Multiple sequence alignment - TraesCS1B01G290600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G290600 chr1B 100.000 9336 0 0 1 9336 507856621 507847286 0.000000e+00 17241.0
1 TraesCS1B01G290600 chr1B 100.000 47 0 0 7005 7051 507849570 507849524 4.640000e-13 87.9
2 TraesCS1B01G290600 chr1B 100.000 47 0 0 7052 7098 507849617 507849571 4.640000e-13 87.9
3 TraesCS1B01G290600 chr1D 97.154 4216 73 15 2851 7051 379143308 379139125 0.000000e+00 7077.0
4 TraesCS1B01G290600 chr1D 90.240 1916 111 32 539 2415 379145870 379143992 0.000000e+00 2433.0
5 TraesCS1B01G290600 chr1D 93.780 836 20 7 7052 7861 379139171 379138342 0.000000e+00 1227.0
6 TraesCS1B01G290600 chr1D 93.909 591 20 4 8024 8612 379138187 379137611 0.000000e+00 878.0
7 TraesCS1B01G290600 chr1D 98.821 424 2 2 2418 2840 379143930 379143509 0.000000e+00 752.0
8 TraesCS1B01G290600 chr1D 91.667 396 28 2 8611 9005 379137507 379137116 2.290000e-150 544.0
9 TraesCS1B01G290600 chr1D 89.399 283 29 1 2 283 379146307 379146025 1.150000e-93 355.0
10 TraesCS1B01G290600 chr1D 93.333 150 10 0 4725 4874 246650130 246649981 1.220000e-53 222.0
11 TraesCS1B01G290600 chr1D 90.654 107 10 0 6156 6262 128530422 128530316 9.770000e-30 143.0
12 TraesCS1B01G290600 chr1A 97.244 2395 36 13 2851 5230 479838121 479835742 0.000000e+00 4030.0
13 TraesCS1B01G290600 chr1A 92.311 2185 98 17 7062 9212 479829258 479827110 0.000000e+00 3040.0
14 TraesCS1B01G290600 chr1A 93.084 1605 53 24 837 2415 479840378 479838806 0.000000e+00 2296.0
15 TraesCS1B01G290600 chr1A 96.912 842 23 3 5387 6228 479831102 479830264 0.000000e+00 1408.0
16 TraesCS1B01G290600 chr1A 98.691 611 8 0 6376 6986 479829876 479829266 0.000000e+00 1085.0
17 TraesCS1B01G290600 chr1A 99.057 424 4 0 2417 2840 479838745 479838322 0.000000e+00 761.0
18 TraesCS1B01G290600 chr1A 98.387 124 1 1 5228 5351 479831218 479831096 5.680000e-52 217.0
19 TraesCS1B01G290600 chr1A 85.549 173 13 6 539 701 479840923 479840753 4.480000e-38 171.0
20 TraesCS1B01G290600 chr1A 91.589 107 9 0 6156 6262 188150953 188150847 2.100000e-31 148.0
21 TraesCS1B01G290600 chr1A 91.262 103 8 1 6160 6262 585843050 585843151 1.260000e-28 139.0
22 TraesCS1B01G290600 chr1A 89.091 110 11 1 6154 6262 188149102 188148993 1.640000e-27 135.0
23 TraesCS1B01G290600 chr1A 100.000 45 0 0 6336 6380 479830264 479830220 6.010000e-12 84.2
24 TraesCS1B01G290600 chr5D 84.021 582 76 8 6400 6977 43175659 43175091 2.290000e-150 544.0
25 TraesCS1B01G290600 chr2B 85.276 326 35 6 6400 6713 249532719 249532395 3.250000e-84 324.0
26 TraesCS1B01G290600 chr2A 93.548 155 9 1 4719 4872 612845807 612845961 7.290000e-56 230.0
27 TraesCS1B01G290600 chr4B 92.903 155 11 0 4725 4879 146469365 146469211 9.430000e-55 226.0
28 TraesCS1B01G290600 chr4B 92.308 156 12 0 4720 4875 438375335 438375180 1.220000e-53 222.0
29 TraesCS1B01G290600 chr7B 91.772 158 13 0 4717 4874 44939711 44939554 4.390000e-53 220.0
30 TraesCS1B01G290600 chr4A 91.667 156 13 0 4720 4875 109850053 109850208 5.680000e-52 217.0
31 TraesCS1B01G290600 chr2D 92.667 150 11 0 4725 4874 79056316 79056167 5.680000e-52 217.0
32 TraesCS1B01G290600 chr2D 90.654 107 10 0 6156 6262 141479472 141479578 9.770000e-30 143.0
33 TraesCS1B01G290600 chr3A 79.012 243 49 2 2456 2697 611966608 611966849 2.090000e-36 165.0
34 TraesCS1B01G290600 chr3D 91.667 108 9 0 6155 6262 450875185 450875292 5.840000e-32 150.0
35 TraesCS1B01G290600 chr6A 89.720 107 11 0 6156 6262 465228921 465229027 4.550000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G290600 chr1B 507847286 507856621 9335 True 17241.000000 17241 100.000000 1 9336 1 chr1B.!!$R1 9335
1 TraesCS1B01G290600 chr1D 379137116 379146307 9191 True 1895.142857 7077 93.567143 2 9005 7 chr1D.!!$R3 9003
2 TraesCS1B01G290600 chr1A 479835742 479840923 5181 True 1814.500000 4030 93.733500 539 5230 4 chr1A.!!$R3 4691
3 TraesCS1B01G290600 chr1A 479827110 479831218 4108 True 1166.840000 3040 97.260200 5228 9212 5 chr1A.!!$R2 3984
4 TraesCS1B01G290600 chr5D 43175091 43175659 568 True 544.000000 544 84.021000 6400 6977 1 chr5D.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 439 0.034670 GTCCCTCAAGGCAGCTGAAT 60.035 55.000 20.43 0.61 34.51 2.57 F
440 442 0.034767 CCTCAAGGCAGCTGAATCCA 60.035 55.000 20.43 0.00 0.00 3.41 F
468 470 0.107017 TAAGGGGCAGCAGCTGAATC 60.107 55.000 27.39 13.69 41.70 2.52 F
1234 1617 0.463833 GGATGAATGGTCACGGGGAC 60.464 60.000 0.57 0.57 46.20 4.46 F
2044 2467 0.835276 CACAGATGGAGCTGGATGGA 59.165 55.000 0.00 0.00 40.20 3.41 F
2050 2473 1.821332 GGAGCTGGATGGAAAGGCG 60.821 63.158 0.00 0.00 0.00 5.52 F
2848 3331 4.794248 TTGCGCATCATATACTTCACAC 57.206 40.909 12.75 0.00 0.00 3.82 F
3352 4035 2.673368 CAGTCCATACTGTCTTTTCGCC 59.327 50.000 0.00 0.00 46.76 5.54 F
4876 5562 1.139095 GTGAACGGAGGGAGTAGCG 59.861 63.158 0.00 0.00 0.00 4.26 F
5159 5846 0.473755 TGAGCCTCAAAAGCTGGTGA 59.526 50.000 0.00 0.00 41.75 4.02 F
6254 6946 0.038892 GACAAGTAACTCCGGACGCA 60.039 55.000 0.00 0.00 0.00 5.24 F
6268 6960 1.202545 GGACGCAGGGAGTATTTCCTC 60.203 57.143 0.00 0.00 45.98 3.71 F
6501 7550 2.238646 TGTGAGGTTTGGTTCAGTCAGT 59.761 45.455 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 2115 1.358152 CCAAGGTAACAGGGACCAGA 58.642 55.000 0.00 0.0 39.65 3.86 R
2120 2543 1.453155 AGTAAAGTTGATGCCAGGCG 58.547 50.000 7.03 0.0 0.00 5.52 R
2223 2646 3.818773 TGTCGAAGTCACTATCTGTCACA 59.181 43.478 0.00 0.0 0.00 3.58 R
2996 3669 3.489355 ACAGAAATGCACATCCACTTCA 58.511 40.909 0.00 0.0 0.00 3.02 R
3239 3921 1.156736 CCATTTCACGGACACTGGTC 58.843 55.000 0.00 0.0 43.55 4.02 R
3332 4015 2.354805 GGGCGAAAAGACAGTATGGACT 60.355 50.000 0.00 0.0 43.62 3.85 R
4141 4825 7.114866 AGGAAGCTACTACATAGGAAAAGAC 57.885 40.000 0.00 0.0 0.00 3.01 R
5060 5746 0.324943 CCCAGATTGGTCGAGTTGGT 59.675 55.000 0.00 0.0 35.17 3.67 R
5965 6656 1.372501 ATACACTGCCAGGAAACCCT 58.627 50.000 0.00 0.0 0.00 4.34 R
6589 7641 1.594194 CTTTATGCGCAACAGGCCCA 61.594 55.000 17.11 0.0 40.31 5.36 R
7382 8434 5.823209 TTGAAGATACAGCAATGGACATG 57.177 39.130 0.00 0.0 0.00 3.21 R
7612 8689 6.584471 TTGCAGTCCCCTAAATTCCTATAA 57.416 37.500 0.00 0.0 0.00 0.98 R
8414 9600 1.608590 CCACGCCATTTTCTGAACAGT 59.391 47.619 1.73 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.537874 CCCGCTAACCGCCTAGCT 61.538 66.667 10.97 0.00 41.86 3.32
41 42 2.499685 CCGCTAACCGCCTAGCTT 59.500 61.111 10.97 0.00 41.86 3.74
43 44 1.944676 CGCTAACCGCCTAGCTTCG 60.945 63.158 10.97 0.00 41.86 3.79
61 62 2.887568 CATCAGTCGAGGGCACGC 60.888 66.667 0.00 0.00 0.00 5.34
87 88 3.364549 CCCATTGTAGGAGATGCCAAAA 58.635 45.455 0.00 0.00 40.02 2.44
94 95 4.941263 TGTAGGAGATGCCAAAATACACAC 59.059 41.667 0.00 0.00 40.02 3.82
105 106 5.519722 CCAAAATACACACTGAGGTTCAAC 58.480 41.667 0.00 0.00 0.00 3.18
109 110 0.947244 CACACTGAGGTTCAACCAGC 59.053 55.000 9.90 0.42 41.95 4.85
116 117 0.603975 AGGTTCAACCAGCTTCGCTC 60.604 55.000 9.90 0.00 41.95 5.03
162 163 5.567224 CATGGGCATGTTGAACACTTATGTT 60.567 40.000 0.00 0.00 41.51 2.71
175 177 1.745087 CTTATGTTGTGCCCTTGCGAT 59.255 47.619 0.00 0.00 41.78 4.58
177 179 2.126346 GTTGTGCCCTTGCGATGC 60.126 61.111 0.00 0.00 41.78 3.91
178 180 3.372730 TTGTGCCCTTGCGATGCC 61.373 61.111 0.00 0.00 41.78 4.40
181 183 2.362760 TGCCCTTGCGATGCCAAT 60.363 55.556 0.00 0.00 41.78 3.16
185 187 0.819582 CCCTTGCGATGCCAATTTCT 59.180 50.000 0.00 0.00 0.00 2.52
201 203 5.258622 CAATTTCTTTATGAAGCCGACGAG 58.741 41.667 0.00 0.00 35.89 4.18
202 204 3.587797 TTCTTTATGAAGCCGACGAGT 57.412 42.857 0.00 0.00 32.75 4.18
205 207 0.530744 TTATGAAGCCGACGAGTGCT 59.469 50.000 0.00 0.00 40.17 4.40
213 215 0.784778 CCGACGAGTGCTGTCTTTTC 59.215 55.000 0.00 0.00 34.17 2.29
215 217 1.149148 GACGAGTGCTGTCTTTTCCC 58.851 55.000 0.00 0.00 33.54 3.97
216 218 0.468226 ACGAGTGCTGTCTTTTCCCA 59.532 50.000 0.00 0.00 0.00 4.37
233 235 0.248743 CCACATGTGCCGATCAATGC 60.249 55.000 20.81 0.00 0.00 3.56
258 260 3.839293 CAAGGAAGTTGAGACCGTAGAG 58.161 50.000 0.00 0.00 38.60 2.43
261 263 2.416162 GGAAGTTGAGACCGTAGAGCAG 60.416 54.545 0.00 0.00 0.00 4.24
282 284 0.676782 ACGCCCCATGCTTTGACTAC 60.677 55.000 0.00 0.00 38.05 2.73
283 285 0.392998 CGCCCCATGCTTTGACTACT 60.393 55.000 0.00 0.00 38.05 2.57
