCGTCCTAA 59.297 47.826 0.00 0.00 0.00 2.69
4341 5610 3.294214 GACAAATACTCCCTCCGTCCTA 58.706 50.000 0.00 0.00 0.00 2.94
4342 5611 2.108970 GACAAATACTCCCTCCGTCCT 58.891 52.381 0.00 0.00 0.00 3.85
4343 5612 1.829222 TGACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
4344 5613 2.738964 GCTGACAAATACTCCCTCCGTC 60.739 54.545 0.00 0.00 0.00 4.79
4345 5614 1.207329 GCTGACAAATACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
4346 5615 1.802880 CGCTGACAAATACTCCCTCCG 60.803 57.143 0.00 0.00 0.00 4.63
4347 5616 1.941325 CGCTGACAAATACTCCCTCC 58.059 55.000 0.00 0.00 0.00 4.30
4348 5617 1.134670 AGCGCTGACAAATACTCCCTC 60.135 52.381 10.39 0.00 0.00 4.30
4349 5618 0.905357 AGCGCTGACAAATACTCCCT 59.095 50.000 10.39 0.00 0.00 4.20
4350 5619 1.291132 GAGCGCTGACAAATACTCCC 58.709 55.000 18.48 0.00 0.00 4.30
4351 5620 1.929836 CTGAGCGCTGACAAATACTCC 59.070 52.381 18.48 0.00 0.00 3.85
4352 5621 2.346847 CACTGAGCGCTGACAAATACTC 59.653 50.000 18.48 0.00 0.00 2.59
4353 5622 2.029020 TCACTGAGCGCTGACAAATACT 60.029 45.455 18.48 0.00 0.00 2.12
4354 5623 2.337583 TCACTGAGCGCTGACAAATAC 58.662 47.619 18.48 0.00 0.00 1.89
4355 5624 2.741759 TCACTGAGCGCTGACAAATA 57.258 45.000 18.48 0.00 0.00 1.40
4356 5625 1.882912 TTCACTGAGCGCTGACAAAT 58.117 45.000 18.48 0.00 0.00 2.32
4357 5626 1.662517 TTTCACTGAGCGCTGACAAA 58.337 45.000 18.48 3.39 0.00 2.83
4358 5627 1.662517 TTTTCACTGAGCGCTGACAA 58.337 45.000 18.48 2.76 0.00 3.18
4359 5628 1.599071 CTTTTTCACTGAGCGCTGACA 59.401 47.619 18.48 6.64 0.00 3.58
4362 5631 1.869767 ACTCTTTTTCACTGAGCGCTG 59.130 47.619 18.48 3.12 0.00 5.18
4364 5633 1.867233 TCACTCTTTTTCACTGAGCGC 59.133 47.619 0.00 0.00 0.00 5.92
4372 5641 4.127171 GCACAGTAGGTCACTCTTTTTCA 58.873 43.478 0.00 0.00 34.26 2.69
4373 5642 3.498777 GGCACAGTAGGTCACTCTTTTTC 59.501 47.826 0.00 0.00 34.26 2.29
4381 5650 2.200373 AAATGGGCACAGTAGGTCAC 57.800 50.000 0.00 0.00 0.00 3.67
4398 5667 6.383415 AGCGTTGTTTTAGTCTGTTTGAAAA 58.617 32.000 0.00 0.00 0.00 2.29
4405 5674 4.495844 GCTTCAAGCGTTGTTTTAGTCTGT 60.496 41.667 0.00 0.00 0.00 3.41
4452 5721 0.523072 CGTCCAAACAGCCTTCATGG 59.477 55.000 0.00 0.00 39.35 3.66
4472 5742 4.012374 CTGATGGCCACAGTAATTTCACT 58.988 43.478 8.16 0.00 0.00 3.41
4512 5786 0.696501 ACATTTTACTCGTGGGCCCT 59.303 50.000 25.70 4.09 0.00 5.19
4520 5794 4.267690 TCTTGCAGCGATACATTTTACTCG 59.732 41.667 0.00 0.00 0.00 4.18
4525 5800 3.411415 GCTCTTGCAGCGATACATTTT 57.589 42.857 0.00 0.00 38.76 1.82
