Multiple sequence alignment - TraesCS1B01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G290200 chr1B 100.000 6127 0 0 1 6127 507305270 507311396 0.000000e+00 11315.0
1 TraesCS1B01G290200 chr1B 96.875 32 1 0 209 240 507304498 507304467 3.000000e-03 54.7
2 TraesCS1B01G290200 chr1A 93.421 3359 114 46 340 3643 479540410 479543716 0.000000e+00 4879.0
3 TraesCS1B01G290200 chr1A 89.872 2103 109 39 4062 6124 479544009 479546047 0.000000e+00 2608.0
4 TraesCS1B01G290200 chr1A 86.010 193 20 6 3699 3886 71070570 71070760 3.750000e-47 200.0
5 TraesCS1B01G290200 chr1A 89.706 68 7 0 1 68 479540029 479540096 3.040000e-13 87.9
6 TraesCS1B01G290200 chr1A 95.349 43 0 2 2986 3026 330766900 330766942 3.960000e-07 67.6
7 TraesCS1B01G290200 chr1D 92.816 2798 121 22 898 3643 378699220 378701989 0.000000e+00 3980.0
8 TraesCS1B01G290200 chr1D 88.777 2290 122 63 3880 6124 378702123 378704322 0.000000e+00 2680.0
9 TraesCS1B01G290200 chr1D 91.855 884 39 20 1 855 378697784 378698663 0.000000e+00 1203.0
10 TraesCS1B01G290200 chr1D 97.619 42 0 1 2986 3026 256999897 256999938 3.060000e-08 71.3
11 TraesCS1B01G290200 chr6B 90.698 172 11 5 3722 3889 127605973 127605803 2.220000e-54 224.0
12 TraesCS1B01G290200 chr3D 89.888 178 13 5 3719 3892 603686705 603686881 2.220000e-54 224.0
13 TraesCS1B01G290200 chr3D 89.941 169 13 3 3717 3882 380271862 380272029 1.340000e-51 215.0
14 TraesCS1B01G290200 chr3D 74.573 468 61 44 1185 1604 470490593 470490136 1.060000e-32 152.0
15 TraesCS1B01G290200 chr3D 92.000 75 2 3 1102 1173 470490721 470490648 1.090000e-17 102.0
16 TraesCS1B01G290200 chr5D 90.533 169 13 2 3719 3885 241274850 241274683 2.870000e-53 220.0
17 TraesCS1B01G290200 chr5D 87.302 189 19 4 3710 3895 204324621 204324435 1.730000e-50 211.0
18 TraesCS1B01G290200 chr5D 95.349 43 1 1 2989 3030 471051615 471051573 3.960000e-07 67.6
19 TraesCS1B01G290200 chr5A 90.058 171 14 2 3716 3884 653299434 653299603 1.030000e-52 219.0
20 TraesCS1B01G290200 chr5A 95.652 46 0 2 2986 3030 169297870 169297914 8.520000e-09 73.1
21 TraesCS1B01G290200 chr4D 90.854 164 12 2 3721 3882 75266747 75266909 3.720000e-52 217.0
22 TraesCS1B01G290200 chr6D 89.474 171 14 4 3722 3890 467084019 467084187 4.810000e-51 213.0
23 TraesCS1B01G290200 chr3A 75.520 433 59 33 1218 1604 612527718 612527287 1.060000e-37 169.0
24 TraesCS1B01G290200 chr3A 81.448 221 20 9 4916 5130 612523805 612523600 1.770000e-35 161.0
25 TraesCS1B01G290200 chr3A 90.789 76 3 3 1102 1174 612527872 612527798 1.410000e-16 99.0
26 TraesCS1B01G290200 chr3B 74.946 467 61 39 1185 1604 624320945 624320488 4.910000e-36 163.0
27 TraesCS1B01G290200 chr7B 97.619 42 0 1 2986 3026 559531979 559532020 3.060000e-08 71.3
28 TraesCS1B01G290200 chr5B 95.349 43 1 1 2989 3030 578372100 578372058 3.960000e-07 67.6
29 TraesCS1B01G290200 chr5B 95.349 43 1 1 2989 3030 578388418 578388376 3.960000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G290200 chr1B 507305270 507311396 6126 False 11315.000000 11315 100.000000 1 6127 1 chr1B.!!$F1 6126
1 TraesCS1B01G290200 chr1A 479540029 479546047 6018 False 2524.966667 4879 90.999667 1 6124 3 chr1A.!!$F3 6123
2 TraesCS1B01G290200 chr1D 378697784 378704322 6538 False 2621.000000 3980 91.149333 1 6124 3 chr1D.!!$F2 6123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 994 0.178935 CCATCCCTCCCTCTCTCTCC 60.179 65.000 0.0 0.0 0.00 3.71 F
1053 1690 1.818363 CGAGCACCAGCATCAGCAT 60.818 57.895 0.0 0.0 45.49 3.79 F
2560 3226 2.613977 CCAAGCTGTGATCTCCTCGTTT 60.614 50.000 0.0 0.0 0.00 3.60 F
4046 4815 0.108585 ACTGGACGAGGCATTGTTGT 59.891 50.000 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2641 3307 1.630369 TGGCTCTGTATGGTGCTCTTT 59.370 47.619 0.00 0.0 0.00 2.52 R
2981 3647 2.159128 TGTCGTGGTTTAGTTCAACGGA 60.159 45.455 0.00 0.0 0.00 4.69 R
4470 5242 0.851469 AGATCATCAGGCAGGCCATT 59.149 50.000 13.63 0.0 38.92 3.16 R
5873 6688 0.319383 CGATCAAGGAGCGGAGATGG 60.319 60.000 0.00 0.0 37.82 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 176 5.491982 AGTATGGGAGACACAAATCTCAAC 58.508 41.667 5.23 0.00 46.00 3.18
181 257 6.354130 GTCCTAAGCCATGTGGAGTTTTATA 58.646 40.000 2.55 0.00 37.39 0.98
186 262 3.632145 GCCATGTGGAGTTTTATAGGGTG 59.368 47.826 2.55 0.00 37.39 4.61
209 286 4.201950 GCACACTGACAACAGAAATCAAGT 60.202 41.667 0.00 0.00 46.03 3.16
210 287 5.007626 GCACACTGACAACAGAAATCAAGTA 59.992 40.000 0.00 0.00 46.03 2.24
212 289 7.293745 CACACTGACAACAGAAATCAAGTATC 58.706 38.462 0.00 0.00 46.03 2.24
216 293 8.509690 ACTGACAACAGAAATCAAGTATCAATG 58.490 33.333 0.00 0.00 46.03 2.82
217 294 7.819644 TGACAACAGAAATCAAGTATCAATGG 58.180 34.615 0.00 0.00 0.00 3.16
219 296 7.596494 ACAACAGAAATCAAGTATCAATGGTG 58.404 34.615 0.00 0.00 0.00 4.17
221 298 7.383102 ACAGAAATCAAGTATCAATGGTGTC 57.617 36.000 0.00 0.00 0.00 3.67
223 300 7.448161 ACAGAAATCAAGTATCAATGGTGTCAA 59.552 33.333 0.00 0.00 0.00 3.18
239 316 6.412362 GGTGTCAACCATATGATCTAGTCT 57.588 41.667 3.65 0.00 46.75 3.24
240 317 6.451393 GGTGTCAACCATATGATCTAGTCTC 58.549 44.000 3.65 0.00 46.75 3.36
241 318 6.040955 GGTGTCAACCATATGATCTAGTCTCA 59.959 42.308 3.65 0.00 46.75 3.27
242 319 6.920758 GTGTCAACCATATGATCTAGTCTCAC 59.079 42.308 3.65 1.18 0.00 3.51
245 322 7.812191 GTCAACCATATGATCTAGTCTCACATC 59.188 40.741 3.65 0.00 0.00 3.06
246 323 7.506938 TCAACCATATGATCTAGTCTCACATCA 59.493 37.037 3.65 0.00 0.00 3.07
249 326 8.312564 ACCATATGATCTAGTCTCACATCAATG 58.687 37.037 3.65 0.00 0.00 2.82
250 327 7.764901 CCATATGATCTAGTCTCACATCAATGG 59.235 40.741 3.65 11.84 33.09 3.16
251 328 6.744175 ATGATCTAGTCTCACATCAATGGT 57.256 37.500 0.00 0.00 0.00 3.55
252 329 5.910614 TGATCTAGTCTCACATCAATGGTG 58.089 41.667 0.00 0.00 37.60 4.17
256 333 4.356405 AGTCTCACATCAATGGTGTCAA 57.644 40.909 0.00 0.00 37.52 3.18
257 334 4.067896 AGTCTCACATCAATGGTGTCAAC 58.932 43.478 0.00 0.00 37.52 3.18
262 339 7.712639 GTCTCACATCAATGGTGTCAACTATAT 59.287 37.037 0.00 0.00 37.52 0.86
296 391 5.670485 TGATTTCTGTTGTGAGTGTGTACT 58.330 37.500 0.00 0.00 40.66 2.73
344 439 2.108168 TCTCGTATCAAAGGGGACTGG 58.892 52.381 0.00 0.00 42.68 4.00
405 505 1.271102 GCGTCCATAAAAACCTGGCAA 59.729 47.619 0.00 0.00 0.00 4.52
842 959 1.234821 CTTCTCGATCTCCTCTCCCG 58.765 60.000 0.00 0.00 0.00 5.14
857 974 2.370445 CCCGCTTCCTGTCCTCCAT 61.370 63.158 0.00 0.00 0.00 3.41
