Multiple sequence alignment - TraesCS1B01G287700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G287700 chr1B 100.000 3007 0 0 1 3007 499894919 499897925 0.000000e+00 5553.0
1 TraesCS1B01G287700 chr1B 80.365 219 31 7 2713 2925 56130600 56130388 4.010000e-34 156.0
2 TraesCS1B01G287700 chr1B 81.132 106 17 3 2904 3007 626402821 626402717 6.910000e-12 82.4
3 TraesCS1B01G287700 chr1D 86.124 2234 102 79 469 2593 375647806 375645672 0.000000e+00 2217.0
4 TraesCS1B01G287700 chr1D 90.769 195 9 4 75 260 375647989 375647795 4.980000e-63 252.0
5 TraesCS1B01G287700 chr1A 86.466 1692 102 46 660 2282 474451636 474450003 0.000000e+00 1738.0
6 TraesCS1B01G287700 chr1A 82.883 222 13 5 42 260 474451996 474451797 3.080000e-40 176.0
7 TraesCS1B01G287700 chr1A 85.000 120 9 6 2399 2510 474449958 474449840 2.450000e-21 113.0
8 TraesCS1B01G287700 chr1A 91.304 69 6 0 2939 3007 455720546 455720614 8.870000e-16 95.3
9 TraesCS1B01G287700 chr1A 92.593 54 3 1 469 521 474451808 474451755 3.210000e-10 76.8
10 TraesCS1B01G287700 chr1A 100.000 30 0 0 2339 2368 474449991 474449962 4.190000e-04 56.5
11 TraesCS1B01G287700 chr2B 94.183 361 17 2 2592 2948 592771459 592771819 5.670000e-152 547.0
12 TraesCS1B01G287700 chr2B 93.352 361 14 4 2591 2948 43782085 43781732 2.660000e-145 525.0
13 TraesCS1B01G287700 chr2B 92.537 67 3 2 2942 3007 138555925 138555860 8.870000e-16 95.3
14 TraesCS1B01G287700 chr7D 92.244 361 23 3 2593 2949 377037143 377037502 9.620000e-140 507.0
15 TraesCS1B01G287700 chr3A 77.365 835 110 50 1001 1824 616493167 616492401 3.580000e-114 422.0
16 TraesCS1B01G287700 chr3A 94.203 207 10 2 260 466 184272419 184272623 6.260000e-82 315.0
17 TraesCS1B01G287700 chr3A 93.720 207 12 1 260 466 651189306 651189511 2.910000e-80 309.0
18 TraesCS1B01G287700 chr3A 93.301 209 12 2 259 467 534103662 534103868 1.050000e-79 307.0
19 TraesCS1B01G287700 chr3A 93.269 208 12 2 260 466 76343838 76343632 3.770000e-79 305.0
20 TraesCS1B01G287700 chr3A 86.982 169 15 4 1591 1754 32385658 32385492 1.840000e-42 183.0
21 TraesCS1B01G287700 chr3A 85.882 85 8 4 2926 3007 548011640 548011557 1.480000e-13 87.9
22 TraesCS1B01G287700 chr3B 76.568 845 106 58 1001 1824 630402031 630401258 2.190000e-101 379.0
23 TraesCS1B01G287700 chr3B 87.574 169 14 4 1591 1754 40908881 40908715 3.960000e-44 189.0
24 TraesCS1B01G287700 chr7A 92.975 242 13 3 2711 2948 448595633 448595392 1.720000e-92 350.0
25 TraesCS1B01G287700 chr7A 93.269 208 13 1 260 466 172915825 172916032 3.770000e-79 305.0
26 TraesCS1B01G287700 chr7A 91.270 126 11 0 2592 2717 448705610 448705485 3.990000e-39 172.0
27 TraesCS1B01G287700 chr6A 93.269 208 12 2 260 466 604910439 604910233 3.770000e-79 305.0
28 TraesCS1B01G287700 chr6A 93.237 207 12 2 260 466 471195168 471195372 1.350000e-78 303.0
29 TraesCS1B01G287700 chr2A 93.269 208 13 1 260 466 576447323 576447530 3.770000e-79 305.0
30 TraesCS1B01G287700 chr2A 92.788 208 11 4 260 467 529408395 529408598 6.300000e-77 298.0
31 TraesCS1B01G287700 chr3D 93.137 204 11 1 1576 1776 474216232 474216029 2.270000e-76 296.0
32 TraesCS1B01G287700 chr3D 87.574 169 14 4 1591 1754 23195788 23195622 3.960000e-44 189.0
33 TraesCS1B01G287700 chr3D 81.868 182 23 8 1591 1770 23173712 23173539 8.690000e-31 145.0
34 TraesCS1B01G287700 chr3D 90.411 73 5 2 2937 3007 355892529 355892457 8.870000e-16 95.3
35 TraesCS1B01G287700 chr4D 86.498 237 17 8 2584 2812 503694703 503694474 2.320000e-61 246.0
36 TraesCS1B01G287700 chr4D 95.192 104 4 1 2841 2943 503678264 503678161 2.400000e-36 163.0
37 TraesCS1B01G287700 chr7B 95.082 61 3 0 2944 3004 354997466 354997406 2.470000e-16 97.1
38 TraesCS1B01G287700 chr6D 92.537 67 4 1 2942 3007 11323223 11323157 8.870000e-16 95.3
39 TraesCS1B01G287700 chr2D 90.411 73 6 1 2935 3007 96085431 96085360 8.870000e-16 95.3
40 TraesCS1B01G287700 chr5D 88.312 77 7 2 2932 3007 413571727 413571652 1.150000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G287700 chr1B 499894919 499897925 3006 False 5553.00 5553 100.0000 1 3007 1 chr1B.!!$F1 3006
1 TraesCS1B01G287700 chr1D 375645672 375647989 2317 True 1234.50 2217 88.4465 75 2593 2 chr1D.!!$R1 2518
2 TraesCS1B01G287700 chr1A 474449840 474451996 2156 True 432.06 1738 89.3884 42 2510 5 chr1A.!!$R1 2468
3 TraesCS1B01G287700 chr3A 616492401 616493167 766 True 422.00 422 77.3650 1001 1824 1 chr3A.!!$R4 823
4 TraesCS1B01G287700 chr3B 630401258 630402031 773 True 379.00 379 76.5680 1001 1824 1 chr3B.!!$R2 823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 659 0.033011 TCTGTCTCTCCCCCTAGCAC 60.033 60.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 2823 0.036765 AGTCAAAATAGACGGGCGCA 60.037 50.0 10.83 0.0 43.24 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.806342 AAAATGTGTCGCTCGTTTTAGT 57.194 36.364 8.86 0.00 33.88 2.24
31 32 4.806342 AAATGTGTCGCTCGTTTTAGTT 57.194 36.364 0.00 0.00 0.00 2.24
32 33 3.788434 ATGTGTCGCTCGTTTTAGTTG 57.212 42.857 0.00 0.00 0.00 3.16
33 34 2.811855 TGTGTCGCTCGTTTTAGTTGA 58.188 42.857 0.00 0.00 0.00 3.18
34 35 3.188492 TGTGTCGCTCGTTTTAGTTGAA 58.812 40.909 0.00 0.00 0.00 2.69
35 36 3.617706 TGTGTCGCTCGTTTTAGTTGAAA 59.382 39.130 0.00 0.00 0.00 2.69
36 37 4.093115 TGTGTCGCTCGTTTTAGTTGAAAA 59.907 37.500 0.00 0.00 34.56 2.29
60 61 1.062880 TGAAACGTTTTCTCACCGTGC 59.937 47.619 15.89 0.00 34.62 5.34
63 64 1.157870 ACGTTTTCTCACCGTGCCAG 61.158 55.000 0.00 0.00 32.86 4.85
68 69 2.270352 TTCTCACCGTGCCAGAAAAT 57.730 45.000 1.19 0.00 0.00 1.82
69 70 1.522668 TCTCACCGTGCCAGAAAATG 58.477 50.000 0.00 0.00 0.00 2.32
70 71 0.109597 CTCACCGTGCCAGAAAATGC 60.110 55.000 0.00 0.00 0.00 3.56
71 72 1.442520 CACCGTGCCAGAAAATGCG 60.443 57.895 0.00 0.00 0.00 4.73
72 73 1.599518 ACCGTGCCAGAAAATGCGA 60.600 52.632 0.00 0.00 0.00 5.10
73 74 1.169661 ACCGTGCCAGAAAATGCGAA 61.170 50.000 0.00 0.00 0.00 4.70
212 216 1.345856 GACGAGACGAGTCGAGCTC 59.654 63.158 21.50 21.64 42.85 4.09
213 217 2.027628 GACGAGACGAGTCGAGCTCC 62.028 65.000 21.50 9.52 42.85 4.70
214 218 2.101233 CGAGACGAGTCGAGCTCCA 61.101 63.158 21.50 0.00 42.85 3.86
215 219 1.719117 GAGACGAGTCGAGCTCCAG 59.281 63.158 21.50 0.00 41.10 3.86
216 220 2.101380 GACGAGTCGAGCTCCAGC 59.899 66.667 21.50 0.00 41.10 4.85
217 221 3.404141 GACGAGTCGAGCTCCAGCC 62.404 68.421 21.50 0.00 43.38 4.85
257 273 2.595386 CAAGCAACGGCCAATAAAGAC 58.405 47.619 2.24 0.00 42.56 3.01
258 274 1.904287 AGCAACGGCCAATAAAGACA 58.096 45.000 2.24 0.00 42.56 3.41
259 275 1.812571 AGCAACGGCCAATAAAGACAG 59.187 47.619 2.24 0.00 42.56 3.51
260 276 1.810151 GCAACGGCCAATAAAGACAGA 59.190 47.619 2.24 0.00 0.00 3.41
261 277 2.227865 GCAACGGCCAATAAAGACAGAA 59.772 45.455 2.24 0.00 0.00 3.02
262 278 3.305064 GCAACGGCCAATAAAGACAGAAA 60.305 43.478 2.24 0.00 0.00 2.52
263 279 4.794655 GCAACGGCCAATAAAGACAGAAAA 60.795 41.667 2.24 0.00 0.00 2.29
264 280 4.766404 ACGGCCAATAAAGACAGAAAAG 57.234 40.909 2.24 0.00 0.00 2.27
265 281 4.394729 ACGGCCAATAAAGACAGAAAAGA 58.605 39.130 2.24 0.00 0.00 2.52
266 282 4.825085 ACGGCCAATAAAGACAGAAAAGAA 59.175 37.500 2.24 0.00 0.00 2.52
267 283 5.476945 ACGGCCAATAAAGACAGAAAAGAAT 59.523 36.000 2.24 0.00 0.00 2.40
268 284 6.015434 ACGGCCAATAAAGACAGAAAAGAATT 60.015 34.615 2.24 0.00 0.00 2.17
269 285 6.528072 CGGCCAATAAAGACAGAAAAGAATTC 59.472 38.462 2.24 0.00 0.00 2.17
270 286 7.378181 GGCCAATAAAGACAGAAAAGAATTCA 58.622 34.615 8.44 0.00 0.00 2.57
271 287 7.872483 GGCCAATAAAGACAGAAAAGAATTCAA 59.128 33.333 8.44 0.00 0.00 2.69
272 288 9.428097 GCCAATAAAGACAGAAAAGAATTCAAT 57.572 29.630 8.44 0.00 0.00 2.57
278 294 7.446001 AGACAGAAAAGAATTCAATGAGACC 57.554 36.000 8.44 0.00 0.00 3.85
279 295 7.000472 AGACAGAAAAGAATTCAATGAGACCA 59.000 34.615 8.44 0.00 0.00 4.02
280 296 7.174599 AGACAGAAAAGAATTCAATGAGACCAG 59.825 37.037 8.44 0.00 0.00 4.00
281 297 6.208204 ACAGAAAAGAATTCAATGAGACCAGG 59.792 38.462 8.44 0.00 0.00 4.45
282 298 6.208204 CAGAAAAGAATTCAATGAGACCAGGT 59.792 38.462 8.44 0.00 0.00 4.00
283 299 6.432472 AGAAAAGAATTCAATGAGACCAGGTC 59.568 38.462 12.25 12.25 0.00 3.85
284 300 5.511386 AAGAATTCAATGAGACCAGGTCT 57.489 39.130 23.18 23.18 46.42 3.85
291 307 2.282251 AGACCAGGTCTCACGCGA 60.282 61.111 17.31 0.00 38.71 5.87
292 308 2.179517 GACCAGGTCTCACGCGAG 59.820 66.667 15.93 4.59 40.98 5.03
293 309 2.282251 ACCAGGTCTCACGCGAGA 60.282 61.111 15.93 10.37 46.28 4.04
300 316 2.099143 TCTCACGCGAGACTCATCC 58.901 57.895 15.93 0.00 43.55 3.51
301 317 0.393132 TCTCACGCGAGACTCATCCT 60.393 55.000 15.93 0.00 43.55 3.24
302 318 0.248417 CTCACGCGAGACTCATCCTG 60.248 60.000 15.93 0.00 42.34 3.86
