Multiple sequence alignment - TraesCS1B01G287300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G287300 chr1B 100.000 5517 0 0 1 5517 499472837 499467321 0.000000e+00 10189.0
1 TraesCS1B01G287300 chr1B 87.090 457 55 4 3720 4174 99753566 99753112 1.060000e-141 514.0
2 TraesCS1B01G287300 chr1B 88.966 290 32 0 2122 2411 99754996 99754707 5.250000e-95 359.0
3 TraesCS1B01G287300 chr1B 82.381 210 29 7 1311 1514 99755387 99755180 5.680000e-40 176.0
4 TraesCS1B01G287300 chr1B 89.256 121 13 0 5014 5134 499467137 499467257 9.570000e-33 152.0
5 TraesCS1B01G287300 chr1A 93.263 2449 97 32 2415 4821 474227503 474225081 0.000000e+00 3546.0
6 TraesCS1B01G287300 chr1A 84.722 2101 160 77 1 2034 474230135 474228129 0.000000e+00 1953.0
7 TraesCS1B01G287300 chr1A 86.581 544 30 14 5014 5516 579950633 579950092 1.340000e-155 560.0
8 TraesCS1B01G287300 chr1A 87.090 457 55 4 3720 4174 60737111 60737565 1.060000e-141 514.0
9 TraesCS1B01G287300 chr1A 88.235 289 34 0 2123 2411 60735708 60735996 4.090000e-91 346.0
10 TraesCS1B01G287300 chr1A 93.913 230 10 2 2083 2310 474228032 474227805 1.470000e-90 344.0
11 TraesCS1B01G287300 chr1A 96.396 111 4 0 2306 2416 474227676 474227566 3.390000e-42 183.0
12 TraesCS1B01G287300 chr1A 97.222 36 1 0 5099 5134 582555067 582555102 1.660000e-05 62.1
13 TraesCS1B01G287300 chr1D 86.507 2379 131 78 1 2310 374475338 374473081 0.000000e+00 2440.0
14 TraesCS1B01G287300 chr1D 95.628 1075 21 5 3661 4713 374471560 374470490 0.000000e+00 1701.0
15 TraesCS1B01G287300 chr1D 93.849 1008 40 12 2631 3617 374472564 374471558 0.000000e+00 1498.0
16 TraesCS1B01G287300 chr1D 86.652 457 57 4 3720 4174 62599375 62598921 2.290000e-138 503.0
17 TraesCS1B01G287300 chr1D 88.125 320 17 9 2306 2605 374472956 374472638 1.460000e-95 361.0
18 TraesCS1B01G287300 chr1D 88.966 290 32 0 2122 2411 62600778 62600489 5.250000e-95 359.0
19 TraesCS1B01G287300 chr1D 83.938 193 27 3 1311 1501 62601179 62600989 1.220000e-41 182.0
20 TraesCS1B01G287300 chr1D 92.105 114 7 1 4711 4822 374460537 374460424 5.720000e-35 159.0
21 TraesCS1B01G287300 chr3A 91.028 457 41 0 3721 4177 620218450 620217994 7.850000e-173 617.0
22 TraesCS1B01G287300 chr3A 84.826 547 29 17 5014 5516 716972340 716971804 8.250000e-138 501.0
23 TraesCS1B01G287300 chr3A 88.776 294 29 4 2122 2413 620220605 620220314 1.890000e-94 357.0
24 TraesCS1B01G287300 chr3A 92.424 198 13 2 1305 1501 620221453 620221257 1.170000e-71 281.0
25 TraesCS1B01G287300 chr3A 95.763 118 5 0 1893 2010 620220795 620220678 2.030000e-44 191.0
26 TraesCS1B01G287300 chr3A 82.927 123 16 4 1087 1208 620221660 620221542 7.560000e-19 106.0
27 TraesCS1B01G287300 chr3D 90.611 458 43 0 3720 4177 476553621 476554078 4.730000e-170 608.0
28 TraesCS1B01G287300 chr3D 88.356 292 30 4 2122 2411 476551514 476551803 1.140000e-91 348.0
29 TraesCS1B01G287300 chr3D 92.784 194 12 2 1309 1501 476550592 476550784 4.210000e-71 279.0
30 TraesCS1B01G287300 chr3D 97.458 118 3 0 1893 2010 476551269 476551386 9.370000e-48 202.0
31 TraesCS1B01G287300 chr3D 83.077 130 18 3 1087 1216 476550380 476550505 1.260000e-21 115.0
32 TraesCS1B01G287300 chr3B 90.372 457 44 0 3721 4177 635220435 635220891 7.910000e-168 601.0
33 TraesCS1B01G287300 chr3B 85.531 546 35 16 5013 5516 572243521 572242978 1.050000e-146 531.0
34 TraesCS1B01G287300 chr3B 85.616 292 38 4 2122 2411 635218372 635218661 2.500000e-78 303.0
35 TraesCS1B01G287300 chr3B 92.784 194 12 2 1309 1501 635217460 635217652 4.210000e-71 279.0
36 TraesCS1B01G287300 chr3B 96.610 118 4 0 1893 2010 635218125 635218242 4.360000e-46 196.0
37 TraesCS1B01G287300 chr3B 92.381 105 8 0 4908 5012 40145429 40145325 3.440000e-32 150.0
38 TraesCS1B01G287300 chr3B 92.381 105 8 0 4908 5012 40146940 40146836 3.440000e-32 150.0
39 TraesCS1B01G287300 chr3B 91.429 105 9 0 4908 5012 40155921 40155817 1.600000e-30 145.0
40 TraesCS1B01G287300 chr3B 86.869 99 13 0 1114 1212 635217265 635217363 1.620000e-20 111.0
41 TraesCS1B01G287300 chr7A 86.556 543 34 19 5011 5516 493380313 493380853 3.730000e-156 562.0
