Multiple sequence alignment - TraesCS1B01G289300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G289300 | chr1B | 100.000 | 5463 | 0 | 0 | 1 | 5463 | 504097856 | 504092394 | 0.000000e+00 | 10089 |
1 | TraesCS1B01G289300 | chr1D | 92.049 | 2830 | 133 | 41 | 1897 | 4711 | 377194606 | 377191854 | 0.000000e+00 | 3895 |
2 | TraesCS1B01G289300 | chr1D | 91.989 | 1835 | 101 | 23 | 10 | 1814 | 377196423 | 377194605 | 0.000000e+00 | 2532 |
3 | TraesCS1B01G289300 | chr1D | 89.607 | 356 | 19 | 9 | 5108 | 5463 | 377191390 | 377191053 | 2.340000e-118 | 436 |
4 | TraesCS1B01G289300 | chr1D | 84.211 | 418 | 34 | 12 | 4696 | 5098 | 377191832 | 377191432 | 1.440000e-100 | 377 |
5 | TraesCS1B01G289300 | chr1A | 93.519 | 1944 | 92 | 14 | 1897 | 3830 | 477738344 | 477736425 | 0.000000e+00 | 2861 |
6 | TraesCS1B01G289300 | chr1A | 90.702 | 1581 | 96 | 22 | 269 | 1814 | 477739907 | 477738343 | 0.000000e+00 | 2058 |
7 | TraesCS1B01G289300 | chr1A | 83.959 | 985 | 93 | 30 | 3858 | 4817 | 477736331 | 477735387 | 0.000000e+00 | 883 |
8 | TraesCS1B01G289300 | chr1A | 79.679 | 187 | 25 | 9 | 5218 | 5402 | 477735122 | 477734947 | 7.430000e-24 | 122 |
9 | TraesCS1B01G289300 | chr4B | 96.809 | 94 | 2 | 1 | 1813 | 1905 | 237031170 | 237031077 | 7.330000e-34 | 156 |
10 | TraesCS1B01G289300 | chr4B | 90.265 | 113 | 5 | 6 | 1813 | 1922 | 6009933 | 6010042 | 5.700000e-30 | 143 |
11 | TraesCS1B01G289300 | chr4A | 94.175 | 103 | 4 | 2 | 1807 | 1907 | 607427298 | 607427400 | 7.330000e-34 | 156 |
12 | TraesCS1B01G289300 | chr4A | 94.059 | 101 | 2 | 4 | 1809 | 1907 | 4152059 | 4151961 | 3.410000e-32 | 150 |
13 | TraesCS1B01G289300 | chr4D | 94.118 | 102 | 2 | 4 | 1809 | 1908 | 421421008 | 421420909 | 9.480000e-33 | 152 |
14 | TraesCS1B01G289300 | chr2B | 92.661 | 109 | 3 | 4 | 1813 | 1919 | 303097351 | 303097246 | 9.480000e-33 | 152 |
15 | TraesCS1B01G289300 | chr7A | 92.523 | 107 | 2 | 5 | 1813 | 1917 | 272502843 | 272502741 | 1.230000e-31 | 148 |
16 | TraesCS1B01G289300 | chr5B | 91.743 | 109 | 6 | 3 | 1807 | 1914 | 330847748 | 330847854 | 1.230000e-31 | 148 |
17 | TraesCS1B01G289300 | chr2A | 90.909 | 110 | 8 | 2 | 1807 | 1916 | 659614585 | 659614692 | 4.410000e-31 | 147 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G289300 | chr1B | 504092394 | 504097856 | 5462 | True | 10089 | 10089 | 100.00000 | 1 | 5463 | 1 | chr1B.!!$R1 | 5462 |
1 | TraesCS1B01G289300 | chr1D | 377191053 | 377196423 | 5370 | True | 1810 | 3895 | 89.46400 | 10 | 5463 | 4 | chr1D.!!$R1 | 5453 |
2 | TraesCS1B01G289300 | chr1A | 477734947 | 477739907 | 4960 | True | 1481 | 2861 | 86.96475 | 269 | 5402 | 4 | chr1A.!!$R1 | 5133 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
248 | 257 | 0.107800 | TCCTCAGTAGACGAGACGGG | 60.108 | 60.000 | 0.00 | 0.0 | 31.84 | 5.28 | F |
301 | 314 | 0.766131 | TAAACACCCGAAAGCCTCCA | 59.234 | 50.000 | 0.00 | 0.0 | 0.00 | 3.86 | F |
1039 | 1073 | 1.219393 | GAGGCTTCCAAGGTCTCCG | 59.781 | 63.158 | 0.00 | 0.0 | 0.00 | 4.63 | F |
1935 | 1985 | 1.933181 | CTGTTTGTCGACTTGCTGTCA | 59.067 | 47.619 | 17.92 | 5.7 | 45.60 | 3.58 | F |
3400 | 3460 | 1.531423 | ATGTGCTTGAAGTGCTCCTG | 58.469 | 50.000 | 0.00 | 0.0 | 0.00 | 3.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1638 | 1678 | 0.028902 | GCGACAAATTCCCGCCATAC | 59.971 | 55.0 | 7.55 | 0.00 | 42.77 | 2.39 | R |
1644 | 1684 | 0.591170 | ACACAAGCGACAAATTCCCG | 59.409 | 50.0 | 0.00 | 0.00 | 0.00 | 5.14 | R |
2168 | 2218 | 1.023513 | GTCCGAGCATGCTCAAAGCT | 61.024 | 55.0 | 38.97 | 10.84 | 42.97 | 3.74 | R |
3661 | 3722 | 0.105964 | CCTACGATTCGGGCATGGAA | 59.894 | 55.0 | 11.29 | 0.00 | 0.00 | 3.53 | R |
5379 | 5663 | 0.250640 | CCAGGCATAGGATCTGGTGC | 60.251 | 60.0 | 8.47 | 7.81 | 42.17 | 5.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 1.077930 | CACCTCCATGCACCCTCTG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
48 | 49 | 1.153489 | CTCCATGCACCCTCTGACG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
56 | 57 | 1.378646 | ACCCTCTGACGATGCGAGA | 60.379 | 57.895 | 0.00 | 0.00 | 0.00 | 4.04 |
57 | 58 | 1.064946 | CCCTCTGACGATGCGAGAC | 59.935 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
101 | 102 | 7.148000 | GCTAGGCAAAGAGAACCTTATTTCATT | 60.148 | 37.037 | 0.00 | 0.00 | 34.92 | 2.57 |
113 | 114 | 9.449719 | GAACCTTATTTCATTCTTAGGAAGTCA | 57.550 | 33.333 | 0.00 | 0.00 | 34.70 | 3.41 |
123 | 124 | 1.192146 | TAGGAAGTCACCGCTGCCTT | 61.192 | 55.000 | 0.00 | 0.00 | 41.80 | 4.35 |
124 | 125 | 2.328099 | GGAAGTCACCGCTGCCTTG | 61.328 | 63.158 | 0.00 | 0.00 | 31.25 | 3.61 |
129 | 130 | 3.297620 | CACCGCTGCCTTGCCTTT | 61.298 | 61.111 | 0.00 | 0.00 | 0.00 | 3.11 |
130 | 131 | 2.985847 | ACCGCTGCCTTGCCTTTC | 60.986 | 61.111 | 0.00 | 0.00 | 0.00 | 2.62 |
131 | 132 | 2.674380 | CCGCTGCCTTGCCTTTCT | 60.674 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
134 | 135 | 1.518056 | CGCTGCCTTGCCTTTCTGAA | 61.518 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
135 | 136 | 0.675633 | GCTGCCTTGCCTTTCTGAAA | 59.324 | 50.000 | 2.44 | 2.44 | 0.00 | 2.69 |
155 | 156 | 5.534654 | TGAAAAGGACACAAACCCTAATCAG | 59.465 | 40.000 | 0.00 | 0.00 | 31.36 | 2.90 |
194 | 197 | 0.337428 | AAAAGCATGAGCCCTCCCAT | 59.663 | 50.000 | 0.00 | 0.00 | 43.56 | 4.00 |
196 | 199 | 1.284111 | AAGCATGAGCCCTCCCATCA | 61.284 | 55.000 | 0.00 | 0.00 | 43.56 | 3.07 |
228 | 231 | 3.499737 | CCACCGCGCTTCCATGAC | 61.500 | 66.667 | 5.56 | 0.00 | 0.00 | 3.06 |
232 | 241 | 2.185350 | CGCGCTTCCATGACTCCT | 59.815 | 61.111 | 5.56 | 0.00 | 0.00 | 3.69 |
236 | 245 | 0.534412 | CGCTTCCATGACTCCTCAGT | 59.466 | 55.000 | 0.00 | 0.00 | 34.57 | 3.41 |
240 | 249 | 3.181480 | GCTTCCATGACTCCTCAGTAGAC | 60.181 | 52.174 | 0.00 | 0.00 | 30.63 | 2.59 |
244 | 253 | 3.536570 | CATGACTCCTCAGTAGACGAGA | 58.463 | 50.000 | 0.00 | 0.00 | 33.03 | 4.04 |
248 | 257 | 0.107800 | TCCTCAGTAGACGAGACGGG | 60.108 | 60.000 | 0.00 | 0.00 | 31.84 | 5.28 |
290 | 300 | 1.254026 | GCAGGAAACCCTAAACACCC | 58.746 | 55.000 | 0.00 | 0.00 | 31.47 | 4.61 |
292 | 302 | 1.072648 | CAGGAAACCCTAAACACCCGA | 59.927 | 52.381 | 0.00 | 0.00 | 31.47 | 5.14 |
301 | 314 | 0.766131 | TAAACACCCGAAAGCCTCCA | 59.234 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
314 | 327 | 1.295292 | AGCCTCCATCTTTCTAGGGGA | 59.705 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
331 | 344 | 4.470602 | AGGGGAGAAAGAAAACGACAATT | 58.529 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
332 | 345 | 4.278419 | AGGGGAGAAAGAAAACGACAATTG | 59.722 | 41.667 | 3.24 | 3.24 | 0.00 | 2.32 |
345 | 358 | 7.972832 | AAACGACAATTGATAACTGAACCTA | 57.027 | 32.000 | 13.59 | 0.00 | 0.00 | 3.08 |