303 319 0.676782 TCACGCGAGACTCATCCTGA 60.677 55.000 15.93 0.00 0.00 3.86
304 320 0.383590 CACGCGAGACTCATCCTGAT 59.616 55.000 15.93 0.00 0.00 2.90
305 321 0.383590 ACGCGAGACTCATCCTGATG 59.616 55.000 15.93 0.55 40.09 3.07
306 322 0.665298 CGCGAGACTCATCCTGATGA 59.335 55.000 0.00 9.35 44.83 2.92
307 323 1.066152 CGCGAGACTCATCCTGATGAA 59.934 52.381 0.00 0.00 46.10 2.57
308 324 2.288091 CGCGAGACTCATCCTGATGAAT 60.288 50.000 0.00 0.99 46.10 2.57
309 325 3.058450 GCGAGACTCATCCTGATGAATG 58.942 50.000 10.78 3.60 46.10 2.67
310 326 3.243670 GCGAGACTCATCCTGATGAATGA 60.244 47.826 10.78 0.00 46.10 2.57
311 327 4.297510 CGAGACTCATCCTGATGAATGAC 58.702 47.826 10.78 2.08 46.10 3.06
312 328 4.202090 CGAGACTCATCCTGATGAATGACA 60.202 45.833 10.78 0.00 46.10 3.58
313 329 5.021033 AGACTCATCCTGATGAATGACAC 57.979 43.478 10.78 0.92 46.10 3.67
314 330 3.790091 ACTCATCCTGATGAATGACACG 58.210 45.455 10.78 1.06 46.10 4.49
315 331 3.196469 ACTCATCCTGATGAATGACACGT 59.804 43.478 10.78 1.62 46.10 4.49
316 332 3.524541 TCATCCTGATGAATGACACGTG 58.475 45.455 15.48 15.48 44.14 4.49
317 333 2.385013 TCCTGATGAATGACACGTGG 57.615 50.000 21.57 1.66 0.00 4.94
318 334 0.729116 CCTGATGAATGACACGTGGC 59.271 55.000 21.57 19.24 0.00 5.01
319 335 1.441738 CTGATGAATGACACGTGGCA 58.558 50.000 29.28 29.28 37.54 4.92
320 336 1.129251 CTGATGAATGACACGTGGCAC 59.871 52.381 29.77 16.31 34.80 5.01
321 337 1.270785 TGATGAATGACACGTGGCACT 60.271 47.619 29.77 18.51 34.80 4.40
322 338 1.394917 GATGAATGACACGTGGCACTC 59.605 52.381 29.77 27.37 34.80 3.51
323 339 0.105778 TGAATGACACGTGGCACTCA 59.894 50.000 30.26 30.26 36.90 3.41
324 340 0.512952 GAATGACACGTGGCACTCAC 59.487 55.000 29.77 14.38 42.74 3.51
325 341 0.179059 AATGACACGTGGCACTCACA 60.179 50.000 29.77 1.73 46.36 3.58
326 342 0.179059 ATGACACGTGGCACTCACAA 60.179 50.000 29.77 0.79 46.36 3.33
327 343 0.391793 TGACACGTGGCACTCACAAA 60.392 50.000 23.03 0.00 46.36 2.83
328 344 0.944386 GACACGTGGCACTCACAAAT 59.056 50.000 18.77 0.00 46.36 2.32
329 345 0.944386 ACACGTGGCACTCACAAATC 59.056 50.000 21.57 0.00 46.36 2.17
330 346 0.943673 CACGTGGCACTCACAAATCA 59.056 50.000 16.72 0.00 46.36 2.57
331 347 0.944386 ACGTGGCACTCACAAATCAC 59.056 50.000 16.72 0.00 46.36 3.06
332 348 0.943673 CGTGGCACTCACAAATCACA 59.056 50.000 16.72 0.00 46.36 3.58
333 349 1.333308 CGTGGCACTCACAAATCACAA 59.667 47.619 16.72 0.00 46.36 3.33
334 350 2.223456 CGTGGCACTCACAAATCACAAA 60.223 45.455 16.72 0.00 46.36 2.83
335 351 3.374745 GTGGCACTCACAAATCACAAAG 58.625 45.455 11.13 0.00 45.39 2.77
336 352 2.223782 TGGCACTCACAAATCACAAAGC 60.224 45.455 0.00 0.00 0.00 3.51
337 353 2.223782 GGCACTCACAAATCACAAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
338 354 3.553508 GGCACTCACAAATCACAAAGCAT 60.554 43.478 0.00 0.00 0.00 3.79
339 355 3.671928 GCACTCACAAATCACAAAGCATC 59.328 43.478 0.00 0.00 0.00 3.91
340 356 4.232221 CACTCACAAATCACAAAGCATCC 58.768 43.478 0.00 0.00 0.00 3.51
341 357 4.022589 CACTCACAAATCACAAAGCATCCT 60.023 41.667 0.00 0.00 0.00 3.24
342 358 4.217118 ACTCACAAATCACAAAGCATCCTC 59.783 41.667 0.00 0.00 0.00 3.71
343 359 3.507233 TCACAAATCACAAAGCATCCTCC 59.493 43.478 0.00 0.00 0.00 4.30
344 360 3.256383 CACAAATCACAAAGCATCCTCCA 59.744 43.478 0.00 0.00 0.00 3.86
345 361 3.256631 ACAAATCACAAAGCATCCTCCAC 59.743 43.478 0.00 0.00 0.00 4.02
346 362 2.134789 ATCACAAAGCATCCTCCACC 57.865 50.000 0.00 0.00 0.00 4.61
347 363 0.038166 TCACAAAGCATCCTCCACCC 59.962 55.000 0.00 0.00 0.00 4.61
348 364 0.967380 CACAAAGCATCCTCCACCCC 60.967 60.000 0.00 0.00 0.00 4.95
349 365 1.380380 CAAAGCATCCTCCACCCCC 60.380 63.158 0.00 0.00 0.00 5.40
388 404 7.079451 GGGGGAGAGATTAGATGTTTTATGA 57.921 40.000 0.00 0.00 0.00 2.15
389 405 7.694093 GGGGGAGAGATTAGATGTTTTATGAT 58.306 38.462 0.00 0.00 0.00 2.45
390 406 8.166726 GGGGGAGAGATTAGATGTTTTATGATT 58.833 37.037 0.00 0.00 0.00 2.57
391 407 9.579932 GGGGAGAGATTAGATGTTTTATGATTT 57.420 33.333 0.00 0.00 0.00 2.17
400 416 9.585099 TTAGATGTTTTATGATTTGTGAATGCC 57.415 29.630 0.00 0.00 0.00 4.40
401 417 7.613585 AGATGTTTTATGATTTGTGAATGCCA 58.386 30.769 0.00 0.00 0.00 4.92
402 418 7.546667 AGATGTTTTATGATTTGTGAATGCCAC 59.453 33.333 0.00 0.00 45.88 5.01
410 426 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
411 427 1.442769 GTGAATGCCACGTGTCATCT 58.557 50.000 13.12 3.38 35.86 2.90
412 428 2.616960 GTGAATGCCACGTGTCATCTA 58.383 47.619 13.12 2.12 35.86 1.98
413 429 3.198068 GTGAATGCCACGTGTCATCTAT 58.802 45.455 13.12 0.00 35.86 1.98
414 430 3.246226 GTGAATGCCACGTGTCATCTATC 59.754 47.826 13.12 7.62 35.86 2.08
415 431 3.118811 TGAATGCCACGTGTCATCTATCA 60.119 43.478 13.12 10.21 0.00 2.15
416 432 2.584492 TGCCACGTGTCATCTATCAG 57.416 50.000 15.65 0.00 0.00 2.90
417 433 1.136891 TGCCACGTGTCATCTATCAGG 59.863 52.381 15.65 0.00 0.00 3.86
418 434 1.409064 GCCACGTGTCATCTATCAGGA 59.591 52.381 15.65 0.00 0.00 3.86
419 435 2.799917 GCCACGTGTCATCTATCAGGAC 60.800 54.545 15.65 0.00 0.00 3.85
420 436 2.541794 CCACGTGTCATCTATCAGGACG 60.542 54.545 15.65 0.00 34.32 4.79
421 437 1.676529 ACGTGTCATCTATCAGGACGG 59.323 52.381 0.00 0.00 34.32 4.79
422 438 1.001268 CGTGTCATCTATCAGGACGGG 60.001 57.143 0.00 0.00 34.32 5.28
423 439 2.032620 GTGTCATCTATCAGGACGGGT 58.967 52.381 0.00 0.00 34.32 5.28
424 440 2.034812 GTGTCATCTATCAGGACGGGTC 59.965 54.545 0.00 0.00 34.32 4.46
425 441 2.091830 TGTCATCTATCAGGACGGGTCT 60.092 50.000 0.00 0.00 34.32 3.85
426 442 2.554893 GTCATCTATCAGGACGGGTCTC 59.445 54.545 0.00 0.00 0.00 3.36
427 443 2.174854 TCATCTATCAGGACGGGTCTCA 59.825 50.000 0.00 0.00 0.00 3.27
428 444 2.054232 TCTATCAGGACGGGTCTCAC 57.946 55.000 0.00 0.00 0.00 3.51
429 445 1.033574 CTATCAGGACGGGTCTCACC 58.966 60.000 0.00 0.00 37.60 4.02
430 446 0.629596 TATCAGGACGGGTCTCACCT 59.370 55.000 0.00 0.00 38.64 4.00
436 452 4.913126 CGGGTCTCACCTGCTAAC 57.087 61.111 0.00 0.00 37.90 2.34
437 453 1.218316 CGGGTCTCACCTGCTAACC 59.782 63.158 0.00 0.00 37.90 2.85
438 454 1.218316 GGGTCTCACCTGCTAACCG 59.782 63.158 0.00 0.00 38.64 4.44
439 455 1.542187 GGGTCTCACCTGCTAACCGT 61.542 60.000 0.00 0.00 38.64 4.83
440 456 1.180029 GGTCTCACCTGCTAACCGTA 58.820 55.000 0.00 0.00 34.73 4.02
441 457 1.547372 GGTCTCACCTGCTAACCGTAA 59.453 52.381 0.00 0.00 34.73 3.18
442 458 2.416972 GGTCTCACCTGCTAACCGTAAG 60.417 54.545 0.00 0.00 34.73 2.34
443 459 2.490903 GTCTCACCTGCTAACCGTAAGA 59.509 50.000 0.00 0.00 43.02 2.10
444 460 2.490903 TCTCACCTGCTAACCGTAAGAC 59.509 50.000 0.00 0.00 43.02 3.01
445 461 1.547372 TCACCTGCTAACCGTAAGACC 59.453 52.381 0.00 0.00 43.02 3.85
446 462 1.549170 CACCTGCTAACCGTAAGACCT 59.451 52.381 0.00 0.00 43.02 3.85
447 463 1.549170 ACCTGCTAACCGTAAGACCTG 59.451 52.381 0.00 0.00 43.02 4.00
448 464 1.134788 CCTGCTAACCGTAAGACCTGG 60.135 57.143 0.00 0.00 43.02 4.45
449 465 1.549170 CTGCTAACCGTAAGACCTGGT 59.451 52.381 0.00 0.00 43.02 4.00
450 466 1.547372 TGCTAACCGTAAGACCTGGTC 59.453 52.381 19.20 19.20 43.02 4.02
451 467 1.823610 GCTAACCGTAAGACCTGGTCT 59.176 52.381 23.49 23.49 45.64 3.85
452 468 2.159268 GCTAACCGTAAGACCTGGTCTC 60.159 54.545 28.46 16.42 42.59 3.36
453 469 2.005370 AACCGTAAGACCTGGTCTCA 57.995 50.000 28.46 13.27 42.59 3.27
454 470 2.233305 ACCGTAAGACCTGGTCTCAT 57.767 50.000 28.46 17.00 42.59 2.90
455 471 3.377253 ACCGTAAGACCTGGTCTCATA 57.623 47.619 28.46 15.96 42.59 2.15
456 472 3.912248 ACCGTAAGACCTGGTCTCATAT 58.088 45.455 28.46 15.93 42.59 1.78
457 473 5.057843 ACCGTAAGACCTGGTCTCATATA 57.942 43.478 28.46 14.91 42.59 0.86
458 474 5.452255 ACCGTAAGACCTGGTCTCATATAA 58.548 41.667 28.46 8.51 42.59 0.98
459 475 6.075984 ACCGTAAGACCTGGTCTCATATAAT 58.924 40.000 28.46 14.16 42.59 1.28
460 476 6.553852 ACCGTAAGACCTGGTCTCATATAATT 59.446 38.462 28.46 13.45 42.59 1.40
461 477 7.070821 ACCGTAAGACCTGGTCTCATATAATTT 59.929 37.037 28.46 12.75 42.59 1.82
462 478 7.931948 CCGTAAGACCTGGTCTCATATAATTTT 59.068 37.037 28.46 12.05 42.59 1.82
463 479 9.326413 CGTAAGACCTGGTCTCATATAATTTTT 57.674 33.333 28.46 11.55 42.59 1.94
551 576 1.229209 GGACTGGTCCTCCCTCACA 60.229 63.158 12.09 0.00 46.16 3.58
618 655 1.950748 GCCCTCTGTCTCTCCCCCTA 61.951 65.000 0.00 0.00 0.00 3.53
619 656 0.187361 CCCTCTGTCTCTCCCCCTAG 59.813 65.000 0.00 0.00 0.00 3.02
621 658 0.260230 CTCTGTCTCTCCCCCTAGCA 59.740 60.000 0.00 0.00 0.00 3.49
622 659 0.033011 TCTGTCTCTCCCCCTAGCAC 60.033 60.000 0.00 0.00 0.00 4.40
623 660 1.379977 TGTCTCTCCCCCTAGCACG 60.380 63.158 0.00 0.00 0.00 5.34
624 661 2.442272 TCTCTCCCCCTAGCACGC 60.442 66.667 0.00 0.00 0.00 5.34
630 667 3.905678 CCCCTAGCACGCGGAGAG 61.906 72.222 12.47 1.43 0.00 3.20
