Multiple sequence alignment - TraesCS1B01G288800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G288800 chr1B 100.000 5673 0 0 1 5673 503511194 503516866 0.000000e+00 10477
1 TraesCS1B01G288800 chr1D 94.635 3411 109 27 2314 5671 376780499 376783888 0.000000e+00 5217
2 TraesCS1B01G288800 chr1D 90.163 1352 39 28 549 1861 376778714 376780010 0.000000e+00 1674
3 TraesCS1B01G288800 chr1D 93.939 528 27 4 1 525 376778194 376778719 0.000000e+00 793
4 TraesCS1B01G288800 chr1D 89.607 356 14 5 1876 2211 376780114 376780466 1.130000e-116 431
5 TraesCS1B01G288800 chr1A 91.793 3363 157 56 2395 5671 477016656 477019985 0.000000e+00 4571
6 TraesCS1B01G288800 chr1A 88.502 1922 101 40 5 1861 477014139 477016005 0.000000e+00 2215
7 TraesCS1B01G288800 chr1A 95.500 200 9 0 1869 2068 477016114 477016313 2.550000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G288800 chr1B 503511194 503516866 5672 False 10477.000000 10477 100.000000 1 5673 1 chr1B.!!$F1 5672
1 TraesCS1B01G288800 chr1D 376778194 376783888 5694 False 2028.750000 5217 92.086000 1 5671 4 chr1D.!!$F1 5670
2 TraesCS1B01G288800 chr1A 477014139 477019985 5846 False 2368.666667 4571 91.931667 5 5671 3 chr1A.!!$F1 5666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 801 0.875728 GACGAGACCCATCGATCGAT 59.124 55.0 24.60 24.60 45.56 3.59 F
880 903 0.890996 CAAGAAGGAGGCCACCACAC 60.891 60.0 22.29 11.54 0.00 3.82 F
2060 2268 0.730834 CGTGAGCCACTTGAGTCGAG 60.731 60.0 5.79 5.79 31.34 4.04 F
2259 2506 0.170339 TACTCACGCAGTCACGATGG 59.830 55.0 0.00 0.00 41.61 3.51 F
2417 2720 0.245539 CTGAAGCAATGCCAGGGTTG 59.754 55.0 0.00 0.00 0.00 3.77 F
3040 3372 0.666274 CCGGCTAATATTCTCGCGCA 60.666 55.0 8.75 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1716 0.033601 TGGCGGCAATGGAGGTTAAT 60.034 50.000 10.22 0.0 0.00 1.40 R
2240 2487 0.170339 CCATCGTGACTGCGTGAGTA 59.830 55.000 0.00 0.0 33.83 2.59 R
3147 3479 0.040067 GCTGAAAGGCACCGACAAAG 60.040 55.000 0.00 0.0 0.00 2.77 R
4136 4493 0.169451 GTGCCCCGTAAATTTCACCG 59.831 55.000 0.00 0.0 0.00 4.94 R
4307 4664 2.132762 GCCATATTTCCGTCGTAGGTG 58.867 52.381 0.00 0.0 0.00 4.00 R
4732 5090 0.321210 CCATCCGTGTTACACCTGCA 60.321 55.000 10.10 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.472695 TTTCCGTGTCATTCCTCCAG 57.527 50.000 0.00 0.00 0.00 3.86
29 30 0.907486 TGTCATTCCTCCAGCCAGAG 59.093 55.000 0.00 0.00 0.00 3.35
133 134 2.605818 CCAATTGATTGCCGCATCAAAG 59.394 45.455 7.12 13.45 39.81 2.77
145 146 3.536158 GCATCAAAGCGAAACACAGTA 57.464 42.857 0.00 0.00 0.00 2.74
146 147 3.884169 GCATCAAAGCGAAACACAGTAA 58.116 40.909 0.00 0.00 0.00 2.24
147 148 3.908382 GCATCAAAGCGAAACACAGTAAG 59.092 43.478 0.00 0.00 0.00 2.34
154 155 5.344207 AGCGAAACACAGTAAGAAATGTC 57.656 39.130 0.00 0.00 0.00 3.06
284 290 1.822506 TGGGTTGACACGTCACAAAA 58.177 45.000 0.00 0.00 39.66 2.44
304 310 2.280524 TTGCCCGAACGTCCTGTG 60.281 61.111 0.00 0.00 0.00 3.66
312 318 2.391724 GAACGTCCTGTGCCTCCCAA 62.392 60.000 0.00 0.00 0.00 4.12
313 319 1.779061 AACGTCCTGTGCCTCCCAAT 61.779 55.000 0.00 0.00 0.00 3.16
316 322 1.134098 CGTCCTGTGCCTCCCAATTAT 60.134 52.381 0.00 0.00 0.00 1.28
495 503 1.202533 AGAACCGTTCATCCGCTATGG 60.203 52.381 13.69 0.00 36.15 2.74
527 536 2.986306 GATCGGACGACACCACGGT 61.986 63.158 0.00 0.00 37.61 4.83
528 537 2.482296 GATCGGACGACACCACGGTT 62.482 60.000 0.00 0.00 37.61 4.44
529 538 2.482296 ATCGGACGACACCACGGTTC 62.482 60.000 0.00 0.00 37.61 3.62
530 539 2.732094 GGACGACACCACGGTTCG 60.732 66.667 14.89 14.89 37.61 3.95
531 540 2.732094 GACGACACCACGGTTCGG 60.732 66.667 18.41 0.00 35.03 4.30
532 541 4.955774 ACGACACCACGGTTCGGC 62.956 66.667 18.41 0.00 35.03 5.54