284 286 1.134521 CGCCCCATGCTTTGACTACTA 60.135 52.381 0.00 0.00 38.05 1.82
285 287 2.565841 GCCCCATGCTTTGACTACTAG 58.434 52.381 0.00 0.00 36.87 2.57
286 288 2.565841 CCCCATGCTTTGACTACTAGC 58.434 52.381 0.00 0.00 35.50 3.42
287 289 2.205074 CCCATGCTTTGACTACTAGCG 58.795 52.381 0.00 0.00 37.73 4.26
288 290 2.205074 CCATGCTTTGACTACTAGCGG 58.795 52.381 0.00 0.00 37.73 5.52
289 291 2.205074 CATGCTTTGACTACTAGCGGG 58.795 52.381 0.00 0.00 37.73 6.13
290 292 1.552578 TGCTTTGACTACTAGCGGGA 58.447 50.000 0.00 0.00 37.73 5.14
291 293 1.203994 TGCTTTGACTACTAGCGGGAC 59.796 52.381 0.00 0.00 37.73 4.46
292 294 1.477295 GCTTTGACTACTAGCGGGACT 59.523 52.381 0.00 0.00 0.00 3.85
293 295 2.735762 GCTTTGACTACTAGCGGGACTG 60.736 54.545 0.00 0.00 0.00 3.51
294 296 1.471119 TTGACTACTAGCGGGACTGG 58.529 55.000 0.00 0.00 0.00 4.00
295 297 0.330604 TGACTACTAGCGGGACTGGT 59.669 55.000 0.00 0.00 43.49 4.00
296 298 1.561076 TGACTACTAGCGGGACTGGTA 59.439 52.381 0.00 0.00 41.03 3.25
297 299 2.025981 TGACTACTAGCGGGACTGGTAA 60.026 50.000 0.00 0.00 41.31 2.85
298 300 2.617774 GACTACTAGCGGGACTGGTAAG 59.382 54.545 0.00 0.00 41.31 2.34
299 301 1.955080 CTACTAGCGGGACTGGTAAGG 59.045 57.143 0.00 0.00 41.31 2.69
300 302 1.328430 ACTAGCGGGACTGGTAAGGC 61.328 60.000 0.00 0.00 38.52 4.35
301 303 2.351336 CTAGCGGGACTGGTAAGGCG 62.351 65.000 0.00 0.00 28.70 5.52
302 304 4.078516 GCGGGACTGGTAAGGCGT 62.079 66.667 0.00 0.00 28.70 5.68
303 305 2.125673 CGGGACTGGTAAGGCGTG 60.126 66.667 0.00 0.00 28.70 5.34
304 306 2.939261 CGGGACTGGTAAGGCGTGT 61.939 63.158 0.00 0.00 28.70 4.49
305 307 1.373812 GGGACTGGTAAGGCGTGTT 59.626 57.895 0.00 0.00 28.70 3.32
306 308 0.953960 GGGACTGGTAAGGCGTGTTG 60.954 60.000 0.00 0.00 28.70 3.33
307 309 0.953960 GGACTGGTAAGGCGTGTTGG 60.954 60.000 0.00 0.00 28.70 3.77
308 310 1.574702 GACTGGTAAGGCGTGTTGGC 61.575 60.000 0.00 0.00 45.27 4.52
316 318 4.268939 GCGTGTTGGCAGCAGCAA 62.269 61.111 3.59 0.00 44.61 3.91
317 319 2.646719 CGTGTTGGCAGCAGCAAT 59.353 55.556 3.59 0.00 44.61 3.56
318 320 1.731613 CGTGTTGGCAGCAGCAATG 60.732 57.895 3.59 0.00 44.61 2.82
319 321 2.025418 GTGTTGGCAGCAGCAATGC 61.025 57.895 3.59 0.00 44.61 3.56
320 322 2.807895 GTTGGCAGCAGCAATGCG 60.808 61.111 2.65 0.00 44.80 4.73
321 323 4.058732 TTGGCAGCAGCAATGCGG 62.059 61.111 2.65 0.00 44.80 5.69
331 333 4.812476 CAATGCGGCCCTCGTCGA 62.812 66.667 0.00 0.00 41.72 4.20
332 334 4.077184 AATGCGGCCCTCGTCGAA 62.077 61.111 0.00 0.00 41.72 3.71
333 335 4.514577 ATGCGGCCCTCGTCGAAG 62.515 66.667 0.00 0.00 41.72 3.79
335 337 4.736896 GCGGCCCTCGTCGAAGTT 62.737 66.667 0.00 0.00 41.72 2.66
336 338 2.809601 CGGCCCTCGTCGAAGTTG 60.810 66.667 0.00 0.00 0.00 3.16
337 339 2.434359 GGCCCTCGTCGAAGTTGG 60.434 66.667 0.00 1.64 0.00 3.77
338 340 2.434359 GCCCTCGTCGAAGTTGGG 60.434 66.667 20.59 20.59 40.74 4.12
339 341 2.264794 CCCTCGTCGAAGTTGGGG 59.735 66.667 18.45 14.64 34.46 4.96
340 342 2.434359 CCTCGTCGAAGTTGGGGC 60.434 66.667 0.00 0.00 0.00 5.80
341 343 2.809601 CTCGTCGAAGTTGGGGCG 60.810 66.667 0.00 0.00 0.00 6.13
342 344 4.367023 TCGTCGAAGTTGGGGCGG 62.367 66.667 0.00 0.00 0.00 6.13
344 346 4.011517 GTCGAAGTTGGGGCGGGA 62.012 66.667 0.00 0.00 0.00 5.14
345 347 3.702048 TCGAAGTTGGGGCGGGAG 61.702 66.667 0.00 0.00 0.00 4.30
346 348 4.778143 CGAAGTTGGGGCGGGAGG 62.778 72.222 0.00 0.00 0.00 4.30
347 349 4.426313 GAAGTTGGGGCGGGAGGG 62.426 72.222 0.00 0.00 0.00 4.30
348 350 4.995058 AAGTTGGGGCGGGAGGGA 62.995 66.667 0.00 0.00 0.00 4.20
354 356 4.576374 GGGCGGGAGGGAGGGTAT 62.576 72.222 0.00 0.00 0.00 2.73
355 357 2.447959 GGCGGGAGGGAGGGTATT 60.448 66.667 0.00 0.00 0.00 1.89
356 358 2.517798 GGCGGGAGGGAGGGTATTC 61.518 68.421 0.00 0.00 0.00 1.75
357 359 1.764854 GCGGGAGGGAGGGTATTCA 60.765 63.158 0.00 0.00 0.00 2.57
358 360 2.041206 GCGGGAGGGAGGGTATTCAC 62.041 65.000 0.00 0.00 0.00 3.18
359 361 0.689745 CGGGAGGGAGGGTATTCACA 60.690 60.000 0.00 0.00 0.00 3.58
360 362 1.591768 GGGAGGGAGGGTATTCACAA 58.408 55.000 0.00 0.00 0.00 3.33
361 363 1.490910 GGGAGGGAGGGTATTCACAAG 59.509 57.143 0.00 0.00 0.00 3.16
362 364 2.197465 GGAGGGAGGGTATTCACAAGT 58.803 52.381 0.00 0.00 0.00 3.16
363 365 2.092914 GGAGGGAGGGTATTCACAAGTG 60.093 54.545 0.00 0.00 0.00 3.16
364 366 1.916181 AGGGAGGGTATTCACAAGTGG 59.084 52.381 0.00 0.00 0.00 4.00
365 367 1.913419 GGGAGGGTATTCACAAGTGGA 59.087 52.381 0.00 0.00 0.00 4.02
366 368 2.509964 GGGAGGGTATTCACAAGTGGAT 59.490 50.000 0.00 0.00 32.57 3.41
367 369 3.433740 GGGAGGGTATTCACAAGTGGATC 60.434 52.174 0.00 0.00 30.04 3.36
368 370 3.199946 GGAGGGTATTCACAAGTGGATCA 59.800 47.826 0.00 0.00 30.04 2.92
369 371 4.324254 GGAGGGTATTCACAAGTGGATCAA 60.324 45.833 0.00 0.00 30.04 2.57
370 372 4.848357 AGGGTATTCACAAGTGGATCAAG 58.152 43.478 0.00 0.00 30.04 3.02
371 373 3.947834 GGGTATTCACAAGTGGATCAAGG 59.052 47.826 0.00 0.00 30.04 3.61
372 374 4.324254 GGGTATTCACAAGTGGATCAAGGA 60.324 45.833 0.00 0.00 30.04 3.36
373 375 5.440610 GGTATTCACAAGTGGATCAAGGAT 58.559 41.667 0.00 0.00 30.04 3.24
374 376 6.409234 GGGTATTCACAAGTGGATCAAGGATA 60.409 42.308 0.00 0.00 30.04 2.59
375 377 7.054124 GGTATTCACAAGTGGATCAAGGATAA 58.946 38.462 0.00 0.00 30.04 1.75
376 378 7.227512 GGTATTCACAAGTGGATCAAGGATAAG 59.772 40.741 0.00 0.00 30.04 1.73
377 379 5.762179 TCACAAGTGGATCAAGGATAAGT 57.238 39.130 0.00 0.00 0.00 2.24
378 380 6.867519 TCACAAGTGGATCAAGGATAAGTA 57.132 37.500 0.00 0.00 0.00 2.24
379 381 6.878317 TCACAAGTGGATCAAGGATAAGTAG 58.122 40.000 0.00 0.00 0.00 2.57
380 382 6.667848 TCACAAGTGGATCAAGGATAAGTAGA 59.332 38.462 0.00 0.00 0.00 2.59
381 383 6.983307 CACAAGTGGATCAAGGATAAGTAGAG 59.017 42.308 0.00 0.00 0.00 2.43
382 384 6.098982 ACAAGTGGATCAAGGATAAGTAGAGG 59.901 42.308 0.00 0.00 0.00 3.69
383 385 5.151454 AGTGGATCAAGGATAAGTAGAGGG 58.849 45.833 0.00 0.00 0.00 4.30
384 386 3.904339 TGGATCAAGGATAAGTAGAGGGC 59.096 47.826 0.00 0.00 0.00 5.19
385 387 3.056465 GGATCAAGGATAAGTAGAGGGCG 60.056 52.174 0.00 0.00 0.00 6.13
386 388 2.317040 TCAAGGATAAGTAGAGGGCGG 58.683 52.381 0.00 0.00 0.00 6.13
387 389 2.091499 TCAAGGATAAGTAGAGGGCGGA 60.091 50.000 0.00 0.00 0.00 5.54
388 390 2.296073 AGGATAAGTAGAGGGCGGAG 57.704 55.000 0.00 0.00 0.00 4.63
389 391 1.499870 AGGATAAGTAGAGGGCGGAGT 59.500 52.381 0.00 0.00 0.00 3.85
390 392 1.614413 GGATAAGTAGAGGGCGGAGTG 59.386 57.143 0.00 0.00 0.00 3.51
391 393 1.614413 GATAAGTAGAGGGCGGAGTGG 59.386 57.143 0.00 0.00 0.00 4.00
392 394 1.041447 TAAGTAGAGGGCGGAGTGGC 61.041 60.000 0.00 0.00 43.88 5.01
393 395 4.208686 GTAGAGGGCGGAGTGGCG 62.209 72.222 0.00 0.00 46.04 5.69
399 401 4.874977 GGCGGAGTGGCGCTAGTC 62.875 72.222 19.43 19.43 0.00 2.59
401 403 4.554363 CGGAGTGGCGCTAGTCGG 62.554 72.222 20.60 19.78 38.94 4.79
410 412 4.310672 GCTAGTCGGCGATGACAG 57.689 61.111 14.79 9.15 41.41 3.51
411 413 1.946650 GCTAGTCGGCGATGACAGC 60.947 63.158 14.79 15.29 41.41 4.40
418 420 2.279517 GCGATGACAGCCTACGGG 60.280 66.667 0.00 0.00 0.00 5.28
419 421 3.077519 GCGATGACAGCCTACGGGT 62.078 63.158 0.00 0.00 34.45 5.28
420 422 1.065928 CGATGACAGCCTACGGGTC 59.934 63.158 0.00 0.00 34.45 4.46
421 423 1.442148 GATGACAGCCTACGGGTCC 59.558 63.158 0.00 0.00 34.45 4.46
422 424 2.029307 GATGACAGCCTACGGGTCCC 62.029 65.000 0.00 0.00 34.45 4.46
423 425 2.363925 GACAGCCTACGGGTCCCT 60.364 66.667 6.29 0.00 34.45 4.20
424 426 2.363925 ACAGCCTACGGGTCCCTC 60.364 66.667 6.29 0.00 34.45 4.30
425 427 2.363795 CAGCCTACGGGTCCCTCA 60.364 66.667 6.29 0.00 34.45 3.86
426 428 1.987855 CAGCCTACGGGTCCCTCAA 60.988 63.158 6.29 0.00 34.45 3.02
427 429 1.686110 AGCCTACGGGTCCCTCAAG 60.686 63.158 6.29 0.15 34.45 3.02
428 430 2.732619 GCCTACGGGTCCCTCAAGG 61.733 68.421 6.29 10.67 34.45 3.61
429 431 2.732619 CCTACGGGTCCCTCAAGGC 61.733 68.421 6.29 0.00 34.51 4.35
430 432 1.987855 CTACGGGTCCCTCAAGGCA 60.988 63.158 6.29 0.00 34.51 4.75
431 433 1.961180 CTACGGGTCCCTCAAGGCAG 61.961 65.000 6.29 0.00 34.51 4.85
432 434 4.785453 CGGGTCCCTCAAGGCAGC 62.785 72.222 6.29 0.00 34.51 5.25
433 435 3.334054 GGGTCCCTCAAGGCAGCT 61.334 66.667 0.00 0.00 34.51 4.24
434 436 2.045536 GGTCCCTCAAGGCAGCTG 60.046 66.667 10.11 10.11 34.51 4.24
435 437 2.596851 GGTCCCTCAAGGCAGCTGA 61.597 63.158 20.43 0.00 34.51 4.26
436 438 1.376466 GTCCCTCAAGGCAGCTGAA 59.624 57.895 20.43 0.00 34.51 3.02