631 668 3.905678 CCCTAGCACGCGGAGAGG 61.906 72.222 12.47 11.30 0.00 3.69
669 723 3.597728 GCGACTAGGCGAGGGAGG 61.598 72.222 25.39 0.00 0.00 4.30
670 724 2.124236 CGACTAGGCGAGGGAGGT 60.124 66.667 14.40 0.00 0.00 3.85
671 725 2.482333 CGACTAGGCGAGGGAGGTG 61.482 68.421 14.40 0.00 0.00 4.00
672 726 2.042843 ACTAGGCGAGGGAGGTGG 60.043 66.667 0.00 0.00 0.00 4.61
673 727 2.840102 CTAGGCGAGGGAGGTGGG 60.840 72.222 0.00 0.00 0.00 4.61
674 728 4.475444 TAGGCGAGGGAGGTGGGG 62.475 72.222 0.00 0.00 0.00 4.96
678 732 2.844839 CGAGGGAGGTGGGGGATC 60.845 72.222 0.00 0.00 0.00 3.36
781 835 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
830 884 2.593956 GCCTCCCTCGACCCACTTT 61.594 63.158 0.00 0.00 0.00 2.66
907 970 3.086600 CTGCCACTCCCCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
923 986 2.904866 CCTCTCCTCTCCTCCGCG 60.905 72.222 0.00 0.00 0.00 6.46
939 1002 3.217743 CGCCCCGACTACTCCCTC 61.218 72.222 0.00 0.00 0.00 4.30
940 1003 2.279408 GCCCCGACTACTCCCTCT 59.721 66.667 0.00 0.00 0.00 3.69
941 1004 1.829096 GCCCCGACTACTCCCTCTC 60.829 68.421 0.00 0.00 0.00 3.20
942 1005 1.924352 CCCCGACTACTCCCTCTCT 59.076 63.158 0.00 0.00 0.00 3.10
943 1006 0.259356 CCCCGACTACTCCCTCTCTT 59.741 60.000 0.00 0.00 0.00 2.85
944 1007 1.682740 CCCGACTACTCCCTCTCTTC 58.317 60.000 0.00 0.00 0.00 2.87
945 1008 1.682740 CCGACTACTCCCTCTCTTCC 58.317 60.000 0.00 0.00 0.00 3.46
946 1009 1.301423 CGACTACTCCCTCTCTTCCG 58.699 60.000 0.00 0.00 0.00 4.30
947 1010 1.407162 CGACTACTCCCTCTCTTCCGT 60.407 57.143 0.00 0.00 0.00 4.69
949 1012 1.341187 ACTACTCCCTCTCTTCCGTGG 60.341 57.143 0.00 0.00 0.00 4.94
966 1029 1.081175 GGCTTTGCCTGAGAAACGC 60.081 57.895 0.73 0.00 46.69 4.84
970 1033 2.951475 TTTGCCTGAGAAACGCGGGT 62.951 55.000 12.47 0.00 32.22 5.28
1143 1245 0.947244 CGGCAGAGAACAAGCTGTTT 59.053 50.000 0.00 0.00 41.28 2.83
1501 1616 1.062352 AGTAAGCCCCTCCCGATTACT 60.062 52.381 0.00 0.00 33.09 2.24
1515 1630 4.258543 CCGATTACTTAACCCACACATGT 58.741 43.478 0.00 0.00 0.00 3.21
1520 1635 1.735571 CTTAACCCACACATGTACGGC 59.264 52.381 0.00 0.00 0.00 5.68
1539 1672 0.163788 CTTCAAATCTCGTTGCGCGT 59.836 50.000 8.43 0.00 42.13 6.01
1544 1677 3.891586 ATCTCGTTGCGCGTGTCGT 62.892 57.895 8.43 0.00 42.13 4.34
1552 1685 2.803670 CGCGTGTCGTTGATCGGT 60.804 61.111 0.00 0.00 40.32 4.69
1563 1696 0.245539 TTGATCGGTGGGACGAACTC 59.754 55.000 0.00 0.00 46.92 3.01
1565 1698 1.305046 ATCGGTGGGACGAACTCCT 60.305 57.895 0.00 0.00 46.92 3.69
1574 1707 0.878961 GACGAACTCCTGTTTGCCGT 60.879 55.000 0.00 0.00 40.37 5.68
1646 1779 2.429571 TCGCGCAACTACGTGACC 60.430 61.111 8.75 0.00 46.67 4.02
1925 2070 0.530744 ATCTCTACGGCAGCGTGAAA 59.469 50.000 0.00 0.00 0.00 2.69
2011 2159 2.435059 GCCTCTCGGTTGACCAGC 60.435 66.667 0.51 0.00 35.14 4.85
2064 2212 1.807573 GGAGAAAGCTGCCTCGTCG 60.808 63.158 0.00 0.00 0.00 5.12
2171 2344 3.827898 CGGACGGAGAGGGAGCAC 61.828 72.222 0.00 0.00 0.00 4.40
2191 2364 0.105593 GAGATGAGGATGAGCGGCAA 59.894 55.000 1.45 0.00 0.00 4.52
2206 2379 1.455217 GCAAGGCAGCAGGATGGAT 60.455 57.895 0.00 0.00 35.86 3.41
2232 2418 5.560148 GGCATTTCTTCTGTGTACATAACG 58.440 41.667 0.00 0.00 0.00 3.18
2286 2472 6.576662 TCCTCTCTATTATTTGCTAGGACG 57.423 41.667 0.00 0.00 0.00 4.79
2287 2473 6.069331 TCCTCTCTATTATTTGCTAGGACGT 58.931 40.000 0.00 0.00 0.00 4.34
2288 2474 6.207025 TCCTCTCTATTATTTGCTAGGACGTC 59.793 42.308 7.13 7.13 0.00 4.34
2289 2475 6.328641 TCTCTATTATTTGCTAGGACGTCC 57.671 41.667 27.67 27.67 0.00 4.79
2320 2506 4.147449 CGAGCCATGGGAGACGCA 62.147 66.667 15.13 0.00 0.00 5.24
2321 2507 2.512515 GAGCCATGGGAGACGCAC 60.513 66.667 15.13 0.00 0.00 5.34
2322 2508 3.005539 AGCCATGGGAGACGCACT 61.006 61.111 15.13 0.00 0.00 4.40
2323 2509 2.821366 GCCATGGGAGACGCACTG 60.821 66.667 15.13 0.00 0.00 3.66
2324 2510 2.124983 CCATGGGAGACGCACTGG 60.125 66.667 2.85 0.00 0.00 4.00
2325 2511 2.124983 CATGGGAGACGCACTGGG 60.125 66.667 0.00 0.00 0.00 4.45
2326 2512 2.284625 ATGGGAGACGCACTGGGA 60.285 61.111 0.00 0.00 0.00 4.37
2327 2513 2.362369 ATGGGAGACGCACTGGGAG 61.362 63.158 0.00 0.00 0.00 4.30
2328 2514 4.459089 GGGAGACGCACTGGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
2336 2522 1.072159 GCACTGGGAGCACTTGAGT 59.928 57.895 0.00 0.00 0.00 3.41
2399 2585 1.369091 CGCTGTGATTACACCTGCCC 61.369 60.000 0.00 0.00 45.40 5.36
2401 2587 0.249120 CTGTGATTACACCTGCCCGA 59.751 55.000 0.00 0.00 45.40 5.14
2402 2588 0.249120 TGTGATTACACCTGCCCGAG 59.751 55.000 0.00 0.00 45.40 4.63
2477 2674 4.881273 GTCATGCATGTGGTAGTATTTGGA 59.119 41.667 25.43 0.00 0.00 3.53
2478 2675 4.881273 TCATGCATGTGGTAGTATTTGGAC 59.119 41.667 25.43 0.00 0.00 4.02
2517 2714 3.976015 TGGTGTTCTTCTTTTCCCTTGT 58.024 40.909 0.00 0.00 0.00 3.16
2538 2735 6.424176 TGTTGTAACGTGTTGATCTTTTGA 57.576 33.333 0.00 0.00 0.00 2.69
2542 2739 7.906611 TGTAACGTGTTGATCTTTTGATTTG 57.093 32.000 0.00 0.00 39.67 2.32
2545 2742 4.236935 CGTGTTGATCTTTTGATTTGGGG 58.763 43.478 0.00 0.00 39.67 4.96
2558 2763 3.640967 TGATTTGGGGGTATTAGCATTGC 59.359 43.478 0.00 0.00 0.00 3.56
2588 2793 6.351711 CCTCTCATTGACCCCTGCTATATTAG 60.352 46.154 0.00 0.00 0.00 1.73
2593 2798 8.154856 TCATTGACCCCTGCTATATTAGTTAAC 58.845 37.037 0.00 0.00 0.00 2.01
2594 2799 7.685849 TTGACCCCTGCTATATTAGTTAACT 57.314 36.000 13.68 13.68 0.00 2.24
2595 2800 8.786710 TTGACCCCTGCTATATTAGTTAACTA 57.213 34.615 11.38 11.38 0.00 2.24
2596 2801 8.418597 TGACCCCTGCTATATTAGTTAACTAG 57.581 38.462 14.73 6.69 0.00 2.57
2597 2802 8.229605 TGACCCCTGCTATATTAGTTAACTAGA 58.770 37.037 14.73 8.32 0.00 2.43
2598 2803 9.257428 GACCCCTGCTATATTAGTTAACTAGAT 57.743 37.037 14.73 14.08 0.00 1.98
2599 2804 9.257428 ACCCCTGCTATATTAGTTAACTAGATC 57.743 37.037 14.73 4.19 0.00 2.75
2600 2805 9.256228 CCCCTGCTATATTAGTTAACTAGATCA 57.744 37.037 14.73 1.57 0.00 2.92
2609 2814 7.946655 TTAGTTAACTAGATCATTGATGGCG 57.053 36.000 14.73 0.00 0.00 5.69
2610 2815 4.752101 AGTTAACTAGATCATTGATGGCGC 59.248 41.667 6.26 0.00 0.00 6.53
2611 2816 1.788258 ACTAGATCATTGATGGCGCG 58.212 50.000 0.00 0.00 0.00 6.86
2612 2817 0.441533 CTAGATCATTGATGGCGCGC 59.558 55.000 25.94 25.94 0.00 6.86
2613 2818 0.249826 TAGATCATTGATGGCGCGCA 60.250 50.000 34.42 19.50 0.00 6.09
2614 2819 1.369689 GATCATTGATGGCGCGCAC 60.370 57.895 34.42 22.27 0.00 5.34
2615 2820 1.779025 GATCATTGATGGCGCGCACT 61.779 55.000 34.42 19.60 0.00 4.40
2616 2821 2.055310 ATCATTGATGGCGCGCACTG 62.055 55.000 34.42 16.41 0.00 3.66
2617 2822 4.183686 ATTGATGGCGCGCACTGC 62.184 61.111 34.42 18.70 41.47 4.40
2629 2834 4.435436 CACTGCTGCGCCCGTCTA 62.435 66.667 4.18 0.00 0.00 2.59
2630 2835 3.461773 ACTGCTGCGCCCGTCTAT 61.462 61.111 4.18 0.00 0.00 1.98
2631 2836 2.202932 CTGCTGCGCCCGTCTATT 60.203 61.111 4.18 0.00 0.00 1.73
2632 2837 1.815421 CTGCTGCGCCCGTCTATTT 60.815 57.895 4.18 0.00 0.00 1.40
2633 2838 1.369091 CTGCTGCGCCCGTCTATTTT 61.369 55.000 4.18 0.00 0.00 1.82
2634 2839 1.062525 GCTGCGCCCGTCTATTTTG 59.937 57.895 4.18 0.00 0.00 2.44
2635 2840 1.366111 GCTGCGCCCGTCTATTTTGA 61.366 55.000 4.18 0.00 0.00 2.69
2636 2841 0.373716 CTGCGCCCGTCTATTTTGAC 59.626 55.000 4.18 0.00 0.00 3.18
2637 2842 0.036765 TGCGCCCGTCTATTTTGACT 60.037 50.000 4.18 0.00 35.00 3.41
2638 2843 1.084289 GCGCCCGTCTATTTTGACTT 58.916 50.000 0.00 0.00 35.00 3.01
2639 2844 2.273557 GCGCCCGTCTATTTTGACTTA 58.726 47.619 0.00 0.00 35.00 2.24
2640 2845 2.870411 GCGCCCGTCTATTTTGACTTAT 59.130 45.455 0.00 0.00 35.00 1.73
2641 2846 4.053295 GCGCCCGTCTATTTTGACTTATA 58.947 43.478 0.00 0.00 35.00 0.98
2642 2847 4.689345 GCGCCCGTCTATTTTGACTTATAT 59.311 41.667 0.00 0.00 35.00 0.86
2643 2848 5.178809 GCGCCCGTCTATTTTGACTTATATT 59.821 40.000 0.00 0.00 35.00 1.28
2644 2849 6.293244 GCGCCCGTCTATTTTGACTTATATTT 60.293 38.462 0.00 0.00 35.00 1.40
2645 2850 7.069569 CGCCCGTCTATTTTGACTTATATTTG 58.930 38.462 0.00 0.00 35.00 2.32
2646 2851 6.856426 GCCCGTCTATTTTGACTTATATTTGC 59.144 38.462 0.00 0.00 35.00 3.68
2647 2852 7.255139 GCCCGTCTATTTTGACTTATATTTGCT 60.255 37.037 0.00 0.00 35.00 3.91
2648 2853 9.268268 CCCGTCTATTTTGACTTATATTTGCTA 57.732 33.333 0.00 0.00 35.00 3.49
2676 2881 9.880157 ACTACGAAGTAATTGGTATACATTTGT 57.120 29.630 5.01 1.19 45.13 2.83
2679 2884 9.834628 ACGAAGTAATTGGTATACATTTGTTTG 57.165 29.630 5.01 1.88 41.94 2.93
2695 2900 9.651913 ACATTTGTTTGAAGTATTGTGTTTTCT 57.348 25.926 0.00 0.00 0.00 2.52
2698 2903 9.921637 TTTGTTTGAAGTATTGTGTTTTCTTCT 57.078 25.926 0.00 0.00 36.49 2.85
2699 2904 8.909708 TGTTTGAAGTATTGTGTTTTCTTCTG 57.090 30.769 0.00 0.00 36.49 3.02
2700 2905 7.973388 TGTTTGAAGTATTGTGTTTTCTTCTGG 59.027 33.333 0.00 0.00 36.49 3.86