398 | 411 | 1.815003 | AGCTATGCAAACAAGCTCCAC | 59.185 | 47.619 | 9.62 | 0.00 | 42.89 | 4.02 |
573 | 589 | 4.354943 | CACCCTCCCCCACCTCCT | 62.355 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
591 | 607 | 3.147595 | GCCCGCCTTTTCCCCATC | 61.148 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
622 | 638 | 1.879380 | CTCTCCCGCATTTCACAAACA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
649 | 665 | 7.597288 | TCATTATCTCGTTTCCCTTGATCTA | 57.403 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
773 | 799 | 3.181967 | CAGAGCGACGGCCTTTCG | 61.182 | 66.667 | 17.05 | 17.05 | 41.24 | 3.46 |
983 | 1017 | 2.030562 | CGTTGTCGGAGCAGGGTT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 4.11 |
1039 | 1073 | 1.219393 | GAGGCTTCCAAGGTCTCCG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
1252 | 1289 | 2.058675 | CCCCGATCCAGTATCCCAC | 58.941 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
1293 | 1330 | 7.060633 | GTGAACTTATTAATTTCGTTGTGGCTG | 59.939 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
1459 | 1496 | 5.048713 | AGGTTGTTAAGCATTTGTAGCAGTC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1492 | 1529 | 7.112452 | TGCAGATTAGACTACATTCTAGCAA | 57.888 | 36.000 | 0.00 | 0.00 | 29.67 | 3.91 |
1532 | 1572 | 9.859152 | CAGAAATATAGAGGGGAAATTTCTCTT | 57.141 | 33.333 | 17.45 | 10.38 | 42.21 | 2.85 |
1589 | 1629 | 7.887996 | TTTGAAGGACATATGCATTTGAAAC | 57.112 | 32.000 | 21.91 | 11.70 | 0.00 | 2.78 |
1627 | 1667 | 6.205853 | ACTGTTTAATTTGAACCGCTGATACA | 59.794 | 34.615 | 2.04 | 0.00 | 0.00 | 2.29 |
1630 | 1670 | 7.753132 | TGTTTAATTTGAACCGCTGATACAATC | 59.247 | 33.333 | 2.04 | 0.00 | 0.00 | 2.67 |
1631 | 1671 | 5.895636 | AATTTGAACCGCTGATACAATCA | 57.104 | 34.783 | 0.00 | 0.00 | 37.76 | 2.57 |
1637 | 1677 | 6.054941 | TGAACCGCTGATACAATCATTATGT | 58.945 | 36.000 | 0.00 | 0.00 | 38.85 | 2.29 |
1638 | 1678 | 5.929697 | ACCGCTGATACAATCATTATGTG | 57.070 | 39.130 | 0.00 | 0.00 | 38.85 | 3.21 |
1639 | 1679 | 5.368145 | ACCGCTGATACAATCATTATGTGT | 58.632 | 37.500 | 0.00 | 0.00 | 38.85 | 3.72 |
1640 | 1680 | 6.521162 | ACCGCTGATACAATCATTATGTGTA | 58.479 | 36.000 | 0.00 | 0.00 | 38.85 | 2.90 |
1641 | 1681 | 7.161404 | ACCGCTGATACAATCATTATGTGTAT | 58.839 | 34.615 | 7.80 | 7.80 | 40.34 | 2.29 |
1643 | 1683 | 7.413328 | CCGCTGATACAATCATTATGTGTATGG | 60.413 | 40.741 | 11.53 | 5.11 | 38.31 | 2.74 |
1644 | 1684 | 7.246311 | GCTGATACAATCATTATGTGTATGGC | 58.754 | 38.462 | 11.53 | 11.23 | 38.31 | 4.40 |
1645 | 1685 | 7.363205 | TGATACAATCATTATGTGTATGGCG | 57.637 | 36.000 | 11.53 | 0.00 | 38.31 | 5.69 |
1647 | 1687 | 3.820467 | ACAATCATTATGTGTATGGCGGG | 59.180 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
1669 | 1719 | 4.320202 | GGAATTTGTCGCTTGTGTGTATGT | 60.320 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1812 | 1862 | 5.109903 | GTGTTCTGCATCGGTCTATAACTT | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
1813 | 1863 | 6.270815 | GTGTTCTGCATCGGTCTATAACTTA | 58.729 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1814 | 1864 | 6.198591 | GTGTTCTGCATCGGTCTATAACTTAC | 59.801 | 42.308 | 0.00 | 0.00 | 0.00 | 2.34 |
1815 | 1865 | 6.096423 | TGTTCTGCATCGGTCTATAACTTACT | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
1816 | 1866 | 6.315091 | TCTGCATCGGTCTATAACTTACTC | 57.685 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1817 | 1867 | 5.241064 | TCTGCATCGGTCTATAACTTACTCC | 59.759 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1818 | 1868 | 4.280174 | TGCATCGGTCTATAACTTACTCCC | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1819 | 1869 | 4.523558 | GCATCGGTCTATAACTTACTCCCT | 59.476 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
1820 | 1870 | 5.335819 | GCATCGGTCTATAACTTACTCCCTC | 60.336 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1821 | 1871 | 4.723309 | TCGGTCTATAACTTACTCCCTCC | 58.277 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1822 | 1872 | 3.501445 | CGGTCTATAACTTACTCCCTCCG | 59.499 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
1823 | 1873 | 4.468713 | GGTCTATAACTTACTCCCTCCGT | 58.531 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
1824 | 1874 | 4.892345 | GGTCTATAACTTACTCCCTCCGTT | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
1825 | 1875 | 5.009510 | GGTCTATAACTTACTCCCTCCGTTC | 59.990 | 48.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1826 | 1876 | 5.009510 | GTCTATAACTTACTCCCTCCGTTCC | 59.990 | 48.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1827 | 1877 | 2.019807 | AACTTACTCCCTCCGTTCCA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1828 | 1878 | 2.019807 | ACTTACTCCCTCCGTTCCAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1829 | 1879 | 2.332117 | ACTTACTCCCTCCGTTCCAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
1830 | 1880 | 2.707257 | ACTTACTCCCTCCGTTCCAAAA | 59.293 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
1831 | 1881 | 3.329814 | ACTTACTCCCTCCGTTCCAAAAT | 59.670 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
1832 | 1882 | 4.533311 | ACTTACTCCCTCCGTTCCAAAATA | 59.467 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1833 | 1883 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
1834 | 1884 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
1835 | 1885 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
1836 | 1886 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1837 | 1887 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
1838 | 1888 | 3.877508 | CCCTCCGTTCCAAAATAGATGAC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
1839 | 1889 | 3.877508 | CCTCCGTTCCAAAATAGATGACC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1840 | 1890 | 3.877508 | CTCCGTTCCAAAATAGATGACCC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
1841 | 1891 | 3.264706 | TCCGTTCCAAAATAGATGACCCA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
1842 | 1892 | 4.013728 | CCGTTCCAAAATAGATGACCCAA | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
1843 | 1893 | 4.142469 | CCGTTCCAAAATAGATGACCCAAC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
1844 | 1894 | 4.700213 | CGTTCCAAAATAGATGACCCAACT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1845 | 1895 | 5.183140 | CGTTCCAAAATAGATGACCCAACTT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1846 | 1896 | 6.294508 | CGTTCCAAAATAGATGACCCAACTTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
1847 | 1897 | 6.588719 | TCCAAAATAGATGACCCAACTTTG | 57.411 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