42 TraesCS1B01G287300 chr7A 85.897 546 33 12 5013 5516 8765743 8765200 4.860000e-150 542.0
43 TraesCS1B01G287300 chr7A 83.818 550 31 18 5015 5516 625706192 625706731 2.330000e-128 470.0
44 TraesCS1B01G287300 chr7A 97.059 102 3 0 4908 5009 681945085 681945186 7.350000e-39 172.0
45 TraesCS1B01G287300 chr7A 93.137 102 7 0 4908 5009 707615402 707615301 3.440000e-32 150.0
46 TraesCS1B01G287300 chr7A 92.157 102 8 0 4908 5009 710763837 710763938 1.600000e-30 145.0
47 TraesCS1B01G287300 chr7A 89.216 102 11 0 5014 5115 493381047 493380946 1.610000e-25 128.0
48 TraesCS1B01G287300 chr7A 88.235 102 12 0 5014 5115 8765006 8765107 7.510000e-24 122.0
49 TraesCS1B01G287300 chr2B 86.055 545 32 12 5014 5516 65300687 65300145 3.760000e-151 545.0
50 TraesCS1B01G287300 chr2B 85.065 154 23 0 4860 5013 66664091 66663938 2.060000e-34 158.0
51 TraesCS1B01G287300 chr5D 88.943 407 24 13 5129 5516 424818529 424818125 2.990000e-132 483.0
52 TraesCS1B01G287300 chr4D 85.256 468 63 5 3720 4184 386436136 386435672 1.390000e-130 477.0
53 TraesCS1B01G287300 chr4D 85.911 291 37 4 2122 2410 88122316 88122604 1.930000e-79 307.0
54 TraesCS1B01G287300 chr4D 88.136 118 14 0 1893 2010 386437956 386437839 2.070000e-29 141.0
55 TraesCS1B01G287300 chr4D 91.176 102 9 0 4908 5009 6294258 6294359 7.450000e-29 139.0
56 TraesCS1B01G287300 chr5B 83.942 548 34 23 5013 5516 20646947 20646410 5.000000e-130 475.0
57 TraesCS1B01G287300 chr5B 92.157 102 8 0 4908 5009 9005017 9004916 1.600000e-30 145.0
58 TraesCS1B01G287300 chr5B 97.222 36 1 0 5099 5134 633776639 633776674 1.660000e-05 62.1
59 TraesCS1B01G287300 chr5B 100.000 28 0 0 4832 4859 102640592 102640565 1.000000e-02 52.8
60 TraesCS1B01G287300 chr4A 81.767 532 34 27 1504 2019 197979538 197980022 2.410000e-103 387.0
61 TraesCS1B01G287300 chr4A 94.836 213 11 0 1298 1510 197971105 197971317 3.180000e-87 333.0
62 TraesCS1B01G287300 chr4A 83.770 191 27 3 1311 1499 500901032 500901220 1.580000e-40 178.0
63 TraesCS1B01G287300 chr4A 88.136 118 14 0 1893 2010 67894297 67894180 2.070000e-29 141.0
64 TraesCS1B01G287300 chr4A 77.273 132 16 8 5014 5134 173933787 173933915 1.280000e-06 65.8
65 TraesCS1B01G287300 chr4A 97.222 36 1 0 5099 5134 88468014 88467979 1.660000e-05 62.1
66 TraesCS1B01G287300 chr4B 88.136 118 14 0 1893 2010 473571692 473571575 2.070000e-29 141.0
67 TraesCS1B01G287300 chr4B 97.222 36 1 0 5099 5134 628600136 628600171 1.660000e-05 62.1
68 TraesCS1B01G287300 chr5A 97.222 36 1 0 5099 5134 677959281 677959316 1.660000e-05 62.1
69 TraesCS1B01G287300 chr5A 97.222 36 1 0 5099 5134 705312400 705312435 1.660000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G287300 chr1B 499467321 499472837 5516 True 10189.000000 10189 100.000000 1 5517 1 chr1B.!!$R1 5516
1 TraesCS1B01G287300 chr1B 99753112 99755387 2275 True 349.666667 514 86.145667 1311 4174 3 chr1B.!!$R2 2863
2 TraesCS1B01G287300 chr1A 474225081 474230135 5054 True 1506.500000 3546 92.073500 1 4821 4 chr1A.!!$R2 4820
3 TraesCS1B01G287300 chr1A 579950092 579950633 541 True 560.000000 560 86.581000 5014 5516 1 chr1A.!!$R1 502
4 TraesCS1B01G287300 chr1A 60735708 60737565 1857 False 430.000000 514 87.662500 2123 4174 2 chr1A.!!$F2 2051
5 TraesCS1B01G287300 chr1D 374470490 374475338 4848 True 1500.000000 2440 91.027250 1 4713 4 chr1D.!!$R3 4712
6 TraesCS1B01G287300 chr1D 62598921 62601179 2258 True 348.000000 503 86.518667 1311 4174 3 chr1D.!!$R2 2863
7 TraesCS1B01G287300 chr3A 716971804 716972340 536 True 501.000000 501 84.826000 5014 5516 1 chr3A.!!$R1 502
8 TraesCS1B01G287300 chr3A 620217994 620221660 3666 True 310.400000 617 90.183600 1087 4177 5 chr3A.!!$R2 3090
9 TraesCS1B01G287300 chr3D 476550380 476554078 3698 False 310.400000 608 90.457200 1087 4177 5 chr3D.!!$F1 3090
10 TraesCS1B01G287300 chr3B 572242978 572243521 543 True 531.000000 531 85.531000 5013 5516 1 chr3B.!!$R2 503
11 TraesCS1B01G287300 chr3B 635217265 635220891 3626 False 298.000000 601 90.450200 1114 4177 5 chr3B.!!$F1 3063
12 TraesCS1B01G287300 chr7A 493380313 493380853 540 False 562.000000 562 86.556000 5011 5516 1 chr7A.!!$F2 505