873 994 0.178935 CCATCCCTCCCTCTCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
1053 1690 1.818363 CGAGCACCAGCATCAGCAT 60.818 57.895 0.00 0.00 45.49 3.79
1712 2349 9.553064 GGAAGAAGTGAGTTATCAATCATATGT 57.447 33.333 1.90 0.00 37.14 2.29
1876 2516 4.144297 TCCACAGCTTATTTCTTGTGCTT 58.856 39.130 0.00 0.00 0.00 3.91
1973 2616 5.049828 GCCTCACTTATTTTTGCACTGTTT 58.950 37.500 0.00 0.00 0.00 2.83
2030 2673 7.158697 TGTAAAACTAGCAGCAACTTGATCTA 58.841 34.615 0.00 0.00 0.00 1.98
2067 2710 4.621991 AGAGTTGCACACAGTAGTAGTTG 58.378 43.478 0.00 0.00 0.00 3.16
2090 2733 6.545508 TGATGAACATGAAATTAGAACAGCG 58.454 36.000 0.00 0.00 0.00 5.18
2426 3070 6.426937 TCTGTACAACTTCTTACCAAGATTGC 59.573 38.462 0.00 0.00 37.38 3.56
2440 3084 4.021192 CCAAGATTGCAGGTGTTTATTGGT 60.021 41.667 0.00 0.00 32.02 3.67
2490 3156 9.719355 TTATTATCTCTGTTCTAACACAAGCAA 57.281 29.630 0.00 0.00 34.70 3.91
2560 3226 2.613977 CCAAGCTGTGATCTCCTCGTTT 60.614 50.000 0.00 0.00 0.00 3.60
2641 3307 5.142061 TGTCGAAGCATTTCAAGTACCTA 57.858 39.130 0.00 0.00 32.67 3.08
2809 3475 2.733301 CACAACATTTGGCGGCCA 59.267 55.556 19.77 19.77 34.12 5.36
2932 3598 7.728847 TGATTTCGTGTTCATAATATGGAGG 57.271 36.000 0.00 0.00 0.00 4.30
2972 3638 7.690454 TTGAAATATACTCCCTCTGATTCCA 57.310 36.000 0.00 0.00 0.00 3.53
2981 3647 7.698163 ACTCCCTCTGATTCCATAATACTTT 57.302 36.000 0.00 0.00 0.00 2.66
2982 3648 7.740805 ACTCCCTCTGATTCCATAATACTTTC 58.259 38.462 0.00 0.00 0.00 2.62
2984 3650 5.934625 CCCTCTGATTCCATAATACTTTCCG 59.065 44.000 0.00 0.00 0.00 4.30
3026 3693 4.831710 AGTATTATGGAACGGAGGGAGTAC 59.168 45.833 0.00 0.00 0.00 2.73
3034 3701 1.003580 ACGGAGGGAGTACTTACGACA 59.996 52.381 4.69 0.00 0.00 4.35
3043 3710 6.765512 AGGGAGTACTTACGACAGTATCTTAC 59.234 42.308 0.00 0.00 31.82 2.34
3235 3902 3.942130 AGCAAACCTATGGCTTGAAAC 57.058 42.857 4.16 0.00 33.21 2.78
3279 3946 8.082242 GCTTATAAATCTTATTTTCGTGGGCAT 58.918 33.333 0.00 0.00 0.00 4.40
3295 3962 1.545428 GGCATCCACTGTCCACTGAAA 60.545 52.381 0.00 0.00 0.00 2.69
3337 4004 6.187125 ACTGTTTTAGTGCATGCAATCTAG 57.813 37.500 25.74 17.29 38.49 2.43
3360 4028 7.277174 AGTAACAGGAGAAAAGGAATTTGTG 57.723 36.000 0.00 0.00 0.00 3.33
3371 4039 1.203125 GGAATTTGTGGAAGTGGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
3372 4040 2.171003 GAATTTGTGGAAGTGGGGGAG 58.829 52.381 0.00 0.00 0.00 4.30
3373 4041 1.455822 ATTTGTGGAAGTGGGGGAGA 58.544 50.000 0.00 0.00 0.00 3.71
3374 4042 1.227249 TTTGTGGAAGTGGGGGAGAA 58.773 50.000 0.00 0.00 0.00 2.87
3375 4043 1.227249 TTGTGGAAGTGGGGGAGAAA 58.773 50.000 0.00 0.00 0.00 2.52
3376 4044 1.455822 TGTGGAAGTGGGGGAGAAAT 58.544 50.000 0.00 0.00 0.00 2.17
3390 4058 5.306394 GGGGAGAAATAAATCCTTCCGTAG 58.694 45.833 0.00 0.00 35.80 3.51
3412 4080 3.366476 GCACTAGATCTGTGTCGACTGTT 60.366 47.826 17.92 2.39 37.70 3.16
3495 4165 0.618458 TAGCATGGGTCCCACTTGAC 59.382 55.000 14.57 5.38 35.80 3.18
3497 4167 0.539438 GCATGGGTCCCACTTGACAA 60.539 55.000 14.57 0.00 35.80 3.18
3511 4181 5.140177 CACTTGACAATTAGTTTCTGACGC 58.860 41.667 0.00 0.00 0.00 5.19
3545 4239 3.031736 TCTAACTTAGGCTAGGCACCAG 58.968 50.000 19.70 12.75 0.00 4.00
3550 4244 2.478872 TAGGCTAGGCACCAGATCTT 57.521 50.000 19.70 0.00 0.00 2.40
3552 4246 2.043227 AGGCTAGGCACCAGATCTTAC 58.957 52.381 19.70 0.00 0.00 2.34
3564 4258 3.865745 CCAGATCTTACAACGATGTCACC 59.134 47.826 0.00 0.00 41.05 4.02
3566 4260 4.327357 CAGATCTTACAACGATGTCACCAC 59.673 45.833 0.00 0.00 41.05 4.16
3587 4283 0.591170 TCTGCCGCTTTTGTTAGTGC 59.409 50.000 0.00 0.00 0.00 4.40
3588 4284 0.387239 CTGCCGCTTTTGTTAGTGCC 60.387 55.000 0.00 0.00 0.00 5.01
3599 4295 3.134574 TGTTAGTGCCGGTCAATTCTT 57.865 42.857 1.90 0.00 0.00 2.52
3601 4297 1.448985 TAGTGCCGGTCAATTCTTGC 58.551 50.000 1.90 0.00 0.00 4.01
3602 4298 0.537143 AGTGCCGGTCAATTCTTGCA 60.537 50.000 1.90 0.00 0.00 4.08
3606 4302 1.474077 GCCGGTCAATTCTTGCAGATT 59.526 47.619 1.90 0.00 0.00 2.40
3612 4308 4.565564 GGTCAATTCTTGCAGATTTGATGC 59.434 41.667 18.04 11.13 42.73 3.91
3628 4324 2.026542 TGATGCTTTGATGGAGACTGCT 60.027 45.455 0.00 0.00 0.00 4.24
3629 4325 2.574006 TGCTTTGATGGAGACTGCTT 57.426 45.000 0.00 0.00 0.00 3.91
3698 4460 9.726438 ATCAGCTTTCTGTATTTTGTTACTACT 57.274 29.630 0.00 0.00 41.10 2.57
3699 4461 9.555727 TCAGCTTTCTGTATTTTGTTACTACTT 57.444 29.630 0.00 0.00 41.10 2.24
3705 4467 9.991906 TTCTGTATTTTGTTACTACTTACTGCT 57.008 29.630 0.00 0.00 0.00 4.24
3708 4470 9.362539 TGTATTTTGTTACTACTTACTGCTAGC 57.637 33.333 8.10 8.10 0.00 3.42
3709 4471 9.362539 GTATTTTGTTACTACTTACTGCTAGCA 57.637 33.333 18.22 18.22 0.00 3.49
3710 4472 8.842358 ATTTTGTTACTACTTACTGCTAGCAA 57.158 30.769 19.86 1.11 0.00 3.91
3711 4473 8.842358 TTTTGTTACTACTTACTGCTAGCAAT 57.158 30.769 19.86 12.10 0.00 3.56
3712 4474 9.932207 TTTTGTTACTACTTACTGCTAGCAATA 57.068 29.630 19.86 10.84 0.00 1.90
3726 4488 9.877178 ACTGCTAGCAATATAATTATGTACTCC 57.123 33.333 19.86 0.48 0.00 3.85
3727 4489 9.319143 CTGCTAGCAATATAATTATGTACTCCC 57.681 37.037 19.86 0.19 0.00 4.30
3728 4490 9.046846 TGCTAGCAATATAATTATGTACTCCCT 57.953 33.333 16.84 0.00 0.00 4.20
3729 4491 9.535878 GCTAGCAATATAATTATGTACTCCCTC 57.464 37.037 10.63 0.00 0.00 4.30
3731 4493 7.556844 AGCAATATAATTATGTACTCCCTCCG 58.443 38.462 8.28 0.00 0.00 4.63
3732 4494 7.180408 AGCAATATAATTATGTACTCCCTCCGT 59.820 37.037 8.28 0.00 0.00 4.69
3733 4495 7.822822 GCAATATAATTATGTACTCCCTCCGTT 59.177 37.037 8.28 0.00 0.00 4.44
3734 4496 9.720769 CAATATAATTATGTACTCCCTCCGTTT 57.279 33.333 8.28 0.00 0.00 3.60
3735 4497 9.939802 AATATAATTATGTACTCCCTCCGTTTC 57.060 33.333 8.28 0.00 0.00 2.78
3736 4498 5.952347 AATTATGTACTCCCTCCGTTTCT 57.048 39.130 0.00 0.00 0.00 2.52
3737 4499 8.716674 ATAATTATGTACTCCCTCCGTTTCTA 57.283 34.615 0.00 0.00 0.00 2.10
3738 4500 7.427989 AATTATGTACTCCCTCCGTTTCTAA 57.572 36.000 0.00 0.00 0.00 2.10
3739 4501 6.855763 TTATGTACTCCCTCCGTTTCTAAA 57.144 37.500 0.00 0.00 0.00 1.85
3740 4502 5.952347 ATGTACTCCCTCCGTTTCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
3741 4503 8.537728 TTATGTACTCCCTCCGTTTCTAAATA 57.462 34.615 0.00 0.00 0.00 1.40
3742 4504 7.613551 ATGTACTCCCTCCGTTTCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
3743 4505 8.716674 ATGTACTCCCTCCGTTTCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
3744 4506 8.537728 TGTACTCCCTCCGTTTCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