2701 2906 6.072112 TGAAGTATTGTGTTTTCTTCTGGC 57.928 37.500 0.00 0.00 36.49 4.85
2702 2907 5.827797 TGAAGTATTGTGTTTTCTTCTGGCT 59.172 36.000 0.00 0.00 36.49 4.75
2703 2908 6.321181 TGAAGTATTGTGTTTTCTTCTGGCTT 59.679 34.615 0.00 0.00 36.49 4.35
2704 2909 6.715347 AGTATTGTGTTTTCTTCTGGCTTT 57.285 33.333 0.00 0.00 0.00 3.51
2705 2910 7.112452 AGTATTGTGTTTTCTTCTGGCTTTT 57.888 32.000 0.00 0.00 0.00 2.27
2706 2911 6.980397 AGTATTGTGTTTTCTTCTGGCTTTTG 59.020 34.615 0.00 0.00 0.00 2.44
2707 2912 4.122143 TGTGTTTTCTTCTGGCTTTTGG 57.878 40.909 0.00 0.00 0.00 3.28
2708 2913 3.513515 TGTGTTTTCTTCTGGCTTTTGGT 59.486 39.130 0.00 0.00 0.00 3.67
2709 2914 4.020662 TGTGTTTTCTTCTGGCTTTTGGTT 60.021 37.500 0.00 0.00 0.00 3.67
2710 2915 5.186021 TGTGTTTTCTTCTGGCTTTTGGTTA 59.814 36.000 0.00 0.00 0.00 2.85
2711 2916 6.127196 TGTGTTTTCTTCTGGCTTTTGGTTAT 60.127 34.615 0.00 0.00 0.00 1.89
2712 2917 6.761242 GTGTTTTCTTCTGGCTTTTGGTTATT 59.239 34.615 0.00 0.00 0.00 1.40
2713 2918 7.279981 GTGTTTTCTTCTGGCTTTTGGTTATTT 59.720 33.333 0.00 0.00 0.00 1.40
2714 2919 7.494298 TGTTTTCTTCTGGCTTTTGGTTATTTC 59.506 33.333 0.00 0.00 0.00 2.17
2715 2920 5.722021 TCTTCTGGCTTTTGGTTATTTCC 57.278 39.130 0.00 0.00 0.00 3.13
2716 2921 5.393866 TCTTCTGGCTTTTGGTTATTTCCT 58.606 37.500 0.00 0.00 0.00 3.36
2717 2922 5.476945 TCTTCTGGCTTTTGGTTATTTCCTC 59.523 40.000 0.00 0.00 0.00 3.71
2718 2923 4.086457 TCTGGCTTTTGGTTATTTCCTCC 58.914 43.478 0.00 0.00 0.00 4.30
2719 2924 2.823154 TGGCTTTTGGTTATTTCCTCCG 59.177 45.455 0.00 0.00 0.00 4.63
2720 2925 2.165641 GGCTTTTGGTTATTTCCTCCGG 59.834 50.000 0.00 0.00 0.00 5.14
2721 2926 2.416836 GCTTTTGGTTATTTCCTCCGGC 60.417 50.000 0.00 0.00 0.00 6.13
2722 2927 2.588464 TTTGGTTATTTCCTCCGGCA 57.412 45.000 0.00 0.00 0.00 5.69
2723 2928 2.588464 TTGGTTATTTCCTCCGGCAA 57.412 45.000 0.00 0.00 0.00 4.52
2724 2929 1.828979 TGGTTATTTCCTCCGGCAAC 58.171 50.000 0.00 0.00 0.00 4.17
2725 2930 1.100510 GGTTATTTCCTCCGGCAACC 58.899 55.000 0.00 0.00 0.00 3.77
2726 2931 1.340697 GGTTATTTCCTCCGGCAACCT 60.341 52.381 0.00 0.00 34.05 3.50
2727 2932 1.743394 GTTATTTCCTCCGGCAACCTG 59.257 52.381 0.00 0.00 0.00 4.00
2728 2933 0.254747 TATTTCCTCCGGCAACCTGG 59.745 55.000 0.00 0.00 0.00 4.45
2729 2934 1.497309 ATTTCCTCCGGCAACCTGGA 61.497 55.000 0.00 0.00 0.00 3.86
2732 2937 2.750350 CTCCGGCAACCTGGAGTT 59.250 61.111 0.00 0.00 45.48 3.01
2733 2938 1.980052 CTCCGGCAACCTGGAGTTA 59.020 57.895 0.00 0.00 45.48 2.24
2734 2939 0.541863 CTCCGGCAACCTGGAGTTAT 59.458 55.000 0.00 0.00 45.48 1.89
2735 2940 0.251916 TCCGGCAACCTGGAGTTATG 59.748 55.000 0.00 0.00 36.18 1.90
2736 2941 0.251916 CCGGCAACCTGGAGTTATGA 59.748 55.000 0.00 0.00 36.18 2.15
2737 2942 1.339631 CCGGCAACCTGGAGTTATGAA 60.340 52.381 0.00 0.00 36.18 2.57
2738 2943 2.432444 CGGCAACCTGGAGTTATGAAA 58.568 47.619 0.00 0.00 36.18 2.69
2739 2944 2.817258 CGGCAACCTGGAGTTATGAAAA 59.183 45.455 0.00 0.00 36.18 2.29
2740 2945 3.254657 CGGCAACCTGGAGTTATGAAAAA 59.745 43.478 0.00 0.00 36.18 1.94
2761 2966 6.957920 AAAATGCCAAAATTTTACAAGGCT 57.042 29.167 23.10 11.41 42.46 4.58
2762 2967 6.957920 AAATGCCAAAATTTTACAAGGCTT 57.042 29.167 23.10 17.07 42.46 4.35
2763 2968 6.957920 AATGCCAAAATTTTACAAGGCTTT 57.042 29.167 23.10 20.47 42.46 3.51
2764 2969 5.747951 TGCCAAAATTTTACAAGGCTTTG 57.252 34.783 23.10 7.07 42.46 2.77
2766 2971 5.065731 TGCCAAAATTTTACAAGGCTTTGTG 59.934 36.000 23.17 5.13 46.63 3.33
2767 2972 5.295540 GCCAAAATTTTACAAGGCTTTGTGA 59.704 36.000 23.17 13.20 46.63 3.58
2768 2973 6.183360 GCCAAAATTTTACAAGGCTTTGTGAA 60.183 34.615 23.17 18.37 46.63 3.18
2769 2974 7.468494 GCCAAAATTTTACAAGGCTTTGTGAAT 60.468 33.333 23.17 18.36 46.63 2.57
2770 2975 8.404765 CCAAAATTTTACAAGGCTTTGTGAATT 58.595 29.630 23.17 22.10 46.63 2.17
2771 2976 9.786105 CAAAATTTTACAAGGCTTTGTGAATTT 57.214 25.926 26.59 26.59 46.63 1.82
2775 2980 8.426881 TTTTACAAGGCTTTGTGAATTTAACC 57.573 30.769 23.17 0.00 46.63 2.85
2776 2981 5.869649 ACAAGGCTTTGTGAATTTAACCT 57.130 34.783 14.09 0.00 45.54 3.50
2777 2982 6.233905 ACAAGGCTTTGTGAATTTAACCTT 57.766 33.333 14.09 0.00 45.54 3.50
2778 2983 6.649155 ACAAGGCTTTGTGAATTTAACCTTT 58.351 32.000 14.09 0.00 45.54 3.11
2779 2984 7.787028 ACAAGGCTTTGTGAATTTAACCTTTA 58.213 30.769 14.09 0.00 45.54 1.85
2780 2985 7.926018 ACAAGGCTTTGTGAATTTAACCTTTAG 59.074 33.333 14.09 0.00 45.54 1.85
2781 2986 7.597288 AGGCTTTGTGAATTTAACCTTTAGT 57.403 32.000 0.00 0.00 0.00 2.24
2782 2987 8.018537 AGGCTTTGTGAATTTAACCTTTAGTT 57.981 30.769 0.00 0.00 42.83 2.24
2783 2988 8.482943 AGGCTTTGTGAATTTAACCTTTAGTTT 58.517 29.630 0.00 0.00 40.05 2.66
2784 2989 9.104965 GGCTTTGTGAATTTAACCTTTAGTTTT 57.895 29.630 0.00 0.00 40.05 2.43
2839 3044 9.103861 TGAATTTCTGATATTAATACACGTGCA 57.896 29.630 17.22 2.06 0.00 4.57
2840 3045 9.370126 GAATTTCTGATATTAATACACGTGCAC 57.630 33.333 17.22 6.82 0.00 4.57
2841 3046 6.505039 TTCTGATATTAATACACGTGCACG 57.495 37.500 35.99 35.99 46.33 5.34
2842 3047 5.823353 TCTGATATTAATACACGTGCACGA 58.177 37.500 42.94 23.56 43.02 4.35
2843 3048 6.443792 TCTGATATTAATACACGTGCACGAT 58.556 36.000 42.94 30.81 43.02 3.73
2844 3049 6.581166 TCTGATATTAATACACGTGCACGATC 59.419 38.462 42.94 29.28 43.02 3.69
2845 3050 5.341196 TGATATTAATACACGTGCACGATCG 59.659 40.000 42.94 30.34 43.02 3.69
2846 3051 1.830086 TAATACACGTGCACGATCGG 58.170 50.000 42.94 28.66 43.02 4.18
2847 3052 1.418342 AATACACGTGCACGATCGGC 61.418 55.000 42.94 19.29 43.02 5.54
2848 3053 2.551097 ATACACGTGCACGATCGGCA 62.551 55.000 42.94 22.05 43.02 5.69
2871 3076 3.391049 GGCACTTATACCGAATGACTCC 58.609 50.000 0.00 0.00 0.00 3.85
2872 3077 3.181469 GGCACTTATACCGAATGACTCCA 60.181 47.826 0.00 0.00 0.00 3.86
2873 3078 4.051922 GCACTTATACCGAATGACTCCAG 58.948 47.826 0.00 0.00 0.00 3.86
2874 3079 4.441634 GCACTTATACCGAATGACTCCAGT 60.442 45.833 0.00 0.00 0.00 4.00
2875 3080 5.221185 GCACTTATACCGAATGACTCCAGTA 60.221 44.000 0.00 0.00 0.00 2.74
2876 3081 6.516860 GCACTTATACCGAATGACTCCAGTAT 60.517 42.308 0.00 0.00 0.00 2.12
2877 3082 7.434492 CACTTATACCGAATGACTCCAGTATT 58.566 38.462 0.00 0.00 0.00 1.89
2878 3083 7.926555 CACTTATACCGAATGACTCCAGTATTT 59.073 37.037 0.00 0.00 0.00 1.40
2879 3084 8.142551 ACTTATACCGAATGACTCCAGTATTTC 58.857 37.037 0.00 0.00 0.00 2.17
2880 3085 4.138487 ACCGAATGACTCCAGTATTTCC 57.862 45.455 0.00 0.00 0.00 3.13
2881 3086 3.517901 ACCGAATGACTCCAGTATTTCCA 59.482 43.478 0.00 0.00 0.00 3.53
2882 3087 4.164221 ACCGAATGACTCCAGTATTTCCAT 59.836 41.667 0.00 0.00 0.00 3.41
2883 3088 4.752101 CCGAATGACTCCAGTATTTCCATC 59.248 45.833 0.00 0.00 0.00 3.51
2884 3089 5.359756 CGAATGACTCCAGTATTTCCATCA 58.640 41.667 0.00 0.00 0.00 3.07
2885 3090 5.817296 CGAATGACTCCAGTATTTCCATCAA 59.183 40.000 0.00 0.00 0.00 2.57
2886 3091 6.484643 CGAATGACTCCAGTATTTCCATCAAT 59.515 38.462 0.00 0.00 0.00 2.57
2887 3092 7.657354 CGAATGACTCCAGTATTTCCATCAATA 59.343 37.037 0.00 0.00 0.00 1.90
2888 3093 9.342308 GAATGACTCCAGTATTTCCATCAATAA 57.658 33.333 0.00 0.00 0.00 1.40
2889 3094 9.872684 AATGACTCCAGTATTTCCATCAATAAT 57.127 29.630 0.00 0.00 0.00 1.28
2890 3095 8.681486 TGACTCCAGTATTTCCATCAATAATG 57.319 34.615 0.00 0.00 35.43 1.90
2891 3096 7.229306 TGACTCCAGTATTTCCATCAATAATGC 59.771 37.037 0.00 0.00 34.69 3.56
2892 3097 6.491403 ACTCCAGTATTTCCATCAATAATGCC 59.509 38.462 0.00 0.00 34.69 4.40
2893 3098 6.372104 TCCAGTATTTCCATCAATAATGCCA 58.628 36.000 0.00 0.00 34.69 4.92
2894 3099 6.265196 TCCAGTATTTCCATCAATAATGCCAC 59.735 38.462 0.00 0.00 34.69 5.01
2895 3100 6.266103 CCAGTATTTCCATCAATAATGCCACT 59.734 38.462 0.00 0.00 34.69 4.00
2896 3101 7.201938 CCAGTATTTCCATCAATAATGCCACTT 60.202 37.037 0.00 0.00 34.69 3.16
2897 3102 7.650504 CAGTATTTCCATCAATAATGCCACTTG 59.349 37.037 0.00 0.00 30.39 3.16
2898 3103 5.999205 TTTCCATCAATAATGCCACTTGT 57.001 34.783 0.00 0.00 33.71 3.16
2899 3104 5.581126 TTCCATCAATAATGCCACTTGTC 57.419 39.130 0.00 0.00 33.71 3.18
2900 3105 4.598022 TCCATCAATAATGCCACTTGTCA 58.402 39.130 0.00 0.00 33.71 3.58
2901 3106 5.202765 TCCATCAATAATGCCACTTGTCAT 58.797 37.500 0.00 0.00 33.71 3.06
2902 3107 5.657745 TCCATCAATAATGCCACTTGTCATT 59.342 36.000 0.00 0.00 36.87 2.57
2903 3108 6.154877 TCCATCAATAATGCCACTTGTCATTT 59.845 34.615 0.00 0.00 34.95 2.32
2904 3109 6.819649 CCATCAATAATGCCACTTGTCATTTT 59.180 34.615 0.00 0.00 34.95 1.82
2905 3110 7.201574 CCATCAATAATGCCACTTGTCATTTTG 60.202 37.037 0.00 0.00 34.95 2.44
2906 3111 6.757237 TCAATAATGCCACTTGTCATTTTGT 58.243 32.000 0.00 0.00 34.95 2.83
2907 3112 7.215789 TCAATAATGCCACTTGTCATTTTGTT 58.784 30.769 0.00 0.00 34.95 2.83