534 543 4.612412 GACACCACGGTTCGGCCA 62.612 66.667 2.24 0.00 36.97 5.36
535 544 4.922026 ACACCACGGTTCGGCCAC 62.922 66.667 2.24 0.00 36.97 5.01
547 556 4.509737 GGCCACGACGGAGCCTAC 62.510 72.222 19.69 0.00 43.62 3.18
599 608 4.148825 ATCGGAGCTGGGTGCGAC 62.149 66.667 17.26 0.00 43.46 5.19
678 687 2.621998 CGTATCGGTCTACACCTTCCAT 59.378 50.000 0.00 0.00 41.17 3.41
683 692 3.446161 TCGGTCTACACCTTCCATACTTG 59.554 47.826 0.00 0.00 41.17 3.16
778 801 0.875728 GACGAGACCCATCGATCGAT 59.124 55.000 24.60 24.60 45.56 3.59
809 832 1.865622 CGACGAGTCTTCTCAGCGC 60.866 63.158 0.00 0.00 40.44 5.92
811 834 2.578178 CGAGTCTTCTCAGCGCGG 60.578 66.667 8.83 0.00 40.44 6.46
812 835 2.202676 GAGTCTTCTCAGCGCGGG 60.203 66.667 8.83 1.03 40.18 6.13
813 836 4.443266 AGTCTTCTCAGCGCGGGC 62.443 66.667 17.92 17.92 40.37 6.13
814 837 4.742201 GTCTTCTCAGCGCGGGCA 62.742 66.667 27.20 5.71 43.41 5.36
815 838 4.742201 TCTTCTCAGCGCGGGCAC 62.742 66.667 27.20 0.00 43.41 5.01
877 900 1.719063 AAGCAAGAAGGAGGCCACCA 61.719 55.000 22.29 0.00 0.00 4.17
878 901 1.973812 GCAAGAAGGAGGCCACCAC 60.974 63.158 22.29 14.36 0.00 4.16
879 902 1.455849 CAAGAAGGAGGCCACCACA 59.544 57.895 22.29 0.00 0.00 4.17
880 903 0.890996 CAAGAAGGAGGCCACCACAC 60.891 60.000 22.29 11.54 0.00 3.82
881 904 2.034221 GAAGGAGGCCACCACACC 59.966 66.667 22.29 6.50 0.00 4.16
1080 1112 2.982744 CTGCTGCTCCTCGTCGTCA 61.983 63.158 0.00 0.00 0.00 4.35
1086 1121 1.377366 GCTCCTCGTCGTCATCCTCA 61.377 60.000 0.00 0.00 0.00 3.86
1088 1123 1.678627 CTCCTCGTCGTCATCCTCATT 59.321 52.381 0.00 0.00 0.00 2.57
1149 1184 1.874019 CCTCAACGACATCGAGCGG 60.874 63.158 8.54 1.06 43.02 5.52
1560 1613 2.622645 CGTACGTTAATCTCTCGGTCG 58.377 52.381 7.22 0.00 0.00 4.79
1563 1616 2.354259 ACGTTAATCTCTCGGTCGAGT 58.646 47.619 18.18 3.79 42.49 4.18
1568 1621 1.670791 ATCTCTCGGTCGAGTCCTTC 58.329 55.000 18.18 0.00 42.49 3.46
1646 1716 1.761244 CGCACACGCACTTCACTTGA 61.761 55.000 0.00 0.00 38.40 3.02
1660 1730 5.183904 ACTTCACTTGATTAACCTCCATTGC 59.816 40.000 0.00 0.00 0.00 3.56
1680 1751 2.476241 GCCGCCAATTTCACTCTTTTTG 59.524 45.455 0.00 0.00 0.00 2.44
1694 1765 6.861055 TCACTCTTTTTGGCGAATAATTTCAC 59.139 34.615 0.00 0.00 0.00 3.18
1695 1766 6.640499 CACTCTTTTTGGCGAATAATTTCACA 59.360 34.615 0.00 0.00 0.00 3.58
1700 1771 9.956797 CTTTTTGGCGAATAATTTCACAATTAG 57.043 29.630 0.00 0.00 38.09 1.73
1701 1772 9.698309 TTTTTGGCGAATAATTTCACAATTAGA 57.302 25.926 0.00 0.00 38.09 2.10
1702 1773 8.909708 TTTGGCGAATAATTTCACAATTAGAG 57.090 30.769 0.00 0.00 38.09 2.43
1703 1774 7.624360 TGGCGAATAATTTCACAATTAGAGT 57.376 32.000 0.00 0.00 38.09 3.24
1705 1776 6.414987 GGCGAATAATTTCACAATTAGAGTGC 59.585 38.462 0.00 0.00 38.09 4.40
1706 1777 6.966632 GCGAATAATTTCACAATTAGAGTGCA 59.033 34.615 0.00 0.00 38.09 4.57
1707 1778 7.044706 GCGAATAATTTCACAATTAGAGTGCAC 60.045 37.037 9.40 9.40 38.09 4.57
1717 1788 8.967918 TCACAATTAGAGTGCACTATTACTACT 58.032 33.333 21.73 13.13 36.93 2.57
1722 1793 8.674263 TTAGAGTGCACTATTACTACTACTCC 57.326 38.462 21.73 1.47 35.19 3.85
1747 1828 9.119418 CCATGTACATGAACCATTATGAACTTA 57.881 33.333 32.72 0.00 41.20 2.24
1800 1881 6.600822 AGAATTGAAGTCGATGATTTCCATGT 59.399 34.615 0.00 0.00 35.17 3.21
1808 1889 3.005050 CGATGATTTCCATGTTGGGGATG 59.995 47.826 0.00 0.00 38.32 3.51
1809 1890 2.109774 TGATTTCCATGTTGGGGATGC 58.890 47.619 0.00 0.00 38.32 3.91
1810 1891 2.109774 GATTTCCATGTTGGGGATGCA 58.890 47.619 0.00 0.00 38.32 3.96
1811 1892 2.250921 TTTCCATGTTGGGGATGCAT 57.749 45.000 0.00 0.00 38.32 3.96
1851 1936 5.909477 TCCACACTAGAATGGGTAATAACG 58.091 41.667 14.50 0.00 36.56 3.18
1856 1941 7.010183 CACACTAGAATGGGTAATAACGAACTG 59.990 40.741 0.00 0.00 0.00 3.16