3745 4507 8.636213 TGTACTCCCTCCGTTTCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3746 4508 7.909485 ACTCCCTCCGTTTCTAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3747 4509 7.724287 ACTCCCTCCGTTTCTAAATATAAGAC 58.276 38.462 0.00 0.00 0.00 3.01
3748 4510 7.564292 ACTCCCTCCGTTTCTAAATATAAGACT 59.436 37.037 0.00 0.00 0.00 3.24
3749 4511 8.315220 TCCCTCCGTTTCTAAATATAAGACTT 57.685 34.615 0.00 0.00 0.00 3.01
3750 4512 8.765517 TCCCTCCGTTTCTAAATATAAGACTTT 58.234 33.333 0.00 0.00 0.00 2.66
3751 4513 9.392259 CCCTCCGTTTCTAAATATAAGACTTTT 57.608 33.333 0.00 0.00 0.00 2.27
3824 4586 8.029642 AGTGTAAATTCACTCATTTTACTCCG 57.970 34.615 0.00 0.00 44.07 4.63
3825 4587 7.660208 AGTGTAAATTCACTCATTTTACTCCGT 59.340 33.333 0.00 0.00 44.07 4.69
3826 4588 8.928733 GTGTAAATTCACTCATTTTACTCCGTA 58.071 33.333 0.00 0.00 36.96 4.02
3827 4589 9.661563 TGTAAATTCACTCATTTTACTCCGTAT 57.338 29.630 0.00 0.00 36.96 3.06
3828 4590 9.916397 GTAAATTCACTCATTTTACTCCGTATG 57.084 33.333 0.00 0.00 34.51 2.39
3829 4591 8.561738 AAATTCACTCATTTTACTCCGTATGT 57.438 30.769 0.00 0.00 0.00 2.29
3830 4592 9.661563 AAATTCACTCATTTTACTCCGTATGTA 57.338 29.630 0.00 0.00 0.00 2.29
3831 4593 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
3832 4594 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
3833 4595 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
3834 4596 6.696148 CACTCATTTTACTCCGTATGTAGTCC 59.304 42.308 0.00 0.00 0.00 3.85
3835 4597 5.824429 TCATTTTACTCCGTATGTAGTCCG 58.176 41.667 0.00 0.00 0.00 4.79
3836 4598 5.357878 TCATTTTACTCCGTATGTAGTCCGT 59.642 40.000 0.00 0.00 0.00 4.69
3837 4599 6.542005 TCATTTTACTCCGTATGTAGTCCGTA 59.458 38.462 0.00 0.00 0.00 4.02
3838 4600 6.942532 TTTTACTCCGTATGTAGTCCGTAT 57.057 37.500 0.00 0.00 0.00 3.06
3839 4601 6.942532 TTTACTCCGTATGTAGTCCGTATT 57.057 37.500 0.00 0.00 0.00 1.89
3840 4602 6.942532 TTACTCCGTATGTAGTCCGTATTT 57.057 37.500 0.00 0.00 0.00 1.40
3841 4603 5.179045 ACTCCGTATGTAGTCCGTATTTG 57.821 43.478 0.00 0.00 0.00 2.32
3842 4604 4.883585 ACTCCGTATGTAGTCCGTATTTGA 59.116 41.667 0.00 0.00 0.00 2.69
3843 4605 5.357878 ACTCCGTATGTAGTCCGTATTTGAA 59.642 40.000 0.00 0.00 0.00 2.69
3844 4606 6.127647 ACTCCGTATGTAGTCCGTATTTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
3845 4607 6.808829 TCCGTATGTAGTCCGTATTTGAAAT 58.191 36.000 0.00 0.00 0.00 2.17
3846 4608 6.919662 TCCGTATGTAGTCCGTATTTGAAATC 59.080 38.462 0.00 0.00 0.00 2.17
3847 4609 6.921857 CCGTATGTAGTCCGTATTTGAAATCT 59.078 38.462 0.00 0.00 0.00 2.40
3848 4610 7.114529 CCGTATGTAGTCCGTATTTGAAATCTC 59.885 40.741 0.00 0.00 0.00 2.75
3849 4611 7.861372 CGTATGTAGTCCGTATTTGAAATCTCT 59.139 37.037 0.00 0.00 0.00 3.10
3853 4615 9.932207 TGTAGTCCGTATTTGAAATCTCTAAAA 57.068 29.630 0.00 0.00 0.00 1.52
3856 4618 9.449719 AGTCCGTATTTGAAATCTCTAAAATGT 57.550 29.630 0.00 0.00 0.00 2.71
3857 4619 9.704098 GTCCGTATTTGAAATCTCTAAAATGTC 57.296 33.333 0.00 0.00 0.00 3.06
3858 4620 9.667107 TCCGTATTTGAAATCTCTAAAATGTCT 57.333 29.630 0.00 0.00 0.00 3.41
3876 4638 8.904099 AAATGTCTAATATTTAGGAACGGAGG 57.096 34.615 0.00 0.00 0.00 4.30
3877 4639 6.415206 TGTCTAATATTTAGGAACGGAGGG 57.585 41.667 0.00 0.00 0.00 4.30
3878 4640 6.138263 TGTCTAATATTTAGGAACGGAGGGA 58.862 40.000 0.00 0.00 0.00 4.20
3886 4648 3.684408 AGGAACGGAGGGAGTACTATT 57.316 47.619 0.00 0.00 0.00 1.73
3888 4650 3.029570 GGAACGGAGGGAGTACTATTGT 58.970 50.000 0.00 0.00 0.00 2.71
3893 4655 6.218108 ACGGAGGGAGTACTATTGTAAAAG 57.782 41.667 0.00 0.00 0.00 2.27
3898 4660 7.548427 GGAGGGAGTACTATTGTAAAAGTTGTC 59.452 40.741 0.00 0.00 0.00 3.18
3907 4669 9.131791 ACTATTGTAAAAGTTGTCCTTTCACAT 57.868 29.630 0.00 0.00 40.27 3.21
3910 4672 8.472683 TTGTAAAAGTTGTCCTTTCACATTTG 57.527 30.769 0.00 0.00 40.27 2.32
3918 4680 9.313118 AGTTGTCCTTTCACATTTGTTTTATTC 57.687 29.630 0.00 0.00 0.00 1.75
3970 4732 6.222038 TGGACTTCTATACCTGTGTTCATC 57.778 41.667 0.00 0.00 0.00 2.92
3974 4736 7.064728 GGACTTCTATACCTGTGTTCATCAAAC 59.935 40.741 0.00 0.00 38.43 2.93
4008 4777 6.455646 GCGTGAGATACTGAGTTTAAATGTGG 60.456 42.308 0.00 0.00 0.00 4.17
4031 4800 8.727910 GTGGTTTATCTTAACCTTCTTAACTGG 58.272 37.037 7.03 0.00 46.28 4.00
4034 4803 8.654215 GTTTATCTTAACCTTCTTAACTGGACG 58.346 37.037 0.00 0.00 0.00 4.79
4036 4805 6.022163 TCTTAACCTTCTTAACTGGACGAG 57.978 41.667 0.00 0.00 0.00 4.18
4037 4806 3.679824 AACCTTCTTAACTGGACGAGG 57.320 47.619 0.00 0.00 0.00 4.63
4038 4807 1.275573 ACCTTCTTAACTGGACGAGGC 59.724 52.381 0.00 0.00 0.00 4.70
4039 4808 1.275291 CCTTCTTAACTGGACGAGGCA 59.725 52.381 0.00 0.00 0.00 4.75
4040 4809 2.093447 CCTTCTTAACTGGACGAGGCAT 60.093 50.000 0.00 0.00 0.00 4.40
4041 4810 3.600388 CTTCTTAACTGGACGAGGCATT 58.400 45.455 0.00 0.00 0.00 3.56
4042 4811 2.972625 TCTTAACTGGACGAGGCATTG 58.027 47.619 0.00 0.00 0.00 2.82
4043 4812 2.301870 TCTTAACTGGACGAGGCATTGT 59.698 45.455 0.00 0.00 0.00 2.71
4044 4813 2.851263 TAACTGGACGAGGCATTGTT 57.149 45.000 0.00 0.00 0.00 2.83
4045 4814 1.238439 AACTGGACGAGGCATTGTTG 58.762 50.000 0.00 0.00 0.00 3.33
4046 4815 0.108585 ACTGGACGAGGCATTGTTGT 59.891 50.000 0.00 0.00 0.00 3.32
4047 4816 1.346395 ACTGGACGAGGCATTGTTGTA 59.654 47.619 0.00 0.00 0.00 2.41
4048 4817 2.002586 CTGGACGAGGCATTGTTGTAG 58.997 52.381 0.00 0.00 0.00 2.74
4049 4818 1.621317 TGGACGAGGCATTGTTGTAGA 59.379 47.619 0.00 0.00 0.00 2.59
4050 4819 2.271800 GGACGAGGCATTGTTGTAGAG 58.728 52.381 0.00 0.00 0.00 2.43
4051 4820 2.271800 GACGAGGCATTGTTGTAGAGG 58.728 52.381 0.00 0.00 0.00 3.69
4052 4821 1.066143 ACGAGGCATTGTTGTAGAGGG 60.066 52.381 0.00 0.00 0.00 4.30
4053 4822 1.383523 GAGGCATTGTTGTAGAGGGC 58.616 55.000 0.00 0.00 0.00 5.19
4054 4823 0.995024 AGGCATTGTTGTAGAGGGCT 59.005 50.000 0.00 0.00 0.00 5.19
4055 4824 2.170607 GAGGCATTGTTGTAGAGGGCTA 59.829 50.000 0.00 0.00 0.00 3.93
4056 4825 2.576191 AGGCATTGTTGTAGAGGGCTAA 59.424 45.455 0.00 0.00 0.00 3.09
4057 4826 3.010138 AGGCATTGTTGTAGAGGGCTAAA 59.990 43.478 0.00 0.00 0.00 1.85
4058 4827 3.128764 GGCATTGTTGTAGAGGGCTAAAC 59.871 47.826 0.00 0.00 0.00 2.01
4059 4828 4.010349 GCATTGTTGTAGAGGGCTAAACT 58.990 43.478 0.00 0.00 0.00 2.66
4060 4829 4.459337 GCATTGTTGTAGAGGGCTAAACTT 59.541 41.667 0.00 0.00 0.00 2.66
4083 4854 9.178758 ACTTTTGTCATAAGATCCTAAATGACC 57.821 33.333 17.66 7.05 44.86 4.02