2908 3113 8.363390 TCAATAATGCCACTTGTCATTTTGTTA 58.637 29.630 0.00 0.00 34.95 2.41
2909 3114 9.153721 CAATAATGCCACTTGTCATTTTGTTAT 57.846 29.630 0.00 0.00 34.95 1.89
2913 3118 9.723601 AATGCCACTTGTCATTTTGTTATATTT 57.276 25.926 0.00 0.00 29.34 1.40
2914 3119 8.755696 TGCCACTTGTCATTTTGTTATATTTC 57.244 30.769 0.00 0.00 0.00 2.17
2915 3120 8.584157 TGCCACTTGTCATTTTGTTATATTTCT 58.416 29.630 0.00 0.00 0.00 2.52
2936 3141 8.767478 TTTCTATACCTTAGTTTTCTTCACGG 57.233 34.615 0.00 0.00 0.00 4.94
2937 3142 7.472334 TCTATACCTTAGTTTTCTTCACGGT 57.528 36.000 0.00 0.00 0.00 4.83
2938 3143 8.579850 TCTATACCTTAGTTTTCTTCACGGTA 57.420 34.615 0.00 0.00 0.00 4.02
2939 3144 9.193806 TCTATACCTTAGTTTTCTTCACGGTAT 57.806 33.333 0.00 0.00 39.21 2.73
2940 3145 9.245962 CTATACCTTAGTTTTCTTCACGGTATG 57.754 37.037 0.00 0.00 37.16 2.39
2941 3146 6.105397 ACCTTAGTTTTCTTCACGGTATGA 57.895 37.500 0.00 0.00 34.65 2.15
2942 3147 6.708285 ACCTTAGTTTTCTTCACGGTATGAT 58.292 36.000 0.00 0.00 37.11 2.45
2943 3148 7.166167 ACCTTAGTTTTCTTCACGGTATGATT 58.834 34.615 0.00 0.00 37.11 2.57
2944 3149 8.316214 ACCTTAGTTTTCTTCACGGTATGATTA 58.684 33.333 0.00 0.00 37.11 1.75
2945 3150 9.326413 CCTTAGTTTTCTTCACGGTATGATTAT 57.674 33.333 0.00 0.00 37.11 1.28
2949 3154 9.886132 AGTTTTCTTCACGGTATGATTATTACT 57.114 29.630 0.00 0.00 37.11 2.24
2952 3157 8.882415 TTCTTCACGGTATGATTATTACTTCC 57.118 34.615 0.00 0.00 37.11 3.46
2953 3158 8.246430 TCTTCACGGTATGATTATTACTTCCT 57.754 34.615 0.00 0.00 37.11 3.36
2954 3159 8.358148 TCTTCACGGTATGATTATTACTTCCTC 58.642 37.037 0.00 0.00 37.11 3.71
2955 3160 6.989659 TCACGGTATGATTATTACTTCCTCC 58.010 40.000 0.00 0.00 29.99 4.30
2956 3161 5.862323 CACGGTATGATTATTACTTCCTCCG 59.138 44.000 0.00 0.00 39.09 4.63
2957 3162 5.537674 ACGGTATGATTATTACTTCCTCCGT 59.462 40.000 0.00 0.00 40.96 4.69
2958 3163 6.041296 ACGGTATGATTATTACTTCCTCCGTT 59.959 38.462 0.00 0.00 42.66 4.44
2959 3164 6.585322 CGGTATGATTATTACTTCCTCCGTTC 59.415 42.308 0.00 0.00 0.00 3.95
2960 3165 6.872547 GGTATGATTATTACTTCCTCCGTTCC 59.127 42.308 0.00 0.00 0.00 3.62
2961 3166 6.749036 ATGATTATTACTTCCTCCGTTCCT 57.251 37.500 0.00 0.00 0.00 3.36
2962 3167 7.850935 ATGATTATTACTTCCTCCGTTCCTA 57.149 36.000 0.00 0.00 0.00 2.94
2963 3168 7.664552 TGATTATTACTTCCTCCGTTCCTAA 57.335 36.000 0.00 0.00 0.00 2.69
2964 3169 8.081517 TGATTATTACTTCCTCCGTTCCTAAA 57.918 34.615 0.00 0.00 0.00 1.85
2965 3170 8.711170 TGATTATTACTTCCTCCGTTCCTAAAT 58.289 33.333 0.00 0.00 0.00 1.40
2970 3175 8.726870 TTACTTCCTCCGTTCCTAAATATTTG 57.273 34.615 11.05 1.40 0.00 2.32
2971 3176 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2972 3177 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2973 3178 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
2974 3179 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
2975 3180 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
2976 3181 7.886446 TCCTCCGTTCCTAAATATTTGTCTTTT 59.114 33.333 11.05 0.00 0.00 2.27
2977 3182 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.164606 ACTAAAACGAGCGACACATTTTT 57.835 34.783 0.00 0.00 0.00 1.94
9 10 4.806342 ACTAAAACGAGCGACACATTTT 57.194 36.364 0.00 0.00 0.00 1.82
10 11 4.271533 TCAACTAAAACGAGCGACACATTT 59.728 37.500 0.00 0.00 0.00 2.32
11 12 3.805422 TCAACTAAAACGAGCGACACATT 59.195 39.130 0.00 0.00 0.00 2.71
12 13 3.386486 TCAACTAAAACGAGCGACACAT 58.614 40.909 0.00 0.00 0.00 3.21
13 14 2.811855 TCAACTAAAACGAGCGACACA 58.188 42.857 0.00 0.00 0.00 3.72
14 15 3.847037 TTCAACTAAAACGAGCGACAC 57.153 42.857 0.00 0.00 0.00 3.67
15 16 4.580528 GTTTTCAACTAAAACGAGCGACA 58.419 39.130 0.00 0.00 45.44 4.35
23 24 6.087952 AACGTTTCACGGTTTTCAACTAAAAC 59.912 34.615 0.00 5.07 39.21 2.43
24 25 6.148264 AACGTTTCACGGTTTTCAACTAAAA 58.852 32.000 0.00 0.00 39.21 1.52
25 26 5.697826 AACGTTTCACGGTTTTCAACTAAA 58.302 33.333 0.00 0.00 39.21 1.85
26 27 5.294050 AACGTTTCACGGTTTTCAACTAA 57.706 34.783 0.00 0.00 39.21 2.24
27 28 4.943142 AACGTTTCACGGTTTTCAACTA 57.057 36.364 0.00 0.00 39.21 2.24
28 29 3.835378 AACGTTTCACGGTTTTCAACT 57.165 38.095 0.00 0.00 39.21 3.16
39 40 2.700694 CACGGTGAGAAAACGTTTCAC 58.299 47.619 18.90 18.90 39.02 3.18
40 41 1.062880 GCACGGTGAGAAAACGTTTCA 59.937 47.619 15.01 5.45 39.02 2.69
47 48 2.045561 TTTCTGGCACGGTGAGAAAA 57.954 45.000 17.63 7.92 33.75 2.29
60 61 4.228912 ACAAACTCTTCGCATTTTCTGG 57.771 40.909 0.00 0.00 0.00 3.86
63 64 3.735746 CCCAACAAACTCTTCGCATTTTC 59.264 43.478 0.00 0.00 0.00 2.29
68 69 1.781025 CGCCCAACAAACTCTTCGCA 61.781 55.000 0.00 0.00 0.00 5.10
69 70 1.082104 CGCCCAACAAACTCTTCGC 60.082 57.895 0.00 0.00 0.00 4.70
70 71 1.082104 GCGCCCAACAAACTCTTCG 60.082 57.895 0.00 0.00 0.00 3.79
71 72 1.285950 GGCGCCCAACAAACTCTTC 59.714 57.895 18.11 0.00 0.00 2.87
72 73 1.454847 TGGCGCCCAACAAACTCTT 60.455 52.632 26.77 0.00 0.00 2.85
73 74 2.193536 GTGGCGCCCAACAAACTCT 61.194 57.895 26.77 0.00 34.18 3.24
160 161 2.492088 GCATTTATTATTCCGCCCTCCC 59.508 50.000 0.00 0.00 0.00 4.30
257 273 6.208204 ACCTGGTCTCATTGAATTCTTTTCTG 59.792 38.462 7.05 0.00 0.00 3.02
258 274 6.310149 ACCTGGTCTCATTGAATTCTTTTCT 58.690 36.000 7.05 0.00 0.00 2.52
259 275 6.432472 AGACCTGGTCTCATTGAATTCTTTTC 59.568 38.462 23.49 0.00 38.71 2.29
260 276 6.310149 AGACCTGGTCTCATTGAATTCTTTT 58.690 36.000 23.49 0.00 38.71 2.27
261 277 5.885465 AGACCTGGTCTCATTGAATTCTTT 58.115 37.500 23.49 0.00 38.71 2.52
262 278 5.511386 AGACCTGGTCTCATTGAATTCTT 57.489 39.130 23.49 0.00 38.71 2.52
274 290 2.282251 TCGCGTGAGACCTGGTCT 60.282 61.111 28.70 28.70 46.42 3.85
275 291 2.179517 CTCGCGTGAGACCTGGTC 59.820 66.667 21.40 19.20 45.57 4.02
276 292 2.282251 TCTCGCGTGAGACCTGGT 60.282 61.111 24.28 0.00 46.25 4.00
282 298 2.609723 CAGGATGAGTCTCGCGTGAGA 61.610 57.143 24.28 24.28 44.40 3.27
283 299 0.248417 CAGGATGAGTCTCGCGTGAG 60.248 60.000 19.99 19.99 40.76 3.51
284 300 0.676782 TCAGGATGAGTCTCGCGTGA 60.677 55.000 5.77 6.33 42.56 4.35
285 301 1.803289 TCAGGATGAGTCTCGCGTG 59.197 57.895 5.77 3.13 42.56 5.34
286 302 4.320910 TCAGGATGAGTCTCGCGT 57.679 55.556 5.77 0.00 42.56 6.01
296 312 2.610833 CCACGTGTCATTCATCAGGATG 59.389 50.000 15.65 2.84 40.09 3.51
297 313 2.910199 CCACGTGTCATTCATCAGGAT 58.090 47.619 15.65 0.00 0.00 3.24
298 314 1.675714 GCCACGTGTCATTCATCAGGA 60.676 52.381 15.65 0.00 0.00 3.86
299 315 0.729116 GCCACGTGTCATTCATCAGG 59.271 55.000 15.65 0.00 0.00 3.86
300 316 1.129251 GTGCCACGTGTCATTCATCAG 59.871 52.381 15.65 0.00 0.00 2.90
301 317 1.155889 GTGCCACGTGTCATTCATCA 58.844 50.000 15.65 0.00 0.00 3.07
302 318 1.394917 GAGTGCCACGTGTCATTCATC 59.605 52.381 15.96 3.31 0.00 2.92
303 319 1.270785 TGAGTGCCACGTGTCATTCAT 60.271 47.619 19.03 0.00 0.00 2.57
304 320 0.105778 TGAGTGCCACGTGTCATTCA 59.894 50.000 19.03 19.03 0.00 2.57
305 321 0.512952 GTGAGTGCCACGTGTCATTC 59.487 55.000 14.29 14.29 35.86 2.67
306 322 2.616969 GTGAGTGCCACGTGTCATT 58.383 52.632 15.65 4.14 35.86 2.57
307 323 4.361253 GTGAGTGCCACGTGTCAT 57.639 55.556 15.65 0.00 35.86 3.06
314 330 3.374745 CTTTGTGATTTGTGAGTGCCAC 58.625 45.455 0.00 0.00 45.88 5.01
315 331 2.223782 GCTTTGTGATTTGTGAGTGCCA 60.224 45.455 0.00 0.00 0.00 4.92
316 332 2.223782 TGCTTTGTGATTTGTGAGTGCC 60.224 45.455 0.00 0.00 0.00 5.01
317 333 3.082698 TGCTTTGTGATTTGTGAGTGC 57.917 42.857 0.00 0.00 0.00 4.40
318 334 4.022589 AGGATGCTTTGTGATTTGTGAGTG 60.023 41.667 0.00 0.00 0.00 3.51
319 335 4.147321 AGGATGCTTTGTGATTTGTGAGT 58.853 39.130 0.00 0.00 0.00 3.41
320 336 4.380233 GGAGGATGCTTTGTGATTTGTGAG 60.380 45.833 0.00 0.00 0.00 3.51
321 337 3.507233 GGAGGATGCTTTGTGATTTGTGA 59.493 43.478 0.00 0.00 0.00 3.58
322 338 3.256383 TGGAGGATGCTTTGTGATTTGTG 59.744 43.478 0.00 0.00 0.00 3.33
323 339 3.256631 GTGGAGGATGCTTTGTGATTTGT 59.743 43.478 0.00 0.00 0.00 2.83
324 340 3.367703 GGTGGAGGATGCTTTGTGATTTG 60.368 47.826 0.00 0.00 0.00 2.32
325 341 2.827921 GGTGGAGGATGCTTTGTGATTT 59.172 45.455 0.00 0.00 0.00 2.17
326 342 2.450476 GGTGGAGGATGCTTTGTGATT 58.550 47.619 0.00 0.00 0.00 2.57
327 343 1.341383 GGGTGGAGGATGCTTTGTGAT 60.341 52.381 0.00 0.00 0.00 3.06
328 344 0.038166 GGGTGGAGGATGCTTTGTGA 59.962 55.000 0.00 0.00 0.00 3.58
329 345 0.967380 GGGGTGGAGGATGCTTTGTG 60.967 60.000 0.00 0.00 0.00 3.33
330 346 1.384191 GGGGTGGAGGATGCTTTGT 59.616 57.895 0.00 0.00 0.00 2.83
331 347 1.380380 GGGGGTGGAGGATGCTTTG 60.380 63.158 0.00 0.00 0.00 2.77
332 348 3.100111 GGGGGTGGAGGATGCTTT 58.900 61.111 0.00 0.00 0.00 3.51
364 380 7.079451 TCATAAAACATCTAATCTCTCCCCC 57.921 40.000 0.00 0.00 0.00 5.40
365 381 9.579932 AAATCATAAAACATCTAATCTCTCCCC 57.420 33.333 0.00 0.00 0.00 4.81