13 TraesCS1B01G287300 chr7A 8765200 8765743 543 True 542.000000 542 85.897000 5013 5516 1 chr7A.!!$R1 503
14 TraesCS1B01G287300 chr7A 625706192 625706731 539 False 470.000000 470 83.818000 5015 5516 1 chr7A.!!$F3 501
15 TraesCS1B01G287300 chr2B 65300145 65300687 542 True 545.000000 545 86.055000 5014 5516 1 chr2B.!!$R1 502
16 TraesCS1B01G287300 chr4D 386435672 386437956 2284 True 309.000000 477 86.696000 1893 4184 2 chr4D.!!$R1 2291
17 TraesCS1B01G287300 chr5B 20646410 20646947 537 True 475.000000 475 83.942000 5013 5516 1 chr5B.!!$R2 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 1005 0.250727 TCCCTTCTTGGTTTCAGCCG 60.251 55.0 0.00 0.0 0.00 5.52 F
1789 1882 0.111061 ATGCATGCACCCATCCGTAT 59.889 50.0 25.37 0.0 0.00 3.06 F
1790 1883 0.534877 TGCATGCACCCATCCGTATC 60.535 55.0 18.46 0.0 0.00 2.24 F
2941 5245 0.730265 GTGCGGTGTTCAAACTCACA 59.270 50.0 0.00 0.0 36.43 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 2592 0.037605 ACGGGTCAGTTCGGTTCATC 60.038 55.000 0.00 0.00 0.00 2.92 R
3230 5766 1.672881 CGAGAAGGGCCATTGTCATTC 59.327 52.381 24.72 2.14 37.16 2.67 R
3390 5938 2.095263 ACGGTTGATGGAATGAAAAGCG 60.095 45.455 4.03 4.03 44.65 4.68 R
4899 7854 0.167470 GCTCGAACCGGGTTTAAAGC 59.833 55.000 14.69 17.71 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 31 5.435686 AAGGACAATCTACATGCACCTTA 57.564 39.130 0.00 0.00 36.67 2.69
104 120 8.726988 AGAGATAAGCGTATGAAAGATAGAGAC 58.273 37.037 0.00 0.00 0.00 3.36
110 126 6.264292 AGCGTATGAAAGATAGAGACTGACAT 59.736 38.462 0.00 0.00 0.00 3.06
121 137 8.274322 AGATAGAGACTGACATATCATAGGAGG 58.726 40.741 0.00 0.00 33.22 4.30
139 155 8.859090 CATAGGAGGATAATAAAATGTGCCAAA 58.141 33.333 0.00 0.00 0.00 3.28
187 203 8.655970 GCAAAACCATTAATTGAGTTCCATAAC 58.344 33.333 0.00 0.00 35.72 1.89
189 205 9.705290 AAAACCATTAATTGAGTTCCATAACAC 57.295 29.630 0.00 0.00 38.12 3.32
190 206 8.415950 AACCATTAATTGAGTTCCATAACACA 57.584 30.769 0.00 0.00 38.12 3.72
194 210 5.376854 AATTGAGTTCCATAACACAGTGC 57.623 39.130 0.00 0.00 37.47 4.40
267 283 5.476091 TTTTAGTTTTTCCCCGCATGATT 57.524 34.783 0.00 0.00 0.00 2.57
271 287 5.675684 AGTTTTTCCCCGCATGATTATTT 57.324 34.783 0.00 0.00 0.00 1.40
273 289 6.106003 AGTTTTTCCCCGCATGATTATTTTC 58.894 36.000 0.00 0.00 0.00 2.29
308 324 9.772973 TTTGTCTAGATTTCTTTTAGTACTGCA 57.227 29.630 5.39 0.00 0.00 4.41
329 345 8.686334 ACTGCATTAAATCAAATAAATCGTCCT 58.314 29.630 0.00 0.00 0.00 3.85
340 359 9.056005 TCAAATAAATCGTCCTAAGATGGAATG 57.944 33.333 0.00 0.00 37.93 2.67
412 437 6.687081 TTTTTCAAACACTACCTGTACCTG 57.313 37.500 0.00 0.00 30.51 4.00
416 442 4.406326 TCAAACACTACCTGTACCTGTTCA 59.594 41.667 0.00 0.00 30.51 3.18
428 454 8.956426 ACCTGTACCTGTTCAATGTAAATATTG 58.044 33.333 0.00 0.00 38.97 1.90
429 455 8.405531 CCTGTACCTGTTCAATGTAAATATTGG 58.594 37.037 0.00 0.00 38.33 3.16
430 456 7.767261 TGTACCTGTTCAATGTAAATATTGGC 58.233 34.615 0.00 0.00 38.33 4.52
431 457 7.613801 TGTACCTGTTCAATGTAAATATTGGCT 59.386 33.333 0.00 0.00 38.33 4.75
432 458 7.100458 ACCTGTTCAATGTAAATATTGGCTC 57.900 36.000 0.00 0.00 38.33 4.70
434 460 7.342799 ACCTGTTCAATGTAAATATTGGCTCAT 59.657 33.333 0.00 0.00 38.33 2.90
435 461 7.650504 CCTGTTCAATGTAAATATTGGCTCATG 59.349 37.037 0.00 0.00 38.33 3.07
436 462 8.065473 TGTTCAATGTAAATATTGGCTCATGT 57.935 30.769 0.00 0.00 38.33 3.21
440 466 8.352201 TCAATGTAAATATTGGCTCATGTTAGC 58.648 33.333 0.00 0.00 41.99 3.09
451 487 5.059161 GGCTCATGTTAGCACTCATGATAA 58.941 41.667 14.62 0.00 45.74 1.75
454 490 6.426025 GCTCATGTTAGCACTCATGATAATCA 59.574 38.462 14.62 0.00 45.74 2.57
455 491 7.570875 GCTCATGTTAGCACTCATGATAATCAC 60.571 40.741 14.62 0.00 45.74 3.06
456 492 6.421801 TCATGTTAGCACTCATGATAATCACG 59.578 38.462 11.65 0.00 43.29 4.35
462 498 5.523916 AGCACTCATGATAATCACGGTTTAC 59.476 40.000 0.00 0.00 0.00 2.01
575 615 1.992277 CCTCCCACCCTCCTCACTG 60.992 68.421 0.00 0.00 0.00 3.66
721 765 1.275291 GTAACTGCACCCACTCTGCTA 59.725 52.381 0.00 0.00 35.53 3.49
847 891 2.496070 TGGTGCTGGCTGTTACTAGTAG 59.504 50.000 2.23 0.00 0.00 2.57
866 910 4.809426 AGTAGTAATTTACTGGCGTGCATC 59.191 41.667 17.47 0.00 39.81 3.91