437 439 0.034670 GTCCCTCAAGGCAGCTGAAT 60.035 55.000 20.43 0.61 34.51 2.57
438 440 0.254178 TCCCTCAAGGCAGCTGAATC 59.746 55.000 20.43 5.94 34.51 2.52
439 441 0.750911 CCCTCAAGGCAGCTGAATCC 60.751 60.000 20.43 9.57 0.00 3.01
440 442 0.034767 CCTCAAGGCAGCTGAATCCA 60.035 55.000 20.43 0.00 0.00 3.41
441 443 1.380524 CTCAAGGCAGCTGAATCCAG 58.619 55.000 20.43 6.45 43.22 3.86
442 444 0.694771 TCAAGGCAGCTGAATCCAGT 59.305 50.000 20.43 0.00 42.35 4.00
443 445 1.074405 TCAAGGCAGCTGAATCCAGTT 59.926 47.619 20.43 0.00 42.35 3.16
444 446 1.891150 CAAGGCAGCTGAATCCAGTTT 59.109 47.619 20.43 0.00 42.35 2.66
445 447 2.298163 CAAGGCAGCTGAATCCAGTTTT 59.702 45.455 20.43 0.00 42.35 2.43
446 448 2.601905 AGGCAGCTGAATCCAGTTTTT 58.398 42.857 20.43 0.00 42.35 1.94
463 465 3.455737 TTTTTAAGGGGCAGCAGCT 57.544 47.368 0.00 0.00 41.70 4.24
464 466 0.968405 TTTTTAAGGGGCAGCAGCTG 59.032 50.000 18.93 18.93 41.70 4.24
465 467 0.112218 TTTTAAGGGGCAGCAGCTGA 59.888 50.000 27.39 0.06 41.70 4.26
466 468 0.112218 TTTAAGGGGCAGCAGCTGAA 59.888 50.000 27.39 7.24 41.70 3.02
467 469 0.332632 TTAAGGGGCAGCAGCTGAAT 59.667 50.000 27.39 8.63 41.70 2.57
468 470 0.107017 TAAGGGGCAGCAGCTGAATC 60.107 55.000 27.39 13.69 41.70 2.52
469 471 2.832201 GGGGCAGCAGCTGAATCC 60.832 66.667 27.39 21.15 41.70 3.01
470 472 2.044650 GGGCAGCAGCTGAATCCA 60.045 61.111 27.39 0.00 41.70 3.41
471 473 2.119655 GGGCAGCAGCTGAATCCAG 61.120 63.158 27.39 0.00 43.22 3.86
472 474 1.378250 GGCAGCAGCTGAATCCAGT 60.378 57.895 27.39 0.00 42.35 4.00
473 475 0.964358 GGCAGCAGCTGAATCCAGTT 60.964 55.000 27.39 0.00 42.35 3.16
484 486 4.887957 TCCAGTTGGGATCGTCCT 57.112 55.556 0.00 0.00 42.15 3.85
485 487 3.082619 TCCAGTTGGGATCGTCCTT 57.917 52.632 0.00 0.00 42.15 3.36
486 488 1.358152 TCCAGTTGGGATCGTCCTTT 58.642 50.000 0.00 0.00 42.15 3.11
487 489 1.702957 TCCAGTTGGGATCGTCCTTTT 59.297 47.619 0.00 0.00 42.15 2.27
488 490 2.084546 CCAGTTGGGATCGTCCTTTTC 58.915 52.381 4.41 0.00 40.01 2.29
489 491 2.084546 CAGTTGGGATCGTCCTTTTCC 58.915 52.381 4.41 0.00 36.57 3.13
491 493 4.534401 GGGATCGTCCTTTTCCCG 57.466 61.111 4.41 0.00 39.80 5.14
492 494 1.153229 GGGATCGTCCTTTTCCCGG 60.153 63.158 0.00 0.00 39.80 5.73
493 495 1.600638 GGATCGTCCTTTTCCCGGT 59.399 57.895 0.00 0.00 32.53 5.28
494 496 0.743345 GGATCGTCCTTTTCCCGGTG 60.743 60.000 0.00 0.00 32.53 4.94
495 497 1.366854 GATCGTCCTTTTCCCGGTGC 61.367 60.000 0.00 0.00 0.00 5.01
496 498 2.814913 ATCGTCCTTTTCCCGGTGCC 62.815 60.000 0.00 0.00 0.00 5.01
515 517 3.268334 TGCCCCAAACATGTCTATAGGTT 59.732 43.478 0.00 0.00 0.00 3.50
516 518 3.883489 GCCCCAAACATGTCTATAGGTTC 59.117 47.826 0.00 0.00 0.00 3.62
517 519 4.385310 GCCCCAAACATGTCTATAGGTTCT 60.385 45.833 0.00 0.00 0.00 3.01
518 520 5.163237 GCCCCAAACATGTCTATAGGTTCTA 60.163 44.000 0.00 0.00 0.00 2.10
519 521 6.525629 CCCCAAACATGTCTATAGGTTCTAG 58.474 44.000 0.00 0.00 0.00 2.43
520 522 6.326583 CCCCAAACATGTCTATAGGTTCTAGA 59.673 42.308 0.00 0.00 0.00 2.43
521 523 7.016661 CCCCAAACATGTCTATAGGTTCTAGAT 59.983 40.741 0.00 0.00 0.00 1.98
522 524 8.432805 CCCAAACATGTCTATAGGTTCTAGATT 58.567 37.037 0.00 0.00 0.00 2.40
528 530 9.509855 CATGTCTATAGGTTCTAGATTAATCGC 57.490 37.037 9.78 0.29 0.00 4.58
530 532 7.605309 TGTCTATAGGTTCTAGATTAATCGCGA 59.395 37.037 13.09 13.09 0.00 5.87
531 533 8.614346 GTCTATAGGTTCTAGATTAATCGCGAT 58.386 37.037 17.62 17.62 0.00 4.58
532 534 9.828039 TCTATAGGTTCTAGATTAATCGCGATA 57.172 33.333 24.00 8.23 0.00 2.92
535 537 7.870588 AGGTTCTAGATTAATCGCGATAAAC 57.129 36.000 24.00 12.81 0.00 2.01
536 538 7.431249 AGGTTCTAGATTAATCGCGATAAACA 58.569 34.615 24.00 6.97 0.00 2.83
537 539 7.924412 AGGTTCTAGATTAATCGCGATAAACAA 59.076 33.333 24.00 14.10 0.00 2.83
549 665 3.120649 GCGATAAACAAGTGTCAGGTGTC 60.121 47.826 0.00 0.00 0.00 3.67
617 742 3.443329 CCATCTCTCGGTCAGGAGATATG 59.557 52.174 9.64 9.64 44.47 1.78
643 768 1.274447 GCGACCTACCAAACCTGTAGT 59.726 52.381 0.00 0.00 35.06 2.73
644 769 2.493278 GCGACCTACCAAACCTGTAGTA 59.507 50.000 0.00 0.00 35.06 1.82
645 770 3.428589 GCGACCTACCAAACCTGTAGTAG 60.429 52.174 0.00 0.00 35.06 2.57
690 833 3.210528 ACGAGAGATCGGACGGCC 61.211 66.667 0.00 0.00 37.45 6.13
691 834 3.209812 CGAGAGATCGGACGGCCA 61.210 66.667 8.76 0.00 0.00 5.36
930 1307 7.124901 AGGAAAATACACTGCAGATAAGAGAGA 59.875 37.037 23.35 0.00 0.00 3.10
931 1308 7.437862 GGAAAATACACTGCAGATAAGAGAGAG 59.562 40.741 23.35 0.00 0.00 3.20
1206 1589 4.915667 TGTAGAGTTCTCGTGATTTGTTCG 59.084 41.667 0.00 0.00 0.00 3.95
1232 1615 1.128200 TAGGATGAATGGTCACGGGG 58.872 55.000 0.00 0.00 36.31 5.73
1233 1616 0.620410 AGGATGAATGGTCACGGGGA 60.620 55.000 0.00 0.00 36.31 4.81
1234 1617 0.463833 GGATGAATGGTCACGGGGAC 60.464 60.000 0.57 0.57 46.20 4.46
1276 1665 3.847081 CCTGGGGTTTGGGTTTTAACTA 58.153 45.455 0.00 0.00 0.00 2.24
1277 1666 4.422057 CCTGGGGTTTGGGTTTTAACTAT 58.578 43.478 0.00 0.00 0.00 2.12
1302 1691 1.868997 CGTTGATGGCAGCGTTCTT 59.131 52.632 0.00 0.00 42.71 2.52
1308 1697 1.063174 GATGGCAGCGTTCTTGTCATC 59.937 52.381 4.34 4.34 0.00 2.92
1324 1713 8.463930 TCTTGTCATCAATAAACTTTTGAGGT 57.536 30.769 0.00 0.00 36.53 3.85
1460 1849 3.788142 AGGCAGAGAGGAATTTTGGGATA 59.212 43.478 0.00 0.00 0.00 2.59
1501 1890 1.134759 GGGAGGACCTCTTTAGTTCGC 60.135 57.143 20.97 0.93 35.85 4.70
1511 1900 5.411669 ACCTCTTTAGTTCGCGAATTCATTT 59.588 36.000 26.23 9.15 0.00 2.32
1512 1901 5.734498 CCTCTTTAGTTCGCGAATTCATTTG 59.266 40.000 26.23 13.04 0.00 2.32
1513 1902 5.086058 TCTTTAGTTCGCGAATTCATTTGC 58.914 37.500 26.23 9.31 42.45 3.68
1655 2075 3.907221 TCTGGGTAGATACGCTTAAGGT 58.093 45.455 4.29 3.38 39.57 3.50
1681 2101 2.880890 AGTCAAAGATGCAACACAGGAC 59.119 45.455 0.00 0.00 0.00 3.85
1694 2115 5.248640 CAACACAGGACAGTAGATGGAATT 58.751 41.667 0.00 0.00 0.00 2.17
1706 2127 2.922283 AGATGGAATTCTGGTCCCTGTT 59.078 45.455 5.23 0.00 33.89 3.16
1709 2130 2.307686 TGGAATTCTGGTCCCTGTTACC 59.692 50.000 5.23 0.00 37.53 2.85
1712 2133 3.721087 ATTCTGGTCCCTGTTACCTTG 57.279 47.619 0.00 0.00 37.91 3.61
1713 2134 1.358152 TCTGGTCCCTGTTACCTTGG 58.642 55.000 0.00 0.00 37.91 3.61
1715 2136 2.158127 TCTGGTCCCTGTTACCTTGGTA 60.158 50.000 0.00 0.00 37.91 3.25
1729 2150 8.499406 TGTTACCTTGGTATGCTATTAATTCCT 58.501 33.333 0.00 0.00 0.00 3.36
1730 2151 9.350951 GTTACCTTGGTATGCTATTAATTCCTT 57.649 33.333 0.00 0.00 0.00 3.36
2044 2467 0.835276 CACAGATGGAGCTGGATGGA 59.165 55.000 0.00 0.00 40.20 3.41
2050 2473 1.821332 GGAGCTGGATGGAAAGGCG 60.821 63.158 0.00 0.00 0.00 5.52
2120 2543 7.760340 TGTTGTTTACCCAAGTGTGTTTATTTC 59.240 33.333 0.00 0.00 0.00 2.17
2223 2646 5.999600 TGATGTGTCATCATCACAACTTCTT 59.000 36.000 8.14 0.00 45.89 2.52
2842 3325 8.560355 TGGTATTTATTTGCGCATCATATACT 57.440 30.769 12.75 2.02 0.00 2.12
2843 3326 9.008965 TGGTATTTATTTGCGCATCATATACTT 57.991 29.630 12.75 0.66 0.00 2.24
2844 3327 9.490663 GGTATTTATTTGCGCATCATATACTTC 57.509 33.333 12.75 1.63 0.00 3.01
2846 3329 8.955061 ATTTATTTGCGCATCATATACTTCAC 57.045 30.769 12.75 0.00 0.00 3.18
2848 3331 4.794248 TTGCGCATCATATACTTCACAC 57.206 40.909 12.75 0.00 0.00 3.82
2994 3667 8.514594 TCTGAACATGGTCTGAAATTATTGTTC 58.485 33.333 17.09 0.00 34.38 3.18
2995 3668 8.408043 TGAACATGGTCTGAAATTATTGTTCT 57.592 30.769 12.94 0.00 34.73 3.01
2996 3669 8.859090 TGAACATGGTCTGAAATTATTGTTCTT 58.141 29.630 12.94 0.00 34.73 2.52
2997 3670 9.132521 GAACATGGTCTGAAATTATTGTTCTTG 57.867 33.333 2.64 0.00 32.04 3.02
3000 3673 9.350357 CATGGTCTGAAATTATTGTTCTTGAAG 57.650 33.333 0.00 0.00 0.00 3.02
3001 3674 8.463930 TGGTCTGAAATTATTGTTCTTGAAGT 57.536 30.769 0.00 0.00 0.00 3.01
3002 3675 8.352201 TGGTCTGAAATTATTGTTCTTGAAGTG 58.648 33.333 0.00 0.00 0.00 3.16
3003 3676 7.809806 GGTCTGAAATTATTGTTCTTGAAGTGG 59.190 37.037 0.00 0.00 0.00 4.00
3004 3677 8.567948 GTCTGAAATTATTGTTCTTGAAGTGGA 58.432 33.333 0.00 0.00 0.00 4.02
3005 3678 9.300681 TCTGAAATTATTGTTCTTGAAGTGGAT 57.699 29.630 0.00 0.00 0.00 3.41
3006 3679 9.350357 CTGAAATTATTGTTCTTGAAGTGGATG 57.650 33.333 0.00 0.00 0.00 3.51
3332 4015 5.534207 ACAAATTTCCTGCTCATTGAACA 57.466 34.783 0.00 0.00 0.00 3.18
3352 4035 2.673368 CAGTCCATACTGTCTTTTCGCC 59.327 50.000 0.00 0.00 46.76 5.54
3439 4122 4.333649 TCAGAGGAGCGCAAGAAAATATTG 59.666 41.667 11.47 0.00 43.02 1.90