4085 4856 9.699410 TTTTGTCATAAGATCCTAAATGACCAT 57.301 29.630 17.66 0.00 44.86 3.55
4106 4877 6.712095 ACCATAACACATAATGACATGCTAGG 59.288 38.462 0.00 0.00 0.00 3.02
4129 4900 7.567458 AGGTTTTAGGTCTAAATGGCGTAATA 58.433 34.615 4.28 0.00 35.27 0.98
4131 4902 8.287503 GGTTTTAGGTCTAAATGGCGTAATATG 58.712 37.037 4.28 0.00 35.27 1.78
4146 4918 8.516234 TGGCGTAATATGACTTAAAACAATGTT 58.484 29.630 0.00 0.00 0.00 2.71
4175 4947 4.584327 TTTTTGGTTGAAGCTTCTAGCC 57.416 40.909 28.67 24.20 43.77 3.93
4176 4948 3.508845 TTTGGTTGAAGCTTCTAGCCT 57.491 42.857 28.67 0.00 43.77 4.58
4177 4949 2.479566 TGGTTGAAGCTTCTAGCCTG 57.520 50.000 28.67 0.00 43.77 4.85
4178 4950 1.699634 TGGTTGAAGCTTCTAGCCTGT 59.300 47.619 28.67 0.00 43.77 4.00
4179 4951 2.903784 TGGTTGAAGCTTCTAGCCTGTA 59.096 45.455 28.67 13.58 43.77 2.74
4180 4952 3.326588 TGGTTGAAGCTTCTAGCCTGTAA 59.673 43.478 28.67 13.27 43.77 2.41
4181 4953 4.019321 TGGTTGAAGCTTCTAGCCTGTAAT 60.019 41.667 28.67 0.00 43.77 1.89
4184 4956 6.768381 GGTTGAAGCTTCTAGCCTGTAATTAT 59.232 38.462 26.09 0.00 43.77 1.28
4185 4957 7.283354 GGTTGAAGCTTCTAGCCTGTAATTATT 59.717 37.037 26.09 0.00 43.77 1.40
4186 4958 8.678199 GTTGAAGCTTCTAGCCTGTAATTATTT 58.322 33.333 26.09 0.00 43.77 1.40
4188 4960 9.326413 TGAAGCTTCTAGCCTGTAATTATTTAC 57.674 33.333 26.09 1.36 43.77 2.01
4189 4961 9.326413 GAAGCTTCTAGCCTGTAATTATTTACA 57.674 33.333 19.44 9.28 43.77 2.41
4201 4973 7.881142 TGTAATTATTTACAGTGCTTGTGCTT 58.119 30.769 6.19 0.00 42.10 3.91
4211 4983 2.092524 GTGCTTGTGCTTGTTTGTGTTG 59.907 45.455 0.00 0.00 40.48 3.33
4222 4994 2.294074 GTTTGTGTTGCTGTCTACCCA 58.706 47.619 0.00 0.00 0.00 4.51
4223 4995 2.884639 GTTTGTGTTGCTGTCTACCCAT 59.115 45.455 0.00 0.00 0.00 4.00
4224 4996 2.949177 TGTGTTGCTGTCTACCCATT 57.051 45.000 0.00 0.00 0.00 3.16
4225 4997 2.503331 TGTGTTGCTGTCTACCCATTG 58.497 47.619 0.00 0.00 0.00 2.82
4226 4998 2.158682 TGTGTTGCTGTCTACCCATTGT 60.159 45.455 0.00 0.00 0.00 2.71
4230 5002 4.261801 GTTGCTGTCTACCCATTGTATGT 58.738 43.478 0.00 0.00 0.00 2.29
4249 5021 5.981088 ATGTTTCTGTATTTGCCATCACA 57.019 34.783 0.00 0.00 0.00 3.58
4255 5027 7.701539 TTCTGTATTTGCCATCACACTAATT 57.298 32.000 0.00 0.00 0.00 1.40
4256 5028 7.701539 TCTGTATTTGCCATCACACTAATTT 57.298 32.000 0.00 0.00 0.00 1.82
4257 5029 7.537715 TCTGTATTTGCCATCACACTAATTTG 58.462 34.615 0.00 0.00 0.00 2.32
4259 5031 7.665690 TGTATTTGCCATCACACTAATTTGTT 58.334 30.769 0.00 0.00 0.00 2.83
4351 5123 4.218200 TCAGGCAAGTAACCATTTCATGTG 59.782 41.667 0.00 0.00 0.00 3.21
4354 5126 4.158384 GCAAGTAACCATTTCATGTGTCG 58.842 43.478 0.00 0.00 0.00 4.35
4355 5127 4.320202 GCAAGTAACCATTTCATGTGTCGT 60.320 41.667 0.00 0.00 0.00 4.34
4359 5131 2.571212 ACCATTTCATGTGTCGTGTGT 58.429 42.857 0.00 0.00 0.00 3.72
4363 5135 4.261155 CCATTTCATGTGTCGTGTGTTTCT 60.261 41.667 0.00 0.00 0.00 2.52
4364 5136 5.049749 CCATTTCATGTGTCGTGTGTTTCTA 60.050 40.000 0.00 0.00 0.00 2.10
4365 5137 5.398176 TTTCATGTGTCGTGTGTTTCTAC 57.602 39.130 0.00 0.00 0.00 2.59
4366 5138 4.316205 TCATGTGTCGTGTGTTTCTACT 57.684 40.909 0.00 0.00 0.00 2.57
4367 5139 4.689071 TCATGTGTCGTGTGTTTCTACTT 58.311 39.130 0.00 0.00 0.00 2.24
4368 5140 5.113383 TCATGTGTCGTGTGTTTCTACTTT 58.887 37.500 0.00 0.00 0.00 2.66
4422 5194 0.698238 AAGGCCTGTTAGCACCATGA 59.302 50.000 5.69 0.00 0.00 3.07
4424 5196 1.285962 AGGCCTGTTAGCACCATGAAT 59.714 47.619 3.11 0.00 0.00 2.57
4431 5203 6.591834 GCCTGTTAGCACCATGAATATACTAG 59.408 42.308 0.00 0.00 0.00 2.57
4433 5205 8.803235 CCTGTTAGCACCATGAATATACTAGTA 58.197 37.037 4.77 4.77 0.00 1.82
4434 5206 9.627395 CTGTTAGCACCATGAATATACTAGTAC 57.373 37.037 4.31 0.00 0.00 2.73
4490 5262 0.400975 ATGGCCTGCCTGATGATCTC 59.599 55.000 9.97 0.00 36.94 2.75
4633 5405 0.737715 GACAAGAATCAGCTCGGCGT 60.738 55.000 6.85 0.00 0.00 5.68
4728 5500 0.250597 AAGCAGCAGCATGTCACAGA 60.251 50.000 3.17 0.00 45.49 3.41
4729 5501 0.250597 AGCAGCAGCATGTCACAGAA 60.251 50.000 3.17 0.00 45.49 3.02
4734 5506 1.071299 AGCATGTCACAGAACCGCA 59.929 52.632 0.00 0.00 0.00 5.69
4794 5572 2.173669 CCGATGACCCACGACATGC 61.174 63.158 0.00 0.00 0.00 4.06
4824 5602 3.408020 GCTTCGCGTACAACGGCA 61.408 61.111 5.77 0.00 42.82 5.69
4855 5633 4.892965 GCACCACCAGCACCACCA 62.893 66.667 0.00 0.00 0.00 4.17
4857 5635 4.562425 ACCACCAGCACCACCACG 62.562 66.667 0.00 0.00 0.00 4.94
4874 5652 2.879907 GGCATTGCACTGTCGCAT 59.120 55.556 11.39 0.00 42.62 4.73
4880 5658 2.124570 GCACTGTCGCATCCCCAT 60.125 61.111 0.00 0.00 0.00 4.00
4883 5661 0.812811 CACTGTCGCATCCCCATCAG 60.813 60.000 0.00 0.00 0.00 2.90
4884 5662 1.890979 CTGTCGCATCCCCATCAGC 60.891 63.158 0.00 0.00 0.00 4.26
4885 5663 2.190313 GTCGCATCCCCATCAGCA 59.810 61.111 0.00 0.00 0.00 4.41
4888 5666 2.599597 GCATCCCCATCAGCAGGT 59.400 61.111 0.00 0.00 0.00 4.00
4889 5667 1.527844 GCATCCCCATCAGCAGGTC 60.528 63.158 0.00 0.00 0.00 3.85
4891 5669 1.383109 ATCCCCATCAGCAGGTCGA 60.383 57.895 0.00 0.00 0.00 4.20
4892 5670 0.982852 ATCCCCATCAGCAGGTCGAA 60.983 55.000 0.00 0.00 0.00 3.71
4893 5671 1.153289 CCCCATCAGCAGGTCGAAG 60.153 63.158 0.00 0.00 0.00 3.79
4894 5672 1.153289 CCCATCAGCAGGTCGAAGG 60.153 63.158 0.00 0.00 0.00 3.46
4895 5673 1.817099 CCATCAGCAGGTCGAAGGC 60.817 63.158 0.00 0.00 0.00 4.35
4896 5674 2.169789 CATCAGCAGGTCGAAGGCG 61.170 63.158 0.00 0.00 39.35 5.52
4897 5675 4.742201 TCAGCAGGTCGAAGGCGC 62.742 66.667 0.00 0.00 37.46 6.53
5090 5868 1.228124 CCGGCACTTCACCAAGGAA 60.228 57.895 0.00 0.00 33.37 3.36
5149 5927 3.501445 TCGATGAACAAACACATGCATGA 59.499 39.130 32.75 7.56 0.00 3.07
5166 5944 0.332293 TGATTGCTCCATTGCTGGGA 59.668 50.000 0.00 0.00 43.34 4.37
5169 5947 0.332293 TTGCTCCATTGCTGGGATCA 59.668 50.000 0.00 0.00 43.34 2.92
5198 5976 3.692576 GCAACAACATGCAGATGAGATC 58.307 45.455 0.00 0.00 45.70 2.75
5245 6033 7.355101 TGTACTAGAAGTAGGATGATGAAGGT 58.645 38.462 0.00 0.00 30.12 3.50
5248 6036 8.240267 ACTAGAAGTAGGATGATGAAGGTAAC 57.760 38.462 0.00 0.00 0.00 2.50
5249 6037 7.839705 ACTAGAAGTAGGATGATGAAGGTAACA 59.160 37.037 0.00 0.00 41.41 2.41
5251 6039 7.560368 AGAAGTAGGATGATGAAGGTAACAAG 58.440 38.462 0.00 0.00 41.41 3.16
5253 6041 4.510167 AGGATGATGAAGGTAACAAGGG 57.490 45.455 0.00 0.00 41.41 3.95
5256 6044 2.790433 TGATGAAGGTAACAAGGGTGC 58.210 47.619 0.00 0.00 41.41 5.01
5257 6045 2.107378 TGATGAAGGTAACAAGGGTGCA 59.893 45.455 0.00 0.00 41.41 4.57