1861 1946 7.490000 AGAATGGGTAATAACGAACTGTAGAG 58.510 38.462 0.00 0.00 0.00 2.43
1862 1947 6.786967 ATGGGTAATAACGAACTGTAGAGT 57.213 37.500 0.00 0.00 0.00 3.24
1863 1948 6.594788 TGGGTAATAACGAACTGTAGAGTT 57.405 37.500 4.69 4.69 45.59 3.01
1874 2066 5.871396 AACTGTAGAGTTCCTGAACAGAA 57.129 39.130 12.21 0.00 38.01 3.02
1995 2198 1.338484 GGGTACACGGGAGAAAAGACC 60.338 57.143 0.00 0.00 0.00 3.85
2060 2268 0.730834 CGTGAGCCACTTGAGTCGAG 60.731 60.000 5.79 5.79 31.34 4.04
2069 2277 2.035961 CACTTGAGTCGAGGAACTTGGA 59.964 50.000 12.19 0.00 41.55 3.53
2125 2333 1.323534 GCGATGTAGTACGTGGCAAAG 59.676 52.381 20.75 0.00 38.48 2.77
2240 2487 2.579201 CGACGAGGGGCAGTGATT 59.421 61.111 0.00 0.00 0.00 2.57
2242 2489 0.527817 CGACGAGGGGCAGTGATTAC 60.528 60.000 0.00 0.00 0.00 1.89
2244 2491 0.824759 ACGAGGGGCAGTGATTACTC 59.175 55.000 0.00 0.00 34.07 2.59
2245 2492 0.824109 CGAGGGGCAGTGATTACTCA 59.176 55.000 0.00 0.00 34.07 3.41
2255 2502 1.649171 GTGATTACTCACGCAGTCACG 59.351 52.381 0.00 0.00 41.61 4.35
2256 2503 1.538075 TGATTACTCACGCAGTCACGA 59.462 47.619 0.00 0.00 41.61 4.35
2257 2504 2.163613 TGATTACTCACGCAGTCACGAT 59.836 45.455 0.00 0.00 41.61 3.73
2258 2505 1.977188 TTACTCACGCAGTCACGATG 58.023 50.000 0.00 0.00 41.61 3.84
2259 2506 0.170339 TACTCACGCAGTCACGATGG 59.830 55.000 0.00 0.00 41.61 3.51
2260 2507 1.212751 CTCACGCAGTCACGATGGA 59.787 57.895 0.00 0.00 41.61 3.41
2261 2508 0.388520 CTCACGCAGTCACGATGGAA 60.389 55.000 0.00 0.00 41.61 3.53
2262 2509 0.246360 TCACGCAGTCACGATGGAAT 59.754 50.000 0.00 0.00 41.61 3.01
2263 2510 1.078709 CACGCAGTCACGATGGAATT 58.921 50.000 0.00 0.00 41.61 2.17
2264 2511 1.464608 CACGCAGTCACGATGGAATTT 59.535 47.619 0.00 0.00 41.61 1.82
2265 2512 1.732259 ACGCAGTCACGATGGAATTTC 59.268 47.619 0.00 0.00 29.74 2.17
2266 2513 2.002586 CGCAGTCACGATGGAATTTCT 58.997 47.619 0.00 0.00 34.06 2.52
2267 2514 3.186909 CGCAGTCACGATGGAATTTCTA 58.813 45.455 0.00 0.00 34.06 2.10
2268 2515 3.616821 CGCAGTCACGATGGAATTTCTAA 59.383 43.478 0.00 0.00 34.06 2.10
2269 2516 4.092821 CGCAGTCACGATGGAATTTCTAAA 59.907 41.667 0.00 0.00 34.06 1.85
2270 2517 5.390461 CGCAGTCACGATGGAATTTCTAAAA 60.390 40.000 0.00 0.00 34.06 1.52
2271 2518 6.555315 GCAGTCACGATGGAATTTCTAAAAT 58.445 36.000 0.00 0.00 0.00 1.82
2272 2519 6.688813 GCAGTCACGATGGAATTTCTAAAATC 59.311 38.462 0.00 0.00 0.00 2.17
2273 2520 7.414540 GCAGTCACGATGGAATTTCTAAAATCT 60.415 37.037 0.00 0.00 0.00 2.40
2274 2521 8.119226 CAGTCACGATGGAATTTCTAAAATCTC 58.881 37.037 0.00 0.00 0.00 2.75
2275 2522 7.824289 AGTCACGATGGAATTTCTAAAATCTCA 59.176 33.333 0.00 0.00 0.00 3.27
2276 2523 8.450964 GTCACGATGGAATTTCTAAAATCTCAA 58.549 33.333 0.00 0.00 0.00 3.02
2277 2524 9.008965 TCACGATGGAATTTCTAAAATCTCAAA 57.991 29.630 0.00 0.00 0.00 2.69
2278 2525 9.624697 CACGATGGAATTTCTAAAATCTCAAAA 57.375 29.630 0.00 0.00 0.00 2.44
2279 2526 9.846248 ACGATGGAATTTCTAAAATCTCAAAAG 57.154 29.630 0.00 0.00 0.00 2.27
2295 2542 9.987272 AATCTCAAAAGAAAATGTTTAAGAGGG 57.013 29.630 0.00 0.00 34.49 4.30
2296 2543 8.760980 TCTCAAAAGAAAATGTTTAAGAGGGA 57.239 30.769 0.00 0.00 0.00 4.20
2297 2544 8.630037 TCTCAAAAGAAAATGTTTAAGAGGGAC 58.370 33.333 0.00 0.00 0.00 4.46
2298 2545 7.422399 TCAAAAGAAAATGTTTAAGAGGGACG 58.578 34.615 0.00 0.00 0.00 4.79
2299 2546 6.954487 AAAGAAAATGTTTAAGAGGGACGT 57.046 33.333 0.00 0.00 0.00 4.34
2300 2547 5.941948 AGAAAATGTTTAAGAGGGACGTG 57.058 39.130 0.00 0.00 0.00 4.49
2301 2548 5.374071 AGAAAATGTTTAAGAGGGACGTGT 58.626 37.500 0.00 0.00 0.00 4.49
2302 2549 5.238650 AGAAAATGTTTAAGAGGGACGTGTG 59.761 40.000 0.00 0.00 0.00 3.82
2303 2550 3.764237 ATGTTTAAGAGGGACGTGTGT 57.236 42.857 0.00 0.00 0.00 3.72
2304 2551 3.102052 TGTTTAAGAGGGACGTGTGTC 57.898 47.619 0.00 0.00 44.72 3.67