3959 4642 6.016276 AGTCCAGGTATTGTTTGTTGTTGATC 60.016 38.462 0.00 0.00 0.00 2.92
4530 5216 5.734720 TGCTGCTACTAGTGCTTTCTAAAT 58.265 37.500 5.39 0.00 0.00 1.40
4876 5562 1.139095 GTGAACGGAGGGAGTAGCG 59.861 63.158 0.00 0.00 0.00 4.26
4959 5645 4.819630 TCTTTTACCGTGAAGCAATGAACT 59.180 37.500 0.00 0.00 0.00 3.01
4960 5646 5.992829 TCTTTTACCGTGAAGCAATGAACTA 59.007 36.000 0.00 0.00 0.00 2.24
4961 5647 6.653320 TCTTTTACCGTGAAGCAATGAACTAT 59.347 34.615 0.00 0.00 0.00 2.12
4962 5648 7.820386 TCTTTTACCGTGAAGCAATGAACTATA 59.180 33.333 0.00 0.00 0.00 1.31
4963 5649 8.500753 TTTTACCGTGAAGCAATGAACTATAT 57.499 30.769 0.00 0.00 0.00 0.86
4964 5650 9.602568 TTTTACCGTGAAGCAATGAACTATATA 57.397 29.630 0.00 0.00 0.00 0.86
5159 5846 0.473755 TGAGCCTCAAAAGCTGGTGA 59.526 50.000 0.00 0.00 41.75 4.02
5160 5847 1.074405 TGAGCCTCAAAAGCTGGTGAT 59.926 47.619 0.00 0.00 41.75 3.06
5596 6287 7.346751 AGATCTTATGAAGACTCCAGAACTC 57.653 40.000 0.00 0.00 41.01 3.01
5703 6394 2.862541 TGGTGTCCATTCAAGAGTTGG 58.137 47.619 0.00 0.00 0.00 3.77
5832 6523 8.519526 TCGTGTAGAAGAAATTAATTGCCAAAT 58.480 29.630 0.39 0.00 0.00 2.32
5965 6656 2.158740 TCCTGAACCACGGATTCACAAA 60.159 45.455 0.00 0.00 32.67 2.83
5991 6682 3.788227 TCCTGGCAGTGTATTGAACTT 57.212 42.857 14.43 0.00 0.00 2.66
6055 6747 6.696148 CCGCTCGTTTCTAGTATGAAAGTAAT 59.304 38.462 0.00 0.00 36.72 1.89
6082 6774 4.788925 TCAGGATTATACCAGTTTGGGG 57.211 45.455 0.00 0.00 43.37 4.96
6123 6815 4.331168 CAGAATAACAGCTACCTTCACTGC 59.669 45.833 0.00 0.00 34.72 4.40
6146 6838 5.455392 CGCTTGCCAAATCTAATAATCCAG 58.545 41.667 0.00 0.00 0.00 3.86
6179 6871 2.689983 GACCTCCGTCCGGAATTAGTTA 59.310 50.000 5.23 0.00 44.66 2.24
6254 6946 0.038892 GACAAGTAACTCCGGACGCA 60.039 55.000 0.00 0.00 0.00 5.24
6262 6954 1.828660 CTCCGGACGCAGGGAGTAT 60.829 63.158 0.00 0.00 43.91 2.12
6268 6960 1.202545 GGACGCAGGGAGTATTTCCTC 60.203 57.143 0.00 0.00 45.98 3.71
6500 7549 2.917933 TGTGAGGTTTGGTTCAGTCAG 58.082 47.619 0.00 0.00 0.00 3.51
6501 7550 2.238646 TGTGAGGTTTGGTTCAGTCAGT 59.761 45.455 0.00 0.00 0.00 3.41
6502 7551 3.452990 TGTGAGGTTTGGTTCAGTCAGTA 59.547 43.478 0.00 0.00 0.00 2.74
6503 7552 3.808174 GTGAGGTTTGGTTCAGTCAGTAC 59.192 47.826 0.00 0.00 0.00 2.73
6504 7553 3.452990 TGAGGTTTGGTTCAGTCAGTACA 59.547 43.478 0.00 0.00 0.00 2.90
6505 7554 4.058817 GAGGTTTGGTTCAGTCAGTACAG 58.941 47.826 0.00 0.00 0.00 2.74
6506 7555 3.454812 AGGTTTGGTTCAGTCAGTACAGT 59.545 43.478 0.00 0.00 0.00 3.55
6507 7556 3.808174 GGTTTGGTTCAGTCAGTACAGTC 59.192 47.826 0.00 0.00 0.00 3.51
6508 7557 4.439057 GTTTGGTTCAGTCAGTACAGTCA 58.561 43.478 0.00 0.00 0.00 3.41
6522 7571 9.434559 GTCAGTACAGTCAAACAAAATACTTTC 57.565 33.333 0.00 0.00 0.00 2.62
6773 7825 4.747605 GTCTCCCTGATTCGATTTCTAAGC 59.252 45.833 0.00 0.00 0.00 3.09
6984 8036 9.912634 CAACAGATACCTTATTTCATTGTTTGT 57.087 29.630 0.00 0.00 0.00 2.83
6985 8037 9.912634 AACAGATACCTTATTTCATTGTTTGTG 57.087 29.630 0.00 0.00 0.00 3.33
6986 8038 8.522830 ACAGATACCTTATTTCATTGTTTGTGG 58.477 33.333 0.00 0.00 0.00 4.17
6987 8039 7.489113 CAGATACCTTATTTCATTGTTTGTGGC 59.511 37.037 0.00 0.00 0.00 5.01
6988 8040 5.806654 ACCTTATTTCATTGTTTGTGGCT 57.193 34.783 0.00 0.00 0.00 4.75
6989 8041 6.173427 ACCTTATTTCATTGTTTGTGGCTT 57.827 33.333 0.00 0.00 0.00 4.35
6990 8042 6.591001 ACCTTATTTCATTGTTTGTGGCTTT 58.409 32.000 0.00 0.00 0.00 3.51
6991 8043 6.482973 ACCTTATTTCATTGTTTGTGGCTTTG 59.517 34.615 0.00 0.00 0.00 2.77
7049 8101 7.812309 TTCTGTGATGATTAAGTGTCTAACG 57.188 36.000 0.00 0.00 0.00 3.18
7050 8102 7.153217 TCTGTGATGATTAAGTGTCTAACGA 57.847 36.000 0.00 0.00 0.00 3.85
7051 8103 7.599171 TCTGTGATGATTAAGTGTCTAACGAA 58.401 34.615 0.00 0.00 0.00 3.85
7052 8104 7.755373 TCTGTGATGATTAAGTGTCTAACGAAG 59.245 37.037 0.00 0.00 0.00 3.79
7053 8105 7.599171 TGTGATGATTAAGTGTCTAACGAAGA 58.401 34.615 0.00 0.00 0.00 2.87
7054 8106 8.251026 TGTGATGATTAAGTGTCTAACGAAGAT 58.749 33.333 0.00 0.00 36.36 2.40
7055 8107 9.731819 GTGATGATTAAGTGTCTAACGAAGATA 57.268 33.333 0.00 0.00 36.36 1.98
7065 8117 9.490379 AGTGTCTAACGAAGATAAAATTTCACT 57.510 29.630 0.00 0.00 36.36 3.41
7382 8434 6.183360 TGGCTATTCTATGTAGTCCCTTTGTC 60.183 42.308 0.00 0.00 0.00 3.18
7541 8618 6.098552 AGACCTACTCCAAATTAGCCTAAGTC 59.901 42.308 0.00 0.00 0.00 3.01
7612 8689 8.189119 TCTTCAAGTAATTTAAACTGCCCATT 57.811 30.769 0.00 0.00 0.00 3.16
7840 8917 7.758528 GCAAGCTAGTTCATCATTTGAATCTTT 59.241 33.333 0.00 0.00 45.77 2.52
7959 9079 8.606040 CCATGTTTTGGTCAATTTGTAAATCT 57.394 30.769 0.00 0.00 40.99 2.40
7960 9080 9.054922 CCATGTTTTGGTCAATTTGTAAATCTT 57.945 29.630 0.00 0.00 40.99 2.40
7968 9088 9.515226 TGGTCAATTTGTAAATCTTAAGTAGCT 57.485 29.630 1.63 0.00 0.00 3.32
8147 9330 1.846007 AAACTGCACTGGTGGTTCAA 58.154 45.000 2.84 0.00 0.00 2.69
8320 9504 4.202245 TGTTGAGTACACCCATAAGAGC 57.798 45.455 0.00 0.00 0.00 4.09
8413 9599 9.567776 TTCTAATTCTCATGTTTGGTTAACTGA 57.432 29.630 5.42 0.00 37.64 3.41
8414 9600 9.567776 TCTAATTCTCATGTTTGGTTAACTGAA 57.432 29.630 5.42 0.00 37.64 3.02
8415 9601 9.612620 CTAATTCTCATGTTTGGTTAACTGAAC 57.387 33.333 5.42 10.80 37.64 3.18
8416 9602 7.823745 ATTCTCATGTTTGGTTAACTGAACT 57.176 32.000 18.56 7.75 38.21 3.01
8417 9603 6.618287 TCTCATGTTTGGTTAACTGAACTG 57.382 37.500 18.56 15.10 38.21 3.16
8418 9604 6.119536 TCTCATGTTTGGTTAACTGAACTGT 58.880 36.000 18.56 9.72 38.21 3.55
8491 9679 7.589574 GTCTCATCAGACTAAGGAAAGAAAC 57.410 40.000 0.00 0.00 45.20 2.78
8508 9696 4.668636 AGAAACCCGGTGGATCAATTAAA 58.331 39.130 0.00 0.00 34.81 1.52
8689 9982 1.366111 CCAGCAGCATTGGCAATTGC 61.366 55.000 23.06 23.06 44.61 3.56
8828 10121 7.651027 AGGCTAAATCAAATTAAGCAGACAT 57.349 32.000 0.00 0.00 0.00 3.06
8832 10125 9.956720 GCTAAATCAAATTAAGCAGACATACAT 57.043 29.630 0.00 0.00 0.00 2.29
8849 10142 2.802719 ACATAAATCTTGGCCCAACGT 58.197 42.857 0.00 0.00 0.00 3.99
8899 10197 2.229792 TGTCTGCTTGTGACCCATTTC 58.770 47.619 0.00 0.00 33.83 2.17
8912 10210 2.040145 ACCCATTTCTGGCCCAAATTTG 59.960 45.455 11.40 11.40 41.64 2.32
8930 10228 2.335011 GGTTGGGTTTGCGTCAGC 59.665 61.111 0.00 0.00 45.41 4.26
8956 10254 1.632948 GCTTGTAACGTCCGCCCTTC 61.633 60.000 0.00 0.00 0.00 3.46
8974 10273 0.178891 TCTCCTCCCCTTGCTTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
8990 10289 3.513680 TGTCTGTTAGTGACACAACGT 57.486 42.857 8.59 0.00 39.23 3.99
9009 10308 3.878667 CATTCTCCCCTCCCGCCC 61.879 72.222 0.00 0.00 0.00 6.13
9036 10335 3.411517 CCGACCCCTCTGGCCATT 61.412 66.667 5.51 0.00 37.83 3.16
9037 10336 2.190578 CGACCCCTCTGGCCATTC 59.809 66.667 5.51 0.00 37.83 2.67
9039 10338 1.048724 CGACCCCTCTGGCCATTCTA 61.049 60.000 5.51 0.00 37.83 2.10
9042 10341 1.447643 CCCTCTGGCCATTCTACCG 59.552 63.158 5.51 0.00 0.00 4.02
9044 10343 0.541863 CCTCTGGCCATTCTACCGTT 59.458 55.000 5.51 0.00 0.00 4.44
9046 10345 1.207089 CTCTGGCCATTCTACCGTTGA 59.793 52.381 5.51 0.00 0.00 3.18
9048 10347 0.687920 TGGCCATTCTACCGTTGACA 59.312 50.000 0.00 0.00 0.00 3.58
9055 10354 1.005394 CTACCGTTGACACCGCCTT 60.005 57.895 0.00 0.00 0.00 4.35
9115 10418 1.920835 GCACTCTTCCCCCACCTCT 60.921 63.158 0.00 0.00 0.00 3.69
9117 10420 1.952621 CACTCTTCCCCCACCTCTAA 58.047 55.000 0.00 0.00 0.00 2.10
9120 10423 0.620700 TCTTCCCCCACCTCTAAGCC 60.621 60.000 0.00 0.00 0.00 4.35
9154 10457 1.472480 GCTGTTGCCGATGTTGGTTAT 59.528 47.619 0.00 0.00 0.00 1.89
9155 10458 2.477863 GCTGTTGCCGATGTTGGTTATC 60.478 50.000 0.00 0.00 0.00 1.75
9165 10468 3.907894 TGTTGGTTATCTGTTTTCGCC 57.092 42.857 0.00 0.00 0.00 5.54
9167 10470 1.444836 TGGTTATCTGTTTTCGCCGG 58.555 50.000 0.00 0.00 0.00 6.13
9169 10472 0.800012 GTTATCTGTTTTCGCCGGCA 59.200 50.000 28.98 11.20 0.00 5.69
9184 10487 1.369625 CGGCATCTTAACACCTCCAC 58.630 55.000 0.00 0.00 0.00 4.02
9207 10510 4.016706 CGTCGCCCCCTCACCTTT 62.017 66.667 0.00 0.00 0.00 3.11
9212 10515 1.606601 GCCCCCTCACCTTTTGTCC 60.607 63.158 0.00 0.00 0.00 4.02
9213 10516 2.081585 GCCCCCTCACCTTTTGTCCT 62.082 60.000 0.00 0.00 0.00 3.85
9214 10517 0.482887 CCCCCTCACCTTTTGTCCTT 59.517 55.000 0.00 0.00 0.00 3.36
9215 10518 1.620822 CCCCTCACCTTTTGTCCTTG 58.379 55.000 0.00 0.00 0.00 3.61
9216 10519 0.961753 CCCTCACCTTTTGTCCTTGC 59.038 55.000 0.00 0.00 0.00 4.01
9217 10520 1.479389 CCCTCACCTTTTGTCCTTGCT 60.479 52.381 0.00 0.00 0.00 3.91