1848 | 1898 | 6.074648 | TCCAAAATAGATGACCCAACTTTGT | 58.925 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1849 | 1899 | 7.235079 | TCCAAAATAGATGACCCAACTTTGTA | 58.765 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1850 | 1900 | 7.175990 | TCCAAAATAGATGACCCAACTTTGTAC | 59.824 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1851 | 1901 | 7.176690 | CCAAAATAGATGACCCAACTTTGTACT | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1852 | 1902 | 9.226606 | CAAAATAGATGACCCAACTTTGTACTA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1853 | 1903 | 9.802039 | AAAATAGATGACCCAACTTTGTACTAA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1854 | 1904 | 9.449719 | AAATAGATGACCCAACTTTGTACTAAG | 57.550 | 33.333 | 14.42 | 14.42 | 0.00 | 2.18 |
1855 | 1905 | 5.805728 | AGATGACCCAACTTTGTACTAAGG | 58.194 | 41.667 | 19.08 | 6.74 | 0.00 | 2.69 |
1856 | 1906 | 5.309806 | AGATGACCCAACTTTGTACTAAGGT | 59.690 | 40.000 | 19.08 | 11.48 | 0.00 | 3.50 |
1857 | 1907 | 5.376756 | TGACCCAACTTTGTACTAAGGTT | 57.623 | 39.130 | 19.08 | 9.89 | 0.00 | 3.50 |
1858 | 1908 | 6.497624 | TGACCCAACTTTGTACTAAGGTTA | 57.502 | 37.500 | 19.08 | 4.72 | 0.00 | 2.85 |
1859 | 1909 | 6.527423 | TGACCCAACTTTGTACTAAGGTTAG | 58.473 | 40.000 | 19.08 | 9.91 | 36.82 | 2.34 |
1860 | 1910 | 6.100134 | TGACCCAACTTTGTACTAAGGTTAGT | 59.900 | 38.462 | 19.08 | 12.61 | 45.39 | 2.24 |
1861 | 1911 | 7.289782 | TGACCCAACTTTGTACTAAGGTTAGTA | 59.710 | 37.037 | 19.08 | 5.64 | 43.36 | 1.82 |
1887 | 1937 | 9.696917 | ACAAAGTTTGATCATCTATTTTGGAAC | 57.303 | 29.630 | 22.23 | 8.03 | 0.00 | 3.62 |
1888 | 1938 | 8.853345 | CAAAGTTTGATCATCTATTTTGGAACG | 58.147 | 33.333 | 10.19 | 0.00 | 0.00 | 3.95 |
1889 | 1939 | 7.088589 | AGTTTGATCATCTATTTTGGAACGG | 57.911 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1890 | 1940 | 6.884295 | AGTTTGATCATCTATTTTGGAACGGA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
1891 | 1941 | 6.925610 | TTGATCATCTATTTTGGAACGGAG | 57.074 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
1892 | 1942 | 5.368145 | TGATCATCTATTTTGGAACGGAGG | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1893 | 1943 | 4.150897 | TCATCTATTTTGGAACGGAGGG | 57.849 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
1894 | 1944 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1895 | 1945 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
1916 | 1966 | 9.457776 | AGGGAGTATATGCATGGATAATATTCT | 57.542 | 33.333 | 11.23 | 5.58 | 0.00 | 2.40 |
1935 | 1985 | 1.933181 | CTGTTTGTCGACTTGCTGTCA | 59.067 | 47.619 | 17.92 | 5.70 | 45.60 | 3.58 |
2033 | 2083 | 7.269477 | AGAAAATTAATCCTGCTCTGTATGC | 57.731 | 36.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2083 | 2133 | 3.317603 | TCTCTGTGATTGCATTCGTCA | 57.682 | 42.857 | 4.27 | 5.43 | 0.00 | 4.35 |
2102 | 2152 | 4.652822 | GTCAAACCCTCCTTTAGTGTCAT | 58.347 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
2106 | 2156 | 4.993705 | ACCCTCCTTTAGTGTCATCAAA | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2136 | 2186 | 3.689161 | GGTGTGTTCACAAGCTGCATATA | 59.311 | 43.478 | 7.22 | 0.00 | 45.45 | 0.86 |
2168 | 2218 | 7.770433 | CAGAACCAGAATCATATCAAGTAACCA | 59.230 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
2342 | 2393 | 7.862372 | CACTTATTGTGTTATGCTTGACAGTTT | 59.138 | 33.333 | 0.00 | 0.00 | 41.53 | 2.66 |
2507 | 2558 | 7.483059 | CGTGGATTTCTTTTATCTTTTGAGAGC | 59.517 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
2724 | 2781 | 5.930837 | TTCCCATGTGTTTGTTTCTTTCT | 57.069 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
2875 | 2932 | 6.265876 | TCCAAAAAGGACTTGGTGGTTAATAC | 59.734 | 38.462 | 11.75 | 0.00 | 43.07 | 1.89 |
2879 | 2936 | 3.265995 | AGGACTTGGTGGTTAATACCCTG | 59.734 | 47.826 | 8.78 | 5.15 | 44.35 | 4.45 |
3019 | 3079 | 2.489722 | GCAGTGGACCTTTCATCCTTTC | 59.510 | 50.000 | 0.00 | 0.00 | 37.13 | 2.62 |
3115 | 3175 | 7.147479 | GCATCCTCCCTAACCATGTATGTATAT | 60.147 | 40.741 | 0.00 | 0.00 | 0.00 | 0.86 |
3144 | 3204 | 2.027561 | TGCACGCCCAGATAAGTTACTT | 60.028 | 45.455 | 2.32 | 2.32 | 0.00 | 2.24 |
3229 | 3289 | 2.897969 | AGGTCCAAACTATCACTGTCGT | 59.102 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
3262 | 3322 | 6.054941 | CCTTGTTTCACCTTAGCCAATTTTT | 58.945 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3288 | 3348 | 3.056536 | TGAGCTCTTTCTCAGCATTACGT | 60.057 | 43.478 | 16.19 | 0.00 | 39.56 | 3.57 |
3300 | 3360 | 2.567615 | AGCATTACGTCCTGGAAGAACT | 59.432 | 45.455 | 16.67 | 3.30 | 34.07 | 3.01 |
3304 | 3364 | 5.585047 | GCATTACGTCCTGGAAGAACTTATT | 59.415 | 40.000 | 16.67 | 0.00 | 34.07 | 1.40 |
3400 | 3460 | 1.531423 | ATGTGCTTGAAGTGCTCCTG | 58.469 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3403 | 3463 | 1.736681 | GTGCTTGAAGTGCTCCTGATC | 59.263 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
3417 | 3477 | 4.943705 | GCTCCTGATCAATTGTAAGTTCCA | 59.056 | 41.667 | 5.13 | 0.00 | 0.00 | 3.53 |
3421 | 3481 | 8.421249 | TCCTGATCAATTGTAAGTTCCATTTT | 57.579 | 30.769 | 5.13 | 0.00 | 0.00 | 1.82 |
3450 | 3511 | 3.622612 | GGCTTGACATTTTGTGCAAGTTT | 59.377 | 39.130 | 15.01 | 0.00 | 40.71 | 2.66 |
3451 | 3512 | 4.094739 | GGCTTGACATTTTGTGCAAGTTTT | 59.905 | 37.500 | 15.01 | 0.00 | 40.71 | 2.43 |
3454 | 3515 | 5.793026 | TGACATTTTGTGCAAGTTTTTCC | 57.207 | 34.783 | 0.00 | 0.00 | 0.00 | 3.13 |
3480 | 3541 | 9.226606 | CAACTTACCATCCAGAACTTTGTATTA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3482 | 3543 | 9.614792 | ACTTACCATCCAGAACTTTGTATTATC | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3498 | 3559 | 3.627395 | TTATCCATTGCAGTTCCTCGT | 57.373 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
3564 | 3625 | 9.055248 | CATATGATTTTCACTCTTGTTTTCGTC | 57.945 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
3626 | 3687 | 2.289819 | ACCCATGCTTGGCTTGAAATTG | 60.290 | 45.455 | 13.15 | 0.00 | 42.15 | 2.32 |
3680 | 3741 | 0.105964 | TTCCATGCCCGAATCGTAGG | 59.894 | 55.000 | 0.82 | 0.00 | 0.00 | 3.18 |
3784 | 3847 | 0.944311 | CTCGCAAGCACTACACCGTT | 60.944 | 55.000 | 0.00 | 0.00 | 37.18 | 4.44 |
3830 | 3893 | 4.571176 | GCTGGTAGCTTACATTTCACCTAC | 59.429 | 45.833 | 0.00 | 0.00 | 38.45 | 3.18 |
3831 | 3894 | 5.627040 | GCTGGTAGCTTACATTTCACCTACT | 60.627 | 44.000 | 0.00 | 0.00 | 38.45 | 2.57 |
3833 | 3896 | 7.670605 | TGGTAGCTTACATTTCACCTACTAT | 57.329 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3835 | 3898 | 7.343574 | TGGTAGCTTACATTTCACCTACTATCA | 59.656 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
3839 | 3902 | 7.287927 | AGCTTACATTTCACCTACTATCAGCTA | 59.712 | 37.037 | 0.00 | 0.00 | 29.71 | 3.32 |