867 911 2.943033 AGTAATTTACTGGCGTGCATCC 59.057 45.455 8.27 0.00 37.69 3.51
868 912 1.832883 AATTTACTGGCGTGCATCCA 58.167 45.000 9.83 9.83 0.00 3.41
869 913 2.057137 ATTTACTGGCGTGCATCCAT 57.943 45.000 10.55 5.13 32.37 3.41
931 975 2.336088 GCCATTGCTTGCGTGTGT 59.664 55.556 0.00 0.00 33.53 3.72
932 976 1.300080 GCCATTGCTTGCGTGTGTT 60.300 52.632 0.00 0.00 33.53 3.32
933 977 0.875474 GCCATTGCTTGCGTGTGTTT 60.875 50.000 0.00 0.00 33.53 2.83
934 978 1.601663 GCCATTGCTTGCGTGTGTTTA 60.602 47.619 0.00 0.00 33.53 2.01
935 979 2.050691 CCATTGCTTGCGTGTGTTTAC 58.949 47.619 0.00 0.00 0.00 2.01
936 980 2.542618 CCATTGCTTGCGTGTGTTTACA 60.543 45.455 0.00 0.00 0.00 2.41
937 981 3.307674 CATTGCTTGCGTGTGTTTACAT 58.692 40.909 0.00 0.00 39.39 2.29
938 982 3.428746 TTGCTTGCGTGTGTTTACATT 57.571 38.095 0.00 0.00 39.39 2.71
939 983 2.725490 TGCTTGCGTGTGTTTACATTG 58.275 42.857 0.00 0.00 39.39 2.82
940 984 2.050691 GCTTGCGTGTGTTTACATTGG 58.949 47.619 0.00 0.00 39.39 3.16
941 985 2.660490 CTTGCGTGTGTTTACATTGGG 58.340 47.619 0.00 0.00 39.39 4.12
942 986 1.681538 TGCGTGTGTTTACATTGGGT 58.318 45.000 0.00 0.00 39.39 4.51
943 987 1.604755 TGCGTGTGTTTACATTGGGTC 59.395 47.619 0.00 0.00 39.39 4.46
944 988 1.068816 GCGTGTGTTTACATTGGGTCC 60.069 52.381 0.00 0.00 39.39 4.46
945 989 1.538075 CGTGTGTTTACATTGGGTCCC 59.462 52.381 0.00 0.00 39.39 4.46
957 1001 1.227249 TGGGTCCCTTCTTGGTTTCA 58.773 50.000 10.00 0.00 0.00 2.69
958 1002 1.144913 TGGGTCCCTTCTTGGTTTCAG 59.855 52.381 10.00 0.00 0.00 3.02
959 1003 1.248486 GGTCCCTTCTTGGTTTCAGC 58.752 55.000 0.00 0.00 0.00 4.26
961 1005 0.250727 TCCCTTCTTGGTTTCAGCCG 60.251 55.000 0.00 0.00 0.00 5.52
962 1006 1.581447 CCTTCTTGGTTTCAGCCGC 59.419 57.895 0.00 0.00 0.00 6.53
965 1009 1.781025 TTCTTGGTTTCAGCCGCGTG 61.781 55.000 4.92 0.00 0.00 5.34
966 1010 3.879351 CTTGGTTTCAGCCGCGTGC 62.879 63.158 4.92 8.57 41.71 5.34
990 1034 2.710760 CGTAGCGTAGAGAGAAGCAAG 58.289 52.381 0.00 0.00 0.00 4.01
992 1036 0.820871 AGCGTAGAGAGAAGCAAGGG 59.179 55.000 0.00 0.00 0.00 3.95
993 1037 0.818296 GCGTAGAGAGAAGCAAGGGA 59.182 55.000 0.00 0.00 0.00 4.20
1208 1270 0.828677 GCCTCCAACCAGGTACGTAT 59.171 55.000 0.00 0.00 39.02 3.06
1240 1302 0.528684 CATCTTCTTCCCCGTCGCTC 60.529 60.000 0.00 0.00 0.00 5.03
1267 1334 0.818296 AAAGGAGACCTCATCGTCGG 59.182 55.000 0.00 0.00 37.85 4.79
1271 1338 3.823330 GACCTCATCGTCGGCGGT 61.823 66.667 10.62 0.00 38.89 5.68
1537 1613 0.896019 ACTCCACTCCACTCCACTCG 60.896 60.000 0.00 0.00 0.00 4.18
1538 1614 1.599606 CTCCACTCCACTCCACTCGG 61.600 65.000 0.00 0.00 0.00 4.63
1539 1615 2.262915 CACTCCACTCCACTCGGC 59.737 66.667 0.00 0.00 0.00 5.54
1540 1616 2.118513 ACTCCACTCCACTCGGCT 59.881 61.111 0.00 0.00 0.00 5.52
1541 1617 1.979693 ACTCCACTCCACTCGGCTC 60.980 63.158 0.00 0.00 0.00 4.70
1542 1618 2.680352 TCCACTCCACTCGGCTCC 60.680 66.667 0.00 0.00 0.00 4.70
1543 1619 4.135153 CCACTCCACTCGGCTCCG 62.135 72.222 1.14 1.14 41.35 4.63
1544 1620 4.803426 CACTCCACTCGGCTCCGC 62.803 72.222 2.96 0.00 39.59 5.54
1546 1622 4.200283 CTCCACTCGGCTCCGCTC 62.200 72.222 2.96 0.00 39.59 5.03
1579 1655 6.414987 GTCAGTTTTTCAGTTTCCATCTTTCG 59.585 38.462 0.00 0.00 0.00 3.46
1582 1658 5.432885 TTTTCAGTTTCCATCTTTCGTCC 57.567 39.130 0.00 0.00 0.00 4.79
1609 1685 2.380084 TCCTGCATACGTTTCCAGTC 57.620 50.000 0.00 0.00 0.00 3.51
1643 1726 1.687297 GAACTGGATCCCTCCGTCCC 61.687 65.000 9.90 0.00 45.37 4.46
1647 1734 2.609920 GATCCCTCCGTCCCCTCT 59.390 66.667 0.00 0.00 0.00 3.69
1648 1735 1.834822 GATCCCTCCGTCCCCTCTG 60.835 68.421 0.00 0.00 0.00 3.35
1649 1736 3.396822 ATCCCTCCGTCCCCTCTGG 62.397 68.421 0.00 0.00 0.00 3.86
1650 1737 4.075793 CCCTCCGTCCCCTCTGGA 62.076 72.222 0.00 0.00 42.41 3.86
1671 1758 2.654863 TGATCGTGATGCTCTGGAGTA 58.345 47.619 0.00 0.00 0.00 2.59
1744 1836 0.599728 TGAAGCAAAACCGCAATGGC 60.600 50.000 0.00 0.00 43.94 4.40
1786 1879 2.725641 CATGCATGCACCCATCCG 59.274 61.111 25.37 1.67 0.00 4.18
1787 1880 2.122797 CATGCATGCACCCATCCGT 61.123 57.895 25.37 0.38 0.00 4.69
1788 1881 0.818852 CATGCATGCACCCATCCGTA 60.819 55.000 25.37 0.00 0.00 4.02
1789 1882 0.111061 ATGCATGCACCCATCCGTAT 59.889 50.000 25.37 0.00 0.00 3.06