5259 6047 3.237268 TGAAGGTAACAAGGGTGCATT 57.763 42.857 0.00 0.00 41.41 3.56
5260 6048 2.890311 TGAAGGTAACAAGGGTGCATTG 59.110 45.455 0.00 0.00 41.41 2.82
5261 6049 1.923356 AGGTAACAAGGGTGCATTGG 58.077 50.000 3.73 0.00 41.41 3.16
5263 6051 2.377193 AGGTAACAAGGGTGCATTGGTA 59.623 45.455 3.73 0.00 41.41 3.25
5264 6052 2.490509 GGTAACAAGGGTGCATTGGTAC 59.509 50.000 15.39 15.39 45.82 3.34
5265 6053 2.373335 AACAAGGGTGCATTGGTACA 57.627 45.000 3.73 0.00 31.76 2.90
5266 6054 1.616159 ACAAGGGTGCATTGGTACAC 58.384 50.000 3.73 0.00 39.29 2.90
5278 6066 4.377021 CATTGGTACACCGTACATATGCT 58.623 43.478 1.58 0.00 39.29 3.79
5422 6210 8.900983 ATTTGTTCTGATCCTAGATTAAGCTC 57.099 34.615 0.00 0.00 0.00 4.09
5441 6232 5.477913 AGCTCCCTTATTAACCCTGTATCT 58.522 41.667 0.00 0.00 0.00 1.98
5458 6249 1.926561 TCTCCATTGATCGACTTGCG 58.073 50.000 0.00 0.00 42.69 4.85
5604 6399 1.160137 GTGAGTGCCGAAGCTTCAAT 58.840 50.000 25.47 6.78 40.80 2.57
5641 6437 4.744795 AGAATATGACTGTGGACTGGAC 57.255 45.455 0.00 0.00 0.00 4.02
5672 6472 7.729881 AGATAGCCTTATCTTCTCTGATCTTGT 59.270 37.037 0.00 0.00 42.67 3.16
5687 6487 5.168569 TGATCTTGTGTAGTTAGCCTTTCG 58.831 41.667 0.00 0.00 0.00 3.46
5721 6521 7.407337 CGTATTAAACTAAGAAATCAGGTGGC 58.593 38.462 0.00 0.00 0.00 5.01
5724 6524 1.906574 ACTAAGAAATCAGGTGGCGGA 59.093 47.619 0.00 0.00 0.00 5.54
5736 6537 1.373748 TGGCGGAGTGTTAACGAGC 60.374 57.895 0.26 2.02 0.00 5.03
5860 6675 1.817099 CTGTCAAGGGCTGATCCGC 60.817 63.158 0.00 0.00 36.14 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.442969 TGTCATGGTAACGAATAAAACTGTCTT 59.557 33.333 0.00 0.00 42.51 3.01
41 42 7.124347 TGTCATGGTAACGAATAAAACTGTC 57.876 36.000 0.00 0.00 42.51 3.51
69 70 5.698741 TGTGTCTCCCATACTCATCAATT 57.301 39.130 0.00 0.00 0.00 2.32
123 199 7.360361 AGACTTAAACAAAATCTAAGGCAACG 58.640 34.615 0.00 0.00 46.39 4.10
155 231 0.811616 CTCCACATGGCTTAGGACGC 60.812 60.000 0.00 0.00 34.44 5.19
181 257 0.464373 CTGTTGTCAGTGTGCACCCT 60.464 55.000 15.69 4.83 36.97 4.34
186 262 3.969117 TGATTTCTGTTGTCAGTGTGC 57.031 42.857 0.00 0.00 41.91 4.57
216 293 6.040955 TGAGACTAGATCATATGGTTGACACC 59.959 42.308 2.13 0.00 44.56 4.16
217 294 6.920758 GTGAGACTAGATCATATGGTTGACAC 59.079 42.308 2.13 0.00 0.00 3.67
219 296 7.043961 TGTGAGACTAGATCATATGGTTGAC 57.956 40.000 2.13 0.00 0.00 3.18
221 298 7.664758 TGATGTGAGACTAGATCATATGGTTG 58.335 38.462 13.60 0.00 29.77 3.77
223 300 7.846101 TTGATGTGAGACTAGATCATATGGT 57.154 36.000 13.60 0.00 31.44 3.55
225 302 8.312564 ACCATTGATGTGAGACTAGATCATATG 58.687 37.037 13.60 0.00 31.44 1.78
227 304 7.288621 ACACCATTGATGTGAGACTAGATCATA 59.711 37.037 0.00 0.00 31.44 2.15
229 306 5.423290 ACACCATTGATGTGAGACTAGATCA 59.577 40.000 0.00 0.00 0.00 2.92
230 307 5.911752 ACACCATTGATGTGAGACTAGATC 58.088 41.667 0.00 0.00 0.00 2.75
233 310 5.077134 TGACACCATTGATGTGAGACTAG 57.923 43.478 0.00 0.00 0.00 2.57
234 311 5.012046 AGTTGACACCATTGATGTGAGACTA 59.988 40.000 0.00 0.00 0.00 2.59
236 313 4.067896 AGTTGACACCATTGATGTGAGAC 58.932 43.478 0.00 0.00 0.00 3.36
237 314 4.356405 AGTTGACACCATTGATGTGAGA 57.644 40.909 0.00 0.00 0.00 3.27
239 316 7.563906 TCATATAGTTGACACCATTGATGTGA 58.436 34.615 0.00 0.00 0.00 3.58
240 317 7.790823 TCATATAGTTGACACCATTGATGTG 57.209 36.000 0.00 0.00 0.00 3.21
241 318 8.435187 AGATCATATAGTTGACACCATTGATGT 58.565 33.333 0.00 0.00 0.00 3.06
242 319 8.843885 AGATCATATAGTTGACACCATTGATG 57.156 34.615 0.00 0.00 0.00 3.07
262 339 9.159364 CTCACAACAGAAATCAAGATTAGATCA 57.841 33.333 0.00 0.00 0.00 2.92
296 391 6.826668 TCTTCAGTGACTTGAGTTTTATGGA 58.173 36.000 0.00 0.00 0.00 3.41
305 400 5.694006 ACGAGAAAATCTTCAGTGACTTGAG 59.306 40.000 0.00 0.00 33.64 3.02
308 403 7.378966 TGATACGAGAAAATCTTCAGTGACTT 58.621 34.615 0.00 0.00 33.64 3.01
378 473 0.614294 TTTTTATGGACGCCGAGGGA 59.386 50.000 0.00 0.00 0.00 4.20
761 878 4.003788 CTGGCAGGGGTTCGTCGT 62.004 66.667 6.61 0.00 0.00 4.34
816 933 1.729470 GGAGATCGAGAAGGCAGCGA 61.729 60.000 0.00 0.00 38.51 4.93
842 959 0.985490 AGGGATGGAGGACAGGAAGC 60.985 60.000 0.00 0.00 0.00 3.86
857 974 2.015726 GGGGAGAGAGAGGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
873 994 3.232279 CCCTGGAGAGAGTAAGGGG 57.768 63.158 0.00 0.00 44.94 4.79
1042 1679 1.265365 CTGATGCTGATGCTGATGCTG 59.735 52.381 0.00 0.00 40.48 4.41
1043 1680 1.598882 CTGATGCTGATGCTGATGCT 58.401 50.000 0.00 0.00 40.48 3.79
1044 1681 0.039978 GCTGATGCTGATGCTGATGC 60.040 55.000 0.00 0.00 40.48 3.91
1045 1682 1.265365 CTGCTGATGCTGATGCTGATG 59.735 52.381 0.00 0.00 40.01 3.07
1046 1683 1.598882 CTGCTGATGCTGATGCTGAT 58.401 50.000 0.00 0.00 40.01 2.90
1047 1684 1.095807 GCTGCTGATGCTGATGCTGA 61.096 55.000 0.00 0.00 40.01 4.26
1053 1690 1.673337 GTGGTGCTGCTGATGCTGA 60.673 57.895 0.00 0.00 40.01 4.26
1107 1744 2.125512 GGCACGTGGTAGAGCTGG 60.126 66.667 18.88 0.00 0.00 4.85
1353 1990 1.655885 GGTTCGAGGAGGACGAGGAC 61.656 65.000 0.00 0.00 40.72 3.85
1452 2089 2.501610 CCCAGGAACCTAGAGCGC 59.498 66.667 0.00 0.00 0.00 5.92
1653 2290 1.077993 AGCCTAGTCTTCCTCCACTGT 59.922 52.381 0.00 0.00 0.00 3.55
1712 2349 7.808279 TGAAGAGAAGGGAATTTAGAGGTAA 57.192 36.000 0.00 0.00 0.00 2.85
1714 2351 6.657875 CATGAAGAGAAGGGAATTTAGAGGT 58.342 40.000 0.00 0.00 0.00 3.85
1876 2516 5.885352 ACATATCAACCACCATCAAATCGAA 59.115 36.000 0.00 0.00 0.00 3.71
1973 2616 6.254589 CCAAAAGAAAATAACTGTTCAACGCA 59.745 34.615 0.00 0.00 0.00 5.24
2030 2673 4.180057 GCAACTCTTTGATCATCGACTCT 58.820 43.478 0.00 0.00 34.24 3.24
2067 2710 6.775088 TCGCTGTTCTAATTTCATGTTCATC 58.225 36.000 0.00 0.00 0.00 2.92
2129 2773 6.830873 ATCTTAGAAAGCAGCAACTTGAAT 57.169 33.333 0.00 0.00 0.00 2.57
2426 3070 4.052159 TGTTGCAACCAATAAACACCTG 57.948 40.909 26.14 0.00 32.75 4.00
2440 3084 1.953686 GGACTGCCTTAGTTGTTGCAA 59.046 47.619 0.00 0.00 40.53 4.08
2490 3156 5.049828 GCTTGCAAACCTACAAGATTGTTT 58.950 37.500 3.14 0.00 44.89 2.83
2545 3211 3.399330 GGTTTCAAACGAGGAGATCACA 58.601 45.455 0.00 0.00 0.00 3.58
2596 3262 3.531207 CGGAGAGCGATGGAGGCA 61.531 66.667 0.00 0.00 0.00 4.75
2641 3307 1.630369 TGGCTCTGTATGGTGCTCTTT 59.370 47.619 0.00 0.00 0.00 2.52
2833 3499 2.733593 GCGCGAAGAACCGACACT 60.734 61.111 12.10 0.00 0.00 3.55
2947 3613 8.101309 TGGAATCAGAGGGAGTATATTTCAAA 57.899 34.615 0.00 0.00 0.00 2.69
2972 3638 8.724229 GTGGTTTAGTTCAACGGAAAGTATTAT 58.276 33.333 0.00 0.00 34.13 1.28