9218 10521 2.310538 CCTCACCTTTTGTCCTTGCTT 58.689 47.619 0.00 0.00 0.00 3.91
9219 10522 2.035066 CCTCACCTTTTGTCCTTGCTTG 59.965 50.000 0.00 0.00 0.00 4.01
9220 10523 1.408702 TCACCTTTTGTCCTTGCTTGC 59.591 47.619 0.00 0.00 0.00 4.01
9221 10524 1.136695 CACCTTTTGTCCTTGCTTGCA 59.863 47.619 0.00 0.00 0.00 4.08
9222 10525 1.136891 ACCTTTTGTCCTTGCTTGCAC 59.863 47.619 0.00 0.00 0.00 4.57
9223 10526 1.410153 CCTTTTGTCCTTGCTTGCACT 59.590 47.619 0.00 0.00 0.00 4.40
9224 10527 2.466846 CTTTTGTCCTTGCTTGCACTG 58.533 47.619 0.00 0.00 0.00 3.66
9225 10528 1.473258 TTTGTCCTTGCTTGCACTGT 58.527 45.000 0.00 0.00 0.00 3.55
9226 10529 1.024271 TTGTCCTTGCTTGCACTGTC 58.976 50.000 0.00 0.00 0.00 3.51
9227 10530 0.107263 TGTCCTTGCTTGCACTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
9228 10531 1.242076 GTCCTTGCTTGCACTGTCAT 58.758 50.000 0.00 0.00 0.00 3.06
9229 10532 2.224499 TGTCCTTGCTTGCACTGTCATA 60.224 45.455 0.00 0.00 0.00 2.15
9230 10533 2.160417 GTCCTTGCTTGCACTGTCATAC 59.840 50.000 0.00 0.00 0.00 2.39
9231 10534 2.038952 TCCTTGCTTGCACTGTCATACT 59.961 45.455 0.00 0.00 0.00 2.12
9232 10535 2.816087 CCTTGCTTGCACTGTCATACTT 59.184 45.455 0.00 0.00 0.00 2.24
9233 10536 4.002982 CCTTGCTTGCACTGTCATACTTA 58.997 43.478 0.00 0.00 0.00 2.24
9234 10537 4.637534 CCTTGCTTGCACTGTCATACTTAT 59.362 41.667 0.00 0.00 0.00 1.73
9235 10538 5.124457 CCTTGCTTGCACTGTCATACTTATT 59.876 40.000 0.00 0.00 0.00 1.40
9236 10539 5.550232 TGCTTGCACTGTCATACTTATTG 57.450 39.130 0.00 0.00 0.00 1.90
9237 10540 5.003160 TGCTTGCACTGTCATACTTATTGT 58.997 37.500 0.00 0.00 0.00 2.71
9238 10541 5.106594 TGCTTGCACTGTCATACTTATTGTG 60.107 40.000 0.00 0.00 0.00 3.33
9239 10542 5.674569 GCTTGCACTGTCATACTTATTGTGG 60.675 44.000 0.00 0.00 0.00 4.17
9240 10543 3.689161 TGCACTGTCATACTTATTGTGGC 59.311 43.478 0.00 0.00 0.00 5.01
9241 10544 3.941483 GCACTGTCATACTTATTGTGGCT 59.059 43.478 0.00 0.00 0.00 4.75
9242 10545 4.396166 GCACTGTCATACTTATTGTGGCTT 59.604 41.667 0.00 0.00 0.00 4.35
9243 10546 5.447818 GCACTGTCATACTTATTGTGGCTTC 60.448 44.000 0.00 0.00 0.00 3.86
9244 10547 5.643348 CACTGTCATACTTATTGTGGCTTCA 59.357 40.000 0.00 0.00 0.00 3.02
9245 10548 5.643777 ACTGTCATACTTATTGTGGCTTCAC 59.356 40.000 0.00 0.00 41.56 3.18
9271 10574 8.688747 AAGATCTCTTGATTTGACACTCTTTT 57.311 30.769 0.00 0.00 34.38 2.27
9272 10575 8.688747 AGATCTCTTGATTTGACACTCTTTTT 57.311 30.769 0.00 0.00 32.19 1.94
9288 10591 3.430473 TTTTTCCGGCATGACTGGT 57.570 47.368 12.81 0.00 46.11 4.00
9289 10592 1.698506 TTTTTCCGGCATGACTGGTT 58.301 45.000 12.81 0.00 46.11 3.67
9290 10593 1.243902 TTTTCCGGCATGACTGGTTC 58.756 50.000 12.81 0.00 46.11 3.62
9291 10594 0.400213 TTTCCGGCATGACTGGTTCT 59.600 50.000 12.81 0.00 46.11 3.01
9292 10595 1.271856 TTCCGGCATGACTGGTTCTA 58.728 50.000 12.81 0.00 46.11 2.10
9293 10596 1.271856 TCCGGCATGACTGGTTCTAA 58.728 50.000 12.81 0.00 46.11 2.10
9294 10597 1.066430 TCCGGCATGACTGGTTCTAAC 60.066 52.381 12.81 0.00 46.11 2.34
9295 10598 1.338674 CCGGCATGACTGGTTCTAACA 60.339 52.381 0.00 0.00 40.35 2.41
9296 10599 2.632377 CGGCATGACTGGTTCTAACAT 58.368 47.619 0.00 0.00 0.00 2.71
9297 10600 2.352651 CGGCATGACTGGTTCTAACATG 59.647 50.000 0.00 0.00 40.50 3.21
9298 10601 3.609853 GGCATGACTGGTTCTAACATGA 58.390 45.455 0.00 0.00 40.13 3.07
9299 10602 4.202441 GGCATGACTGGTTCTAACATGAT 58.798 43.478 0.00 0.00 40.13 2.45
9300 10603 5.368145 GGCATGACTGGTTCTAACATGATA 58.632 41.667 0.00 0.00 40.13 2.15
9301 10604 5.468072 GGCATGACTGGTTCTAACATGATAG 59.532 44.000 0.00 0.62 40.13 2.08
9302 10605 5.049818 GCATGACTGGTTCTAACATGATAGC 60.050 44.000 0.00 0.00 40.13 2.97
9303 10606 5.675684 TGACTGGTTCTAACATGATAGCA 57.324 39.130 0.00 0.00 0.00 3.49
9304 10607 6.048732 TGACTGGTTCTAACATGATAGCAA 57.951 37.500 0.00 0.00 0.00 3.91
9305 10608 5.874810 TGACTGGTTCTAACATGATAGCAAC 59.125 40.000 0.00 8.01 0.00 4.17
9306 10609 4.870426 ACTGGTTCTAACATGATAGCAACG 59.130 41.667 0.00 0.00 0.00 4.10
9307 10610 4.827692 TGGTTCTAACATGATAGCAACGT 58.172 39.130 0.00 0.00 0.00 3.99
9308 10611 4.629634 TGGTTCTAACATGATAGCAACGTG 59.370 41.667 0.00 0.00 0.00 4.49
9309 10612 4.494199 GGTTCTAACATGATAGCAACGTGC 60.494 45.833 0.00 0.00 45.46 5.34
9320 10623 2.619013 GCAACGTGCTTTAATGCTCT 57.381 45.000 13.80 0.00 40.96 4.09
9321 10624 2.509870 GCAACGTGCTTTAATGCTCTC 58.490 47.619 13.80 4.82 40.96 3.20
9322 10625 2.160417 GCAACGTGCTTTAATGCTCTCT 59.840 45.455 13.80 0.00 40.96 3.10
9323 10626 3.370978 GCAACGTGCTTTAATGCTCTCTA 59.629 43.478 13.80 0.00 40.96 2.43
9324 10627 4.493220 GCAACGTGCTTTAATGCTCTCTAG 60.493 45.833 13.80 1.88 40.96 2.43
9325 10628 4.457834 ACGTGCTTTAATGCTCTCTAGT 57.542 40.909 13.80 2.42 0.00 2.57
9326 10629 4.177026 ACGTGCTTTAATGCTCTCTAGTG 58.823 43.478 13.80 0.00 0.00 2.74
9327 10630 4.177026 CGTGCTTTAATGCTCTCTAGTGT 58.823 43.478 13.80 0.00 0.00 3.55
9328 10631 4.627467 CGTGCTTTAATGCTCTCTAGTGTT 59.373 41.667 13.80 0.00 0.00 3.32
9329 10632 5.120830 CGTGCTTTAATGCTCTCTAGTGTTT 59.879 40.000 13.80 0.00 0.00 2.83
9330 10633 6.310197 GTGCTTTAATGCTCTCTAGTGTTTG 58.690 40.000 13.80 0.00 0.00 2.93
9331 10634 5.412594 TGCTTTAATGCTCTCTAGTGTTTGG 59.587 40.000 13.80 0.00 0.00 3.28
9332 10635 5.643777 GCTTTAATGCTCTCTAGTGTTTGGA 59.356 40.000 6.10 0.00 0.00 3.53
9333 10636 6.149474 GCTTTAATGCTCTCTAGTGTTTGGAA 59.851 38.462 6.10 0.00 0.00 3.53
9334 10637 7.625185 GCTTTAATGCTCTCTAGTGTTTGGAAG 60.625 40.741 6.10 0.00 0.00 3.46
9335 10638 3.685139 TGCTCTCTAGTGTTTGGAAGG 57.315 47.619 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.811317 GCCGAGCTCTCCGTGTTG 60.811 66.667 12.85 0.00 0.00 3.33
40 41 2.184322 GCCCTCGACTGATGCGAA 59.816 61.111 0.00 0.00 37.32 4.70
41 42 3.068064 TGCCCTCGACTGATGCGA 61.068 61.111 0.00 0.00 36.23 5.10
43 44 2.887568 CGTGCCCTCGACTGATGC 60.888 66.667 0.00 0.00 0.00 3.91
61 62 1.418908 ATCTCCTACAATGGGCCCCG 61.419 60.000 22.27 10.72 0.00 5.73
65 66 0.183492 TGGCATCTCCTACAATGGGC 59.817 55.000 0.00 0.00 35.26 5.36
87 88 3.807209 GCTGGTTGAACCTCAGTGTGTAT 60.807 47.826 16.33 0.00 39.58 2.29
94 95 1.151668 CGAAGCTGGTTGAACCTCAG 58.848 55.000 16.33 6.63 39.58 3.35
109 110 4.821589 GGAGCCGGTGGAGCGAAG 62.822 72.222 1.90 0.00 34.64 3.79
116 117 4.181010 CTGGATGGGAGCCGGTGG 62.181 72.222 1.90 0.00 0.00 4.61
125 126 2.123597 CCATGGGCACTGGATGGG 60.124 66.667 2.85 0.00 35.70 4.00
162 163 4.657408 TGGCATCGCAAGGGCACA 62.657 61.111 0.00 0.00 41.24 4.57
175 177 3.761218 TCGGCTTCATAAAGAAATTGGCA 59.239 39.130 0.00 0.00 35.40 4.92
177 179 4.094294 TCGTCGGCTTCATAAAGAAATTGG 59.906 41.667 0.00 0.00 35.40 3.16
178 180 5.163854 ACTCGTCGGCTTCATAAAGAAATTG 60.164 40.000 0.00 0.00 35.40 2.32
181 183 3.678072 CACTCGTCGGCTTCATAAAGAAA 59.322 43.478 0.00 0.00 35.40 2.52
185 187 1.067142 AGCACTCGTCGGCTTCATAAA 60.067 47.619 0.00 0.00 36.92 1.40
201 203 1.956477 ACATGTGGGAAAAGACAGCAC 59.044 47.619 0.00 0.00 0.00 4.40
202 204 1.955778 CACATGTGGGAAAAGACAGCA 59.044 47.619 18.51 0.00 0.00 4.41
205 207 1.327303 GGCACATGTGGGAAAAGACA 58.673 50.000 26.55 0.00 0.00 3.41
213 215 0.382873 CATTGATCGGCACATGTGGG 59.617 55.000 26.55 3.18 0.00 4.61
215 217 0.248743 GGCATTGATCGGCACATGTG 60.249 55.000 21.83 21.83 0.00 3.21
216 218 1.717791 CGGCATTGATCGGCACATGT 61.718 55.000 0.00 0.00 0.00 3.21
233 235 0.955919 GGTCTCAACTTCCTTGCCGG 60.956 60.000 0.00 0.00 0.00 6.13
238 240 2.231721 GCTCTACGGTCTCAACTTCCTT 59.768 50.000 0.00 0.00 0.00 3.36
282 284 1.442148 GCCTTACCAGTCCCGCTAG 59.558 63.158 0.00 0.00 0.00 3.42
283 285 2.420568 CGCCTTACCAGTCCCGCTA 61.421 63.158 0.00 0.00 0.00 4.26
284 286 3.771160 CGCCTTACCAGTCCCGCT 61.771 66.667 0.00 0.00 0.00 5.52
285 287 4.078516 ACGCCTTACCAGTCCCGC 62.079 66.667 0.00 0.00 0.00 6.13
286 288 2.125673 CACGCCTTACCAGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
287 289 0.953960 CAACACGCCTTACCAGTCCC 60.954 60.000 0.00 0.00 0.00 4.46
288 290 0.953960 CCAACACGCCTTACCAGTCC 60.954 60.000 0.00 0.00 0.00 3.85
289 291 1.574702 GCCAACACGCCTTACCAGTC 61.575 60.000 0.00 0.00 0.00 3.51
290 292 1.599797 GCCAACACGCCTTACCAGT 60.600 57.895 0.00 0.00 0.00 4.00
291 293 1.577328 CTGCCAACACGCCTTACCAG 61.577 60.000 0.00 0.00 0.00 4.00
292 294 1.599518 CTGCCAACACGCCTTACCA 60.600 57.895 0.00 0.00 0.00 3.25
293 295 2.978018 GCTGCCAACACGCCTTACC 61.978 63.158 0.00 0.00 0.00 2.85