1790 1883 0.534877 TGCATGCACCCATCCGTATC 60.535 55.000 18.46 0.00 0.00 2.24
1883 2313 8.758633 ATTGAATTGATTGCTTTTCTCTCTTG 57.241 30.769 0.00 0.00 0.00 3.02
2023 2485 1.815003 GCAAGGTTGTTCATCCCTCTG 59.185 52.381 0.00 0.00 0.00 3.35
2028 2490 2.827921 GGTTGTTCATCCCTCTGCATTT 59.172 45.455 0.00 0.00 0.00 2.32
2031 2549 3.084039 TGTTCATCCCTCTGCATTTCAC 58.916 45.455 0.00 0.00 0.00 3.18
2035 2553 4.454678 TCATCCCTCTGCATTTCACATAC 58.545 43.478 0.00 0.00 0.00 2.39
2036 2554 2.905075 TCCCTCTGCATTTCACATACG 58.095 47.619 0.00 0.00 0.00 3.06
2039 2557 3.555956 CCCTCTGCATTTCACATACGTAC 59.444 47.826 0.00 0.00 0.00 3.67
2057 2575 6.216801 ACGTACATCAAGTGCTTTCCTATA 57.783 37.500 0.00 0.00 0.00 1.31
2058 2576 6.040878 ACGTACATCAAGTGCTTTCCTATAC 58.959 40.000 0.00 0.00 0.00 1.47
2062 2580 5.824624 ACATCAAGTGCTTTCCTATACCATG 59.175 40.000 0.00 0.00 0.00 3.66
2064 2582 6.553953 TCAAGTGCTTTCCTATACCATGTA 57.446 37.500 0.00 0.00 0.00 2.29
2070 2588 6.017934 GTGCTTTCCTATACCATGTATGTGTG 60.018 42.308 0.00 0.00 0.00 3.82
2071 2589 5.470098 GCTTTCCTATACCATGTATGTGTGG 59.530 44.000 0.00 0.00 41.35 4.17
2073 2591 6.816616 TTCCTATACCATGTATGTGTGGAA 57.183 37.500 0.00 0.00 38.86 3.53
2074 2592 6.419484 TCCTATACCATGTATGTGTGGAAG 57.581 41.667 0.00 0.00 38.86 3.46
2078 2596 4.842531 ACCATGTATGTGTGGAAGATGA 57.157 40.909 0.00 0.00 38.86 2.92
2080 2598 4.943705 ACCATGTATGTGTGGAAGATGAAC 59.056 41.667 0.00 0.00 38.86 3.18
2081 2599 4.336433 CCATGTATGTGTGGAAGATGAACC 59.664 45.833 0.00 0.00 37.72 3.62
2098 2616 1.070105 CCGAACTGACCCGTGGAAA 59.930 57.895 0.00 0.00 0.00 3.13
2100 2618 1.519408 CGAACTGACCCGTGGAAATT 58.481 50.000 0.00 0.00 0.00 1.82
2102 2620 3.068560 CGAACTGACCCGTGGAAATTAA 58.931 45.455 0.00 0.00 0.00 1.40
2104 2622 4.612033 CGAACTGACCCGTGGAAATTAAAC 60.612 45.833 0.00 0.00 0.00 2.01
2105 2623 2.809696 ACTGACCCGTGGAAATTAAACG 59.190 45.455 0.00 1.62 37.07 3.60
2108 2626 2.153645 ACCCGTGGAAATTAAACGTCC 58.846 47.619 0.00 0.00 35.59 4.79
2110 2628 3.007831 ACCCGTGGAAATTAAACGTCCTA 59.992 43.478 0.00 0.00 35.59 2.94
2111 2629 3.371898 CCCGTGGAAATTAAACGTCCTAC 59.628 47.826 0.00 0.00 35.59 3.18
2149 2680 2.715046 TCTACTACATCAACGACCGGT 58.285 47.619 6.92 6.92 0.00 5.28
2229 2760 1.263356 CCTCCTTCCACAACTACCGA 58.737 55.000 0.00 0.00 0.00 4.69
2230 2761 1.067071 CCTCCTTCCACAACTACCGAC 60.067 57.143 0.00 0.00 0.00 4.79
2337 3062 3.897122 AAGCACTCGGGCCCCAAA 61.897 61.111 18.66 0.13 0.00 3.28
2358 3083 1.565305 GCCTGATGCTCTACTTCACG 58.435 55.000 0.00 0.00 36.87 4.35
2370 3095 4.652131 TTCACGGGCGCCACCAAT 62.652 61.111 30.85 4.88 42.05 3.16
2424 3316 5.049828 ACCGTGTAAGTACTACAAACAACC 58.950 41.667 0.00 0.00 42.23 3.77
2431 3387 4.891260 AGTACTACAAACAACCTACCTGC 58.109 43.478 0.00 0.00 0.00 4.85
2605 3899 1.604593 CACCTCCTGGCCAACTTGG 60.605 63.158 7.01 4.27 41.55 3.61
2620 3914 4.500716 CCAACTTGGTTCACAATTGGTACC 60.501 45.833 10.83 4.43 38.65 3.34
2784 5055 9.494271 GCACTATGAATTTCAATACTCCTCATA 57.506 33.333 2.68 0.00 0.00 2.15
2790 5061 9.241919 TGAATTTCAATACTCCTCATAAGCAAA 57.758 29.630 0.00 0.00 0.00 3.68
2822 5093 2.039613 CCCATCCTTCATTCCCTAGCTC 59.960 54.545 0.00 0.00 0.00 4.09
2939 5243 1.674359 ATGTGCGGTGTTCAAACTCA 58.326 45.000 0.00 0.00 0.00 3.41
2941 5245 0.730265 GTGCGGTGTTCAAACTCACA 59.270 50.000 0.00 0.00 36.43 3.58
3085 5616 4.083484 CGGAGTTCACATCAAGTAAAACCC 60.083 45.833 0.00 0.00 0.00 4.11
3230 5766 2.032549 CCTTCTGTTTGAGTGCTTGACG 60.033 50.000 0.00 0.00 0.00 4.35
3250 5786 1.672881 GAATGACAATGGCCCTTCTCG 59.327 52.381 0.00 0.00 0.00 4.04
3460 6008 7.778382 ACGCTAATTCCAAAGGGTTTATATTCT 59.222 33.333 0.00 0.00 35.58 2.40
3539 6089 8.147704 TGCCGTTATGATAAGATGATCAGTTTA 58.852 33.333 0.09 2.94 39.18 2.01
3623 6176 6.313658 TGTTCATGCACTGTAGTTGCTTATAG 59.686 38.462 0.00 0.00 0.00 1.31
3625 6178 6.042777 TCATGCACTGTAGTTGCTTATAGTC 58.957 40.000 0.00 0.00 0.00 2.59
3626 6179 5.400066 TGCACTGTAGTTGCTTATAGTCA 57.600 39.130 0.00 0.00 0.00 3.41
3781 6712 1.497161 AGTACATCTACCTGGTGGCC 58.503 55.000 10.23 0.00 36.63 5.36
4420 7370 3.006430 TGTCCAACTTCGTCAAGCAGATA 59.994 43.478 0.00 0.00 32.09 1.98