2981 3647 2.159128 TGTCGTGGTTTAGTTCAACGGA 60.159 45.455 0.00 0.00 0.00 4.69
2982 3648 2.203401 TGTCGTGGTTTAGTTCAACGG 58.797 47.619 0.00 0.00 0.00 4.44
2984 3650 4.870221 ACTTGTCGTGGTTTAGTTCAAC 57.130 40.909 0.00 0.00 0.00 3.18
3026 3693 6.541641 AGGTACAGGTAAGATACTGTCGTAAG 59.458 42.308 0.03 0.00 44.08 2.34
3034 3701 3.385111 GCTGCAGGTACAGGTAAGATACT 59.615 47.826 17.12 0.00 38.16 2.12
3043 3710 2.437359 GCCAGCTGCAGGTACAGG 60.437 66.667 19.71 16.81 40.77 4.00
3166 3833 1.895798 TCCCATGTCTCGGATCTATGC 59.104 52.381 0.00 0.00 0.00 3.14
3231 3898 5.866503 CTTTCAGTAAAGCAAACGGTTTC 57.133 39.130 2.51 0.00 35.98 2.78
3279 3946 2.622942 GCAATTTTCAGTGGACAGTGGA 59.377 45.455 7.25 0.00 32.72 4.02
3315 3982 6.187125 ACTAGATTGCATGCACTAAAACAG 57.813 37.500 22.58 11.18 0.00 3.16
3335 4002 7.447238 CCACAAATTCCTTTTCTCCTGTTACTA 59.553 37.037 0.00 0.00 0.00 1.82
3336 4003 6.265422 CCACAAATTCCTTTTCTCCTGTTACT 59.735 38.462 0.00 0.00 0.00 2.24
3337 4004 6.264518 TCCACAAATTCCTTTTCTCCTGTTAC 59.735 38.462 0.00 0.00 0.00 2.50
3360 4028 4.079154 AGGATTTATTTCTCCCCCACTTCC 60.079 45.833 0.00 0.00 31.49 3.46
3371 4039 5.990668 AGTGCTACGGAAGGATTTATTTCT 58.009 37.500 0.00 0.00 0.00 2.52
3372 4040 7.208080 TCTAGTGCTACGGAAGGATTTATTTC 58.792 38.462 0.00 0.00 0.00 2.17
3373 4041 7.120923 TCTAGTGCTACGGAAGGATTTATTT 57.879 36.000 0.00 0.00 0.00 1.40
3374 4042 6.726490 TCTAGTGCTACGGAAGGATTTATT 57.274 37.500 0.00 0.00 0.00 1.40
3375 4043 6.722129 AGATCTAGTGCTACGGAAGGATTTAT 59.278 38.462 0.00 0.00 0.00 1.40
3376 4044 6.016192 CAGATCTAGTGCTACGGAAGGATTTA 60.016 42.308 0.00 0.00 0.00 1.40
3390 4058 2.162608 ACAGTCGACACAGATCTAGTGC 59.837 50.000 19.50 13.26 40.59 4.40
3412 4080 6.487668 TCTTCTTATCATACGGTACCGAATCA 59.512 38.462 39.52 20.95 42.83 2.57
3495 4165 2.668457 AGAGCGCGTCAGAAACTAATTG 59.332 45.455 8.43 0.00 0.00 2.32
3497 4167 2.164624 AGAGAGCGCGTCAGAAACTAAT 59.835 45.455 8.43 0.00 0.00 1.73
3511 4181 4.505922 CCTAAGTTAGATGCAAAGAGAGCG 59.494 45.833 11.66 0.00 33.85 5.03
3545 4239 4.242475 TGTGGTGACATCGTTGTAAGATC 58.758 43.478 0.00 0.00 46.14 2.75
3564 4258 2.226437 ACTAACAAAAGCGGCAGATGTG 59.774 45.455 1.45 0.00 0.00 3.21
3566 4260 2.855180 CACTAACAAAAGCGGCAGATG 58.145 47.619 1.45 0.00 0.00 2.90
3599 4295 3.764972 TCCATCAAAGCATCAAATCTGCA 59.235 39.130 0.00 0.00 42.15 4.41
3601 4297 5.357314 AGTCTCCATCAAAGCATCAAATCTG 59.643 40.000 0.00 0.00 0.00 2.90
3602 4298 5.357314 CAGTCTCCATCAAAGCATCAAATCT 59.643 40.000 0.00 0.00 0.00 2.40
3606 4302 2.751259 GCAGTCTCCATCAAAGCATCAA 59.249 45.455 0.00 0.00 0.00 2.57
3612 4308 2.555325 TGCAAAGCAGTCTCCATCAAAG 59.445 45.455 0.00 0.00 33.32 2.77
3701 4463 9.319143 GGGAGTACATAATTATATTGCTAGCAG 57.681 37.037 18.45 4.62 0.00 4.24
3702 4464 9.046846 AGGGAGTACATAATTATATTGCTAGCA 57.953 33.333 14.93 14.93 0.00 3.49
3703 4465 9.535878 GAGGGAGTACATAATTATATTGCTAGC 57.464 37.037 8.10 8.10 0.00 3.42
3705 4467 8.692710 CGGAGGGAGTACATAATTATATTGCTA 58.307 37.037 0.00 0.00 0.00 3.49
3706 4468 7.180408 ACGGAGGGAGTACATAATTATATTGCT 59.820 37.037 0.00 0.00 0.00 3.91
3707 4469 7.328737 ACGGAGGGAGTACATAATTATATTGC 58.671 38.462 0.00 0.00 0.00 3.56
3708 4470 9.720769 AAACGGAGGGAGTACATAATTATATTG 57.279 33.333 0.00 0.00 0.00 1.90
3709 4471 9.939802 GAAACGGAGGGAGTACATAATTATATT 57.060 33.333 0.00 0.00 0.00 1.28
3710 4472 9.322769 AGAAACGGAGGGAGTACATAATTATAT 57.677 33.333 0.00 0.00 0.00 0.86
3711 4473 8.716674 AGAAACGGAGGGAGTACATAATTATA 57.283 34.615 0.00 0.00 0.00 0.98
3712 4474 7.613551 AGAAACGGAGGGAGTACATAATTAT 57.386 36.000 0.00 0.00 0.00 1.28
3713 4475 8.537728 TTAGAAACGGAGGGAGTACATAATTA 57.462 34.615 0.00 0.00 0.00 1.40
3714 4476 5.952347 AGAAACGGAGGGAGTACATAATT 57.048 39.130 0.00 0.00 0.00 1.40
3715 4477 7.427989 TTTAGAAACGGAGGGAGTACATAAT 57.572 36.000 0.00 0.00 0.00 1.28
3716 4478 6.855763 TTTAGAAACGGAGGGAGTACATAA 57.144 37.500 0.00 0.00 0.00 1.90
3717 4479 8.716674 ATATTTAGAAACGGAGGGAGTACATA 57.283 34.615 0.00 0.00 0.00 2.29
3718 4480 5.952347 ATTTAGAAACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
3719 4481 8.537728 TTATATTTAGAAACGGAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
3720 4482 8.854117 TCTTATATTTAGAAACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
3721 4483 8.854117 GTCTTATATTTAGAAACGGAGGGAGTA 58.146 37.037 0.00 0.00 0.00 2.59
3722 4484 7.564292 AGTCTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
3723 4485 7.953752 AGTCTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
3724 4486 7.909485 AGTCTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
3725 4487 8.959705 AAAGTCTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
3800 4562 7.803724 ACGGAGTAAAATGAGTGAATTTACAC 58.196 34.615 2.93 0.00 41.94 2.90
3801 4563 7.972832 ACGGAGTAAAATGAGTGAATTTACA 57.027 32.000 2.93 0.00 41.94 2.41
3820 4582 5.428496 TCAAATACGGACTACATACGGAG 57.572 43.478 0.00 0.00 0.00 4.63
3821 4583 5.833406 TTCAAATACGGACTACATACGGA 57.167 39.130 0.00 0.00 0.00 4.69
3822 4584 6.921857 AGATTTCAAATACGGACTACATACGG 59.078 38.462 0.00 0.00 0.00 4.02
3823 4585 7.861372 AGAGATTTCAAATACGGACTACATACG 59.139 37.037 0.00 0.00 0.00 3.06
3827 4589 9.932207 TTTTAGAGATTTCAAATACGGACTACA 57.068 29.630 0.00 0.00 0.00 2.74
3830 4592 9.449719 ACATTTTAGAGATTTCAAATACGGACT 57.550 29.630 0.00 0.00 0.00 3.85
3831 4593 9.704098 GACATTTTAGAGATTTCAAATACGGAC 57.296 33.333 0.00 0.00 0.00 4.79
3832 4594 9.667107 AGACATTTTAGAGATTTCAAATACGGA 57.333 29.630 0.00 0.00 0.00 4.69
3850 4612 9.338622 CCTCCGTTCCTAAATATTAGACATTTT 57.661 33.333 0.00 0.00 0.00 1.82
3851 4613 7.937394 CCCTCCGTTCCTAAATATTAGACATTT 59.063 37.037 0.00 0.00 0.00 2.32
3852 4614 7.291651 TCCCTCCGTTCCTAAATATTAGACATT 59.708 37.037 0.00 0.00 0.00 2.71
3853 4615 6.785963 TCCCTCCGTTCCTAAATATTAGACAT 59.214 38.462 0.00 0.00 0.00 3.06
3854 4616 6.138263 TCCCTCCGTTCCTAAATATTAGACA 58.862 40.000 0.00 0.00 0.00 3.41
3855 4617 6.267242 ACTCCCTCCGTTCCTAAATATTAGAC 59.733 42.308 0.00 0.00 0.00 2.59
3856 4618 6.379579 ACTCCCTCCGTTCCTAAATATTAGA 58.620 40.000 0.00 0.00 0.00 2.10
3857 4619 6.667558 ACTCCCTCCGTTCCTAAATATTAG 57.332 41.667 0.00 0.00 0.00 1.73
3858 4620 7.300658 AGTACTCCCTCCGTTCCTAAATATTA 58.699 38.462 0.00 0.00 0.00 0.98