2305 2552 2.056577 GTTTAAGAGGGACGTGTGTCG 58.943 52.381 0.00 0.00 46.49 4.35
2306 2553 0.599558 TTAAGAGGGACGTGTGTCGG 59.400 55.000 0.00 0.00 46.49 4.79
2307 2554 0.538057 TAAGAGGGACGTGTGTCGGT 60.538 55.000 0.00 0.00 46.49 4.69
2308 2555 0.538057 AAGAGGGACGTGTGTCGGTA 60.538 55.000 0.00 0.00 46.49 4.02
2309 2556 1.211190 GAGGGACGTGTGTCGGTAC 59.789 63.158 0.00 0.00 46.49 3.34
2310 2557 2.205243 GAGGGACGTGTGTCGGTACC 62.205 65.000 0.16 0.16 46.49 3.34
2311 2558 2.563798 GGGACGTGTGTCGGTACCA 61.564 63.158 13.54 0.00 46.49 3.25
2335 2582 4.279922 CCGAGGTTGGTTTTCCTTGTAATT 59.720 41.667 0.00 0.00 41.38 1.40
2412 2715 2.434428 AGTTCTCTGAAGCAATGCCAG 58.566 47.619 0.00 3.14 0.00 4.85
2417 2720 0.245539 CTGAAGCAATGCCAGGGTTG 59.754 55.000 0.00 0.00 0.00 3.77
2422 2725 1.322538 GCAATGCCAGGGTTGGGTAG 61.323 60.000 0.00 0.00 45.16 3.18
2471 2775 7.805083 AGATGCCTCACTGGTATAGATTTAT 57.195 36.000 0.00 0.00 41.35 1.40
2472 2776 8.212259 AGATGCCTCACTGGTATAGATTTATT 57.788 34.615 0.00 0.00 41.35 1.40
2473 2777 9.326489 AGATGCCTCACTGGTATAGATTTATTA 57.674 33.333 0.00 0.00 41.35 0.98
2501 2805 9.542462 TTTATAATTGACTAATTCAGGGAGTCG 57.458 33.333 1.86 0.00 42.10 4.18
2617 2921 9.527157 TGTCCTGGTTTTGAAATATTCATCTTA 57.473 29.630 0.00 0.00 39.84 2.10
2682 3010 9.877178 ATACTGAAGTATCCAGAAGTGTAAAAG 57.123 33.333 0.00 0.00 36.57 2.27
2711 3039 1.339727 CGGGTAGAAAGAAACCAGGGG 60.340 57.143 0.00 0.00 37.51 4.79
2774 3102 2.328099 CCGGCAGACACTTTCCAGC 61.328 63.158 0.00 0.00 0.00 4.85
2919 3247 3.197333 CGGAGATATGGATGAAGCCAGAT 59.803 47.826 0.00 0.00 42.26 2.90
3040 3372 0.666274 CCGGCTAATATTCTCGCGCA 60.666 55.000 8.75 0.00 0.00 6.09
3133 3465 5.313240 AGAATGGGGGTATGTATATGCTTGT 59.687 40.000 0.00 0.00 0.00 3.16
3139 3471 6.001460 GGGGTATGTATATGCTTGTGCTAAA 58.999 40.000 0.00 0.00 40.48 1.85
3143 3475 7.228706 GGTATGTATATGCTTGTGCTAAACCTT 59.771 37.037 0.00 0.00 40.48 3.50
3147 3479 1.608590 TGCTTGTGCTAAACCTTGCTC 59.391 47.619 0.00 0.00 40.48 4.26
3178 3510 2.553247 GCCTTTCAGCTAACCTGGAACT 60.553 50.000 0.00 0.00 42.05 3.01
3402 3734 1.530323 TCGACGTGGATCACTTCAGA 58.470 50.000 0.00 1.93 33.16 3.27
3510 3842 2.234908 CTGGTCCAGGGTAAGAGTCAAG 59.765 54.545 11.46 0.00 0.00 3.02
3748 4080 4.109050 CGCTTCAGTACAGGAAAGAGATC 58.891 47.826 0.00 0.00 0.00 2.75
3781 4113 5.125356 GGTACTACCCTAGTTGAGAGACTC 58.875 50.000 0.00 0.00 40.14 3.36
3848 4197 7.499321 TTAATAAAACACTTCTTTCTGCCGA 57.501 32.000 0.00 0.00 0.00 5.54
3867 4224 6.486253 GCCGATAAAATTATCTGCAGATCA 57.514 37.500 31.92 22.30 44.60 2.92
4118 4475 0.758734 TGGGATATCCTTCCAGCACG 59.241 55.000 21.18 0.00 37.53 5.34
4136 4493 3.122780 GCACGAAAATTTACATTGTGGCC 59.877 43.478 0.00 0.00 0.00 5.36
4214 4571 6.015350 ACATTTACACACACTACAGTCTAGCT 60.015 38.462 0.00 0.00 0.00 3.32
4307 4664 2.092838 GCAGAGCGATGTCTTTGTGTAC 59.907 50.000 0.00 0.00 0.00 2.90
4403 4760 3.497262 CCGACAGGTAAGTTCTTGGAAAC 59.503 47.826 0.00 0.00 0.00 2.78
4411 4768 2.301346 AGTTCTTGGAAACTGCAGGTG 58.699 47.619 19.93 0.00 38.06 4.00
4504 4862 2.668457 GCTCATTGACAAACTCGACGAT 59.332 45.455 0.00 0.00 0.00 3.73
4633 4991 8.024145 AGGAATACTTCTACTCAAACCCTATG 57.976 38.462 0.00 0.00 0.00 2.23
4665 5023 3.486285 GCAAAAAGGTGCAGAGAGC 57.514 52.632 0.00 0.00 44.29 4.09
4785 5143 2.858476 ACATGACAGGGGTGGCCA 60.858 61.111 0.00 0.00 0.00 5.36
4830 5189 2.746362 GACAGAGACCAGCCATTTTGAG 59.254 50.000 0.00 0.00 0.00 3.02
4966 5325 5.220989 CGAAGTACTTGAAGGATCATACCGA 60.221 44.000 14.14 0.00 34.96 4.69
5281 5668 5.053145 GCTCCTTTATAGATGATATGGGCG 58.947 45.833 0.00 0.00 0.00 6.13
5393 5783 1.689233 AGCCGCCCTGAATACCTGA 60.689 57.895 0.00 0.00 0.00 3.86