4528 7478 2.509111 CACTAGCGCACGCCATCA 60.509 61.111 11.47 0.00 43.17 3.07
4532 7482 3.664025 TAGCGCACGCCATCAAGCT 62.664 57.895 11.47 0.00 43.17 3.74
4591 7541 1.938577 GTCGATCCGTGCACTAGAGTA 59.061 52.381 16.19 0.00 0.00 2.59
4597 7550 2.490903 TCCGTGCACTAGAGTACCTTTC 59.509 50.000 16.19 0.00 0.00 2.62
4684 7637 3.553922 GCTAGCATAGTAGAACAGCCCTG 60.554 52.174 10.63 0.00 41.93 4.45
4704 7657 1.128692 GCGTGTTTGTCACTGGCTATC 59.871 52.381 0.00 0.00 44.16 2.08
4706 7659 3.067106 CGTGTTTGTCACTGGCTATCTT 58.933 45.455 0.00 0.00 44.16 2.40
4719 7672 8.375506 TCACTGGCTATCTTATATAAGTTTGGG 58.624 37.037 19.58 9.60 34.93 4.12
4751 7706 2.292828 CCTTTTGGAAGAGCTTGGGA 57.707 50.000 0.00 0.00 44.07 4.37
4770 7725 6.194285 TGGGATCATTTCCGTGGATTTATA 57.806 37.500 0.00 0.00 46.52 0.98
4817 7772 4.023536 GGCTGATTTCCAAAAGTTCACGTA 60.024 41.667 0.00 0.00 0.00 3.57
4821 7776 6.954944 TGATTTCCAAAAGTTCACGTAAGAG 58.045 36.000 0.00 0.00 43.62 2.85
4822 7777 6.540914 TGATTTCCAAAAGTTCACGTAAGAGT 59.459 34.615 0.00 0.00 43.62 3.24
4823 7778 7.711772 TGATTTCCAAAAGTTCACGTAAGAGTA 59.288 33.333 0.00 0.00 43.62 2.59
4824 7779 6.833342 TTCCAAAAGTTCACGTAAGAGTAC 57.167 37.500 0.00 0.00 43.62 2.73
4825 7780 6.152932 TCCAAAAGTTCACGTAAGAGTACT 57.847 37.500 0.00 0.00 39.94 2.73
4826 7781 6.211515 TCCAAAAGTTCACGTAAGAGTACTC 58.788 40.000 15.41 15.41 37.56 2.59
4827 7782 5.404667 CCAAAAGTTCACGTAAGAGTACTCC 59.595 44.000 19.38 3.45 37.56 3.85
4828 7783 4.780275 AAGTTCACGTAAGAGTACTCCC 57.220 45.455 19.38 6.97 37.56 4.30
4829 7784 4.031636 AGTTCACGTAAGAGTACTCCCT 57.968 45.455 19.38 9.59 33.75 4.20
4830 7785 4.009002 AGTTCACGTAAGAGTACTCCCTC 58.991 47.826 19.38 8.69 33.75 4.30
4831 7786 2.996631 TCACGTAAGAGTACTCCCTCC 58.003 52.381 19.38 4.52 43.62 4.30
4832 7787 1.669779 CACGTAAGAGTACTCCCTCCG 59.330 57.143 19.38 17.27 43.62 4.63
4833 7788 1.280421 ACGTAAGAGTACTCCCTCCGT 59.720 52.381 19.38 17.86 43.62 4.69
4834 7789 1.669779 CGTAAGAGTACTCCCTCCGTG 59.330 57.143 19.38 0.00 43.02 4.94
4835 7790 2.720915 GTAAGAGTACTCCCTCCGTGT 58.279 52.381 19.38 0.00 31.53 4.49
4836 7791 1.546961 AAGAGTACTCCCTCCGTGTG 58.453 55.000 19.38 0.00 31.53 3.82
4837 7792 0.404812 AGAGTACTCCCTCCGTGTGT 59.595 55.000 19.38 0.00 31.53 3.72
4838 7793 1.632409 AGAGTACTCCCTCCGTGTGTA 59.368 52.381 19.38 0.00 31.53 2.90
4839 7794 2.015587 GAGTACTCCCTCCGTGTGTAG 58.984 57.143 12.13 0.00 0.00 2.74
4840 7795 1.353694 AGTACTCCCTCCGTGTGTAGT 59.646 52.381 0.00 0.00 0.00 2.73
4841 7796 1.471684 GTACTCCCTCCGTGTGTAGTG 59.528 57.143 0.00 0.00 0.00 2.74
4842 7797 0.178970 ACTCCCTCCGTGTGTAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
4843 7798 0.526662 CTCCCTCCGTGTGTAGTGTC 59.473 60.000 0.00 0.00 0.00 3.67
4844 7799 0.178984 TCCCTCCGTGTGTAGTGTCA 60.179 55.000 0.00 0.00 0.00 3.58
4845 7800 0.677288 CCCTCCGTGTGTAGTGTCAA 59.323 55.000 0.00 0.00 0.00 3.18
4846 7801 1.069513 CCCTCCGTGTGTAGTGTCAAA 59.930 52.381 0.00 0.00 0.00 2.69
4847 7802 2.484065 CCCTCCGTGTGTAGTGTCAAAA 60.484 50.000 0.00 0.00 0.00 2.44
4848 7803 3.199677 CCTCCGTGTGTAGTGTCAAAAA 58.800 45.455 0.00 0.00 0.00 1.94
4849 7804 3.001939 CCTCCGTGTGTAGTGTCAAAAAC 59.998 47.826 0.00 0.00 0.00 2.43
4850 7805 2.604011 TCCGTGTGTAGTGTCAAAAACG 59.396 45.455 0.00 0.00 0.00 3.60
4851 7806 2.359598 CGTGTGTAGTGTCAAAAACGC 58.640 47.619 0.00 0.00 38.74 4.84
4853 7808 3.604392 GTGTGTAGTGTCAAAAACGCTC 58.396 45.455 0.00 0.00 45.69 5.03
4854 7809 3.308866 GTGTGTAGTGTCAAAAACGCTCT 59.691 43.478 0.00 0.00 45.69 4.09
4855 7810 3.936453 TGTGTAGTGTCAAAAACGCTCTT 59.064 39.130 0.00 0.00 45.69 2.85
4856 7811 5.005971 GTGTGTAGTGTCAAAAACGCTCTTA 59.994 40.000 0.00 0.00 45.69 2.10
4857 7812 5.756347 TGTGTAGTGTCAAAAACGCTCTTAT 59.244 36.000 0.00 0.00 45.69 1.73
4858 7813 6.924612 TGTGTAGTGTCAAAAACGCTCTTATA 59.075 34.615 0.00 0.00 45.69 0.98
4859 7814 7.095940 TGTGTAGTGTCAAAAACGCTCTTATAC 60.096 37.037 0.00 0.00 45.69 1.47
4860 7815 6.924612 TGTAGTGTCAAAAACGCTCTTATACA 59.075 34.615 0.00 0.00 45.69 2.29
4861 7816 6.224420 AGTGTCAAAAACGCTCTTATACAC 57.776 37.500 0.00 0.00 45.69 2.90