4560 5835 8.874156 CCTAGCTTGCAATATCTATCCCATATA 58.126 37.037 0.00 0.00 0.00 0.86
4561 5836 7.202167 CCCTAGCTTGCAATATCTATCCCATAT 60.202 40.741 0.00 0.00 0.00 1.78
4562 5837 6.100279 CCCTAGCTTGCAATATCTATCCCATA 59.900 42.308 0.00 0.00 0.00 2.74
4563 5838 5.104193 CCCTAGCTTGCAATATCTATCCCAT 60.104 44.000 0.00 0.00 0.00 4.00
4564 5839 4.225942 CCCTAGCTTGCAATATCTATCCCA 59.774 45.833 0.00 0.00 0.00 4.37
4565 5840 4.775236 CCCTAGCTTGCAATATCTATCCC 58.225 47.826 0.00 0.00 0.00 3.85
4568 5843 4.916041 TGCCCTAGCTTGCAATATCTAT 57.084 40.909 0.00 0.00 40.80 1.98
4569 5844 4.042062 ACATGCCCTAGCTTGCAATATCTA 59.958 41.667 0.00 1.46 45.60 1.98
4570 5845 3.181436 ACATGCCCTAGCTTGCAATATCT 60.181 43.478 0.00 0.19 45.60 1.98
4603 5878 4.615961 ACGCGTTTATATTACGATGAGAGC 59.384 41.667 5.58 0.00 41.33 4.09
4608 5883 7.488537 AGATGTACGCGTTTATATTACGATG 57.511 36.000 20.78 7.39 41.33 3.84
4609 5884 9.778993 ATAAGATGTACGCGTTTATATTACGAT 57.221 29.630 20.78 3.99 41.33 3.73
4610 5885 9.054191 CATAAGATGTACGCGTTTATATTACGA 57.946 33.333 20.78 1.85 41.33 3.43
4611 5886 9.054191 TCATAAGATGTACGCGTTTATATTACG 57.946 33.333 20.78 12.58 41.71 3.18
4613 5888 9.896263 TGTCATAAGATGTACGCGTTTATATTA 57.104 29.630 20.78 19.11 0.00 0.98
4614 5889 8.806177 TGTCATAAGATGTACGCGTTTATATT 57.194 30.769 20.78 17.57 0.00 1.28
4615 5890 8.806177 TTGTCATAAGATGTACGCGTTTATAT 57.194 30.769 20.78 3.46 0.00 0.86
4616 5891 7.916977 ACTTGTCATAAGATGTACGCGTTTATA 59.083 33.333 20.78 0.00 0.00 0.98
4617 5892 6.755141 ACTTGTCATAAGATGTACGCGTTTAT 59.245 34.615 20.78 12.38 0.00 1.40
4618 5893 6.094719 ACTTGTCATAAGATGTACGCGTTTA 58.905 36.000 20.78 10.26 0.00 2.01
4619 5894 4.927425 ACTTGTCATAAGATGTACGCGTTT 59.073 37.500 20.78 7.88 0.00 3.60
4620 5895 4.491676 ACTTGTCATAAGATGTACGCGTT 58.508 39.130 20.78 0.00 0.00 4.84
4621 5896 4.103357 GACTTGTCATAAGATGTACGCGT 58.897 43.478 19.17 19.17 0.00 6.01
4622 5897 4.027621 GTGACTTGTCATAAGATGTACGCG 60.028 45.833 3.53 3.53 0.00 6.01
4632 5907 8.824756 AAGAGTATCCTAGTGACTTGTCATAA 57.175 34.615 6.74 0.00 33.66 1.90
4640 5915 5.821995 GGACGTTAAGAGTATCCTAGTGACT 59.178 44.000 0.00 0.00 33.66 3.41
4682 5988 4.501071 GTTAGAATCGGTTCTGTTAGCCA 58.499 43.478 21.25 0.00 44.27 4.75
4756 6083 3.676324 CGATTTAGCCTTCCTCGTGACTT 60.676 47.826 0.00 0.00 0.00 3.01
4788 6115 9.839817 TGAAAAACCGTTCTGGATATATTATCA 57.160 29.630 0.00 0.00 42.00 2.15
4938 6267 3.564225 CACAGTAGTTGTTCCTTTGGACC 59.436 47.826 0.00 0.00 38.16 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.