5413 5811 5.280164 CCTGATTCTATCCCCAAATCGATGA 60.280 44.000 0.00 0.00 33.13 2.92
5414 5812 6.378661 TGATTCTATCCCCAAATCGATGAT 57.621 37.500 0.00 0.00 33.13 2.45
5415 5813 6.175471 TGATTCTATCCCCAAATCGATGATG 58.825 40.000 0.00 1.16 33.13 3.07
5416 5814 5.823861 TTCTATCCCCAAATCGATGATGA 57.176 39.130 11.86 0.52 0.00 2.92
5420 5818 4.011966 TCCCCAAATCGATGATGAGATG 57.988 45.455 11.86 0.00 0.00 2.90
5428 5826 4.780275 TCGATGATGAGATGATCTGGAC 57.220 45.455 0.00 0.00 0.00 4.02
5491 5889 1.079057 GCAAGGACGGGGAAGAGAC 60.079 63.158 0.00 0.00 0.00 3.36
5492 5890 1.215647 CAAGGACGGGGAAGAGACG 59.784 63.158 0.00 0.00 0.00 4.18
5536 5934 2.903855 CAGCATCATCCGCCACCC 60.904 66.667 0.00 0.00 0.00 4.61
5662 6074 5.025453 TCCGTATTACCCCTTAACTTGTCT 58.975 41.667 0.00 0.00 0.00 3.41
5664 6076 6.667414 TCCGTATTACCCCTTAACTTGTCTTA 59.333 38.462 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.598680 CCTTGATCGATCGACTGGCC 60.599 60.000 22.06 8.02 0.00 5.36
133 134 5.050363 TGAGACATTTCTTACTGTGTTTCGC 60.050 40.000 0.00 0.00 30.77 4.70
145 146 1.615384 GGCCTGCCTGAGACATTTCTT 60.615 52.381 0.00 0.00 29.47 2.52
146 147 0.034670 GGCCTGCCTGAGACATTTCT 60.035 55.000 0.00 0.00 33.37 2.52
147 148 0.322816 TGGCCTGCCTGAGACATTTC 60.323 55.000 9.97 0.00 36.94 2.17
154 155 1.001764 TGAACATGGCCTGCCTGAG 60.002 57.895 9.97 1.90 36.94 3.35
202 204 7.221838 TGAAATGGAAATCGTTTTGTGAGTTTC 59.778 33.333 0.00 2.04 34.94 2.78
259 265 2.034066 CGTGTCAACCCATGGGCT 59.966 61.111 31.73 17.32 39.32 5.19
264 270 2.045561 TTTGTGACGTGTCAACCCAT 57.954 45.000 3.92 0.00 41.85 4.00
266 272 1.202211 GGTTTTGTGACGTGTCAACCC 60.202 52.381 3.92 0.00 41.85 4.11
268 274 3.168193 CAAGGTTTTGTGACGTGTCAAC 58.832 45.455 3.92 0.00 41.85 3.18
284 290 3.239253 AGGACGTTCGGGCAAGGT 61.239 61.111 0.00 0.00 35.75 3.50
439 447 8.809468 ATGAGAGTAGTAACTGACAAGATGTA 57.191 34.615 0.00 0.00 35.56 2.29
530 539 4.509737 GTAGGCTCCGTCGTGGCC 62.510 72.222 15.15 15.15 45.57 5.36
531 540 4.509737 GGTAGGCTCCGTCGTGGC 62.510 72.222 0.00 0.00 37.80 5.01
532 541 3.066190 TGGTAGGCTCCGTCGTGG 61.066 66.667 0.00 0.00 40.09 4.94
533 542 2.181021 GTGGTAGGCTCCGTCGTG 59.819 66.667 0.00 0.00 0.00 4.35
534 543 3.066814 GGTGGTAGGCTCCGTCGT 61.067 66.667 0.00 0.00 0.00 4.34
535 544 3.066190 TGGTGGTAGGCTCCGTCG 61.066 66.667 0.00 0.00 0.00 5.12
536 545 2.577593 GTGGTGGTAGGCTCCGTC 59.422 66.667 0.00 0.00 0.00 4.79
537 546 3.001406 GGTGGTGGTAGGCTCCGT 61.001 66.667 0.00 0.00 0.00 4.69
538 547 3.000819 TGGTGGTGGTAGGCTCCG 61.001 66.667 0.00 0.00 0.00 4.63
539 548 1.489560 AAGTGGTGGTGGTAGGCTCC 61.490 60.000 0.00 0.00 0.00 4.70
540 549 0.321653 CAAGTGGTGGTGGTAGGCTC 60.322 60.000 0.00 0.00 0.00 4.70
541 550 1.761174 CAAGTGGTGGTGGTAGGCT 59.239 57.895 0.00 0.00 0.00 4.58
542 551 1.303317 CCAAGTGGTGGTGGTAGGC 60.303 63.158 0.00 0.00 43.20 3.93
620 629 2.439960 TTCCATATGCGGGTCGGCT 61.440 57.895 0.00 0.00 0.00 5.52
678 687 3.057876 CGTGCTTTTTGTATGCCCAAGTA 60.058 43.478 0.00 0.00 0.00 2.24
683 692 2.736890 GCGTGCTTTTTGTATGCCC 58.263 52.632 0.00 0.00 37.33 5.36
721 740 4.323477 TCGTTGGTTGAGGCCGGG 62.323 66.667 2.18 0.00 0.00 5.73
722 741 3.047877 GTCGTTGGTTGAGGCCGG 61.048 66.667 0.00 0.00 0.00 6.13
723 742 3.047877 GGTCGTTGGTTGAGGCCG 61.048 66.667 0.00 0.00 0.00 6.13
778 801 1.419107 CTCGTCGTCGTCTGGATCGA 61.419 60.000 1.33 0.00 38.33 3.59
809 832 2.821810 TGTGTGTGTGTGTGCCCG 60.822 61.111 0.00 0.00 0.00 6.13
811 834 1.024046 TCTGTGTGTGTGTGTGTGCC 61.024 55.000 0.00 0.00 0.00 5.01
812 835 0.374758 CTCTGTGTGTGTGTGTGTGC 59.625 55.000 0.00 0.00 0.00 4.57
813 836 0.374758 GCTCTGTGTGTGTGTGTGTG 59.625 55.000 0.00 0.00 0.00 3.82
814 837 1.083806 CGCTCTGTGTGTGTGTGTGT 61.084 55.000 0.00 0.00 0.00 3.72