3859 4621 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3860 4622 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3861 4623 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3862 4624 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3863 4625 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3864 4626 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
3865 4627 4.079558 ACAATAGTACTCCCTCCGTTCCTA 60.080 45.833 0.00 0.00 0.00 2.94
3866 4628 3.297736 CAATAGTACTCCCTCCGTTCCT 58.702 50.000 0.00 0.00 0.00 3.36
3867 4629 3.029570 ACAATAGTACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 0.00 3.62
3868 4630 5.841957 TTACAATAGTACTCCCTCCGTTC 57.158 43.478 0.00 0.00 0.00 3.95
3869 4631 6.212187 ACTTTTACAATAGTACTCCCTCCGTT 59.788 38.462 0.00 0.00 0.00 4.44
3870 4632 5.718607 ACTTTTACAATAGTACTCCCTCCGT 59.281 40.000 0.00 0.00 0.00 4.69
3871 4633 6.218108 ACTTTTACAATAGTACTCCCTCCG 57.782 41.667 0.00 0.00 0.00 4.63
3872 4634 7.392418 ACAACTTTTACAATAGTACTCCCTCC 58.608 38.462 0.00 0.00 0.00 4.30
3873 4635 7.548427 GGACAACTTTTACAATAGTACTCCCTC 59.452 40.741 0.00 0.00 0.00 4.30
3874 4636 7.237055 AGGACAACTTTTACAATAGTACTCCCT 59.763 37.037 0.00 0.00 0.00 4.20
3875 4637 7.392418 AGGACAACTTTTACAATAGTACTCCC 58.608 38.462 0.00 0.00 0.00 4.30
3876 4638 8.843885 AAGGACAACTTTTACAATAGTACTCC 57.156 34.615 0.00 0.00 35.35 3.85
3893 4655 8.547894 GGAATAAAACAAATGTGAAAGGACAAC 58.452 33.333 0.00 0.00 0.00 3.32
3925 4687 9.909644 GTCCATATACACTACCAAATACTAGTG 57.090 37.037 5.39 3.76 43.75 2.74
3929 4691 9.435570 AGAAGTCCATATACACTACCAAATACT 57.564 33.333 0.00 0.00 0.00 2.12
3934 4696 9.305555 GGTATAGAAGTCCATATACACTACCAA 57.694 37.037 5.12 0.00 36.84 3.67
3937 4699 9.517868 ACAGGTATAGAAGTCCATATACACTAC 57.482 37.037 5.12 0.00 36.84 2.73
3938 4700 9.516546 CACAGGTATAGAAGTCCATATACACTA 57.483 37.037 5.12 0.00 36.84 2.74
3939 4701 8.005388 ACACAGGTATAGAAGTCCATATACACT 58.995 37.037 5.12 0.00 36.84 3.55
3940 4702 8.179509 ACACAGGTATAGAAGTCCATATACAC 57.820 38.462 5.12 0.00 36.84 2.90
3941 4703 8.777578 AACACAGGTATAGAAGTCCATATACA 57.222 34.615 5.12 0.00 36.84 2.29
3942 4704 8.857098 TGAACACAGGTATAGAAGTCCATATAC 58.143 37.037 0.00 0.00 35.18 1.47
3943 4705 9.601810 ATGAACACAGGTATAGAAGTCCATATA 57.398 33.333 0.00 0.00 0.00 0.86
3944 4706 7.914427 TGAACACAGGTATAGAAGTCCATAT 57.086 36.000 0.00 0.00 0.00 1.78
3945 4707 7.563556 TGATGAACACAGGTATAGAAGTCCATA 59.436 37.037 0.00 0.00 0.00 2.74
3946 4708 6.384015 TGATGAACACAGGTATAGAAGTCCAT 59.616 38.462 0.00 0.00 0.00 3.41
3947 4709 5.719563 TGATGAACACAGGTATAGAAGTCCA 59.280 40.000 0.00 0.00 0.00 4.02
3948 4710 6.222038 TGATGAACACAGGTATAGAAGTCC 57.778 41.667 0.00 0.00 0.00 3.85
3984 4746 6.590292 ACCACATTTAAACTCAGTATCTCACG 59.410 38.462 0.00 0.00 0.00 4.35
4008 4777 8.654215 CGTCCAGTTAAGAAGGTTAAGATAAAC 58.346 37.037 0.00 0.00 0.00 2.01
4012 4781 6.351117 CCTCGTCCAGTTAAGAAGGTTAAGAT 60.351 42.308 0.00 0.00 0.00 2.40
4015 4784 4.562143 GCCTCGTCCAGTTAAGAAGGTTAA 60.562 45.833 0.00 0.00 0.00 2.01
4019 4788 1.275291 TGCCTCGTCCAGTTAAGAAGG 59.725 52.381 0.00 0.00 0.00 3.46
4031 4800 2.271800 CCTCTACAACAATGCCTCGTC 58.728 52.381 0.00 0.00 0.00 4.20
4034 4803 1.065126 AGCCCTCTACAACAATGCCTC 60.065 52.381 0.00 0.00 0.00 4.70
4036 4805 2.710096 TAGCCCTCTACAACAATGCC 57.290 50.000 0.00 0.00 0.00 4.40
4037 4806 4.010349 AGTTTAGCCCTCTACAACAATGC 58.990 43.478 0.00 0.00 0.00 3.56
4038 4807 6.575162 AAAGTTTAGCCCTCTACAACAATG 57.425 37.500 0.00 0.00 0.00 2.82
4039 4808 6.549736 ACAAAAGTTTAGCCCTCTACAACAAT 59.450 34.615 0.00 0.00 0.00 2.71
4040 4809 5.889289 ACAAAAGTTTAGCCCTCTACAACAA 59.111 36.000 0.00 0.00 0.00 2.83
4041 4810 5.442391 ACAAAAGTTTAGCCCTCTACAACA 58.558 37.500 0.00 0.00 0.00 3.33
4042 4811 5.529800 TGACAAAAGTTTAGCCCTCTACAAC 59.470 40.000 0.00 0.00 0.00 3.32
4043 4812 5.686753 TGACAAAAGTTTAGCCCTCTACAA 58.313 37.500 0.00 0.00 0.00 2.41
4044 4813 5.298989 TGACAAAAGTTTAGCCCTCTACA 57.701 39.130 0.00 0.00 0.00 2.74
4045 4814 7.822822 TCTTATGACAAAAGTTTAGCCCTCTAC 59.177 37.037 0.00 0.00 0.00 2.59
4046 4815 7.913789 TCTTATGACAAAAGTTTAGCCCTCTA 58.086 34.615 0.00 0.00 0.00 2.43
4047 4816 6.779860 TCTTATGACAAAAGTTTAGCCCTCT 58.220 36.000 0.00 0.00 0.00 3.69
4048 4817 7.201741 GGATCTTATGACAAAAGTTTAGCCCTC 60.202 40.741 0.00 0.00 0.00 4.30
4049 4818 6.603599 GGATCTTATGACAAAAGTTTAGCCCT 59.396 38.462 0.00 0.00 0.00 5.19
4050 4819 6.603599 AGGATCTTATGACAAAAGTTTAGCCC 59.396 38.462 0.00 0.00 0.00 5.19
4051 4820 7.631717 AGGATCTTATGACAAAAGTTTAGCC 57.368 36.000 0.00 0.00 0.00 3.93
4057 4826 9.178758 GGTCATTTAGGATCTTATGACAAAAGT 57.821 33.333 17.64 0.00 45.38 2.66
4058 4827 9.177608 TGGTCATTTAGGATCTTATGACAAAAG 57.822 33.333 17.64 0.00 45.38 2.27
4059 4828 9.699410 ATGGTCATTTAGGATCTTATGACAAAA 57.301 29.630 17.64 7.38 45.38 2.44
4083 4854 7.734924 ACCTAGCATGTCATTATGTGTTATG 57.265 36.000 0.00 0.00 0.00 1.90
4085 4856 8.574251 AAAACCTAGCATGTCATTATGTGTTA 57.426 30.769 0.00 0.00 0.00 2.41
4087 4858 7.283127 CCTAAAACCTAGCATGTCATTATGTGT 59.717 37.037 0.00 0.00 0.00 3.72
4106 4877 9.048446 TCATATTACGCCATTTAGACCTAAAAC 57.952 33.333 6.34 0.22 38.38 2.43
4157 4929 2.106511 ACAGGCTAGAAGCTTCAACCAA 59.893 45.455 27.57 7.18 41.99 3.67
4158 4930 1.699634 ACAGGCTAGAAGCTTCAACCA 59.300 47.619 27.57 9.22 41.99 3.67
4159 4931 2.481289 ACAGGCTAGAAGCTTCAACC 57.519 50.000 27.57 22.96 41.99 3.77
4160 4932 7.793927 ATAATTACAGGCTAGAAGCTTCAAC 57.206 36.000 27.57 15.67 41.99 3.18
4161 4933 8.807948 AAATAATTACAGGCTAGAAGCTTCAA 57.192 30.769 27.57 11.21 41.99 2.69
4162 4934 9.326413 GTAAATAATTACAGGCTAGAAGCTTCA 57.674 33.333 27.57 12.90 40.15 3.02
4176 4948 7.447374 AGCACAAGCACTGTAAATAATTACA 57.553 32.000 3.44 3.44 45.11 2.41
4177 4949 7.807907 ACAAGCACAAGCACTGTAAATAATTAC 59.192 33.333 0.00 0.00 45.49 1.89
4178 4950 7.881142 ACAAGCACAAGCACTGTAAATAATTA 58.119 30.769 0.00 0.00 45.49 1.40
4179 4951 6.748132 ACAAGCACAAGCACTGTAAATAATT 58.252 32.000 0.00 0.00 45.49 1.40
4180 4952 6.331369 ACAAGCACAAGCACTGTAAATAAT 57.669 33.333 0.00 0.00 45.49 1.28
4181 4953 5.766150 ACAAGCACAAGCACTGTAAATAA 57.234 34.783 0.00 0.00 45.49 1.40
4184 4956 4.172505 CAAACAAGCACAAGCACTGTAAA 58.827 39.130 0.00 0.00 45.49 2.01
4185 4957 3.192422 ACAAACAAGCACAAGCACTGTAA 59.808 39.130 0.00 0.00 45.49 2.41
4186 4958 2.752354 ACAAACAAGCACAAGCACTGTA 59.248 40.909 0.00 0.00 45.49 2.74