294 296 2.187599 CTGCTGCCAACACGCCTTAC 62.188 60.000 0.00 0.00 0.00 2.34
295 297 1.965930 CTGCTGCCAACACGCCTTA 60.966 57.895 0.00 0.00 0.00 2.69
296 298 3.289834 CTGCTGCCAACACGCCTT 61.290 61.111 0.00 0.00 0.00 4.35
299 301 3.562779 ATTGCTGCTGCCAACACGC 62.563 57.895 13.47 0.00 38.71 5.34
300 302 1.731613 CATTGCTGCTGCCAACACG 60.732 57.895 13.47 0.00 38.71 4.49
301 303 2.025418 GCATTGCTGCTGCCAACAC 61.025 57.895 13.47 0.00 45.32 3.32
302 304 2.340809 GCATTGCTGCTGCCAACA 59.659 55.556 13.47 0.00 45.32 3.33
303 305 2.807895 CGCATTGCTGCTGCCAAC 60.808 61.111 13.47 0.00 46.65 3.77
304 306 4.058732 CCGCATTGCTGCTGCCAA 62.059 61.111 13.47 7.87 46.65 4.52
314 316 4.812476 TCGACGAGGGCCGCATTG 62.812 66.667 8.33 0.00 43.32 2.82
315 317 4.077184 TTCGACGAGGGCCGCATT 62.077 61.111 8.33 0.00 43.32 3.56
316 318 4.514577 CTTCGACGAGGGCCGCAT 62.515 66.667 8.33 0.00 43.32 4.73
318 320 4.736896 AACTTCGACGAGGGCCGC 62.737 66.667 11.93 0.00 43.32 6.53
319 321 2.809601 CAACTTCGACGAGGGCCG 60.810 66.667 11.93 0.00 45.44 6.13
320 322 2.434359 CCAACTTCGACGAGGGCC 60.434 66.667 11.93 0.00 0.00 5.80
321 323 2.434359 CCCAACTTCGACGAGGGC 60.434 66.667 11.93 0.00 31.81 5.19
322 324 2.264794 CCCCAACTTCGACGAGGG 59.735 66.667 11.93 11.94 39.29 4.30
323 325 2.434359 GCCCCAACTTCGACGAGG 60.434 66.667 5.30 5.30 0.00 4.63
324 326 2.809601 CGCCCCAACTTCGACGAG 60.810 66.667 0.00 0.00 0.00 4.18
325 327 4.367023 CCGCCCCAACTTCGACGA 62.367 66.667 0.00 0.00 0.00 4.20
327 329 3.952628 CTCCCGCCCCAACTTCGAC 62.953 68.421 0.00 0.00 0.00 4.20
328 330 3.702048 CTCCCGCCCCAACTTCGA 61.702 66.667 0.00 0.00 0.00 3.71
329 331 4.778143 CCTCCCGCCCCAACTTCG 62.778 72.222 0.00 0.00 0.00 3.79
330 332 4.426313 CCCTCCCGCCCCAACTTC 62.426 72.222 0.00 0.00 0.00 3.01
331 333 4.995058 TCCCTCCCGCCCCAACTT 62.995 66.667 0.00 0.00 0.00 2.66
337 339 4.576374 ATACCCTCCCTCCCGCCC 62.576 72.222 0.00 0.00 0.00 6.13
338 340 2.447959 AATACCCTCCCTCCCGCC 60.448 66.667 0.00 0.00 0.00 6.13
339 341 1.764854 TGAATACCCTCCCTCCCGC 60.765 63.158 0.00 0.00 0.00 6.13
340 342 0.689745 TGTGAATACCCTCCCTCCCG 60.690 60.000 0.00 0.00 0.00 5.14
341 343 1.490910 CTTGTGAATACCCTCCCTCCC 59.509 57.143 0.00 0.00 0.00 4.30
342 344 2.092914 CACTTGTGAATACCCTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
343 345 2.092914 CCACTTGTGAATACCCTCCCTC 60.093 54.545 1.89 0.00 0.00 4.30
344 346 1.916181 CCACTTGTGAATACCCTCCCT 59.084 52.381 1.89 0.00 0.00 4.20
345 347 1.913419 TCCACTTGTGAATACCCTCCC 59.087 52.381 1.89 0.00 0.00 4.30
346 348 3.199946 TGATCCACTTGTGAATACCCTCC 59.800 47.826 1.89 0.00 0.00 4.30
347 349 4.487714 TGATCCACTTGTGAATACCCTC 57.512 45.455 1.89 0.00 0.00 4.30
348 350 4.324563 CCTTGATCCACTTGTGAATACCCT 60.325 45.833 1.89 0.00 0.00 4.34
349 351 3.947834 CCTTGATCCACTTGTGAATACCC 59.052 47.826 1.89 0.00 0.00 3.69
350 352 4.843728 TCCTTGATCCACTTGTGAATACC 58.156 43.478 1.89 0.00 0.00 2.73
351 353 7.770897 ACTTATCCTTGATCCACTTGTGAATAC 59.229 37.037 1.89 0.00 0.00 1.89
352 354 7.861629 ACTTATCCTTGATCCACTTGTGAATA 58.138 34.615 1.89 0.00 0.00 1.75
353 355 6.725364 ACTTATCCTTGATCCACTTGTGAAT 58.275 36.000 1.89 0.00 0.00 2.57
354 356 6.126863 ACTTATCCTTGATCCACTTGTGAA 57.873 37.500 1.89 0.00 0.00 3.18
355 357 5.762179 ACTTATCCTTGATCCACTTGTGA 57.238 39.130 1.89 0.00 0.00 3.58
356 358 6.878317 TCTACTTATCCTTGATCCACTTGTG 58.122 40.000 0.00 0.00 0.00 3.33
357 359 6.098982 CCTCTACTTATCCTTGATCCACTTGT 59.901 42.308 0.00 0.00 0.00 3.16
358 360 6.463614 CCCTCTACTTATCCTTGATCCACTTG 60.464 46.154 0.00 0.00 0.00 3.16
359 361 5.604650 CCCTCTACTTATCCTTGATCCACTT 59.395 44.000 0.00 0.00 0.00 3.16
360 362 5.151454 CCCTCTACTTATCCTTGATCCACT 58.849 45.833 0.00 0.00 0.00 4.00
361 363 4.262678 GCCCTCTACTTATCCTTGATCCAC 60.263 50.000 0.00 0.00 0.00 4.02
362 364 3.904339 GCCCTCTACTTATCCTTGATCCA 59.096 47.826 0.00 0.00 0.00 3.41
363 365 3.056465 CGCCCTCTACTTATCCTTGATCC 60.056 52.174 0.00 0.00 0.00 3.36
364 366 3.056465 CCGCCCTCTACTTATCCTTGATC 60.056 52.174 0.00 0.00 0.00 2.92
365 367 2.900546 CCGCCCTCTACTTATCCTTGAT 59.099 50.000 0.00 0.00 0.00 2.57
366 368 2.091499 TCCGCCCTCTACTTATCCTTGA 60.091 50.000 0.00 0.00 0.00 3.02
367 369 2.297597 CTCCGCCCTCTACTTATCCTTG 59.702 54.545 0.00 0.00 0.00 3.61
368 370 2.091222 ACTCCGCCCTCTACTTATCCTT 60.091 50.000 0.00 0.00 0.00 3.36
369 371 1.499870 ACTCCGCCCTCTACTTATCCT 59.500 52.381 0.00 0.00 0.00 3.24
370 372 1.614413 CACTCCGCCCTCTACTTATCC 59.386 57.143 0.00 0.00 0.00 2.59
371 373 1.614413 CCACTCCGCCCTCTACTTATC 59.386 57.143 0.00 0.00 0.00 1.75
372 374 1.705873 CCACTCCGCCCTCTACTTAT 58.294 55.000 0.00 0.00 0.00 1.73
373 375 1.041447 GCCACTCCGCCCTCTACTTA 61.041 60.000 0.00 0.00 0.00 2.24
374 376 2.359967 GCCACTCCGCCCTCTACTT 61.360 63.158 0.00 0.00 0.00 2.24
375 377 2.760385 GCCACTCCGCCCTCTACT 60.760 66.667 0.00 0.00 0.00 2.57
376 378 4.208686 CGCCACTCCGCCCTCTAC 62.209 72.222 0.00 0.00 0.00 2.59
384 386 4.554363 CCGACTAGCGCCACTCCG 62.554 72.222 2.29 1.34 39.11 4.63
385 387 4.874977 GCCGACTAGCGCCACTCC 62.875 72.222 2.29 0.00 39.11 3.85
393 395 1.946650 GCTGTCATCGCCGACTAGC 60.947 63.158 0.00 0.00 36.82 3.42
394 396 1.299468 GGCTGTCATCGCCGACTAG 60.299 63.158 0.00 0.00 37.87 2.57
395 397 2.805546 GGCTGTCATCGCCGACTA 59.194 61.111 0.00 0.00 37.87 2.59
400 402 2.279517 CCGTAGGCTGTCATCGCC 60.280 66.667 0.00 0.00 46.14 5.54
410 412 2.732619 CCTTGAGGGACCCGTAGGC 61.733 68.421 13.59 0.77 42.58 3.93
411 413 2.732619 GCCTTGAGGGACCCGTAGG 61.733 68.421 19.05 19.05 43.39 3.18
412 414 1.961180 CTGCCTTGAGGGACCCGTAG 61.961 65.000 4.40 3.77 37.23 3.51
413 415 1.987855 CTGCCTTGAGGGACCCGTA 60.988 63.158 4.40 0.00 37.23 4.02
414 416 3.322466 CTGCCTTGAGGGACCCGT 61.322 66.667 4.40 0.00 37.23 5.28
415 417 4.785453 GCTGCCTTGAGGGACCCG 62.785 72.222 4.40 0.00 37.23 5.28
416 418 3.334054 AGCTGCCTTGAGGGACCC 61.334 66.667 0.59 0.59 37.23 4.46
417 419 2.045536 CAGCTGCCTTGAGGGACC 60.046 66.667 0.00 0.00 37.23 4.46
418 420 0.034670 ATTCAGCTGCCTTGAGGGAC 60.035 55.000 9.47 0.00 37.23 4.46
419 421 0.254178 GATTCAGCTGCCTTGAGGGA 59.746 55.000 9.47 0.00 37.23 4.20
420 422 0.750911 GGATTCAGCTGCCTTGAGGG 60.751 60.000 9.47 0.00 35.18 4.30
421 423 0.034767 TGGATTCAGCTGCCTTGAGG 60.035 55.000 9.47 0.00 38.53 3.86
422 424 1.339824 ACTGGATTCAGCTGCCTTGAG 60.340 52.381 9.47 4.64 44.59 3.02
423 425 0.694771 ACTGGATTCAGCTGCCTTGA 59.305 50.000 9.47 0.00 44.59 3.02
424 426 1.542492 AACTGGATTCAGCTGCCTTG 58.458 50.000 9.47 5.05 44.59 3.61
425 427 2.299326 AAACTGGATTCAGCTGCCTT 57.701 45.000 9.47 0.00 44.59 4.35
426 428 2.299326 AAAACTGGATTCAGCTGCCT 57.701 45.000 9.47 0.00 44.59 4.75
445 447 0.968405 CAGCTGCTGCCCCTTAAAAA 59.032 50.000 17.73 0.00 40.80 1.94
446 448 0.112218 TCAGCTGCTGCCCCTTAAAA 59.888 50.000 24.38 1.10 40.80 1.52
447 449 0.112218 TTCAGCTGCTGCCCCTTAAA 59.888 50.000 24.38 9.04 40.80 1.52
448 450 0.332632 ATTCAGCTGCTGCCCCTTAA 59.667 50.000 24.38 12.69 40.80 1.85
449 451 0.107017 GATTCAGCTGCTGCCCCTTA 60.107 55.000 24.38 3.44 40.80 2.69
450 452 1.379576 GATTCAGCTGCTGCCCCTT 60.380 57.895 24.38 7.01 40.80 3.95
451 453 2.274760 GATTCAGCTGCTGCCCCT 59.725 61.111 24.38 8.59 40.80 4.79
452 454 2.832201 GGATTCAGCTGCTGCCCC 60.832 66.667 24.38 19.05 40.80 5.80
453 455 2.044650 TGGATTCAGCTGCTGCCC 60.045 61.111 24.38 22.22 40.80 5.36
454 456 0.964358 AACTGGATTCAGCTGCTGCC 60.964 55.000 24.38 19.33 44.59 4.85
455 457 0.170561 CAACTGGATTCAGCTGCTGC 59.829 55.000 24.38 7.62 44.59 5.25
456 458 0.809385 CCAACTGGATTCAGCTGCTG 59.191 55.000 23.31 23.31 44.59 4.41
457 459 0.323178 CCCAACTGGATTCAGCTGCT 60.323 55.000 9.47 0.00 44.59 4.24
458 460 0.322816 TCCCAACTGGATTCAGCTGC 60.323 55.000 9.47 0.00 44.59 5.25
459 461 3.963733 TCCCAACTGGATTCAGCTG 57.036 52.632 7.63 7.63 44.59 4.24
468 470 2.084546 GAAAAGGACGATCCCAACTGG 58.915 52.381 0.00 0.00 37.19 4.00
469 471 2.084546 GGAAAAGGACGATCCCAACTG 58.915 52.381 0.00 0.00 37.19 3.16
470 472 2.491675 GGAAAAGGACGATCCCAACT 57.508 50.000 0.00 0.00 37.19 3.16
475 477 0.743345 CACCGGGAAAAGGACGATCC 60.743 60.000 6.32 0.00 36.58 3.36
476 478 1.366854 GCACCGGGAAAAGGACGATC 61.367 60.000 6.32 0.00 0.00 3.69
477 479 1.376812 GCACCGGGAAAAGGACGAT 60.377 57.895 6.32 0.00 0.00 3.73