815 838 1.637934 CGCTCTGTGTGTGTGTGTG 59.362 57.895 0.00 0.00 0.00 3.82
816 839 2.173669 GCGCTCTGTGTGTGTGTGT 61.174 57.895 0.00 0.00 0.00 3.72
817 840 2.628106 GCGCTCTGTGTGTGTGTG 59.372 61.111 0.00 0.00 0.00 3.82
818 841 2.961721 CGCGCTCTGTGTGTGTGT 60.962 61.111 5.56 0.00 32.50 3.72
877 900 4.796231 GATCGAGCGTGGCGGTGT 62.796 66.667 0.00 0.00 37.83 4.16
881 904 4.538283 AGTCGATCGAGCGTGGCG 62.538 66.667 23.61 3.74 0.00 5.69
1045 1068 4.596585 GGTGGTGGTGGTGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
1080 1112 2.035632 GAGGAGGACGACAATGAGGAT 58.964 52.381 0.00 0.00 0.00 3.24
1086 1121 2.722201 GGCGGAGGAGGACGACAAT 61.722 63.158 0.00 0.00 38.20 2.71
1539 1577 2.370515 GACCGAGAGATTAACGTACGC 58.629 52.381 16.72 0.00 0.00 4.42
1560 1613 9.457436 TGGTTGTAATAAATTAAGGAAGGACTC 57.543 33.333 0.00 0.00 0.00 3.36
1594 1651 3.724508 ACATGCATGAAAAACCGTTGA 57.275 38.095 32.75 0.00 0.00 3.18
1595 1652 4.149747 GGTTACATGCATGAAAAACCGTTG 59.850 41.667 32.75 3.64 33.04 4.10
1630 1700 3.250040 GGTTAATCAAGTGAAGTGCGTGT 59.750 43.478 0.00 0.00 0.00 4.49
1646 1716 0.033601 TGGCGGCAATGGAGGTTAAT 60.034 50.000 10.22 0.00 0.00 1.40
1660 1730 3.059166 CCAAAAAGAGTGAAATTGGCGG 58.941 45.455 0.00 0.00 34.67 6.13
1680 1751 6.414987 GCACTCTAATTGTGAAATTATTCGCC 59.585 38.462 0.00 0.00 43.85 5.54
1700 1771 6.939132 TGGAGTAGTAGTAATAGTGCACTC 57.061 41.667 25.56 9.12 0.00 3.51
1701 1772 6.834451 ACATGGAGTAGTAGTAATAGTGCACT 59.166 38.462 25.12 25.12 28.33 4.40
1702 1773 7.040473 ACATGGAGTAGTAGTAATAGTGCAC 57.960 40.000 9.40 9.40 28.33 4.57
1703 1774 7.776500 TGTACATGGAGTAGTAGTAATAGTGCA 59.224 37.037 8.78 8.78 32.19 4.57
1710 1781 7.616542 TGGTTCATGTACATGGAGTAGTAGTAA 59.383 37.037 30.56 13.89 39.24 2.24
1712 1783 5.955959 TGGTTCATGTACATGGAGTAGTAGT 59.044 40.000 30.56 0.00 39.24 2.73
1715 1786 5.957771 ATGGTTCATGTACATGGAGTAGT 57.042 39.130 30.56 13.41 39.24 2.73
1717 1788 8.028652 TCATAATGGTTCATGTACATGGAGTA 57.971 34.615 30.56 17.03 39.24 2.59
1718 1789 6.899089 TCATAATGGTTCATGTACATGGAGT 58.101 36.000 30.56 16.19 39.24 3.85
1719 1790 7.500227 AGTTCATAATGGTTCATGTACATGGAG 59.500 37.037 30.56 12.41 39.24 3.86
1720 1791 7.345691 AGTTCATAATGGTTCATGTACATGGA 58.654 34.615 30.56 22.97 39.24 3.41
1721 1792 7.572523 AGTTCATAATGGTTCATGTACATGG 57.427 36.000 30.56 15.41 39.24 3.66
1747 1828 6.149807 TCGCCCAACTTCGAAAATATAAAACT 59.850 34.615 0.00 0.00 0.00 2.66
1760 1841 2.295253 ATTCTACTCGCCCAACTTCG 57.705 50.000 0.00 0.00 0.00 3.79
1825 1910 7.042051 CGTTATTACCCATTCTAGTGTGGAATG 60.042 40.741 14.97 6.13 45.45 2.67
1856 1941 4.449405 GTGCTTTCTGTTCAGGAACTCTAC 59.551 45.833 12.86 0.24 41.67 2.59
1861 1946 2.287248 GCAGTGCTTTCTGTTCAGGAAC 60.287 50.000 8.18 5.23 41.50 3.62
1862 1947 1.949525 GCAGTGCTTTCTGTTCAGGAA 59.050 47.619 8.18 0.00 37.70 3.36
1863 1948 1.597742 GCAGTGCTTTCTGTTCAGGA 58.402 50.000 8.18 0.00 37.70 3.86
1864 1949 0.595095 GGCAGTGCTTTCTGTTCAGG 59.405 55.000 16.11 0.00 37.70 3.86
1865 1950 0.595095 GGGCAGTGCTTTCTGTTCAG 59.405 55.000 16.11 0.00 37.70 3.02
1867 1952 1.032014 TTGGGCAGTGCTTTCTGTTC 58.968 50.000 16.11 0.00 37.70 3.18
1874 2066 2.444281 AGCAAATTGGGCAGTGCTT 58.556 47.368 16.11 0.00 44.79 3.91
1995 2198 4.628333 ACAAAATACTGGTCGTTATCACCG 59.372 41.667 0.00 0.00 36.61 4.94
2055 2263 0.524862 TACGCTCCAAGTTCCTCGAC 59.475 55.000 0.00 0.00 0.00 4.20
2060 2268 1.066430 TGGTCATACGCTCCAAGTTCC 60.066 52.381 0.00 0.00 0.00 3.62
2125 2333 5.336729 CGCGCATTTTTCAAAAGAAATTTCC 59.663 36.000 14.61 0.00 0.00 3.13
2138 2368 2.575589 AAAACATGCGCGCATTTTTC 57.424 40.000 41.43 13.82 35.90 2.29
2139 2369 2.543430 AGAAAAACATGCGCGCATTTTT 59.457 36.364 38.08 38.08 37.76 1.94