3841 | 3904 | 8.534954 | TTACATTTCACCTACTATCAGCTACT | 57.465 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3856 | 3919 | 4.305769 | CAGCTACTATTTGGCTGCTCTAG | 58.694 | 47.826 | 0.00 | 0.00 | 45.04 | 2.43 |
3910 | 4039 | 5.234329 | CAGGTATGCCGTTAATCTAGTTGTG | 59.766 | 44.000 | 0.00 | 0.00 | 40.50 | 3.33 |
3931 | 4060 | 0.468226 | TCTTCGTGGACACCAAGCTT | 59.532 | 50.000 | 5.14 | 0.00 | 34.18 | 3.74 |
3971 | 4104 | 9.230122 | TCATGACACACAGTATATGATTTGTTT | 57.770 | 29.630 | 0.00 | 0.00 | 32.28 | 2.83 |
4016 | 4149 | 5.828299 | TTGTAACAAGAGTTCTTTGTGGG | 57.172 | 39.130 | 0.00 | 0.00 | 39.15 | 4.61 |
4017 | 4150 | 4.850680 | TGTAACAAGAGTTCTTTGTGGGT | 58.149 | 39.130 | 0.00 | 0.00 | 39.15 | 4.51 |
4043 | 4176 | 2.332654 | GCAGAAATGCCGGACCGTT | 61.333 | 57.895 | 13.94 | 0.00 | 0.00 | 4.44 |
4116 | 4249 | 4.256920 | CCAAAGGATGAGAAAGACGTGAT | 58.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
4239 | 4373 | 3.499918 | GCCCGTTGATCATCCATCTTAAG | 59.500 | 47.826 | 0.00 | 0.00 | 31.92 | 1.85 |
4245 | 4379 | 6.291849 | CGTTGATCATCCATCTTAAGTTCGAC | 60.292 | 42.308 | 1.63 | 0.00 | 31.92 | 4.20 |
4247 | 4381 | 4.402056 | TCATCCATCTTAAGTTCGACCC | 57.598 | 45.455 | 1.63 | 0.00 | 0.00 | 4.46 |
4248 | 4382 | 3.134081 | TCATCCATCTTAAGTTCGACCCC | 59.866 | 47.826 | 1.63 | 0.00 | 0.00 | 4.95 |
4270 | 4427 | 3.993736 | CCCTTAAAAATTGAAACCCGCAG | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
4272 | 4429 | 4.684242 | CCTTAAAAATTGAAACCCGCAGTC | 59.316 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4273 | 4430 | 2.415697 | AAAATTGAAACCCGCAGTCG | 57.584 | 45.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4274 | 4431 | 1.314730 | AAATTGAAACCCGCAGTCGT | 58.685 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4275 | 4432 | 1.314730 | AATTGAAACCCGCAGTCGTT | 58.685 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4276 | 4433 | 1.314730 | ATTGAAACCCGCAGTCGTTT | 58.685 | 45.000 | 0.00 | 0.00 | 34.95 | 3.60 |
4277 | 4434 | 1.950828 | TTGAAACCCGCAGTCGTTTA | 58.049 | 45.000 | 0.00 | 0.00 | 32.46 | 2.01 |
4278 | 4435 | 2.172851 | TGAAACCCGCAGTCGTTTAT | 57.827 | 45.000 | 0.00 | 0.00 | 32.46 | 1.40 |
4279 | 4436 | 2.070783 | TGAAACCCGCAGTCGTTTATC | 58.929 | 47.619 | 0.00 | 0.00 | 32.46 | 1.75 |
4299 | 4459 | 1.605457 | CCGTTGAGCTGAGCTTGTACA | 60.605 | 52.381 | 9.00 | 0.00 | 39.88 | 2.90 |
4328 | 4488 | 3.467226 | GCCGGGCTGCCTGTACTA | 61.467 | 66.667 | 25.08 | 0.00 | 0.00 | 1.82 |
4329 | 4489 | 2.499685 | CCGGGCTGCCTGTACTAC | 59.500 | 66.667 | 25.08 | 2.77 | 0.00 | 2.73 |
4330 | 4490 | 2.355986 | CCGGGCTGCCTGTACTACA | 61.356 | 63.158 | 25.08 | 0.00 | 0.00 | 2.74 |
4331 | 4491 | 1.141881 | CGGGCTGCCTGTACTACAG | 59.858 | 63.158 | 19.55 | 9.02 | 45.53 | 2.74 |
4424 | 4586 | 1.685765 | CACCCCGAGGAGGACATGA | 60.686 | 63.158 | 0.00 | 0.00 | 45.00 | 3.07 |
4425 | 4587 | 1.381872 | ACCCCGAGGAGGACATGAG | 60.382 | 63.158 | 0.00 | 0.00 | 45.00 | 2.90 |
4426 | 4588 | 2.801631 | CCCCGAGGAGGACATGAGC | 61.802 | 68.421 | 0.00 | 0.00 | 45.00 | 4.26 |
4476 | 4641 | 1.134995 | CACATGAGCGCTTCTCCAGTA | 60.135 | 52.381 | 13.26 | 0.00 | 41.18 | 2.74 |
4477 | 4642 | 1.135915 | ACATGAGCGCTTCTCCAGTAG | 59.864 | 52.381 | 13.26 | 1.88 | 41.18 | 2.57 |
4478 | 4643 | 1.135915 | CATGAGCGCTTCTCCAGTAGT | 59.864 | 52.381 | 13.26 | 0.00 | 41.18 | 2.73 |
4479 | 4644 | 0.811915 | TGAGCGCTTCTCCAGTAGTC | 59.188 | 55.000 | 13.26 | 0.00 | 41.18 | 2.59 |
4480 | 4645 | 0.101579 | GAGCGCTTCTCCAGTAGTCC | 59.898 | 60.000 | 13.26 | 0.00 | 35.77 | 3.85 |
4481 | 4646 | 0.612174 | AGCGCTTCTCCAGTAGTCCA | 60.612 | 55.000 | 2.64 | 0.00 | 0.00 | 4.02 |
4561 | 4726 | 4.424711 | TGCCCGGCCCATTCTGTC | 62.425 | 66.667 | 7.03 | 0.00 | 0.00 | 3.51 |
4569 | 4734 | 1.035932 | GCCCATTCTGTCTGCATGCT | 61.036 | 55.000 | 20.33 | 0.00 | 0.00 | 3.79 |
4582 | 4764 | 3.267233 | ATGCTGAAGCCCCACCCA | 61.267 | 61.111 | 0.00 | 0.00 | 41.18 | 4.51 |
4591 | 4773 | 3.077907 | CCCCACCCATCGTTCAGT | 58.922 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
4605 | 4787 | 1.779061 | TTCAGTTGAGCCACCCTCCC | 61.779 | 60.000 | 0.00 | 0.00 | 39.98 | 4.30 |
4607 | 4789 | 1.920835 | AGTTGAGCCACCCTCCCTC | 60.921 | 63.158 | 0.00 | 0.00 | 39.98 | 4.30 |
4636 | 4819 | 1.342474 | TGGCCTTCCCTTCAACAACAA | 60.342 | 47.619 | 3.32 | 0.00 | 0.00 | 2.83 |
4647 | 4830 | 4.391523 | CCTTCAACAACAACACCAAAAAGG | 59.608 | 41.667 | 0.00 | 0.00 | 45.67 | 3.11 |
4648 | 4831 | 4.873746 | TCAACAACAACACCAAAAAGGA | 57.126 | 36.364 | 0.00 | 0.00 | 41.22 | 3.36 |
4649 | 4832 | 5.413309 | TCAACAACAACACCAAAAAGGAT | 57.587 | 34.783 | 0.00 | 0.00 | 41.22 | 3.24 |
4650 | 4833 | 5.799213 | TCAACAACAACACCAAAAAGGATT | 58.201 | 33.333 | 0.00 | 0.00 | 41.22 | 3.01 |
4651 | 4834 | 5.641209 | TCAACAACAACACCAAAAAGGATTG | 59.359 | 36.000 | 0.00 | 0.00 | 41.22 | 2.67 |
4652 | 4835 | 5.413309 | ACAACAACACCAAAAAGGATTGA | 57.587 | 34.783 | 8.95 | 0.00 | 41.22 | 2.57 |
4658 | 4844 | 5.410355 | ACACCAAAAAGGATTGATGATGG | 57.590 | 39.130 | 0.00 | 0.00 | 41.22 | 3.51 |
4676 | 4862 | 3.620427 | TGGATGTGGGTGTACATGTAC | 57.380 | 47.619 | 25.99 | 25.99 | 41.15 | 2.90 |
4693 | 4879 | 1.599071 | GTACATATCGTCCGACCGACA | 59.401 | 52.381 | 0.00 | 0.00 | 42.07 | 4.35 |
4711 | 4930 | 4.985409 | CCGACAGACCAGCTTAATTCTATC | 59.015 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
4716 | 4935 | 7.743749 | ACAGACCAGCTTAATTCTATCATCAT | 58.256 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
4749 | 4968 | 0.243907 | CATATCGATTCTCCGCCGGT | 59.756 | 55.000 | 1.71 | 0.00 | 0.00 | 5.28 |
4811 | 5030 | 6.227522 | TGGACGAGTTTCATTCATTCTGTTA | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4819 | 5038 | 1.011968 | TTCATTCTGTTAGCGCGCGT | 61.012 | 50.000 | 32.35 | 20.00 | 0.00 | 6.01 |
5012 | 5257 | 1.602668 | CCATTGGGTTTTGCGTGTGAG | 60.603 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5021 | 5269 | 1.691195 | TTGCGTGTGAGTTCCCTCCA | 61.691 | 55.000 | 0.00 | 0.00 | 36.86 | 3.86 |
5024 | 5272 | 0.393077 | CGTGTGAGTTCCCTCCACTT | 59.607 | 55.000 | 0.00 | 0.00 | 37.04 | 3.16 |
5068 | 5316 | 1.125093 | TTTCGTGCTGGGGAGAAGGA | 61.125 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5098 | 5346 | 3.188786 | CTACACGCCGCAGCTTCC | 61.189 | 66.667 | 0.00 | 0.00 | 36.60 | 3.46 |
5104 | 5352 | 3.752339 | GCCGCAGCTTCCCCTTTG | 61.752 | 66.667 | 0.00 | 0.00 | 35.50 | 2.77 |
5105 | 5353 | 3.752339 | CCGCAGCTTCCCCTTTGC | 61.752 | 66.667 | 0.00 | 0.00 | 0.00 | 3.68 |
5175 | 5459 | 3.787001 | CCGGCCCTGGAGAGGAAC | 61.787 | 72.222 | 0.00 | 0.00 | 42.93 | 3.62 |
5176 | 5460 | 3.003173 | CGGCCCTGGAGAGGAACA | 61.003 | 66.667 | 0.00 | 0.00 | 42.93 | 3.18 |