374 390 9.585099 GGCATTCACAAATCATAAAACATCTAA 57.415 29.630 0.00 0.00 0.00 2.10
375 391 8.747471 TGGCATTCACAAATCATAAAACATCTA 58.253 29.630 0.00 0.00 0.00 1.98
376 392 7.546667 GTGGCATTCACAAATCATAAAACATCT 59.453 33.333 0.00 0.00 45.39 2.90
377 393 7.463119 CGTGGCATTCACAAATCATAAAACATC 60.463 37.037 0.00 0.00 46.36 3.06
378 394 6.310956 CGTGGCATTCACAAATCATAAAACAT 59.689 34.615 0.00 0.00 46.36 2.71
379 395 5.632764 CGTGGCATTCACAAATCATAAAACA 59.367 36.000 0.00 0.00 46.36 2.83
380 396 5.633182 ACGTGGCATTCACAAATCATAAAAC 59.367 36.000 0.00 0.00 46.36 2.43
381 397 5.632764 CACGTGGCATTCACAAATCATAAAA 59.367 36.000 7.95 0.00 46.36 1.52
382 398 5.159925 CACGTGGCATTCACAAATCATAAA 58.840 37.500 7.95 0.00 46.36 1.40
383 399 4.217334 ACACGTGGCATTCACAAATCATAA 59.783 37.500 21.57 0.00 46.36 1.90
384 400 3.755905 ACACGTGGCATTCACAAATCATA 59.244 39.130 21.57 0.00 46.36 2.15
385 401 2.557924 ACACGTGGCATTCACAAATCAT 59.442 40.909 21.57 0.00 46.36 2.45
386 402 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
387 403 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
388 404 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
389 405 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
390 406 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
391 407 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
392 408 1.442769 AGATGACACGTGGCATTCAC 58.557 50.000 36.07 23.79 45.42 3.18
393 409 3.118811 TGATAGATGACACGTGGCATTCA 60.119 43.478 36.07 30.53 45.42 2.57
394 410 3.457234 TGATAGATGACACGTGGCATTC 58.543 45.455 36.07 28.46 45.42 2.67
395 411 3.461061 CTGATAGATGACACGTGGCATT 58.539 45.455 36.07 26.04 45.42 3.56
397 413 1.136891 CCTGATAGATGACACGTGGCA 59.863 52.381 29.28 29.28 37.54 4.92
398 414 1.409064 TCCTGATAGATGACACGTGGC 59.591 52.381 21.57 19.24 0.00 5.01
399 415 2.541794 CGTCCTGATAGATGACACGTGG 60.542 54.545 21.57 1.66 0.00 4.94
400 416 2.541794 CCGTCCTGATAGATGACACGTG 60.542 54.545 15.48 15.48 0.00 4.49
401 417 1.676529 CCGTCCTGATAGATGACACGT 59.323 52.381 0.00 0.00 0.00 4.49
402 418 1.001268 CCCGTCCTGATAGATGACACG 60.001 57.143 0.00 0.00 0.00 4.49
403 419 2.032620 ACCCGTCCTGATAGATGACAC 58.967 52.381 0.00 0.00 0.00 3.67
404 420 2.091830 AGACCCGTCCTGATAGATGACA 60.092 50.000 0.00 0.00 0.00 3.58
405 421 2.554893 GAGACCCGTCCTGATAGATGAC 59.445 54.545 0.00 0.00 0.00 3.06
406 422 2.174854 TGAGACCCGTCCTGATAGATGA 59.825 50.000 0.00 0.00 0.00 2.92
407 423 2.294791 GTGAGACCCGTCCTGATAGATG 59.705 54.545 0.00 0.00 0.00 2.90
408 424 2.588620 GTGAGACCCGTCCTGATAGAT 58.411 52.381 0.00 0.00 0.00 1.98
409 425 1.409802 GGTGAGACCCGTCCTGATAGA 60.410 57.143 0.00 0.00 30.04 1.98
410 426 1.033574 GGTGAGACCCGTCCTGATAG 58.966 60.000 0.00 0.00 30.04 2.08
411 427 0.629596 AGGTGAGACCCGTCCTGATA 59.370 55.000 0.00 0.00 39.75 2.15
412 428 1.388531 AGGTGAGACCCGTCCTGAT 59.611 57.895 0.00 0.00 39.75 2.90
413 429 2.851801 AGGTGAGACCCGTCCTGA 59.148 61.111 0.00 0.00 39.75 3.86
414 430 2.973899 CAGGTGAGACCCGTCCTG 59.026 66.667 0.00 0.00 39.75 3.86
415 431 2.151307 TAGCAGGTGAGACCCGTCCT 62.151 60.000 0.00 0.00 39.75 3.85
416 432 1.255667 TTAGCAGGTGAGACCCGTCC 61.256 60.000 0.00 0.00 39.75 4.79
417 433 0.108756 GTTAGCAGGTGAGACCCGTC 60.109 60.000 0.00 0.00 39.75 4.79
418 434 1.542187 GGTTAGCAGGTGAGACCCGT 61.542 60.000 0.00 0.00 39.75 5.28
419 435 1.218316 GGTTAGCAGGTGAGACCCG 59.782 63.158 0.00 0.00 39.75 5.28
420 436 1.218316 CGGTTAGCAGGTGAGACCC 59.782 63.158 0.00 0.00 39.75 4.46
421 437 1.180029 TACGGTTAGCAGGTGAGACC 58.820 55.000 0.00 0.00 38.99 3.85
422 438 2.490903 TCTTACGGTTAGCAGGTGAGAC 59.509 50.000 0.00 0.00 0.00 3.36
423 439 2.490903 GTCTTACGGTTAGCAGGTGAGA 59.509 50.000 0.00 0.00 0.00 3.27
424 440 2.416972 GGTCTTACGGTTAGCAGGTGAG 60.417 54.545 0.00 0.00 0.00 3.51
425 441 1.547372 GGTCTTACGGTTAGCAGGTGA 59.453 52.381 0.00 0.00 0.00 4.02
426 442 1.549170 AGGTCTTACGGTTAGCAGGTG 59.451 52.381 0.00 0.00 0.00 4.00
427 443 1.549170 CAGGTCTTACGGTTAGCAGGT 59.451 52.381 0.00 0.00 0.00 4.00
428 444 1.134788 CCAGGTCTTACGGTTAGCAGG 60.135 57.143 0.00 0.00 0.00 4.85
429 445 1.549170 ACCAGGTCTTACGGTTAGCAG 59.451 52.381 0.00 0.00 0.00 4.24
430 446 1.547372 GACCAGGTCTTACGGTTAGCA 59.453 52.381 12.94 0.00 31.63 3.49
431 447 1.823610 AGACCAGGTCTTACGGTTAGC 59.176 52.381 17.31 0.00 40.28 3.09
432 448 3.087031 TGAGACCAGGTCTTACGGTTAG 58.913 50.000 23.78 0.00 43.53 2.34
433 449 3.159213 TGAGACCAGGTCTTACGGTTA 57.841 47.619 23.78 2.19 43.53 2.85
434 450 2.005370 TGAGACCAGGTCTTACGGTT 57.995 50.000 23.78 0.00 43.53 4.44
435 451 2.233305 ATGAGACCAGGTCTTACGGT 57.767 50.000 23.78 1.68 43.53 4.83
436 452 6.591750 ATTATATGAGACCAGGTCTTACGG 57.408 41.667 23.78 0.00 43.53 4.02
437 453 8.888579 AAAATTATATGAGACCAGGTCTTACG 57.111 34.615 23.78 0.00 43.53 3.18
463 479 4.273969 ACGTCGCCTGTCTTTATTGAAAAA 59.726 37.500 0.00 0.00 0.00 1.94
464 480 3.810941 ACGTCGCCTGTCTTTATTGAAAA 59.189 39.130 0.00 0.00 0.00 2.29
465 481 3.395639 ACGTCGCCTGTCTTTATTGAAA 58.604 40.909 0.00 0.00 0.00 2.69
466 482 2.991190 GACGTCGCCTGTCTTTATTGAA 59.009 45.455 0.00 0.00 33.54 2.69
467 483 2.602878 GACGTCGCCTGTCTTTATTGA 58.397 47.619 0.00 0.00 33.54 2.57
468 484 1.320555 CGACGTCGCCTGTCTTTATTG 59.679 52.381 26.59 0.00 34.17 1.90
469 485 1.625616 CGACGTCGCCTGTCTTTATT 58.374 50.000 26.59 0.00 34.17 1.40
470 486 3.324170 CGACGTCGCCTGTCTTTAT 57.676 52.632 26.59 0.00 34.17 1.40
471 487 4.853507 CGACGTCGCCTGTCTTTA 57.146 55.556 26.59 0.00 34.17 1.85
518 534 3.072476 TCCAGGCTGGAGAACTGC 58.928 61.111 32.01 0.00 42.67 4.40
540 559 3.680786 CGTGCGTGTGAGGGAGGA 61.681 66.667 0.00 0.00 0.00 3.71
572 597 2.043852 GGGGAGGACGAGCTGAGA 60.044 66.667 0.00 0.00 0.00 3.27
574 599 2.043852 GAGGGGAGGACGAGCTGA 60.044 66.667 0.00 0.00 0.00 4.26
581 606 2.124693 CGCAGAGAGAGGGGAGGAC 61.125 68.421 0.00 0.00 0.00 3.85
624 661 2.895426 TTCTCTCTCCCGCCTCTCCG 62.895 65.000 0.00 0.00 0.00 4.63
626 663 0.744281 CTTTCTCTCTCCCGCCTCTC 59.256 60.000 0.00 0.00 0.00 3.20
627 664 1.326951 GCTTTCTCTCTCCCGCCTCT 61.327 60.000 0.00 0.00 0.00 3.69
628 665 1.142965 GCTTTCTCTCTCCCGCCTC 59.857 63.158 0.00 0.00 0.00 4.70
629 666 2.716017 CGCTTTCTCTCTCCCGCCT 61.716 63.158 0.00 0.00 0.00 5.52
630 667 2.202810 CGCTTTCTCTCTCCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
631 668 1.226831 CTCGCTTTCTCTCTCCCGC 60.227 63.158 0.00 0.00 0.00 6.13
656 704 2.840102 CCCACCTCCCTCGCCTAG 60.840 72.222 0.00 0.00 0.00 3.02
657 705 4.475444 CCCCACCTCCCTCGCCTA 62.475 72.222 0.00 0.00 0.00 3.93
661 709 2.844839 GATCCCCCACCTCCCTCG 60.845 72.222 0.00 0.00 0.00 4.63
663 711 1.073397 GATGATCCCCCACCTCCCT 60.073 63.158 0.00 0.00 0.00 4.20
669 723 2.061790 GCCTCCTGATGATCCCCCAC 62.062 65.000 0.00 0.00 0.00 4.61
670 724 1.771746 GCCTCCTGATGATCCCCCA 60.772 63.158 0.00 0.00 0.00 4.96
671 725 1.064824 AAGCCTCCTGATGATCCCCC 61.065 60.000 0.00 0.00 0.00 5.40
672 726 0.849417 AAAGCCTCCTGATGATCCCC 59.151 55.000 0.00 0.00 0.00 4.81
673 727 2.305009 CAAAAGCCTCCTGATGATCCC 58.695 52.381 0.00 0.00 0.00 3.85
674 728 3.010200 ACAAAAGCCTCCTGATGATCC 57.990 47.619 0.00 0.00 0.00 3.36
675 729 4.381292 CCAAACAAAAGCCTCCTGATGATC 60.381 45.833 0.00 0.00 0.00 2.92
676 730 3.512724 CCAAACAAAAGCCTCCTGATGAT 59.487 43.478 0.00 0.00 0.00 2.45
677 731 2.892852 CCAAACAAAAGCCTCCTGATGA 59.107 45.455 0.00 0.00 0.00 2.92
678 732 2.629617 ACCAAACAAAAGCCTCCTGATG 59.370 45.455 0.00 0.00 0.00 3.07
737 791 1.946283 GCGCTTAAAGAAGGCAGAGGT 60.946 52.381 0.00 0.00 32.31 3.85
802 856 1.457455 GAGGGAGGCAGAGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
843 897 3.300765 GGCGGTATCGATCCCGGT 61.301 66.667 27.80 0.00 44.36 5.28
907 970 3.591835 GCGCGGAGGAGAGGAGAG 61.592 72.222 8.83 0.00 0.00 3.20
923 986 1.829096 GAGAGGGAGTAGTCGGGGC 60.829 68.421 0.00 0.00 0.00 5.80
926 989 1.682740 GGAAGAGAGGGAGTAGTCGG 58.317 60.000 0.00 0.00 0.00 4.79
928 991 2.018515 CACGGAAGAGAGGGAGTAGTC 58.981 57.143 0.00 0.00 0.00 2.59
929 992 1.341187 CCACGGAAGAGAGGGAGTAGT 60.341 57.143 0.00 0.00 0.00 2.73
930 993 1.394618 CCACGGAAGAGAGGGAGTAG 58.605 60.000 0.00 0.00 0.00 2.57
932 995 1.985116 GCCACGGAAGAGAGGGAGT 60.985 63.158 0.00 0.00 0.00 3.85
933 996 1.261238 AAGCCACGGAAGAGAGGGAG 61.261 60.000 0.00 0.00 0.00 4.30
934 997 0.836400 AAAGCCACGGAAGAGAGGGA 60.836 55.000 0.00 0.00 0.00 4.20
935 998 0.674895 CAAAGCCACGGAAGAGAGGG 60.675 60.000 0.00 0.00 0.00 4.30
936 999 1.301677 GCAAAGCCACGGAAGAGAGG 61.302 60.000 0.00 0.00 0.00 3.69
937 1000 2.166270 GCAAAGCCACGGAAGAGAG 58.834 57.895 0.00 0.00 0.00 3.20
938 1001 4.379174 GCAAAGCCACGGAAGAGA 57.621 55.556 0.00 0.00 0.00 3.10