4862 7817 5.989777 AGTGTCAAAAACGCTCTTATACACT 59.010 36.000 0.00 0.00 45.69 3.55
4863 7818 7.149973 AGTGTCAAAAACGCTCTTATACACTA 58.850 34.615 0.00 0.00 45.69 2.74
4864 7819 7.654520 AGTGTCAAAAACGCTCTTATACACTAA 59.345 33.333 0.00 0.00 45.69 2.24
4865 7820 8.440833 GTGTCAAAAACGCTCTTATACACTAAT 58.559 33.333 0.00 0.00 35.42 1.73
4866 7821 9.642327 TGTCAAAAACGCTCTTATACACTAATA 57.358 29.630 0.00 0.00 0.00 0.98
4873 7828 9.865321 AACGCTCTTATACACTAATAGAAAACA 57.135 29.630 0.00 0.00 0.00 2.83
4874 7829 9.517609 ACGCTCTTATACACTAATAGAAAACAG 57.482 33.333 0.00 0.00 0.00 3.16
4875 7830 8.969267 CGCTCTTATACACTAATAGAAAACAGG 58.031 37.037 0.00 0.00 0.00 4.00
4876 7831 9.262358 GCTCTTATACACTAATAGAAAACAGGG 57.738 37.037 0.00 0.00 0.00 4.45
4882 7837 7.284919 ACACTAATAGAAAACAGGGTTTTGG 57.715 36.000 11.41 0.00 0.00 3.28
4883 7838 6.837048 ACACTAATAGAAAACAGGGTTTTGGT 59.163 34.615 11.41 2.45 0.00 3.67
4884 7839 7.013942 ACACTAATAGAAAACAGGGTTTTGGTC 59.986 37.037 11.41 0.00 0.00 4.02
4885 7840 7.230712 CACTAATAGAAAACAGGGTTTTGGTCT 59.769 37.037 11.41 5.94 0.00 3.85
4886 7841 6.405278 AATAGAAAACAGGGTTTTGGTCTG 57.595 37.500 11.41 0.00 34.91 3.51
4887 7842 3.031013 AGAAAACAGGGTTTTGGTCTGG 58.969 45.455 11.41 0.00 33.19 3.86
4888 7843 1.788229 AAACAGGGTTTTGGTCTGGG 58.212 50.000 0.00 0.00 33.19 4.45
4889 7844 0.759060 AACAGGGTTTTGGTCTGGGC 60.759 55.000 0.00 0.00 33.19 5.36
4890 7845 1.908299 CAGGGTTTTGGTCTGGGCC 60.908 63.158 0.00 0.00 0.00 5.80
4891 7846 2.200092 GGGTTTTGGTCTGGGCCA 59.800 61.111 5.85 5.85 36.62 5.36
4892 7847 1.908299 GGGTTTTGGTCTGGGCCAG 60.908 63.158 28.01 28.01 40.01 4.85
4893 7848 1.152830 GGTTTTGGTCTGGGCCAGA 59.847 57.895 32.01 32.01 40.01 3.86
4894 7849 0.251787 GGTTTTGGTCTGGGCCAGAT 60.252 55.000 36.94 0.00 42.73 2.90
4895 7850 1.177401 GTTTTGGTCTGGGCCAGATC 58.823 55.000 36.94 35.97 42.73 2.75
4897 7852 3.731547 TGGTCTGGGCCAGATCAG 58.268 61.111 39.18 14.36 45.29 2.90
4898 7853 1.080907 TGGTCTGGGCCAGATCAGA 59.919 57.895 39.18 22.40 45.29 3.27
4899 7854 0.979709 TGGTCTGGGCCAGATCAGAG 60.980 60.000 39.18 12.82 45.29 3.35
4900 7855 1.145819 GTCTGGGCCAGATCAGAGC 59.854 63.158 36.94 20.35 42.73 4.09
4901 7856 1.002662 TCTGGGCCAGATCAGAGCT 59.997 57.895 32.01 0.00 35.39 4.09
4902 7857 0.619832 TCTGGGCCAGATCAGAGCTT 60.620 55.000 32.01 0.00 35.39 3.74
4903 7858 0.255318 CTGGGCCAGATCAGAGCTTT 59.745 55.000 29.96 0.00 32.44 3.51
4904 7859 1.487976 CTGGGCCAGATCAGAGCTTTA 59.512 52.381 29.96 0.00 32.44 1.85
4905 7860 1.915489 TGGGCCAGATCAGAGCTTTAA 59.085 47.619 0.00 0.00 0.00 1.52
4906 7861 2.308570 TGGGCCAGATCAGAGCTTTAAA 59.691 45.455 0.00 0.00 0.00 1.52
4907 7862 2.685388 GGGCCAGATCAGAGCTTTAAAC 59.315 50.000 4.39 0.00 0.00 2.01
4908 7863 2.685388 GGCCAGATCAGAGCTTTAAACC 59.315 50.000 0.00 0.00 0.00 3.27
4909 7864 2.685388 GCCAGATCAGAGCTTTAAACCC 59.315 50.000 0.00 0.00 0.00 4.11
4910 7865 2.939103 CCAGATCAGAGCTTTAAACCCG 59.061 50.000 0.00 0.00 0.00 5.28
4911 7866 2.939103 CAGATCAGAGCTTTAAACCCGG 59.061 50.000 0.00 0.00 0.00 5.73
4912 7867 2.572104 AGATCAGAGCTTTAAACCCGGT 59.428 45.455 0.00 0.00 0.00 5.28
4913 7868 2.943036 TCAGAGCTTTAAACCCGGTT 57.057 45.000 0.00 0.00 0.00 4.44
4914 7869 2.774687 TCAGAGCTTTAAACCCGGTTC 58.225 47.619 2.46 0.00 0.00 3.62
4915 7870 1.463444 CAGAGCTTTAAACCCGGTTCG 59.537 52.381 2.46 0.00 0.00 3.95
4916 7871 1.345415 AGAGCTTTAAACCCGGTTCGA 59.655 47.619 2.46 0.00 0.00 3.71
4917 7872 1.730612 GAGCTTTAAACCCGGTTCGAG 59.269 52.381 2.46 3.49 0.00 4.04
4918 7873 0.167470 GCTTTAAACCCGGTTCGAGC 59.833 55.000 2.46 9.61 0.00 5.03
4919 7874 1.515081 CTTTAAACCCGGTTCGAGCA 58.485 50.000 2.46 0.00 0.00 4.26
4920 7875 1.874872 CTTTAAACCCGGTTCGAGCAA 59.125 47.619 2.46 0.00 0.00 3.91
4921 7876 1.228533 TTAAACCCGGTTCGAGCAAC 58.771 50.000 2.46 0.00 0.00 4.17
4928 7883 4.285851 GTTCGAGCAACCAGGGAG 57.714 61.111 0.00 0.00 0.00 4.30
4929 7884 2.035442 GTTCGAGCAACCAGGGAGC 61.035 63.158 0.00 0.00 0.00 4.70
4930 7885 3.254024 TTCGAGCAACCAGGGAGCC 62.254 63.158 1.96 0.00 0.00 4.70
4932 7887 4.785453 GAGCAACCAGGGAGCCGG 62.785 72.222 0.00 0.00 0.00 6.13
4952 7907 3.075005 GGGCCTCGGCAGACACTA 61.075 66.667 10.51 0.00 44.11 2.74