5178 | 5462 | 1.767692 | GGCCCTGGAGAGGAACAAA | 59.232 | 57.895 | 0.00 | 0.00 | 42.93 | 2.83 |
5179 | 5463 | 0.609406 | GGCCCTGGAGAGGAACAAAC | 60.609 | 60.000 | 0.00 | 0.00 | 42.93 | 2.93 |
5180 | 5464 | 0.955919 | GCCCTGGAGAGGAACAAACG | 60.956 | 60.000 | 0.00 | 0.00 | 42.93 | 3.60 |
5181 | 5465 | 0.955919 | CCCTGGAGAGGAACAAACGC | 60.956 | 60.000 | 0.00 | 0.00 | 42.93 | 4.84 |
5182 | 5466 | 0.250295 | CCTGGAGAGGAACAAACGCA | 60.250 | 55.000 | 0.00 | 0.00 | 42.93 | 5.24 |
5183 | 5467 | 1.611673 | CCTGGAGAGGAACAAACGCAT | 60.612 | 52.381 | 0.00 | 0.00 | 42.93 | 4.73 |
5184 | 5468 | 1.734465 | CTGGAGAGGAACAAACGCATC | 59.266 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
5257 | 5541 | 2.951457 | TCACCGATTCTCGTATGCAA | 57.049 | 45.000 | 0.00 | 0.00 | 38.40 | 4.08 |
5332 | 5616 | 0.904649 | TGCTACTACCACTGCTGCAT | 59.095 | 50.000 | 1.31 | 0.00 | 0.00 | 3.96 |
5333 | 5617 | 1.134699 | TGCTACTACCACTGCTGCATC | 60.135 | 52.381 | 1.31 | 0.00 | 0.00 | 3.91 |
5370 | 5654 | 1.815421 | CGGTCCTGGGAATTCTGCG | 60.815 | 63.158 | 5.23 | 0.00 | 0.00 | 5.18 |
5379 | 5663 | 1.502163 | GGAATTCTGCGGCCTCATCG | 61.502 | 60.000 | 5.23 | 0.00 | 0.00 | 3.84 |
5397 | 5681 | 0.602106 | CGCACCAGATCCTATGCCTG | 60.602 | 60.000 | 7.00 | 0.00 | 34.49 | 4.85 |
5444 | 5728 | 4.172512 | AGAGCCATCTGCCCTGCG | 62.173 | 66.667 | 0.00 | 0.00 | 42.71 | 5.18 |
5448 | 5732 | 4.478371 | CCATCTGCCCTGCGCTCA | 62.478 | 66.667 | 9.73 | 0.20 | 38.78 | 4.26 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.099921 | CCGACGAGTCTCATGGAATTCT | 59.900 | 50.000 | 5.23 | 0.00 | 0.00 | 2.40 |
3 | 4 | 1.678627 | CTCCGACGAGTCTCATGGAAT | 59.321 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4 | 5 | 1.095600 | CTCCGACGAGTCTCATGGAA | 58.904 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6 | 7 | 0.378962 | GTCTCCGACGAGTCTCATGG | 59.621 | 60.000 | 0.00 | 0.00 | 37.40 | 3.66 |
7 | 8 | 1.087501 | TGTCTCCGACGAGTCTCATG | 58.912 | 55.000 | 0.00 | 0.00 | 37.40 | 3.07 |
8 | 9 | 1.088306 | GTGTCTCCGACGAGTCTCAT | 58.912 | 55.000 | 0.00 | 0.00 | 37.40 | 2.90 |
9 | 10 | 0.250166 | TGTGTCTCCGACGAGTCTCA | 60.250 | 55.000 | 0.00 | 0.00 | 37.40 | 3.27 |
10 | 11 | 0.166379 | GTGTGTCTCCGACGAGTCTC | 59.834 | 60.000 | 0.00 | 0.00 | 37.40 | 3.36 |
11 | 12 | 1.235948 | GGTGTGTCTCCGACGAGTCT | 61.236 | 60.000 | 0.00 | 0.00 | 37.40 | 3.24 |
12 | 13 | 1.209640 | GGTGTGTCTCCGACGAGTC | 59.790 | 63.158 | 0.00 | 0.00 | 37.40 | 3.36 |
13 | 14 | 1.228184 | AGGTGTGTCTCCGACGAGT | 60.228 | 57.895 | 0.00 | 0.00 | 37.40 | 4.18 |
14 | 15 | 1.502640 | GAGGTGTGTCTCCGACGAG | 59.497 | 63.158 | 0.00 | 0.00 | 34.95 | 4.18 |
35 | 36 | 2.265739 | GCATCGTCAGAGGGTGCA | 59.734 | 61.111 | 21.11 | 0.00 | 35.93 | 4.57 |
36 | 37 | 2.887568 | CGCATCGTCAGAGGGTGC | 60.888 | 66.667 | 17.00 | 17.00 | 0.00 | 5.01 |
37 | 38 | 1.226802 | CTCGCATCGTCAGAGGGTG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
38 | 39 | 1.378646 | TCTCGCATCGTCAGAGGGT | 60.379 | 57.895 | 0.00 | 0.00 | 33.16 | 4.34 |
73 | 74 | 1.362224 | AGGTTCTCTTTGCCTAGCCA | 58.638 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
77 | 78 | 8.109634 | AGAATGAAATAAGGTTCTCTTTGCCTA | 58.890 | 33.333 | 0.00 | 0.00 | 36.93 | 3.93 |
101 | 102 | 0.246635 | GCAGCGGTGACTTCCTAAGA | 59.753 | 55.000 | 20.69 | 0.00 | 0.00 | 2.10 |
113 | 114 | 2.985847 | GAAAGGCAAGGCAGCGGT | 60.986 | 61.111 | 0.00 | 0.00 | 34.64 | 5.68 |
129 | 130 | 3.662759 | AGGGTTTGTGTCCTTTTCAGA | 57.337 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
130 | 131 | 5.534654 | TGATTAGGGTTTGTGTCCTTTTCAG | 59.465 | 40.000 | 0.00 | 0.00 | 34.75 | 3.02 |
131 | 132 | 5.450453 | TGATTAGGGTTTGTGTCCTTTTCA | 58.550 | 37.500 | 0.00 | 0.00 | 34.75 | 2.69 |
134 | 135 | 5.070685 | GTCTGATTAGGGTTTGTGTCCTTT | 58.929 | 41.667 | 0.00 | 0.00 | 34.75 | 3.11 |
135 | 136 | 4.351111 | AGTCTGATTAGGGTTTGTGTCCTT | 59.649 | 41.667 | 0.00 | 0.00 | 34.75 | 3.36 |
138 | 139 | 7.739498 | TTTTAGTCTGATTAGGGTTTGTGTC | 57.261 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
175 | 178 | 0.337428 | ATGGGAGGGCTCATGCTTTT | 59.663 | 50.000 | 0.00 | 0.00 | 32.79 | 2.27 |
180 | 183 | 1.228184 | GCTGATGGGAGGGCTCATG | 60.228 | 63.158 | 0.00 | 0.00 | 34.66 | 3.07 |
181 | 184 | 1.066585 | ATGCTGATGGGAGGGCTCAT | 61.067 | 55.000 | 0.00 | 0.00 | 38.13 | 2.90 |
194 | 197 | 2.443394 | GGATCCCGACCCATGCTGA | 61.443 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
196 | 199 | 2.366837 | TGGATCCCGACCCATGCT | 60.367 | 61.111 | 9.90 | 0.00 | 0.00 | 3.79 |
220 | 223 | 3.017442 | CGTCTACTGAGGAGTCATGGAA | 58.983 | 50.000 | 0.00 | 0.00 | 33.21 | 3.53 |
232 | 241 | 0.738762 | CGACCCGTCTCGTCTACTGA | 60.739 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
236 | 245 | 2.821366 | GCCGACCCGTCTCGTCTA | 60.821 | 66.667 | 0.00 | 0.00 | 31.35 | 2.59 |
258 | 267 | 4.803426 | CCTGCCTCTCGTCGGTGC | 62.803 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
263 | 272 | 1.079057 | GGGTTTCCTGCCTCTCGTC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
292 | 302 | 2.511637 | CCCCTAGAAAGATGGAGGCTTT | 59.488 | 50.000 | 0.00 | 0.00 | 38.22 | 3.51 |
314 | 327 | 8.836413 | TCAGTTATCAATTGTCGTTTTCTTTCT | 58.164 | 29.630 | 5.13 | 0.00 | 0.00 | 2.52 |
360 | 373 | 9.008965 | TGCATAGCTTTACAACTCTTTCAAATA | 57.991 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
365 | 378 | 7.138736 | TGTTTGCATAGCTTTACAACTCTTTC | 58.861 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
383 | 396 | 1.761449 | TTCAGTGGAGCTTGTTTGCA | 58.239 | 45.000 | 0.00 | 0.00 | 34.99 | 4.08 |
384 | 397 | 2.099756 | AGTTTCAGTGGAGCTTGTTTGC | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
573 | 589 | 3.955543 | GATGGGGAAAAGGCGGGCA | 62.956 | 63.158 | 3.78 | 0.00 | 0.00 | 5.36 |
591 | 607 | 3.787001 | GGGAGAGCGAGGGGGTTG | 61.787 | 72.222 | 0.00 | 0.00 | 0.00 | 3.77 |
622 | 638 | 5.989477 | TCAAGGGAAACGAGATAATGATGT | 58.011 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
649 | 665 | 0.980423 | GGCAGGGAGTTCAAGAGAGT | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
983 | 1017 | 0.735978 | CATGGCAGTAGACGACGCAA | 60.736 | 55.000 | 0.00 | 0.00 | 31.70 | 4.85 |
1101 | 1135 | 4.982241 | AAGAAAGGATTGTGAGTCCTCA | 57.018 | 40.909 | 0.00 | 0.00 | 45.23 | 3.86 |
1107 | 1141 | 4.039609 | AGCCCAAAAAGAAAGGATTGTGAG | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1117 | 1151 | 1.138661 | CCTGCACAGCCCAAAAAGAAA | 59.861 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
1211 | 1246 | 2.162681 | CTCACCTGAAACACAATCCCC | 58.837 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