2140 2370 2.134346 AGAAAAACATGCGCGCATTTT 58.866 38.095 41.73 37.14 33.90 1.82
2226 2473 0.824109 TGAGTAATCACTGCCCCTCG 59.176 55.000 0.00 0.00 34.21 4.63
2228 2475 0.537188 CGTGAGTAATCACTGCCCCT 59.463 55.000 20.01 0.00 38.40 4.79
2240 2487 0.170339 CCATCGTGACTGCGTGAGTA 59.830 55.000 0.00 0.00 33.83 2.59
2242 2489 0.388520 TTCCATCGTGACTGCGTGAG 60.389 55.000 0.00 0.00 0.00 3.51
2244 2491 1.078709 AATTCCATCGTGACTGCGTG 58.921 50.000 0.00 0.00 0.00 5.34
2245 2492 1.732259 GAAATTCCATCGTGACTGCGT 59.268 47.619 0.00 0.00 0.00 5.24
2247 2494 5.545658 TTTAGAAATTCCATCGTGACTGC 57.454 39.130 0.00 0.00 0.00 4.40
2248 2495 7.978982 AGATTTTAGAAATTCCATCGTGACTG 58.021 34.615 0.00 0.00 0.00 3.51
2249 2496 7.824289 TGAGATTTTAGAAATTCCATCGTGACT 59.176 33.333 0.00 0.00 0.00 3.41
2251 2498 8.560355 TTGAGATTTTAGAAATTCCATCGTGA 57.440 30.769 0.00 0.00 0.00 4.35
2252 2499 9.624697 TTTTGAGATTTTAGAAATTCCATCGTG 57.375 29.630 0.00 0.00 0.00 4.35
2253 2500 9.846248 CTTTTGAGATTTTAGAAATTCCATCGT 57.154 29.630 0.00 0.00 0.00 3.73
2269 2516 9.987272 CCCTCTTAAACATTTTCTTTTGAGATT 57.013 29.630 0.00 0.00 29.80 2.40
2270 2517 9.367160 TCCCTCTTAAACATTTTCTTTTGAGAT 57.633 29.630 0.00 0.00 29.80 2.75
2271 2518 8.630037 GTCCCTCTTAAACATTTTCTTTTGAGA 58.370 33.333 0.00 0.00 0.00 3.27
2272 2519 7.591426 CGTCCCTCTTAAACATTTTCTTTTGAG 59.409 37.037 0.00 0.00 0.00 3.02
2273 2520 7.067737 ACGTCCCTCTTAAACATTTTCTTTTGA 59.932 33.333 0.00 0.00 0.00 2.69
2274 2521 7.167468 CACGTCCCTCTTAAACATTTTCTTTTG 59.833 37.037 0.00 0.00 0.00 2.44
2275 2522 7.147966 ACACGTCCCTCTTAAACATTTTCTTTT 60.148 33.333 0.00 0.00 0.00 2.27
2276 2523 6.320418 ACACGTCCCTCTTAAACATTTTCTTT 59.680 34.615 0.00 0.00 0.00 2.52
2277 2524 5.826208 ACACGTCCCTCTTAAACATTTTCTT 59.174 36.000 0.00 0.00 0.00 2.52
2278 2525 5.238650 CACACGTCCCTCTTAAACATTTTCT 59.761 40.000 0.00 0.00 0.00 2.52
2279 2526 5.008316 ACACACGTCCCTCTTAAACATTTTC 59.992 40.000 0.00 0.00 0.00 2.29
2280 2527 4.885325 ACACACGTCCCTCTTAAACATTTT 59.115 37.500 0.00 0.00 0.00 1.82
2281 2528 4.457466 ACACACGTCCCTCTTAAACATTT 58.543 39.130 0.00 0.00 0.00 2.32
2282 2529 4.062991 GACACACGTCCCTCTTAAACATT 58.937 43.478 0.00 0.00 36.02 2.71
2283 2530 3.660865 GACACACGTCCCTCTTAAACAT 58.339 45.455 0.00 0.00 36.02 2.71
2284 2531 2.544277 CGACACACGTCCCTCTTAAACA 60.544 50.000 0.00 0.00 39.11 2.83
2285 2532 2.056577 CGACACACGTCCCTCTTAAAC 58.943 52.381 0.00 0.00 39.11 2.01
2286 2533 1.000060 CCGACACACGTCCCTCTTAAA 60.000 52.381 0.00 0.00 39.11 1.52
2287 2534 0.599558 CCGACACACGTCCCTCTTAA 59.400 55.000 0.00 0.00 39.11 1.85
2288 2535 0.538057 ACCGACACACGTCCCTCTTA 60.538 55.000 0.00 0.00 39.11 2.10
2289 2536 0.538057 TACCGACACACGTCCCTCTT 60.538 55.000 0.00 0.00 39.11 2.85
2290 2537 1.073722 TACCGACACACGTCCCTCT 59.926 57.895 0.00 0.00 39.11 3.69
2291 2538 1.211190 GTACCGACACACGTCCCTC 59.789 63.158 0.00 0.00 39.11 4.30
2292 2539 2.270986 GGTACCGACACACGTCCCT 61.271 63.158 0.00 0.00 39.11 4.20
2293 2540 2.259511 GGTACCGACACACGTCCC 59.740 66.667 0.00 0.00 39.11 4.46
2294 2541 1.372128 GTGGTACCGACACACGTCC 60.372 63.158 7.57 0.00 39.11 4.79
2295 2542 1.372128 GGTGGTACCGACACACGTC 60.372 63.158 7.57 0.00 40.54 4.34
2296 2543 2.730094 GGTGGTACCGACACACGT 59.270 61.111 7.57 0.00 40.54 4.49
2309 2556 0.179001 AGGAAAACCAACCTCGGTGG 60.179 55.000 0.00 0.00 39.95 4.61
2310 2557 1.336755 CAAGGAAAACCAACCTCGGTG 59.663 52.381 0.00 0.00 39.95 4.94
2311 2558 1.064240 ACAAGGAAAACCAACCTCGGT 60.064 47.619 0.00 0.00 42.71 4.69
2321 2568 4.023536 TCAGCCGACAATTACAAGGAAAAC 60.024 41.667 0.00 0.00 0.00 2.43
2325 2572 3.627395 ATCAGCCGACAATTACAAGGA 57.373 42.857 0.00 0.00 0.00 3.36