478 480 2.031465 GCACCGGGAAAAGGACGA 59.969 61.111 6.32 0.00 0.00 4.20
479 481 3.053896 GGCACCGGGAAAAGGACG 61.054 66.667 6.32 0.00 0.00 4.79
480 482 2.675423 GGGCACCGGGAAAAGGAC 60.675 66.667 6.32 0.00 40.86 3.85
492 494 3.214328 CCTATAGACATGTTTGGGGCAC 58.786 50.000 0.00 0.00 0.00 5.01
493 495 2.849943 ACCTATAGACATGTTTGGGGCA 59.150 45.455 0.00 0.00 0.00 5.36
494 496 3.577805 ACCTATAGACATGTTTGGGGC 57.422 47.619 0.00 0.00 0.00 5.80
495 497 5.373812 AGAACCTATAGACATGTTTGGGG 57.626 43.478 0.00 2.15 0.00 4.96
496 498 7.361457 TCTAGAACCTATAGACATGTTTGGG 57.639 40.000 0.00 2.54 0.00 4.12
515 517 7.919091 ACACTTGTTTATCGCGATTAATCTAGA 59.081 33.333 28.81 11.91 0.00 2.43
516 518 8.062231 ACACTTGTTTATCGCGATTAATCTAG 57.938 34.615 28.81 22.24 0.00 2.43
517 519 7.703197 TGACACTTGTTTATCGCGATTAATCTA 59.297 33.333 28.81 11.92 0.00 1.98
518 520 6.533723 TGACACTTGTTTATCGCGATTAATCT 59.466 34.615 28.81 4.63 0.00 2.40
519 521 6.701937 TGACACTTGTTTATCGCGATTAATC 58.298 36.000 28.81 16.76 0.00 1.75
520 522 6.238103 CCTGACACTTGTTTATCGCGATTAAT 60.238 38.462 28.81 8.02 0.00 1.40
521 523 5.062934 CCTGACACTTGTTTATCGCGATTAA 59.937 40.000 28.81 21.89 0.00 1.40
522 524 4.565166 CCTGACACTTGTTTATCGCGATTA 59.435 41.667 28.81 16.39 0.00 1.75
523 525 3.370978 CCTGACACTTGTTTATCGCGATT 59.629 43.478 28.81 11.54 0.00 3.34
524 526 2.930040 CCTGACACTTGTTTATCGCGAT 59.070 45.455 26.78 26.78 0.00 4.58
525 527 2.288579 ACCTGACACTTGTTTATCGCGA 60.289 45.455 13.09 13.09 0.00 5.87
526 528 2.066262 ACCTGACACTTGTTTATCGCG 58.934 47.619 0.00 0.00 0.00 5.87
527 529 2.806244 ACACCTGACACTTGTTTATCGC 59.194 45.455 0.00 0.00 0.00 4.58
528 530 3.121279 CGACACCTGACACTTGTTTATCG 59.879 47.826 0.00 0.00 0.00 2.92
530 532 4.056050 GTCGACACCTGACACTTGTTTAT 58.944 43.478 11.55 0.00 36.37 1.40
531 533 3.450578 GTCGACACCTGACACTTGTTTA 58.549 45.455 11.55 0.00 36.37 2.01
532 534 2.277084 GTCGACACCTGACACTTGTTT 58.723 47.619 11.55 0.00 36.37 2.83
533 535 1.472728 GGTCGACACCTGACACTTGTT 60.473 52.381 18.91 0.00 40.00 2.83
534 536 0.104304 GGTCGACACCTGACACTTGT 59.896 55.000 18.91 0.00 40.00 3.16
535 537 0.600255 GGGTCGACACCTGACACTTG 60.600 60.000 18.91 0.00 43.22 3.16
536 538 1.746517 GGGTCGACACCTGACACTT 59.253 57.895 18.91 0.00 43.22 3.16
537 539 3.456317 GGGTCGACACCTGACACT 58.544 61.111 18.91 0.00 43.22 3.55
549 665 2.047560 GGGTTCAGGTTCGGGTCG 60.048 66.667 0.00 0.00 0.00 4.79
617 742 1.019805 GTTTGGTAGGTCGCTGGAGC 61.020 60.000 0.00 0.00 40.99 4.70
643 768 0.800683 GCACGATGCAGCACGTACTA 60.801 55.000 18.50 0.00 44.26 1.82
644 769 2.094659 GCACGATGCAGCACGTACT 61.095 57.895 18.50 0.00 44.26 2.73
645 770 2.395690 GCACGATGCAGCACGTAC 59.604 61.111 18.50 12.00 44.26 3.67
947 1324 3.522731 CCGCCTCTCCCTGTCTCG 61.523 72.222 0.00 0.00 0.00 4.04
1131 1513 2.133553 CTCATAGAGACGCAGCAATGG 58.866 52.381 0.00 0.00 0.00 3.16
1206 1589 2.092429 TGACCATTCATCCTAACAGCCC 60.092 50.000 0.00 0.00 0.00 5.19
1276 1665 1.638388 CTGCCATCAACGCGTCACAT 61.638 55.000 14.44 1.28 0.00 3.21
1277 1666 2.280457 TGCCATCAACGCGTCACA 60.280 55.556 14.44 0.00 0.00 3.58
1302 1691 6.446318 GCACCTCAAAAGTTTATTGATGACA 58.554 36.000 0.00 0.00 36.30 3.58
1460 1849 8.034804 CCTCCCATTTAACGAAATTTGAGAAAT 58.965 33.333 0.00 0.00 34.70 2.17
1501 1890 5.193216 CACGTATCTGAGCAAATGAATTCG 58.807 41.667 0.04 0.00 0.00 3.34
1511 1900 3.684305 CCATGAAAACACGTATCTGAGCA 59.316 43.478 0.00 0.00 0.00 4.26
1512 1901 3.932710 TCCATGAAAACACGTATCTGAGC 59.067 43.478 0.00 0.00 0.00 4.26
1513 1902 6.480524 TTTCCATGAAAACACGTATCTGAG 57.519 37.500 0.00 0.00 0.00 3.35
1655 2075 6.070824 TCCTGTGTTGCATCTTTGACTAGATA 60.071 38.462 0.00 0.00 33.17 1.98
1681 2101 3.713764 AGGGACCAGAATTCCATCTACTG 59.286 47.826 0.65 0.00 34.45 2.74
1694 2115 1.358152 CCAAGGTAACAGGGACCAGA 58.642 55.000 0.00 0.00 39.65 3.86
1706 2127 9.930158 AAAAGGAATTAATAGCATACCAAGGTA 57.070 29.630 0.73 0.73 34.87 3.08
2050 2473 3.245948 CTGACCAACAGCAGCGCAC 62.246 63.158 11.47 0.00 39.86 5.34
2120 2543 1.453155 AGTAAAGTTGATGCCAGGCG 58.547 50.000 7.03 0.00 0.00 5.52
2223 2646 3.818773 TGTCGAAGTCACTATCTGTCACA 59.181 43.478 0.00 0.00 0.00 3.58
2427 2909 7.143340 ACAGAATTGTTGTTGATGAACATCAG 58.857 34.615 15.43 0.00 41.77 2.90
2862 3535 8.100164 TCATGGTGTTATAATCAGAACTGTTCA 58.900 33.333 21.50 3.25 0.00 3.18
2994 3667 4.022589 ACAGAAATGCACATCCACTTCAAG 60.023 41.667 0.00 0.00 0.00 3.02
2995 3668 3.890756 ACAGAAATGCACATCCACTTCAA 59.109 39.130 0.00 0.00 0.00 2.69
2996 3669 3.489355 ACAGAAATGCACATCCACTTCA 58.511 40.909 0.00 0.00 0.00 3.02
2997 3670 4.510038 AACAGAAATGCACATCCACTTC 57.490 40.909 0.00 0.00 0.00 3.01
3239 3921 1.156736 CCATTTCACGGACACTGGTC 58.843 55.000 0.00 0.00 43.55 4.02
3332 4015 2.354805 GGGCGAAAAGACAGTATGGACT 60.355 50.000 0.00 0.00 43.62 3.85
3439 4122 3.764885 AAAGCATCCGCAACATCTAAC 57.235 42.857 0.00 0.00 42.27 2.34
4141 4825 7.114866 AGGAAGCTACTACATAGGAAAAGAC 57.885 40.000 0.00 0.00 0.00 3.01
5059 5745 1.676014 CCCAGATTGGTCGAGTTGGTC 60.676 57.143 0.00 0.00 35.17 4.02
5060 5746 0.324943 CCCAGATTGGTCGAGTTGGT 59.675 55.000 0.00 0.00 35.17 3.67
5061 5747 0.392998 CCCCAGATTGGTCGAGTTGG 60.393 60.000 0.00 0.00 35.17 3.77
5159 5846 2.038329 ATGTGCTTGCAGGCCCAT 59.962 55.556 19.11 15.90 0.00 4.00
5160 5847 2.677524 GATGTGCTTGCAGGCCCA 60.678 61.111 19.11 14.01 0.00 5.36
5596 6287 7.433719 GTCTTGAGTGCTACTAGTATGTCATTG 59.566 40.741 2.33 0.00 0.00 2.82
5669 6360 8.219868 TGAATGGACACCATATATGAATCAACT 58.780 33.333 14.54 0.00 44.40 3.16
5703 6394 7.659652 ACTAAAAGTGAGTGAAAGATAGTGC 57.340 36.000 0.00 0.00 0.00 4.40
5965 6656 1.372501 ATACACTGCCAGGAAACCCT 58.627 50.000 0.00 0.00 0.00 4.34
5991 6682 6.633325 AAAGAGAGAGAAATGGGAGAATCA 57.367 37.500 0.00 0.00 36.25 2.57
6055 6747 6.833416 CCAAACTGGTATAATCCTGATTTCCA 59.167 38.462 0.00 4.82 31.35 3.53
6061 6753 4.376223 TCCCCAAACTGGTATAATCCTGA 58.624 43.478 0.00 0.00 35.17 3.86
6123 6815 5.009010 ACTGGATTATTAGATTTGGCAAGCG 59.991 40.000 0.00 0.00 0.00 4.68
6146 6838 1.905449 CGGAGGTCGTACTTGCTAAC 58.095 55.000 0.00 0.00 0.00 2.34
6179 6871 6.596309 TCTAGATACATCCATTTCAGCGAT 57.404 37.500 0.00 0.00 0.00 4.58
6254 6946 3.803340 TGGAACTGAGGAAATACTCCCT 58.197 45.455 0.00 0.00 46.81 4.20
6262 6954 6.369629 TGTTTTTAGGATGGAACTGAGGAAA 58.630 36.000 0.00 0.00 0.00 3.13
6268 6960 6.672147 CAGTTCTGTTTTTAGGATGGAACTG 58.328 40.000 15.19 15.19 46.34 3.16
6500 7549 9.493206 TTTCGAAAGTATTTTGTTTGACTGTAC 57.507 29.630 6.47 0.00 39.27 2.90
6501 7550 9.493206 GTTTCGAAAGTATTTTGTTTGACTGTA 57.507 29.630 11.66 0.00 39.27 2.74
6502 7551 8.024285 TGTTTCGAAAGTATTTTGTTTGACTGT 58.976 29.630 11.66 0.00 39.27 3.55
6503 7552 8.388319 TGTTTCGAAAGTATTTTGTTTGACTG 57.612 30.769 11.66 0.00 39.27 3.51
6504 7553 9.019764 CATGTTTCGAAAGTATTTTGTTTGACT 57.980 29.630 11.66 0.00 39.27 3.41
6505 7554 8.803799 ACATGTTTCGAAAGTATTTTGTTTGAC 58.196 29.630 11.66 0.00 39.27 3.18
6506 7555 8.802856 CACATGTTTCGAAAGTATTTTGTTTGA 58.197 29.630 11.66 0.00 39.27 2.69
6507 7556 8.055402 CCACATGTTTCGAAAGTATTTTGTTTG 58.945 33.333 11.66 0.24 39.27 2.93
6508 7557 7.976734 TCCACATGTTTCGAAAGTATTTTGTTT 59.023 29.630 11.66 0.00 39.27 2.83
6522 7571 6.127810 AGAATCATCAATCCACATGTTTCG 57.872 37.500 0.00 0.00 35.33 3.46
6589 7641 1.594194 CTTTATGCGCAACAGGCCCA 61.594 55.000 17.11 0.00 40.31 5.36
6984 8036 5.128932 TCTACAGCTGTAGCACAAAGCCA 62.129 47.826 38.14 21.30 45.69 4.75
6985 8037 2.612972 TCTACAGCTGTAGCACAAAGCC 60.613 50.000 38.14 0.00 45.69 4.35
6986 8038 2.688507 TCTACAGCTGTAGCACAAAGC 58.311 47.619 38.14 0.00 45.69 3.51
6987 8039 6.968131 TTTATCTACAGCTGTAGCACAAAG 57.032 37.500 38.14 22.80 45.69 2.77
6988 8040 7.921786 ATTTTATCTACAGCTGTAGCACAAA 57.078 32.000 38.14 32.22 45.69 2.83
6989 8041 7.921786 AATTTTATCTACAGCTGTAGCACAA 57.078 32.000 38.14 28.74 45.69 3.33
6990 8042 7.606073 TGAAATTTTATCTACAGCTGTAGCACA 59.394 33.333 38.14 26.52 45.69 4.57
6991 8043 7.905493 GTGAAATTTTATCTACAGCTGTAGCAC 59.095 37.037 38.14 31.09 45.69 4.40
7039 8091 9.490379 AGTGAAATTTTATCTTCGTTAGACACT 57.510 29.630 0.00 0.00 35.19 3.55
7070 8122 9.516314 CGTTAGACACTTAATCATCACAGAATA 57.484 33.333 0.00 0.00 0.00 1.75
7071 8123 8.251026 TCGTTAGACACTTAATCATCACAGAAT 58.749 33.333 0.00 0.00 0.00 2.40
7072 8124 7.599171 TCGTTAGACACTTAATCATCACAGAA 58.401 34.615 0.00 0.00 0.00 3.02