1252 | 1289 | 2.041966 | GTTCACACACACGACGTAGAG | 58.958 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
1293 | 1330 | 1.296056 | ATACTGAAACGCGCACCACC | 61.296 | 55.000 | 5.73 | 0.00 | 0.00 | 4.61 |
1395 | 1432 | 3.259123 | CCAATTCCAGGGAAGAAACAAGG | 59.741 | 47.826 | 6.91 | 0.00 | 37.56 | 3.61 |
1459 | 1496 | 6.166279 | TGTAGTCTAATCTGCAACAGGAAAG | 58.834 | 40.000 | 0.00 | 0.00 | 31.51 | 2.62 |
1492 | 1529 | 5.779529 | ATATTTCTGCCGATCAGCAAAAT | 57.220 | 34.783 | 19.01 | 19.01 | 43.52 | 1.82 |
1512 | 1552 | 9.460413 | TTCCATAAGAGAAATTTCCCCTCTATA | 57.540 | 33.333 | 14.61 | 7.21 | 36.36 | 1.31 |
1532 | 1572 | 3.068873 | GTGGGTGCAAAACAGTTTCCATA | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
1610 | 1650 | 6.455360 | AATGATTGTATCAGCGGTTCAAAT | 57.545 | 33.333 | 0.00 | 0.00 | 43.53 | 2.32 |
1627 | 1667 | 4.365514 | TCCCGCCATACACATAATGATT | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1630 | 1670 | 5.221224 | ACAAATTCCCGCCATACACATAATG | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1631 | 1671 | 4.892934 | ACAAATTCCCGCCATACACATAAT | 59.107 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
1637 | 1677 | 1.374560 | CGACAAATTCCCGCCATACA | 58.625 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1638 | 1678 | 0.028902 | GCGACAAATTCCCGCCATAC | 59.971 | 55.000 | 7.55 | 0.00 | 42.77 | 2.39 |
1639 | 1679 | 2.399856 | GCGACAAATTCCCGCCATA | 58.600 | 52.632 | 7.55 | 0.00 | 42.77 | 2.74 |
1640 | 1680 | 3.196648 | GCGACAAATTCCCGCCAT | 58.803 | 55.556 | 7.55 | 0.00 | 42.77 | 4.40 |
1644 | 1684 | 0.591170 | ACACAAGCGACAAATTCCCG | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1645 | 1685 | 1.336755 | ACACACAAGCGACAAATTCCC | 59.663 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
1647 | 1687 | 4.783242 | ACATACACACAAGCGACAAATTC | 58.217 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
1669 | 1719 | 3.994204 | TCGACGATCAATTATTCCCGA | 57.006 | 42.857 | 0.00 | 0.00 | 0.00 | 5.14 |
1812 | 1862 | 4.355549 | TCTATTTTGGAACGGAGGGAGTA | 58.644 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
1813 | 1863 | 3.178865 | TCTATTTTGGAACGGAGGGAGT | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1814 | 1864 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
1815 | 1865 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1816 | 1866 | 3.877508 | GTCATCTATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1817 | 1867 | 3.877508 | GGTCATCTATTTTGGAACGGAGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1818 | 1868 | 3.877508 | GGGTCATCTATTTTGGAACGGAG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
1819 | 1869 | 3.264706 | TGGGTCATCTATTTTGGAACGGA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
1820 | 1870 | 3.616219 | TGGGTCATCTATTTTGGAACGG | 58.384 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
1821 | 1871 | 4.700213 | AGTTGGGTCATCTATTTTGGAACG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1822 | 1872 | 6.590234 | AAGTTGGGTCATCTATTTTGGAAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
1823 | 1873 | 6.553100 | ACAAAGTTGGGTCATCTATTTTGGAA | 59.447 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1824 | 1874 | 6.074648 | ACAAAGTTGGGTCATCTATTTTGGA | 58.925 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1825 | 1875 | 6.345096 | ACAAAGTTGGGTCATCTATTTTGG | 57.655 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
1826 | 1876 | 8.110860 | AGTACAAAGTTGGGTCATCTATTTTG | 57.889 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
1827 | 1877 | 9.802039 | TTAGTACAAAGTTGGGTCATCTATTTT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
1828 | 1878 | 9.449719 | CTTAGTACAAAGTTGGGTCATCTATTT | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1829 | 1879 | 8.047310 | CCTTAGTACAAAGTTGGGTCATCTATT | 58.953 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1830 | 1880 | 7.182206 | ACCTTAGTACAAAGTTGGGTCATCTAT | 59.818 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
1831 | 1881 | 6.499350 | ACCTTAGTACAAAGTTGGGTCATCTA | 59.501 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1832 | 1882 | 5.309806 | ACCTTAGTACAAAGTTGGGTCATCT | 59.690 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1833 | 1883 | 5.557866 | ACCTTAGTACAAAGTTGGGTCATC | 58.442 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
1834 | 1884 | 5.578157 | ACCTTAGTACAAAGTTGGGTCAT | 57.422 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
1835 | 1885 | 5.376756 | AACCTTAGTACAAAGTTGGGTCA | 57.623 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1836 | 1886 | 6.528321 | ACTAACCTTAGTACAAAGTTGGGTC | 58.472 | 40.000 | 0.00 | 0.00 | 41.92 | 4.46 |
1837 | 1887 | 6.505048 | ACTAACCTTAGTACAAAGTTGGGT | 57.495 | 37.500 | 0.00 | 0.00 | 41.92 | 4.51 |
1861 | 1911 | 9.696917 | GTTCCAAAATAGATGATCAAACTTTGT | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
1862 | 1912 | 8.853345 | CGTTCCAAAATAGATGATCAAACTTTG | 58.147 | 33.333 | 0.00 | 5.91 | 0.00 | 2.77 |
1863 | 1913 | 8.028938 | CCGTTCCAAAATAGATGATCAAACTTT | 58.971 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1864 | 1914 | 7.393234 | TCCGTTCCAAAATAGATGATCAAACTT | 59.607 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1865 | 1915 | 6.884295 | TCCGTTCCAAAATAGATGATCAAACT | 59.116 | 34.615 | 0.00 | 5.25 | 0.00 | 2.66 |
1866 | 1916 | 7.083875 | TCCGTTCCAAAATAGATGATCAAAC | 57.916 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1867 | 1917 | 6.318648 | CCTCCGTTCCAAAATAGATGATCAAA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
1868 | 1918 | 5.822519 | CCTCCGTTCCAAAATAGATGATCAA | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1869 | 1919 | 5.368145 | CCTCCGTTCCAAAATAGATGATCA | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
1870 | 1920 | 4.757149 | CCCTCCGTTCCAAAATAGATGATC | 59.243 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
1871 | 1921 | 4.412199 | TCCCTCCGTTCCAAAATAGATGAT | 59.588 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
1872 | 1922 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
1873 | 1923 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1874 | 1924 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
1875 | 1925 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
1876 | 1926 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
1877 | 1927 | 6.743208 | GCATATACTCCCTCCGTTCCAAAATA | 60.743 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
1878 | 1928 | 5.621193 | CATATACTCCCTCCGTTCCAAAAT | 58.379 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1879 | 1929 | 4.685030 | GCATATACTCCCTCCGTTCCAAAA | 60.685 | 45.833 | 0.00 | 0.00 | 0.00 | 2.44 |