949 1012 1.441016 CGCGTTTCTCAGGCAAAGC 60.441 57.895 0.00 0.00 35.91 3.51
960 1023 0.168128 CAAGATTCCACCCGCGTTTC 59.832 55.000 4.92 0.00 0.00 2.78
963 1026 2.046314 CCAAGATTCCACCCGCGT 60.046 61.111 4.92 0.00 0.00 6.01
964 1027 2.046314 ACCAAGATTCCACCCGCG 60.046 61.111 0.00 0.00 0.00 6.46
966 1029 1.449601 CCGACCAAGATTCCACCCG 60.450 63.158 0.00 0.00 0.00 5.28
970 1033 0.250234 CTCAGCCGACCAAGATTCCA 59.750 55.000 0.00 0.00 0.00 3.53
996 1089 2.361757 CGACTCCTGCTTCATCATCTCT 59.638 50.000 0.00 0.00 0.00 3.10
1080 1173 4.659172 CCCCGCTGGTCCTGCAAA 62.659 66.667 19.58 0.00 0.00 3.68
1128 1230 3.495806 CCTCCTCAAACAGCTTGTTCTCT 60.496 47.826 2.65 0.00 40.14 3.10
1343 1445 3.906980 CCCAGTCCAGGGTGAACT 58.093 61.111 0.00 0.00 44.24 3.01
1432 1543 4.069232 CTTGCGCTCCTGGTCCGA 62.069 66.667 9.73 0.00 0.00 4.55
1467 1578 1.552792 GCTTACTTGTGCTCCTCCTCT 59.447 52.381 0.00 0.00 0.00 3.69
1501 1616 1.348366 AGCCGTACATGTGTGGGTTAA 59.652 47.619 9.11 0.00 0.00 2.01
1515 1630 1.730064 GCAACGAGATTTGAAGCCGTA 59.270 47.619 0.00 0.00 32.81 4.02
1539 1672 1.290955 GTCCCACCGATCAACGACA 59.709 57.895 0.00 0.00 45.77 4.35
1544 1677 0.245539 GAGTTCGTCCCACCGATCAA 59.754 55.000 0.00 0.00 36.62 2.57
1574 1707 0.255890 GGCCCATCAAGAACAGCCTA 59.744 55.000 0.00 0.00 37.42 3.93
2011 2159 2.032528 TGCTGCTCCAAGGAACCG 59.967 61.111 0.00 0.00 0.00 4.44
2136 2302 2.520020 TCCGTCCGTCCAGTGTGT 60.520 61.111 0.00 0.00 0.00 3.72
2171 2344 1.372748 GCCGCTCATCCTCATCTCG 60.373 63.158 0.00 0.00 0.00 4.04
2191 2364 1.750930 CGTATCCATCCTGCTGCCT 59.249 57.895 0.00 0.00 0.00 4.75
2206 2379 4.260139 TGTACACAGAAGAAATGCCGTA 57.740 40.909 0.00 0.00 0.00 4.02
2282 2468 2.223994 GGGAGTAGCAAATAGGACGTCC 60.224 54.545 27.67 27.67 0.00 4.79
2283 2469 2.543238 CGGGAGTAGCAAATAGGACGTC 60.543 54.545 7.13 7.13 0.00 4.34
2284 2470 1.407979 CGGGAGTAGCAAATAGGACGT 59.592 52.381 0.00 0.00 0.00 4.34
2285 2471 1.679680 TCGGGAGTAGCAAATAGGACG 59.320 52.381 0.00 0.00 0.00 4.79
2286 2472 2.546162 GCTCGGGAGTAGCAAATAGGAC 60.546 54.545 0.00 0.00 39.83 3.85
2287 2473 1.687123 GCTCGGGAGTAGCAAATAGGA 59.313 52.381 0.00 0.00 39.83 2.94
2288 2474 1.270358 GGCTCGGGAGTAGCAAATAGG 60.270 57.143 0.00 0.00 41.93 2.57
2289 2475 1.412710 TGGCTCGGGAGTAGCAAATAG 59.587 52.381 0.00 0.00 41.93 1.73
2316 2502 2.281070 CAAGTGCTCCCAGTGCGT 60.281 61.111 0.00 0.00 0.00 5.24
2320 2506 1.477558 CCAAACTCAAGTGCTCCCAGT 60.478 52.381 0.00 0.00 0.00 4.00
2321 2507 1.242076 CCAAACTCAAGTGCTCCCAG 58.758 55.000 0.00 0.00 0.00 4.45
2322 2508 0.178992 CCCAAACTCAAGTGCTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2323 2509 0.110486 TCCCAAACTCAAGTGCTCCC 59.890 55.000 0.00 0.00 0.00 4.30
2324 2510 1.882623 CTTCCCAAACTCAAGTGCTCC 59.117 52.381 0.00 0.00 0.00 4.70
2325 2511 1.268079 GCTTCCCAAACTCAAGTGCTC 59.732 52.381 0.00 0.00 0.00 4.26
2326 2512 1.322442 GCTTCCCAAACTCAAGTGCT 58.678 50.000 0.00 0.00 0.00 4.40
2327 2513 1.032014 TGCTTCCCAAACTCAAGTGC 58.968 50.000 0.00 0.00 0.00 4.40
2328 2514 2.023673 TGTGCTTCCCAAACTCAAGTG 58.976 47.619 0.00 0.00 0.00 3.16
2336 2522 1.133945 TGTGCTAGTGTGCTTCCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
2477 2674 0.465705 ATACGGTATGCTGCTGCTGT 59.534 50.000 17.00 8.05 40.48 4.40
2478 2675 0.863799 CATACGGTATGCTGCTGCTG 59.136 55.000 17.00 0.77 40.48 4.41
2503 2700 5.163693 ACACGTTACAACAAGGGAAAAGAAG 60.164 40.000 0.00 0.00 0.00 2.85
2504 2701 4.701171 ACACGTTACAACAAGGGAAAAGAA 59.299 37.500 0.00 0.00 0.00 2.52
2511 2708 3.813166 AGATCAACACGTTACAACAAGGG 59.187 43.478 0.00 0.00 0.00 3.95
2517 2714 7.433719 CCAAATCAAAAGATCAACACGTTACAA 59.566 33.333 0.00 0.00 0.00 2.41
2538 2735 3.897505 GAGCAATGCTAATACCCCCAAAT 59.102 43.478 8.12 0.00 39.88 2.32
2542 2739 2.230660 GTGAGCAATGCTAATACCCCC 58.769 52.381 8.12 0.00 39.88 5.40
2545 2742 3.142174 GAGGGTGAGCAATGCTAATACC 58.858 50.000 20.64 20.64 39.88 2.73
2558 2763 0.543749 GGGGTCAATGAGAGGGTGAG 59.456 60.000 0.00 0.00 0.00 3.51
2588 2793 4.376413 CGCGCCATCAATGATCTAGTTAAC 60.376 45.833 0.00 0.00 0.00 2.01
2593 2798 0.441533 GCGCGCCATCAATGATCTAG 59.558 55.000 23.24 0.00 0.00 2.43
2594 2799 0.249826 TGCGCGCCATCAATGATCTA 60.250 50.000 30.77 0.71 0.00 1.98
2595 2800 1.524393 TGCGCGCCATCAATGATCT 60.524 52.632 30.77 0.00 0.00 2.75
2596 2801 1.369689 GTGCGCGCCATCAATGATC 60.370 57.895 30.77 0.00 0.00 2.92
2597 2802 1.820906 AGTGCGCGCCATCAATGAT 60.821 52.632 30.77 0.12 0.00 2.45
2598 2803 2.436469 AGTGCGCGCCATCAATGA 60.436 55.556 30.77 3.44 0.00 2.57
2599 2804 2.277692 CAGTGCGCGCCATCAATG 60.278 61.111 30.77 15.78 0.00 2.82
2600 2805 4.183686 GCAGTGCGCGCCATCAAT 62.184 61.111 30.77 5.83 0.00 2.57
2617 2822 0.373716 GTCAAAATAGACGGGCGCAG 59.626 55.000 10.83 4.90 0.00 5.18
2618 2823 0.036765 AGTCAAAATAGACGGGCGCA 60.037 50.000 10.83 0.00 43.24 6.09
2619 2824 1.084289 AAGTCAAAATAGACGGGCGC 58.916 50.000 0.00 0.00 43.24 6.53
2620 2825 6.780706 AATATAAGTCAAAATAGACGGGCG 57.219 37.500 0.00 0.00 43.24 6.13
2621 2826 6.856426 GCAAATATAAGTCAAAATAGACGGGC 59.144 38.462 0.00 0.00 43.24 6.13
2622 2827 8.154649 AGCAAATATAAGTCAAAATAGACGGG 57.845 34.615 0.00 0.00 43.24 5.28
2650 2855 9.880157 ACAAATGTATACCAATTACTTCGTAGT 57.120 29.630 0.00 0.00 38.44 2.73
2653 2858 9.834628 CAAACAAATGTATACCAATTACTTCGT 57.165 29.630 0.00 0.00 0.00 3.85
2669 2874 9.651913 AGAAAACACAATACTTCAAACAAATGT 57.348 25.926 0.00 0.00 0.00 2.71
2672 2877 9.921637 AGAAGAAAACACAATACTTCAAACAAA 57.078 25.926 0.00 0.00 39.22 2.83
2673 2878 9.352784 CAGAAGAAAACACAATACTTCAAACAA 57.647 29.630 0.00 0.00 39.22 2.83
2674 2879 7.973388 CCAGAAGAAAACACAATACTTCAAACA 59.027 33.333 0.00 0.00 39.22 2.83
2675 2880 7.043391 GCCAGAAGAAAACACAATACTTCAAAC 60.043 37.037 0.00 0.00 39.22 2.93
2676 2881 6.978080 GCCAGAAGAAAACACAATACTTCAAA 59.022 34.615 0.00 0.00 39.22 2.69
2677 2882 6.321181 AGCCAGAAGAAAACACAATACTTCAA 59.679 34.615 0.00 0.00 39.22 2.69
2678 2883 5.827797 AGCCAGAAGAAAACACAATACTTCA 59.172 36.000 0.00 0.00 39.22 3.02
2679 2884 6.319141 AGCCAGAAGAAAACACAATACTTC 57.681 37.500 0.00 0.00 37.71 3.01
2680 2885 6.715347 AAGCCAGAAGAAAACACAATACTT 57.285 33.333 0.00 0.00 0.00 2.24
2681 2886 6.715347 AAAGCCAGAAGAAAACACAATACT 57.285 33.333 0.00 0.00 0.00 2.12
2682 2887 6.200854 CCAAAAGCCAGAAGAAAACACAATAC 59.799 38.462 0.00 0.00 0.00 1.89
2683 2888 6.127196 ACCAAAAGCCAGAAGAAAACACAATA 60.127 34.615 0.00 0.00 0.00 1.90
2684 2889 5.118286 CCAAAAGCCAGAAGAAAACACAAT 58.882 37.500 0.00 0.00 0.00 2.71
2685 2890 4.020662 ACCAAAAGCCAGAAGAAAACACAA 60.021 37.500 0.00 0.00 0.00 3.33
2686 2891 3.513515 ACCAAAAGCCAGAAGAAAACACA 59.486 39.130 0.00 0.00 0.00 3.72
2687 2892 4.123497 ACCAAAAGCCAGAAGAAAACAC 57.877 40.909 0.00 0.00 0.00 3.32
2688 2893 4.817318 AACCAAAAGCCAGAAGAAAACA 57.183 36.364 0.00 0.00 0.00 2.83
2689 2894 7.042051 GGAAATAACCAAAAGCCAGAAGAAAAC 60.042 37.037 0.00 0.00 0.00 2.43
2690 2895 6.989759 GGAAATAACCAAAAGCCAGAAGAAAA 59.010 34.615 0.00 0.00 0.00 2.29
2691 2896 6.326323 AGGAAATAACCAAAAGCCAGAAGAAA 59.674 34.615 0.00 0.00 0.00 2.52
2692 2897 5.838521 AGGAAATAACCAAAAGCCAGAAGAA 59.161 36.000 0.00 0.00 0.00 2.52
2693 2898 5.393866 AGGAAATAACCAAAAGCCAGAAGA 58.606 37.500 0.00 0.00 0.00 2.87
2694 2899 5.336770 GGAGGAAATAACCAAAAGCCAGAAG 60.337 44.000 0.00 0.00 0.00 2.85
2695 2900 4.526650 GGAGGAAATAACCAAAAGCCAGAA 59.473 41.667 0.00 0.00 0.00 3.02
2696 2901 4.086457 GGAGGAAATAACCAAAAGCCAGA 58.914 43.478 0.00 0.00 0.00 3.86
2697 2902 3.119495 CGGAGGAAATAACCAAAAGCCAG 60.119 47.826 0.00 0.00 0.00 4.85
2698 2903 2.823154 CGGAGGAAATAACCAAAAGCCA 59.177 45.455 0.00 0.00 0.00 4.75
2699 2904 3.503827 CGGAGGAAATAACCAAAAGCC 57.496 47.619 0.00 0.00 0.00 4.35
2713 2918 3.923495 TAACTCCAGGTTGCCGGAGGA 62.923 57.143 5.05 0.42 45.20 3.71
2714 2919 1.550130 TAACTCCAGGTTGCCGGAGG 61.550 60.000 5.05 0.00 43.42 4.30
2715 2920 0.541863 ATAACTCCAGGTTGCCGGAG 59.458 55.000 5.05 17.85 44.11 4.63
2716 2921 0.251916 CATAACTCCAGGTTGCCGGA 59.748 55.000 5.05 0.00 38.75 5.14
2717 2922 0.251916 TCATAACTCCAGGTTGCCGG 59.748 55.000 0.00 0.00 38.75 6.13
2718 2923 2.107950 TTCATAACTCCAGGTTGCCG 57.892 50.000 0.00 0.00 38.75 5.69
2719 2924 4.864704 TTTTTCATAACTCCAGGTTGCC 57.135 40.909 0.00 0.00 38.75 4.52
2737 2942 7.345422 AGCCTTGTAAAATTTTGGCATTTTT 57.655 28.000 24.12 7.49 42.46 1.94
2738 2943 6.957920 AGCCTTGTAAAATTTTGGCATTTT 57.042 29.167 24.12 7.78 42.46 1.82
2739 2944 6.957920 AAGCCTTGTAAAATTTTGGCATTT 57.042 29.167 24.12 12.84 42.46 2.32
2740 2945 6.320926 ACAAAGCCTTGTAAAATTTTGGCATT 59.679 30.769 24.12 18.30 44.14 3.56