4188 4960 1.921887 CACAAACAAGCACAAGCACTG 59.078 47.619 0.00 0.00 45.49 3.66
4189 4961 1.545582 ACACAAACAAGCACAAGCACT 59.454 42.857 0.00 0.00 45.49 4.40
4190 4962 1.994916 ACACAAACAAGCACAAGCAC 58.005 45.000 0.00 0.00 45.49 4.40
4195 4967 1.271934 ACAGCAACACAAACAAGCACA 59.728 42.857 0.00 0.00 0.00 4.57
4201 4973 2.294074 GGGTAGACAGCAACACAAACA 58.706 47.619 0.00 0.00 0.00 2.83
4211 4983 5.065218 CAGAAACATACAATGGGTAGACAGC 59.935 44.000 0.00 0.00 34.92 4.40
4222 4994 7.975616 GTGATGGCAAATACAGAAACATACAAT 59.024 33.333 0.00 0.00 0.00 2.71
4223 4995 7.040132 TGTGATGGCAAATACAGAAACATACAA 60.040 33.333 0.00 0.00 0.00 2.41
4224 4996 6.432472 TGTGATGGCAAATACAGAAACATACA 59.568 34.615 0.00 0.00 0.00 2.29
4225 4997 6.747280 GTGTGATGGCAAATACAGAAACATAC 59.253 38.462 0.00 0.00 0.00 2.39
4226 4998 6.658816 AGTGTGATGGCAAATACAGAAACATA 59.341 34.615 0.00 0.00 0.00 2.29
4230 5002 7.701539 ATTAGTGTGATGGCAAATACAGAAA 57.298 32.000 0.00 0.00 0.00 2.52
4249 5021 4.649218 ACCTGGAAAGCACAACAAATTAGT 59.351 37.500 0.00 0.00 0.00 2.24
4255 5027 2.303175 GGTACCTGGAAAGCACAACAA 58.697 47.619 4.06 0.00 0.00 2.83
4256 5028 1.975660 GGTACCTGGAAAGCACAACA 58.024 50.000 4.06 0.00 0.00 3.33
4310 5082 3.600388 CTGATTCCTCGTTAAGCCTGTT 58.400 45.455 0.00 0.00 0.00 3.16
4351 5123 8.758715 AGTTACATTAAAGTAGAAACACACGAC 58.241 33.333 0.00 0.00 0.00 4.34
4363 5135 8.892723 CATGGCATGAAGAGTTACATTAAAGTA 58.107 33.333 22.91 0.00 0.00 2.24
4364 5136 7.629222 GCATGGCATGAAGAGTTACATTAAAGT 60.629 37.037 30.69 0.00 0.00 2.66
4365 5137 6.694411 GCATGGCATGAAGAGTTACATTAAAG 59.306 38.462 30.69 0.00 0.00 1.85
4366 5138 6.377996 AGCATGGCATGAAGAGTTACATTAAA 59.622 34.615 30.69 0.00 0.00 1.52
4367 5139 5.887598 AGCATGGCATGAAGAGTTACATTAA 59.112 36.000 30.69 0.00 0.00 1.40
4368 5140 5.297527 CAGCATGGCATGAAGAGTTACATTA 59.702 40.000 30.69 0.00 0.00 1.90
4401 5173 0.967380 ATGGTGCTAACAGGCCTTGC 60.967 55.000 0.00 6.16 0.00 4.01
4407 5179 7.671302 ACTAGTATATTCATGGTGCTAACAGG 58.329 38.462 0.00 0.00 0.00 4.00
4452 5224 6.954102 AGGCCATTTTTCCAAAGTCTATAACT 59.046 34.615 5.01 0.00 41.10 2.24
4453 5225 7.035612 CAGGCCATTTTTCCAAAGTCTATAAC 58.964 38.462 5.01 0.00 0.00 1.89
4455 5227 5.127031 GCAGGCCATTTTTCCAAAGTCTATA 59.873 40.000 5.01 0.00 0.00 1.31
4456 5228 4.081476 GCAGGCCATTTTTCCAAAGTCTAT 60.081 41.667 5.01 0.00 0.00 1.98
4457 5229 3.258123 GCAGGCCATTTTTCCAAAGTCTA 59.742 43.478 5.01 0.00 0.00 2.59
4458 5230 2.037641 GCAGGCCATTTTTCCAAAGTCT 59.962 45.455 5.01 0.00 0.00 3.24
4459 5231 2.416747 GCAGGCCATTTTTCCAAAGTC 58.583 47.619 5.01 0.00 0.00 3.01
4466 5238 1.826720 TCATCAGGCAGGCCATTTTTC 59.173 47.619 13.63 0.00 38.92 2.29
4470 5242 0.851469 AGATCATCAGGCAGGCCATT 59.149 50.000 13.63 0.00 38.92 3.16
4473 5245 1.301558 CGAGATCATCAGGCAGGCC 60.302 63.158 0.97 0.97 0.00 5.19
4490 5262 1.271934 TGCCCACCATGAAATGTTTCG 59.728 47.619 0.00 0.00 44.81 3.46
4697 5469 2.501602 GCTGCTTTGCCCTTGGTGT 61.502 57.895 0.00 0.00 0.00 4.16
4700 5472 2.654877 CTGCTGCTTTGCCCTTGG 59.345 61.111 0.00 0.00 0.00 3.61
4743 5515 2.406401 GATGTGCCGATGTGCAGC 59.594 61.111 0.00 0.00 43.02 5.25
4744 5516 1.712018 CTGGATGTGCCGATGTGCAG 61.712 60.000 0.00 0.00 43.02 4.41
4745 5517 1.746239 CTGGATGTGCCGATGTGCA 60.746 57.895 0.00 0.00 40.66 4.57
4746 5518 1.434622 CTCTGGATGTGCCGATGTGC 61.435 60.000 0.00 0.00 40.66 4.57
4747 5519 1.434622 GCTCTGGATGTGCCGATGTG 61.435 60.000 0.00 0.00 40.66 3.21
4748 5520 1.153289 GCTCTGGATGTGCCGATGT 60.153 57.895 0.00 0.00 40.66 3.06
4794 5572 2.266055 GAAGCTCACCTGTCCCGG 59.734 66.667 0.00 0.00 0.00 5.73
4839 5617 2.906897 GTGGTGGTGCTGGTGGTG 60.907 66.667 0.00 0.00 0.00 4.17
4840 5618 4.562425 CGTGGTGGTGCTGGTGGT 62.562 66.667 0.00 0.00 0.00 4.16
4847 5625 4.722855 GCAATGCCGTGGTGGTGC 62.723 66.667 0.00 0.00 41.21 5.01
4854 5632 2.174107 CGACAGTGCAATGCCGTG 59.826 61.111 14.79 2.28 0.00 4.94
4855 5633 3.726517 GCGACAGTGCAATGCCGT 61.727 61.111 22.97 0.00 34.15 5.68
4874 5652 1.612146 TTCGACCTGCTGATGGGGA 60.612 57.895 0.00 0.00 0.00 4.81
4880 5658 4.742201 GCGCCTTCGACCTGCTGA 62.742 66.667 0.00 0.00 38.10 4.26
5149 5927 1.063492 TGATCCCAGCAATGGAGCAAT 60.063 47.619 4.86 0.00 44.76 3.56
5166 5944 3.780902 CATGTTGTTGCATGCTGATGAT 58.219 40.909 20.33 1.15 39.59 2.45
5198 5976 0.955428 ACACGTGGCCAGCATACAAG 60.955 55.000 21.57 0.00 0.00 3.16
5245 6033 3.150767 GTGTACCAATGCACCCTTGTTA 58.849 45.455 0.00 0.00 35.55 2.41
5253 6041 1.798283 TGTACGGTGTACCAATGCAC 58.202 50.000 4.78 0.00 40.47 4.57
5256 6044 4.377021 AGCATATGTACGGTGTACCAATG 58.623 43.478 4.29 8.78 35.14 2.82
5257 6045 4.682778 AGCATATGTACGGTGTACCAAT 57.317 40.909 4.29 0.00 35.14 3.16
5259 6047 3.702548 AGAAGCATATGTACGGTGTACCA 59.297 43.478 4.29 0.00 35.14 3.25
5260 6048 4.296690 GAGAAGCATATGTACGGTGTACC 58.703 47.826 4.29 0.00 0.00 3.34
5261 6049 3.973135 CGAGAAGCATATGTACGGTGTAC 59.027 47.826 4.29 0.22 0.00 2.90
5263 6051 2.426024 ACGAGAAGCATATGTACGGTGT 59.574 45.455 4.29 0.00 0.00 4.16
5264 6052 2.789339 CACGAGAAGCATATGTACGGTG 59.211 50.000 4.29 2.56 0.00 4.94
5265 6053 2.426024 ACACGAGAAGCATATGTACGGT 59.574 45.455 4.29 0.00 0.00 4.83
5266 6054 3.079960 ACACGAGAAGCATATGTACGG 57.920 47.619 4.29 1.91 0.00 4.02
5267 6055 4.904724 GTCTACACGAGAAGCATATGTACG 59.095 45.833 4.29 6.17 35.37 3.67
5278 6066 2.297698 TTCCAGGGTCTACACGAGAA 57.702 50.000 0.00 0.00 35.37 2.87
5316 6104 1.616374 GCTCTCTATGTAGCCCCACTC 59.384 57.143 0.00 0.00 32.40 3.51
5371 6159 2.430465 AGAACTGCATGCTACAACAGG 58.570 47.619 20.33 1.69 34.40 4.00
5422 6210 6.704056 ATGGAGATACAGGGTTAATAAGGG 57.296 41.667 0.00 0.00 0.00 3.95
5604 6399 8.914011 AGTCATATTCTAGTGCTACAATACACA 58.086 33.333 0.00 0.00 39.30 3.72
5641 6437 8.806429 TCAGAGAAGATAAGGCTATCTATCTG 57.194 38.462 22.90 22.90 46.18 2.90
5672 6472 3.328382 ACATGCGAAAGGCTAACTACA 57.672 42.857 0.00 0.00 44.05 2.74
5687 6487 7.775397 TTCTTAGTTTAATACGGGTACATGC 57.225 36.000 0.00 0.00 0.00 4.06
5721 6521 1.189403 GATCGCTCGTTAACACTCCG 58.811 55.000 6.39 2.83 0.00 4.63
5724 6524 3.299340 ACAAGATCGCTCGTTAACACT 57.701 42.857 6.39 0.00 0.00 3.55
5736 6537 4.212847 CCATCTAAGGATGCAACAAGATCG 59.787 45.833 0.00 0.00 45.73 3.69
5873 6688 0.319383 CGATCAAGGAGCGGAGATGG 60.319 60.000 0.00 0.00 37.82 3.51
5962 6777 1.362224 TTCTTTCACCCTGGGGAGAG 58.638 55.000 18.88 15.03 36.32 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.