1880 | 1930 | 3.181458 | GCATATACTCCCTCCGTTCCAAA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
1881 | 1931 | 2.367567 | GCATATACTCCCTCCGTTCCAA | 59.632 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1882 | 1932 | 1.968493 | GCATATACTCCCTCCGTTCCA | 59.032 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1883 | 1933 | 1.968493 | TGCATATACTCCCTCCGTTCC | 59.032 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
1884 | 1934 | 3.589988 | CATGCATATACTCCCTCCGTTC | 58.410 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1885 | 1935 | 2.303022 | CCATGCATATACTCCCTCCGTT | 59.697 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1886 | 1936 | 1.902508 | CCATGCATATACTCCCTCCGT | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
1887 | 1937 | 2.179427 | TCCATGCATATACTCCCTCCG | 58.821 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
1888 | 1938 | 5.957771 | TTATCCATGCATATACTCCCTCC | 57.042 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1889 | 1939 | 9.717942 | GAATATTATCCATGCATATACTCCCTC | 57.282 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1890 | 1940 | 9.457776 | AGAATATTATCCATGCATATACTCCCT | 57.542 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
1891 | 1941 | 9.499479 | CAGAATATTATCCATGCATATACTCCC | 57.501 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1992 | 2042 | 6.892658 | ATTTTCTATGCACAACTTGGTACA | 57.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
1996 | 2046 | 8.253113 | AGGATTAATTTTCTATGCACAACTTGG | 58.747 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
1997 | 2047 | 9.079833 | CAGGATTAATTTTCTATGCACAACTTG | 57.920 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1998 | 2048 | 7.761249 | GCAGGATTAATTTTCTATGCACAACTT | 59.239 | 33.333 | 0.00 | 0.00 | 32.79 | 2.66 |
1999 | 2049 | 7.123247 | AGCAGGATTAATTTTCTATGCACAACT | 59.877 | 33.333 | 14.80 | 0.00 | 34.93 | 3.16 |
2000 | 2050 | 7.260603 | AGCAGGATTAATTTTCTATGCACAAC | 58.739 | 34.615 | 14.80 | 0.00 | 34.93 | 3.32 |
2033 | 2083 | 2.086869 | AGCCCGATGAAACATTCACAG | 58.913 | 47.619 | 0.00 | 0.00 | 43.48 | 3.66 |
2083 | 2133 | 4.993705 | TGATGACACTAAAGGAGGGTTT | 57.006 | 40.909 | 0.00 | 0.00 | 44.07 | 3.27 |
2102 | 2152 | 3.066621 | GTGAACACACCAGCAGAATTTGA | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2106 | 2156 | 2.346766 | TGTGAACACACCAGCAGAAT | 57.653 | 45.000 | 3.39 | 0.00 | 36.21 | 2.40 |
2136 | 2186 | 3.947612 | ATGATTCTGGTTCTGGCAGAT | 57.052 | 42.857 | 19.50 | 0.24 | 0.00 | 2.90 |
2168 | 2218 | 1.023513 | GTCCGAGCATGCTCAAAGCT | 61.024 | 55.000 | 38.97 | 10.84 | 42.97 | 3.74 |
2661 | 2714 | 6.534634 | AGGCAGAAGTAGTCAAAACAAGTAT | 58.465 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2875 | 2932 | 1.682854 | ACAAATGACACACAAGCAGGG | 59.317 | 47.619 | 0.00 | 0.00 | 0.00 | 4.45 |
2879 | 2936 | 5.424121 | AGAACTACAAATGACACACAAGC | 57.576 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
3115 | 3175 | 5.825679 | ACTTATCTGGGCGTGCAAAATATTA | 59.174 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
3127 | 3187 | 7.387948 | AGCAATATTAAGTAACTTATCTGGGCG | 59.612 | 37.037 | 0.00 | 0.00 | 0.00 | 6.13 |
3144 | 3204 | 5.126067 | GTGAAGCCTGGAGAAGCAATATTA | 58.874 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
3262 | 3322 | 1.002773 | TGCTGAGAAAGAGCTCATGCA | 59.997 | 47.619 | 17.77 | 6.65 | 43.43 | 3.96 |
3288 | 3348 | 7.741785 | TGACTAAACAATAAGTTCTTCCAGGA | 58.258 | 34.615 | 0.00 | 0.00 | 40.26 | 3.86 |
3304 | 3364 | 7.423844 | AGATGACTCCATGTATGACTAAACA | 57.576 | 36.000 | 0.00 | 0.00 | 32.09 | 2.83 |
3417 | 3477 | 8.723311 | CACAAAATGTCAAGCCAATGATAAAAT | 58.277 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3421 | 3481 | 5.170021 | GCACAAAATGTCAAGCCAATGATA | 58.830 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
3450 | 3511 | 5.319043 | AGTTCTGGATGGTAAGTTGGAAA | 57.681 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
3451 | 3512 | 4.993705 | AGTTCTGGATGGTAAGTTGGAA | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
3454 | 3515 | 7.687941 | ATACAAAGTTCTGGATGGTAAGTTG | 57.312 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3480 | 3541 | 1.679944 | CCACGAGGAACTGCAATGGAT | 60.680 | 52.381 | 0.00 | 0.00 | 41.55 | 3.41 |
3482 | 3543 | 0.321564 | TCCACGAGGAACTGCAATGG | 60.322 | 55.000 | 0.00 | 0.00 | 42.23 | 3.16 |
3498 | 3559 | 2.714250 | ACCACACCCAAGATTTACTCCA | 59.286 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3564 | 3625 | 5.469760 | TGAGCCATATTTGTGATATGTTCGG | 59.530 | 40.000 | 5.57 | 0.00 | 31.77 | 4.30 |
3626 | 3687 | 5.008980 | GGATTTCCCAGATGGAGATTCATC | 58.991 | 45.833 | 0.00 | 0.00 | 46.24 | 2.92 |
3657 | 3718 | 1.156736 | CGATTCGGGCATGGAATACC | 58.843 | 55.000 | 0.00 | 0.00 | 34.41 | 2.73 |
3658 | 3719 | 1.878953 | ACGATTCGGGCATGGAATAC | 58.121 | 50.000 | 11.29 | 0.00 | 34.41 | 1.89 |
3659 | 3720 | 2.028476 | CCTACGATTCGGGCATGGAATA | 60.028 | 50.000 | 11.29 | 0.00 | 34.41 | 1.75 |
3660 | 3721 | 1.270839 | CCTACGATTCGGGCATGGAAT | 60.271 | 52.381 | 11.29 | 0.00 | 36.85 | 3.01 |
3661 | 3722 | 0.105964 | CCTACGATTCGGGCATGGAA | 59.894 | 55.000 | 11.29 | 0.00 | 0.00 | 3.53 |
3662 | 3723 | 1.046472 | ACCTACGATTCGGGCATGGA | 61.046 | 55.000 | 11.29 | 0.00 | 0.00 | 3.41 |
3680 | 3741 | 2.922740 | TACAAGGTCCACCAGTTCAC | 57.077 | 50.000 | 0.00 | 0.00 | 38.89 | 3.18 |
3784 | 3847 | 1.774110 | ACCAGGCAACAACAACATCA | 58.226 | 45.000 | 0.00 | 0.00 | 41.41 | 3.07 |
3808 | 3871 | 5.978814 | AGTAGGTGAAATGTAAGCTACCAG | 58.021 | 41.667 | 6.05 | 0.00 | 44.63 | 4.00 |
3835 | 3898 | 3.964031 | ACTAGAGCAGCCAAATAGTAGCT | 59.036 | 43.478 | 0.00 | 0.00 | 37.32 | 3.32 |
3839 | 3902 | 4.100189 | CAGGTACTAGAGCAGCCAAATAGT | 59.900 | 45.833 | 0.00 | 0.00 | 36.02 | 2.12 |
3841 | 3904 | 4.030913 | ACAGGTACTAGAGCAGCCAAATA | 58.969 | 43.478 | 0.00 | 0.00 | 36.02 | 1.40 |
3850 | 3913 | 6.126568 | CTGTTAGAAGACAGGTACTAGAGC | 57.873 | 45.833 | 0.00 | 0.00 | 42.58 | 4.09 |
3853 | 3916 | 6.071840 | AGCAACTGTTAGAAGACAGGTACTAG | 60.072 | 42.308 | 9.53 | 0.00 | 45.45 | 2.57 |
3856 | 3919 | 4.884247 | AGCAACTGTTAGAAGACAGGTAC | 58.116 | 43.478 | 9.53 | 0.00 | 45.45 | 3.34 |
3910 | 4039 | 0.586802 | GCTTGGTGTCCACGAAGAAC | 59.413 | 55.000 | 21.55 | 5.52 | 45.97 | 3.01 |
3931 | 4060 | 4.141597 | TGTGTCATGAAAACAGTACCTGGA | 60.142 | 41.667 | 0.00 | 0.00 | 35.51 | 3.86 |
3971 | 4104 | 8.203485 | ACAAAGTGCCTTCAAATAGAAAATCAA | 58.797 | 29.630 | 0.00 | 0.00 | 35.40 | 2.57 |
3986 | 4119 | 5.193679 | AGAACTCTTGTTACAAAGTGCCTT | 58.806 | 37.500 | 11.48 | 0.47 | 36.39 | 4.35 |