2335 2582 8.705134 CGTATGTTATAAAATTATCAGCCGACA 58.295 33.333 0.00 0.00 0.00 4.35
2501 2805 7.671495 AATAAAAGTCATTGCATGGAAAACC 57.329 32.000 2.94 0.00 0.00 3.27
2550 2854 0.809241 GAATGGAGAGCACCTCAGCG 60.809 60.000 8.16 0.00 43.76 5.18
2617 2921 3.971971 AGGACCTGGTAGTTAGTTGTGTT 59.028 43.478 0.00 0.00 0.00 3.32
2682 3010 1.009829 CTTTCTACCCGTGCAGCATC 58.990 55.000 0.00 0.00 0.00 3.91
2774 3102 4.672542 CGAACATAGGCACAAGATTGTTGG 60.673 45.833 0.00 0.00 39.91 3.77
2919 3247 0.178885 ACTGGCTGTAACCCCCACTA 60.179 55.000 0.00 0.00 0.00 2.74
3040 3372 1.180029 GCATTGTCAGTCCCTGCAAT 58.820 50.000 0.00 7.57 38.07 3.56
3133 3465 2.548057 CGACAAAGAGCAAGGTTTAGCA 59.452 45.455 0.00 0.00 0.00 3.49
3139 3471 1.166531 GCACCGACAAAGAGCAAGGT 61.167 55.000 0.00 0.00 0.00 3.50
3143 3475 0.465460 AAAGGCACCGACAAAGAGCA 60.465 50.000 0.00 0.00 0.00 4.26
3147 3479 0.040067 GCTGAAAGGCACCGACAAAG 60.040 55.000 0.00 0.00 0.00 2.77
3402 3734 5.242393 CACAATGTCCTCCTTCAATGTTTCT 59.758 40.000 0.00 0.00 0.00 2.52
3748 4080 4.704057 ACTAGGGTAGTACCAAGTTCTTCG 59.296 45.833 20.97 5.99 41.02 3.79
3781 4113 2.143876 AATGGTCCGATCCCCTTTTG 57.856 50.000 0.00 0.00 0.00 2.44
3848 4197 9.228949 GGATCAGTGATCTGCAGATAATTTTAT 57.771 33.333 28.78 17.13 41.10 1.40
3863 4220 7.804843 AATGAAGAATCAAGGATCAGTGATC 57.195 36.000 22.69 22.69 39.49 2.92
3864 4221 7.416438 GCAAATGAAGAATCAAGGATCAGTGAT 60.416 37.037 4.98 4.98 39.49 3.06
3865 4222 6.127814 GCAAATGAAGAATCAAGGATCAGTGA 60.128 38.462 0.00 0.00 39.49 3.41
3866 4223 6.034591 GCAAATGAAGAATCAAGGATCAGTG 58.965 40.000 0.00 0.00 39.49 3.66
3867 4224 5.950549 AGCAAATGAAGAATCAAGGATCAGT 59.049 36.000 0.00 0.00 39.49 3.41
4118 4475 3.677596 CACCGGCCACAATGTAAATTTTC 59.322 43.478 0.00 0.00 0.00 2.29
4136 4493 0.169451 GTGCCCCGTAAATTTCACCG 59.831 55.000 0.00 0.00 0.00 4.94
4214 4571 3.564644 GCGGCTCTAGTTCATCTACTGTA 59.435 47.826 0.00 0.00 0.00 2.74
4307 4664 2.132762 GCCATATTTCCGTCGTAGGTG 58.867 52.381 0.00 0.00 0.00 4.00
4403 4760 9.603921 ATCAAAATAAATAAATTCCACCTGCAG 57.396 29.630 6.78 6.78 0.00 4.41
4442 4800 9.755064 CCTACAAACAAGAAATAAGTTATGACG 57.245 33.333 0.00 0.00 0.00 4.35
4665 5023 5.947228 TGAGATAAACCTGCTTCACTTTG 57.053 39.130 0.00 0.00 0.00 2.77
4732 5090 0.321210 CCATCCGTGTTACACCTGCA 60.321 55.000 10.10 0.00 0.00 4.41
4785 5143 9.138596 GTCAGTTAACTAGGATCCTCTCTATTT 57.861 37.037 20.22 3.75 0.00 1.40
4830 5189 7.769044 TGTAGTCAGCCTAGGAAATAATCAAAC 59.231 37.037 14.75 0.00 0.00 2.93
5259 5639 5.363868 TCCGCCCATATCATCTATAAAGGAG 59.636 44.000 0.00 0.00 0.00 3.69
5260 5640 5.277250 TCCGCCCATATCATCTATAAAGGA 58.723 41.667 0.00 0.00 0.00 3.36
5266 5646 8.907829 AGATAATATCCGCCCATATCATCTAT 57.092 34.615 0.00 0.00 26.17 1.98
5281 5668 6.943899 AAGACCCTCAAGGAGATAATATCC 57.056 41.667 0.00 0.00 39.89 2.59
5343 5733 8.649841 CGTCGAAAGTTTATGGTTCAATTAGTA 58.350 33.333 0.00 0.00 0.00 1.82
5393 5783 6.214208 TCTCATCATCGATTTGGGGATAGAAT 59.786 38.462 0.00 0.00 0.00 2.40
5413 5811 1.343789 CCGCAGTCCAGATCATCTCAT 59.656 52.381 0.00 0.00 0.00 2.90
5414 5812 0.749049 CCGCAGTCCAGATCATCTCA 59.251 55.000 0.00 0.00 0.00 3.27
5415 5813 1.000385 CTCCGCAGTCCAGATCATCTC 60.000 57.143 0.00 0.00 0.00 2.75
5416 5814 1.039068 CTCCGCAGTCCAGATCATCT 58.961 55.000 0.00 0.00 0.00 2.90
5420 5818 2.801631 CCCCTCCGCAGTCCAGATC 61.802 68.421 0.00 0.00 0.00 2.75
5428 5826 2.765807 ACCAGATCCCCTCCGCAG 60.766 66.667 0.00 0.00 0.00 5.18
5468 5866 1.002773 TCTTCCCCGTCCTTGCTTTAC 59.997 52.381 0.00 0.00 0.00 2.01
5491 5889 2.125912 CGACAGCTTCAGGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
5492 5890 2.435059 GCGACAGCTTCAGGTCCC 60.435 66.667 0.00 0.00 41.01 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.