7073 8125 7.153217 TCGTTAGACACTTAATCATCACAGA 57.847 36.000 0.00 0.00 0.00 3.41
7074 8126 7.993821 ATCGTTAGACACTTAATCATCACAG 57.006 36.000 0.00 0.00 0.00 3.66
7075 8127 8.683615 AGTATCGTTAGACACTTAATCATCACA 58.316 33.333 0.00 0.00 27.89 3.58
7076 8128 9.517609 AAGTATCGTTAGACACTTAATCATCAC 57.482 33.333 0.00 0.00 41.84 3.06
7382 8434 5.823209 TTGAAGATACAGCAATGGACATG 57.177 39.130 0.00 0.00 0.00 3.21
7454 8506 8.194104 CAGTAGCTTAGTGACATGATTAGTCTT 58.806 37.037 0.00 0.00 36.94 3.01
7612 8689 6.584471 TTGCAGTCCCCTAAATTCCTATAA 57.416 37.500 0.00 0.00 0.00 0.98
7840 8917 9.466497 AAGATTCAAAATCTAATAGAACCAGCA 57.534 29.630 2.79 0.00 0.00 4.41
7985 9105 8.844244 GGATGACAGTTTCTTCATTATAATGCT 58.156 33.333 18.89 7.68 36.36 3.79
7986 9106 8.844244 AGGATGACAGTTTCTTCATTATAATGC 58.156 33.333 18.89 5.65 36.36 3.56
8135 9318 8.576442 CAAGTAATAAAAGATTGAACCACCAGT 58.424 33.333 0.00 0.00 0.00 4.00
8320 9504 2.029649 CACACCTCATTGCAAAGGAAGG 60.030 50.000 21.51 17.73 35.56 3.46
8412 9598 3.300009 CACGCCATTTTCTGAACAGTTC 58.700 45.455 6.32 6.32 0.00 3.01
8413 9599 2.034558 CCACGCCATTTTCTGAACAGTT 59.965 45.455 1.73 0.00 0.00 3.16
8414 9600 1.608590 CCACGCCATTTTCTGAACAGT 59.391 47.619 1.73 0.00 0.00 3.55
8415 9601 1.608590 ACCACGCCATTTTCTGAACAG 59.391 47.619 0.00 0.00 0.00 3.16
8416 9602 1.686355 ACCACGCCATTTTCTGAACA 58.314 45.000 0.00 0.00 0.00 3.18
8417 9603 3.365969 CCTTACCACGCCATTTTCTGAAC 60.366 47.826 0.00 0.00 0.00 3.18
8418 9604 2.817258 CCTTACCACGCCATTTTCTGAA 59.183 45.455 0.00 0.00 0.00 3.02
8491 9679 4.159506 ACACAATTTAATTGATCCACCGGG 59.840 41.667 22.53 0.00 42.83 5.73
8508 9696 7.601856 CCACAATAAGATGGTTTGTACACAAT 58.398 34.615 0.00 0.00 35.55 2.71
8689 9982 5.377358 CACAACTTCAATAGCAAGAACGAG 58.623 41.667 0.00 0.00 0.00 4.18
8828 10121 3.692101 CACGTTGGGCCAAGATTTATGTA 59.308 43.478 21.62 0.00 0.00 2.29
8832 10125 0.885196 GCACGTTGGGCCAAGATTTA 59.115 50.000 21.62 0.00 0.00 1.40
8881 10179 2.507484 CAGAAATGGGTCACAAGCAGA 58.493 47.619 0.00 0.00 0.00 4.26
8882 10180 1.542915 CCAGAAATGGGTCACAAGCAG 59.457 52.381 0.00 0.00 0.00 4.24
8883 10181 1.619654 CCAGAAATGGGTCACAAGCA 58.380 50.000 0.00 0.00 0.00 3.91
8884 10182 0.244721 GCCAGAAATGGGTCACAAGC 59.755 55.000 0.00 0.00 0.00 4.01
8889 10187 0.189574 TTTGGGCCAGAAATGGGTCA 59.810 50.000 6.23 0.00 0.00 4.02
8912 10210 3.039134 CTGACGCAAACCCAACCC 58.961 61.111 0.00 0.00 0.00 4.11
8931 10229 1.722011 CGGACGTTACAAGCATCCTT 58.278 50.000 0.00 0.00 0.00 3.36
8932 10230 0.739813 GCGGACGTTACAAGCATCCT 60.740 55.000 0.00 0.00 0.00 3.24
8939 10237 0.037975 GAGAAGGGCGGACGTTACAA 60.038 55.000 0.00 0.00 0.00 2.41
8940 10238 1.588082 GAGAAGGGCGGACGTTACA 59.412 57.895 0.00 0.00 0.00 2.41
8942 10240 1.304713 AGGAGAAGGGCGGACGTTA 60.305 57.895 0.00 0.00 0.00 3.18
8947 10245 4.798682 GGGGAGGAGAAGGGCGGA 62.799 72.222 0.00 0.00 0.00 5.54
8956 10254 0.035630 CAGACAAGCAAGGGGAGGAG 60.036 60.000 0.00 0.00 0.00 3.69
8990 10289 2.768344 GCGGGAGGGGAGAATGGA 60.768 66.667 0.00 0.00 0.00 3.41
9009 10308 4.029809 GGGGTCGGTTGTGGAGGG 62.030 72.222 0.00 0.00 0.00 4.30
9036 10335 1.466025 AAGGCGGTGTCAACGGTAGA 61.466 55.000 13.07 0.00 0.00 2.59
9037 10336 1.005394 AAGGCGGTGTCAACGGTAG 60.005 57.895 13.07 0.00 0.00 3.18
9039 10338 2.280592 GAAGGCGGTGTCAACGGT 60.281 61.111 13.07 0.00 0.00 4.83
9042 10341 0.818040 AAGTGGAAGGCGGTGTCAAC 60.818 55.000 0.00 0.00 0.00 3.18
9044 10343 0.106918 AAAAGTGGAAGGCGGTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
9046 10345 2.414750 CAAAAGTGGAAGGCGGTGT 58.585 52.632 0.00 0.00 0.00 4.16
9097 10400 0.617820 TAGAGGTGGGGGAAGAGTGC 60.618 60.000 0.00 0.00 0.00 4.40
9133 10436 2.128853 AACCAACATCGGCAACAGCG 62.129 55.000 0.00 0.00 0.00 5.18
9135 10438 3.009723 AGATAACCAACATCGGCAACAG 58.990 45.455 0.00 0.00 0.00 3.16
9143 10446 4.412207 GGCGAAAACAGATAACCAACATC 58.588 43.478 0.00 0.00 0.00 3.06
9154 10457 0.605319 AAGATGCCGGCGAAAACAGA 60.605 50.000 23.90 0.49 0.00 3.41
9155 10458 1.083489 TAAGATGCCGGCGAAAACAG 58.917 50.000 23.90 0.00 0.00 3.16
9165 10468 1.369625 GTGGAGGTGTTAAGATGCCG 58.630 55.000 0.00 0.00 0.00 5.69
9167 10470 2.000447 GACGTGGAGGTGTTAAGATGC 59.000 52.381 0.00 0.00 0.00 3.91
9169 10472 2.353803 GCAGACGTGGAGGTGTTAAGAT 60.354 50.000 0.00 0.00 0.00 2.40
9207 10510 1.024271 GACAGTGCAAGCAAGGACAA 58.976 50.000 0.00 0.00 31.60 3.18
9212 10515 5.808042 ATAAGTATGACAGTGCAAGCAAG 57.192 39.130 0.00 0.00 0.00 4.01
9213 10516 5.473162 ACAATAAGTATGACAGTGCAAGCAA 59.527 36.000 0.00 0.00 0.00 3.91
9214 10517 5.003160 ACAATAAGTATGACAGTGCAAGCA 58.997 37.500 0.00 0.00 0.00 3.91
9215 10518 5.327091 CACAATAAGTATGACAGTGCAAGC 58.673 41.667 0.00 0.00 0.00 4.01
9216 10519 5.674569 GCCACAATAAGTATGACAGTGCAAG 60.675 44.000 0.00 0.00 0.00 4.01
9217 10520 4.155826 GCCACAATAAGTATGACAGTGCAA 59.844 41.667 0.00 0.00 0.00 4.08
9218 10521 3.689161 GCCACAATAAGTATGACAGTGCA 59.311 43.478 0.00 0.00 0.00 4.57
9219 10522 3.941483 AGCCACAATAAGTATGACAGTGC 59.059 43.478 0.00 0.00 0.00 4.40
9220 10523 5.643348 TGAAGCCACAATAAGTATGACAGTG 59.357 40.000 0.00 0.00 0.00 3.66
9221 10524 5.643777 GTGAAGCCACAATAAGTATGACAGT 59.356 40.000 0.00 0.00 42.72 3.55
9222 10525 6.111768 GTGAAGCCACAATAAGTATGACAG 57.888 41.667 0.00 0.00 42.72 3.51
9246 10549 8.688747 AAAAGAGTGTCAAATCAAGAGATCTT 57.311 30.769 0.00 0.00 36.45 2.40
9247 10550 8.688747 AAAAAGAGTGTCAAATCAAGAGATCT 57.311 30.769 0.00 0.00 31.90 2.75
9270 10573 1.611491 GAACCAGTCATGCCGGAAAAA 59.389 47.619 5.05 0.00 0.00 1.94
9271 10574 1.202879 AGAACCAGTCATGCCGGAAAA 60.203 47.619 5.05 0.00 0.00 2.29
9272 10575 0.400213 AGAACCAGTCATGCCGGAAA 59.600 50.000 5.05 0.00 0.00 3.13
9273 10576 1.271856 TAGAACCAGTCATGCCGGAA 58.728 50.000 5.05 0.00 0.00 4.30
9274 10577 1.066430 GTTAGAACCAGTCATGCCGGA 60.066 52.381 5.05 0.00 0.00 5.14
9275 10578 1.338674 TGTTAGAACCAGTCATGCCGG 60.339 52.381 0.00 0.00 0.00 6.13
9276 10579 2.093306 TGTTAGAACCAGTCATGCCG 57.907 50.000 0.00 0.00 0.00 5.69
9277 10580 3.609853 TCATGTTAGAACCAGTCATGCC 58.390 45.455 0.00 0.00 36.73 4.40
9278 10581 5.049818 GCTATCATGTTAGAACCAGTCATGC 60.050 44.000 13.87 0.00 36.73 4.06
9279 10582 6.051074 TGCTATCATGTTAGAACCAGTCATG 58.949 40.000 13.87 0.00 37.71 3.07
9280 10583 6.239217 TGCTATCATGTTAGAACCAGTCAT 57.761 37.500 13.87 0.00 0.00 3.06
9281 10584 5.675684 TGCTATCATGTTAGAACCAGTCA 57.324 39.130 13.87 0.00 0.00 3.41
9282 10585 5.005779 CGTTGCTATCATGTTAGAACCAGTC 59.994 44.000 13.87 0.00 0.00 3.51
9283 10586 4.870426 CGTTGCTATCATGTTAGAACCAGT 59.130 41.667 13.87 0.00 0.00 4.00
9284 10587 4.870426 ACGTTGCTATCATGTTAGAACCAG 59.130 41.667 13.87 7.02 0.00 4.00
9285 10588 4.629634 CACGTTGCTATCATGTTAGAACCA 59.370 41.667 13.87 1.28 0.00 3.67
9286 10589 4.494199 GCACGTTGCTATCATGTTAGAACC 60.494 45.833 13.87 0.00 40.96 3.62
9287 10590 4.578601 GCACGTTGCTATCATGTTAGAAC 58.421 43.478 13.87 12.65 40.96 3.01
9288 10591 4.857871 GCACGTTGCTATCATGTTAGAA 57.142 40.909 13.87 1.32 40.96 2.10
9301 10604 2.160417 AGAGAGCATTAAAGCACGTTGC 59.840 45.455 5.36 0.00 45.46 4.17
9302 10605 4.627467 ACTAGAGAGCATTAAAGCACGTTG 59.373 41.667 5.36 0.00 36.85 4.10
9303 10606 4.627467 CACTAGAGAGCATTAAAGCACGTT 59.373 41.667 5.36 0.00 36.85 3.99
9304 10607 4.177026 CACTAGAGAGCATTAAAGCACGT 58.823 43.478 5.36 0.00 36.85 4.49
9305 10608 4.177026 ACACTAGAGAGCATTAAAGCACG 58.823 43.478 5.36 0.00 36.85 5.34
9306 10609 6.310197 CAAACACTAGAGAGCATTAAAGCAC 58.690 40.000 5.36 0.00 36.85 4.40
9307 10610 5.412594 CCAAACACTAGAGAGCATTAAAGCA 59.587 40.000 5.36 0.00 36.85 3.91
9308 10611 5.643777 TCCAAACACTAGAGAGCATTAAAGC 59.356 40.000 0.00 0.00 0.00 3.51
9309 10612 7.148340 CCTTCCAAACACTAGAGAGCATTAAAG 60.148 40.741 0.00 0.00 0.00 1.85
9310 10613 6.655003 CCTTCCAAACACTAGAGAGCATTAAA 59.345 38.462 0.00 0.00 0.00 1.52
9311 10614 6.173339 CCTTCCAAACACTAGAGAGCATTAA 58.827 40.000 0.00 0.00 0.00 1.40
9312 10615 5.734720 CCTTCCAAACACTAGAGAGCATTA 58.265 41.667 0.00 0.00 0.00 1.90
9313 10616 4.583871 CCTTCCAAACACTAGAGAGCATT 58.416 43.478 0.00 0.00 0.00 3.56
9314 10617 4.213564 CCTTCCAAACACTAGAGAGCAT 57.786 45.455 0.00 0.00 0.00 3.79
9315 10618 3.685139 CCTTCCAAACACTAGAGAGCA 57.315 47.619 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.