4007 | 4140 | 3.072330 | TCTGCACAAGATACCCACAAAGA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
4165 | 4298 | 1.405872 | AATGCCGTACCCGATCAGTA | 58.594 | 50.000 | 0.00 | 0.00 | 35.63 | 2.74 |
4195 | 4328 | 2.737252 | CGAAAACCCTAGAGTGTTCAGC | 59.263 | 50.000 | 7.94 | 0.00 | 34.19 | 4.26 |
4247 | 4381 | 3.244249 | TGCGGGTTTCAATTTTTAAGGGG | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
4248 | 4382 | 3.993736 | CTGCGGGTTTCAATTTTTAAGGG | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
4257 | 4414 | 1.314730 | AAACGACTGCGGGTTTCAAT | 58.685 | 45.000 | 0.00 | 0.00 | 43.17 | 2.57 |
4260 | 4417 | 1.395954 | GGATAAACGACTGCGGGTTTC | 59.604 | 52.381 | 3.52 | 0.00 | 43.17 | 2.78 |
4265 | 4422 | 0.368907 | CAACGGATAAACGACTGCGG | 59.631 | 55.000 | 0.00 | 0.00 | 43.17 | 5.69 |
4270 | 4427 | 2.599082 | CTCAGCTCAACGGATAAACGAC | 59.401 | 50.000 | 0.00 | 0.00 | 37.61 | 4.34 |
4272 | 4429 | 1.324736 | GCTCAGCTCAACGGATAAACG | 59.675 | 52.381 | 0.00 | 0.00 | 40.31 | 3.60 |
4273 | 4430 | 2.622436 | AGCTCAGCTCAACGGATAAAC | 58.378 | 47.619 | 0.00 | 0.00 | 30.62 | 2.01 |
4274 | 4431 | 3.002791 | CAAGCTCAGCTCAACGGATAAA | 58.997 | 45.455 | 0.00 | 0.00 | 38.25 | 1.40 |
4275 | 4432 | 2.028112 | ACAAGCTCAGCTCAACGGATAA | 60.028 | 45.455 | 0.00 | 0.00 | 38.25 | 1.75 |
4276 | 4433 | 1.550524 | ACAAGCTCAGCTCAACGGATA | 59.449 | 47.619 | 0.00 | 0.00 | 38.25 | 2.59 |
4277 | 4434 | 0.322975 | ACAAGCTCAGCTCAACGGAT | 59.677 | 50.000 | 0.00 | 0.00 | 38.25 | 4.18 |
4278 | 4435 | 0.966179 | TACAAGCTCAGCTCAACGGA | 59.034 | 50.000 | 0.00 | 0.00 | 38.25 | 4.69 |
4279 | 4436 | 1.071605 | GTACAAGCTCAGCTCAACGG | 58.928 | 55.000 | 0.00 | 0.00 | 38.25 | 4.44 |
4330 | 4490 | 1.134431 | CCAAAAGGTGGCAGCAAAACT | 60.134 | 47.619 | 20.04 | 0.00 | 41.72 | 2.66 |
4331 | 4491 | 1.298602 | CCAAAAGGTGGCAGCAAAAC | 58.701 | 50.000 | 20.04 | 0.00 | 41.72 | 2.43 |
4476 | 4641 | 1.350310 | AAAACTCCCGGTGGTGGACT | 61.350 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4477 | 4642 | 1.149854 | AAAACTCCCGGTGGTGGAC | 59.850 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
4478 | 4643 | 1.149627 | CAAAACTCCCGGTGGTGGA | 59.850 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
4479 | 4644 | 1.152839 | ACAAAACTCCCGGTGGTGG | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
4480 | 4645 | 1.170290 | GGACAAAACTCCCGGTGGTG | 61.170 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4481 | 4646 | 1.149854 | GGACAAAACTCCCGGTGGT | 59.850 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
4539 | 4704 | 2.679996 | AATGGGCCGGGCAGTTTC | 60.680 | 61.111 | 30.95 | 12.51 | 0.00 | 2.78 |
4554 | 4719 | 1.743958 | GCTTCAGCATGCAGACAGAAT | 59.256 | 47.619 | 21.98 | 0.00 | 41.59 | 2.40 |
4561 | 4726 | 2.361992 | TGGGGCTTCAGCATGCAG | 60.362 | 61.111 | 21.98 | 12.90 | 44.36 | 4.41 |
4569 | 4734 | 2.478335 | GAACGATGGGTGGGGCTTCA | 62.478 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4582 | 4764 | 0.321653 | GGGTGGCTCAACTGAACGAT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
4591 | 4773 | 2.610859 | GGAGGGAGGGTGGCTCAA | 60.611 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
4636 | 4819 | 5.085920 | TCCATCATCAATCCTTTTTGGTGT | 58.914 | 37.500 | 0.00 | 0.00 | 38.57 | 4.16 |
4647 | 4830 | 3.559069 | ACACCCACATCCATCATCAATC | 58.441 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
4648 | 4831 | 3.675348 | ACACCCACATCCATCATCAAT | 57.325 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
4649 | 4832 | 3.265479 | TGTACACCCACATCCATCATCAA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4650 | 4833 | 2.843113 | TGTACACCCACATCCATCATCA | 59.157 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
4651 | 4834 | 3.558931 | TGTACACCCACATCCATCATC | 57.441 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
4652 | 4835 | 3.202818 | ACATGTACACCCACATCCATCAT | 59.797 | 43.478 | 0.00 | 0.00 | 37.02 | 2.45 |
4693 | 4879 | 8.204903 | AGATGATGATAGAATTAAGCTGGTCT | 57.795 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
4716 | 4935 | 9.310716 | GAGAATCGATATGAATGCATCAATAGA | 57.689 | 33.333 | 0.00 | 0.00 | 42.54 | 1.98 |
4791 | 5010 | 5.251081 | CGCTAACAGAATGAATGAAACTCG | 58.749 | 41.667 | 0.00 | 0.00 | 39.69 | 4.18 |
4991 | 5236 | 1.068921 | ACACGCAAAACCCAATGGC | 59.931 | 52.632 | 0.00 | 0.00 | 33.59 | 4.40 |
4999 | 5244 | 1.021968 | AGGGAACTCACACGCAAAAC | 58.978 | 50.000 | 0.00 | 0.00 | 32.90 | 2.43 |
5000 | 5245 | 3.487576 | AGGGAACTCACACGCAAAA | 57.512 | 47.368 | 0.00 | 0.00 | 32.90 | 2.44 |
5012 | 5257 | 0.961753 | CAAGGCAAAGTGGAGGGAAC | 59.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5087 | 5335 | 3.752339 | CAAAGGGGAAGCTGCGGC | 61.752 | 66.667 | 10.33 | 10.33 | 39.06 | 6.53 |
5089 | 5337 | 3.752339 | GGCAAAGGGGAAGCTGCG | 61.752 | 66.667 | 0.00 | 0.00 | 35.60 | 5.18 |
5092 | 5340 | 1.228988 | CCAAGGCAAAGGGGAAGCT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.74 |
5098 | 5346 | 4.764143 | CCCTACCAAGGCAAAGGG | 57.236 | 61.111 | 7.23 | 7.23 | 42.14 | 3.95 |
5100 | 5348 | 2.030274 | CGAAAACCCTACCAAGGCAAAG | 60.030 | 50.000 | 0.00 | 0.00 | 42.14 | 2.77 |
5101 | 5349 | 1.957877 | CGAAAACCCTACCAAGGCAAA | 59.042 | 47.619 | 0.00 | 0.00 | 42.14 | 3.68 |
5102 | 5350 | 1.611519 | CGAAAACCCTACCAAGGCAA | 58.388 | 50.000 | 0.00 | 0.00 | 42.14 | 4.52 |
5104 | 5352 | 0.608308 | AGCGAAAACCCTACCAAGGC | 60.608 | 55.000 | 0.00 | 0.00 | 42.14 | 4.35 |
5105 | 5353 | 1.810755 | GAAGCGAAAACCCTACCAAGG | 59.189 | 52.381 | 0.00 | 0.00 | 43.25 | 3.61 |
5164 | 5448 | 1.734465 | GATGCGTTTGTTCCTCTCCAG | 59.266 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
5180 | 5464 | 2.087385 | GAGGTACCCTTGCATGGATGC | 61.087 | 57.143 | 19.85 | 6.35 | 43.87 | 3.91 |
5181 | 5465 | 1.492176 | AGAGGTACCCTTGCATGGATG | 59.508 | 52.381 | 19.85 | 6.76 | 31.76 | 3.51 |
5182 | 5466 | 1.771255 | GAGAGGTACCCTTGCATGGAT | 59.229 | 52.381 | 19.85 | 5.33 | 31.76 | 3.41 |
5183 | 5467 | 1.204146 | GAGAGGTACCCTTGCATGGA | 58.796 | 55.000 | 19.85 | 0.00 | 31.76 | 3.41 |
5184 | 5468 | 0.911769 | TGAGAGGTACCCTTGCATGG | 59.088 | 55.000 | 8.74 | 11.68 | 31.76 | 3.66 |
5252 | 5536 | 2.522185 | CTGGGCCAGCTATAATTGCAT | 58.478 | 47.619 | 22.68 | 0.00 | 0.00 | 3.96 |
5332 | 5616 | 2.288013 | GCAATGAATCGCGACGAGA | 58.712 | 52.632 | 12.93 | 3.14 | 39.91 | 4.04 |
5333 | 5617 | 4.860150 | GCAATGAATCGCGACGAG | 57.140 | 55.556 | 12.93 | 0.00 | 39.91 | 4.18 |
5370 | 5654 | 1.596477 | GATCTGGTGCGATGAGGCC | 60.596 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
5379 | 5663 | 0.250640 | CCAGGCATAGGATCTGGTGC | 60.251 | 60.000 | 8.47 | 7.81 | 42.17 | 5.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.