2741 2946 5.827267 ACAAAGCCTTGTAAAATTTTGGCAT 59.173 32.000 24.12 14.47 44.14 4.40
2742 2947 5.065731 CACAAAGCCTTGTAAAATTTTGGCA 59.934 36.000 24.12 15.68 44.15 4.92
2743 2948 5.295540 TCACAAAGCCTTGTAAAATTTTGGC 59.704 36.000 17.90 17.90 44.15 4.52
2744 2949 6.917217 TCACAAAGCCTTGTAAAATTTTGG 57.083 33.333 13.76 7.13 44.15 3.28
2745 2950 9.786105 AAATTCACAAAGCCTTGTAAAATTTTG 57.214 25.926 18.59 6.82 44.15 2.44
2749 2954 9.051679 GGTTAAATTCACAAAGCCTTGTAAAAT 57.948 29.630 0.00 1.75 44.15 1.82
2750 2955 8.261522 AGGTTAAATTCACAAAGCCTTGTAAAA 58.738 29.630 0.00 0.00 44.15 1.52
2751 2956 7.787028 AGGTTAAATTCACAAAGCCTTGTAAA 58.213 30.769 0.00 0.00 44.15 2.01
2752 2957 7.354751 AGGTTAAATTCACAAAGCCTTGTAA 57.645 32.000 0.00 0.00 44.15 2.41
2753 2958 6.969993 AGGTTAAATTCACAAAGCCTTGTA 57.030 33.333 0.00 0.00 44.15 2.41
2755 2960 7.926018 ACTAAAGGTTAAATTCACAAAGCCTTG 59.074 33.333 0.00 0.00 35.54 3.61
2756 2961 8.018537 ACTAAAGGTTAAATTCACAAAGCCTT 57.981 30.769 0.00 0.00 36.75 4.35
2757 2962 7.597288 ACTAAAGGTTAAATTCACAAAGCCT 57.403 32.000 0.00 0.00 0.00 4.58
2758 2963 8.657074 AAACTAAAGGTTAAATTCACAAAGCC 57.343 30.769 0.00 0.00 37.12 4.35
2813 3018 9.103861 TGCACGTGTATTAATATCAGAAATTCA 57.896 29.630 18.38 0.00 0.00 2.57
2814 3019 9.370126 GTGCACGTGTATTAATATCAGAAATTC 57.630 33.333 18.38 0.00 0.00 2.17
2815 3020 8.061857 CGTGCACGTGTATTAATATCAGAAATT 58.938 33.333 30.50 0.00 34.11 1.82
2816 3021 7.436970 TCGTGCACGTGTATTAATATCAGAAAT 59.563 33.333 35.74 0.00 40.80 2.17
2817 3022 6.752815 TCGTGCACGTGTATTAATATCAGAAA 59.247 34.615 35.74 9.73 40.80 2.52
2818 3023 6.267070 TCGTGCACGTGTATTAATATCAGAA 58.733 36.000 35.74 10.09 40.80 3.02
2819 3024 5.823353 TCGTGCACGTGTATTAATATCAGA 58.177 37.500 35.74 10.49 40.80 3.27
2820 3025 6.451183 CGATCGTGCACGTGTATTAATATCAG 60.451 42.308 35.74 19.13 40.80 2.90
2821 3026 5.341196 CGATCGTGCACGTGTATTAATATCA 59.659 40.000 35.74 14.59 40.80 2.15
2822 3027 5.219969 CCGATCGTGCACGTGTATTAATATC 60.220 44.000 35.74 25.20 40.80 1.63
2823 3028 4.619760 CCGATCGTGCACGTGTATTAATAT 59.380 41.667 35.74 20.07 40.80 1.28
2824 3029 3.976306 CCGATCGTGCACGTGTATTAATA 59.024 43.478 35.74 16.09 40.80 0.98
2825 3030 2.792674 CCGATCGTGCACGTGTATTAAT 59.207 45.455 35.74 21.52 40.80 1.40
2826 3031 2.186891 CCGATCGTGCACGTGTATTAA 58.813 47.619 35.74 17.61 40.80 1.40
2827 3032 1.830086 CCGATCGTGCACGTGTATTA 58.170 50.000 35.74 18.37 40.80 0.98
2828 3033 1.418342 GCCGATCGTGCACGTGTATT 61.418 55.000 35.74 17.97 40.80 1.89
2829 3034 1.876714 GCCGATCGTGCACGTGTAT 60.877 57.895 35.74 23.71 40.80 2.29
2830 3035 2.505337 GCCGATCGTGCACGTGTA 60.505 61.111 35.74 19.91 40.80 2.90
2831 3036 4.656117 TGCCGATCGTGCACGTGT 62.656 61.111 35.74 26.02 40.80 4.49
2839 3044 2.292794 ATAAGTGCCGTGCCGATCGT 62.293 55.000 15.09 0.00 0.00 3.73
2840 3045 0.318360 TATAAGTGCCGTGCCGATCG 60.318 55.000 8.51 8.51 0.00 3.69
2841 3046 1.137513 GTATAAGTGCCGTGCCGATC 58.862 55.000 0.00 0.00 0.00 3.69
2842 3047 0.249741 GGTATAAGTGCCGTGCCGAT 60.250 55.000 0.00 0.00 0.00 4.18
2843 3048 1.142314 GGTATAAGTGCCGTGCCGA 59.858 57.895 0.00 0.00 0.00 5.54
2844 3049 2.235016 CGGTATAAGTGCCGTGCCG 61.235 63.158 0.00 0.00 46.84 5.69
2845 3050 3.713963 CGGTATAAGTGCCGTGCC 58.286 61.111 0.00 0.00 46.84 5.01
2850 3055 3.181469 TGGAGTCATTCGGTATAAGTGCC 60.181 47.826 0.00 0.00 0.00 5.01
2851 3056 4.051922 CTGGAGTCATTCGGTATAAGTGC 58.948 47.826 0.00 0.00 0.00 4.40
2852 3057 5.263968 ACTGGAGTCATTCGGTATAAGTG 57.736 43.478 0.00 0.00 0.00 3.16
2853 3058 7.598759 AATACTGGAGTCATTCGGTATAAGT 57.401 36.000 0.00 0.00 30.55 2.24
2854 3059 7.599245 GGAAATACTGGAGTCATTCGGTATAAG 59.401 40.741 0.00 0.00 30.55 1.73
2855 3060 7.070198 TGGAAATACTGGAGTCATTCGGTATAA 59.930 37.037 0.00 0.00 30.55 0.98
2856 3061 6.551975 TGGAAATACTGGAGTCATTCGGTATA 59.448 38.462 0.00 0.00 30.55 1.47
2857 3062 5.365605 TGGAAATACTGGAGTCATTCGGTAT 59.634 40.000 0.00 0.00 31.37 2.73
2858 3063 4.712829 TGGAAATACTGGAGTCATTCGGTA 59.287 41.667 0.00 0.00 0.00 4.02
2859 3064 3.517901 TGGAAATACTGGAGTCATTCGGT 59.482 43.478 0.00 0.00 0.00 4.69
2860 3065 4.137116 TGGAAATACTGGAGTCATTCGG 57.863 45.455 0.00 0.00 0.00 4.30
2861 3066 5.359756 TGATGGAAATACTGGAGTCATTCG 58.640 41.667 0.00 0.00 0.00 3.34
2862 3067 7.814264 ATTGATGGAAATACTGGAGTCATTC 57.186 36.000 0.00 0.00 0.00 2.67
2863 3068 9.872684 ATTATTGATGGAAATACTGGAGTCATT 57.127 29.630 0.00 0.00 0.00 2.57
2864 3069 9.293404 CATTATTGATGGAAATACTGGAGTCAT 57.707 33.333 0.00 0.00 31.83 3.06
2865 3070 7.229306 GCATTATTGATGGAAATACTGGAGTCA 59.771 37.037 0.00 0.00 36.21 3.41
2866 3071 7.308830 GGCATTATTGATGGAAATACTGGAGTC 60.309 40.741 0.00 0.00 36.21 3.36
2867 3072 6.491403 GGCATTATTGATGGAAATACTGGAGT 59.509 38.462 0.00 0.00 36.21 3.85
2868 3073 6.491062 TGGCATTATTGATGGAAATACTGGAG 59.509 38.462 0.00 0.00 36.21 3.86
2869 3074 6.265196 GTGGCATTATTGATGGAAATACTGGA 59.735 38.462 0.00 0.00 36.21 3.86
2870 3075 6.266103 AGTGGCATTATTGATGGAAATACTGG 59.734 38.462 0.00 0.00 36.21 4.00
2871 3076 7.281040 AGTGGCATTATTGATGGAAATACTG 57.719 36.000 0.00 0.00 36.21 2.74
2872 3077 7.342799 ACAAGTGGCATTATTGATGGAAATACT 59.657 33.333 14.45 0.00 36.21 2.12
2873 3078 7.491682 ACAAGTGGCATTATTGATGGAAATAC 58.508 34.615 14.45 0.00 36.21 1.89
2874 3079 7.341512 TGACAAGTGGCATTATTGATGGAAATA 59.658 33.333 14.45 0.00 36.21 1.40
2875 3080 6.154877 TGACAAGTGGCATTATTGATGGAAAT 59.845 34.615 14.45 0.00 36.21 2.17
2876 3081 5.479724 TGACAAGTGGCATTATTGATGGAAA 59.520 36.000 14.45 0.00 36.21 3.13
2877 3082 5.015515 TGACAAGTGGCATTATTGATGGAA 58.984 37.500 14.45 0.00 36.21 3.53
2878 3083 4.598022 TGACAAGTGGCATTATTGATGGA 58.402 39.130 14.45 0.00 36.21 3.41
2879 3084 4.987408 TGACAAGTGGCATTATTGATGG 57.013 40.909 14.45 0.00 36.21 3.51
2889 3094 8.584157 AGAAATATAACAAAATGACAAGTGGCA 58.416 29.630 0.00 0.00 37.54 4.92
2890 3095 8.986477 AGAAATATAACAAAATGACAAGTGGC 57.014 30.769 0.00 0.00 0.00 5.01
2910 3115 9.379791 CCGTGAAGAAAACTAAGGTATAGAAAT 57.620 33.333 0.00 0.00 0.00 2.17
2911 3116 8.370182 ACCGTGAAGAAAACTAAGGTATAGAAA 58.630 33.333 0.00 0.00 0.00 2.52
2912 3117 7.899973 ACCGTGAAGAAAACTAAGGTATAGAA 58.100 34.615 0.00 0.00 0.00 2.10
2913 3118 7.472334 ACCGTGAAGAAAACTAAGGTATAGA 57.528 36.000 0.00 0.00 0.00 1.98
2914 3119 9.245962 CATACCGTGAAGAAAACTAAGGTATAG 57.754 37.037 3.84 0.00 40.50 1.31
2915 3120 8.970020 TCATACCGTGAAGAAAACTAAGGTATA 58.030 33.333 3.84 0.00 40.50 1.47
2916 3121 7.844009 TCATACCGTGAAGAAAACTAAGGTAT 58.156 34.615 0.00 0.00 42.43 2.73
2917 3122 7.230849 TCATACCGTGAAGAAAACTAAGGTA 57.769 36.000 0.00 0.00 37.39 3.08
2918 3123 6.105397 TCATACCGTGAAGAAAACTAAGGT 57.895 37.500 0.00 0.00 32.78 3.50
2919 3124 7.611213 AATCATACCGTGAAGAAAACTAAGG 57.389 36.000 0.00 0.00 40.97 2.69
2923 3128 9.886132 AGTAATAATCATACCGTGAAGAAAACT 57.114 29.630 0.00 0.00 40.97 2.66
2926 3131 9.321562 GGAAGTAATAATCATACCGTGAAGAAA 57.678 33.333 0.00 0.00 40.97 2.52
2927 3132 8.701895 AGGAAGTAATAATCATACCGTGAAGAA 58.298 33.333 0.00 0.00 40.97 2.52
2928 3133 8.246430 AGGAAGTAATAATCATACCGTGAAGA 57.754 34.615 0.00 0.00 40.97 2.87
2929 3134 7.599245 GGAGGAAGTAATAATCATACCGTGAAG 59.401 40.741 0.00 0.00 40.97 3.02
2930 3135 7.439381 GGAGGAAGTAATAATCATACCGTGAA 58.561 38.462 0.00 0.00 40.97 3.18
2931 3136 6.294342 CGGAGGAAGTAATAATCATACCGTGA 60.294 42.308 0.00 0.00 42.06 4.35
2932 3137 5.862323 CGGAGGAAGTAATAATCATACCGTG 59.138 44.000 0.00 0.00 0.00 4.94
2933 3138 5.537674 ACGGAGGAAGTAATAATCATACCGT 59.462 40.000 0.00 0.00 42.81 4.83
2934 3139 6.022163 ACGGAGGAAGTAATAATCATACCG 57.978 41.667 0.00 0.00 40.94 4.02
2935 3140 6.872547 GGAACGGAGGAAGTAATAATCATACC 59.127 42.308 0.00 0.00 0.00 2.73
2936 3141 7.668492 AGGAACGGAGGAAGTAATAATCATAC 58.332 38.462 0.00 0.00 0.00 2.39
2937 3142 7.850935 AGGAACGGAGGAAGTAATAATCATA 57.149 36.000 0.00 0.00 0.00 2.15
2938 3143 6.749036 AGGAACGGAGGAAGTAATAATCAT 57.251 37.500 0.00 0.00 0.00 2.45
2939 3144 7.664552 TTAGGAACGGAGGAAGTAATAATCA 57.335 36.000 0.00 0.00 0.00 2.57
2944 3149 9.338622 CAAATATTTAGGAACGGAGGAAGTAAT 57.661 33.333 0.00 0.00 0.00 1.89
2945 3150 8.323567 ACAAATATTTAGGAACGGAGGAAGTAA 58.676 33.333 0.00 0.00 0.00 2.24
2946 3151 7.854337 ACAAATATTTAGGAACGGAGGAAGTA 58.146 34.615 0.00 0.00 0.00 2.24
2947 3152 6.718294 ACAAATATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
2948 3153 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
2949 3154 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
2950 3155 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
2951 3156 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.