4953 7908 2.496817 GGCCTCGGCAGACACTAG 59.503 66.667 10.51 0.00 44.11 2.57
4954 7909 2.352032 GGCCTCGGCAGACACTAGT 61.352 63.158 10.51 0.00 44.11 2.57
4955 7910 1.139947 GCCTCGGCAGACACTAGTC 59.860 63.158 2.41 0.00 45.31 2.59
4956 7911 1.810532 CCTCGGCAGACACTAGTCC 59.189 63.158 0.00 0.00 46.15 3.85
4957 7912 1.668101 CCTCGGCAGACACTAGTCCC 61.668 65.000 0.00 0.00 46.15 4.46
4958 7913 1.994507 CTCGGCAGACACTAGTCCCG 61.995 65.000 0.00 0.80 46.15 5.14
4959 7914 2.893398 GGCAGACACTAGTCCCGG 59.107 66.667 0.00 0.00 46.15 5.73
4960 7915 1.982938 GGCAGACACTAGTCCCGGT 60.983 63.158 0.00 0.00 46.15 5.28
4961 7916 1.542187 GGCAGACACTAGTCCCGGTT 61.542 60.000 0.00 0.00 46.15 4.44
4962 7917 0.108756 GCAGACACTAGTCCCGGTTC 60.109 60.000 0.00 0.00 46.15 3.62
4963 7918 0.170561 CAGACACTAGTCCCGGTTCG 59.829 60.000 0.00 0.00 46.15 3.95
4964 7919 0.251077 AGACACTAGTCCCGGTTCGT 60.251 55.000 0.00 0.00 46.15 3.85
4965 7920 0.169894 GACACTAGTCCCGGTTCGTC 59.830 60.000 0.00 0.00 38.89 4.20
4966 7921 0.251077 ACACTAGTCCCGGTTCGTCT 60.251 55.000 0.00 0.00 0.00 4.18
4967 7922 0.170561 CACTAGTCCCGGTTCGTCTG 59.829 60.000 0.00 0.00 0.00 3.51
4968 7923 0.037303 ACTAGTCCCGGTTCGTCTGA 59.963 55.000 0.00 0.00 0.00 3.27
4969 7924 0.450983 CTAGTCCCGGTTCGTCTGAC 59.549 60.000 0.00 0.00 0.00 3.51
4970 7925 0.962356 TAGTCCCGGTTCGTCTGACC 60.962 60.000 0.00 0.00 0.00 4.02
4971 7926 2.993264 TCCCGGTTCGTCTGACCC 60.993 66.667 0.00 0.00 33.49 4.46
4972 7927 4.078516 CCCGGTTCGTCTGACCCC 62.079 72.222 0.00 0.00 33.49 4.95
4973 7928 2.995574 CCGGTTCGTCTGACCCCT 60.996 66.667 1.55 0.00 33.49 4.79
4974 7929 2.580601 CCGGTTCGTCTGACCCCTT 61.581 63.158 1.55 0.00 33.49 3.95
4975 7930 1.370064 CGGTTCGTCTGACCCCTTT 59.630 57.895 1.55 0.00 33.49 3.11
4976 7931 0.604578 CGGTTCGTCTGACCCCTTTA 59.395 55.000 1.55 0.00 33.49 1.85
4977 7932 1.403780 CGGTTCGTCTGACCCCTTTAG 60.404 57.143 1.55 0.00 33.49 1.85
4978 7933 1.622312 GGTTCGTCTGACCCCTTTAGT 59.378 52.381 1.55 0.00 0.00 2.24
4979 7934 2.353505 GGTTCGTCTGACCCCTTTAGTC 60.354 54.545 1.55 0.00 34.72 2.59
4980 7935 1.553706 TCGTCTGACCCCTTTAGTCC 58.446 55.000 1.55 0.00 33.09 3.85
4981 7936 0.535797 CGTCTGACCCCTTTAGTCCC 59.464 60.000 1.55 0.00 33.09 4.46
4982 7937 0.535797 GTCTGACCCCTTTAGTCCCG 59.464 60.000 0.00 0.00 33.09 5.14
4983 7938 0.616679 TCTGACCCCTTTAGTCCCGG 60.617 60.000 0.00 0.00 33.09 5.73
4984 7939 0.908180 CTGACCCCTTTAGTCCCGGT 60.908 60.000 0.00 0.00 33.09 5.28
4985 7940 0.474273 TGACCCCTTTAGTCCCGGTT 60.474 55.000 0.00 0.00 33.09 4.44
4986 7941 0.251354 GACCCCTTTAGTCCCGGTTC 59.749 60.000 0.00 0.00 0.00 3.62
4987 7942 1.203441 ACCCCTTTAGTCCCGGTTCC 61.203 60.000 0.00 0.00 0.00 3.62
4988 7943 1.202769 CCCCTTTAGTCCCGGTTCCA 61.203 60.000 0.00 0.00 0.00 3.53
4989 7944 0.252197 CCCTTTAGTCCCGGTTCCAG 59.748 60.000 0.00 0.00 0.00 3.86
4990 7945 1.272807 CCTTTAGTCCCGGTTCCAGA 58.727 55.000 0.00 0.00 0.00 3.86
4991 7946 1.066358 CCTTTAGTCCCGGTTCCAGAC 60.066 57.143 0.00 0.00 0.00 3.51
4992 7947 1.621814 CTTTAGTCCCGGTTCCAGACA 59.378 52.381 9.96 0.00 32.82 3.41
4993 7948 0.971386 TTAGTCCCGGTTCCAGACAC 59.029 55.000 9.96 0.00 32.82 3.67
4994 7949 1.246056 TAGTCCCGGTTCCAGACACG 61.246 60.000 9.96 0.00 32.82 4.49
4995 7950 2.203523 TCCCGGTTCCAGACACGA 60.204 61.111 0.00 0.00 0.00 4.35
4996 7951 1.833492 TCCCGGTTCCAGACACGAA 60.833 57.895 0.00 0.00 0.00 3.85
4997 7952 1.666872 CCCGGTTCCAGACACGAAC 60.667 63.158 0.00 0.00 39.12 3.95
5000 7955 3.946907 GTTCCAGACACGAACCGG 58.053 61.111 0.00 0.00 34.75 5.28
5001 7956 1.666872 GTTCCAGACACGAACCGGG 60.667 63.158 6.32 0.00 34.75 5.73
5002 7957 1.833492 TTCCAGACACGAACCGGGA 60.833 57.895 6.32 0.00 32.98 5.14
5003 7958 2.048503 CCAGACACGAACCGGGAC 60.049 66.667 6.32 0.00 32.98 4.46
5004 7959 2.571216 CCAGACACGAACCGGGACT 61.571 63.158 6.32 0.00 35.52 3.85
5005 7960 1.246056 CCAGACACGAACCGGGACTA 61.246 60.000 6.32 0.00 32.61 2.59
5006 7961 0.599558 CAGACACGAACCGGGACTAA 59.400 55.000 6.32 0.00 32.61 2.24
5007 7962 1.000060 CAGACACGAACCGGGACTAAA 60.000 52.381 6.32 0.00 32.61 1.85
5008 7963 1.271656 AGACACGAACCGGGACTAAAG 59.728 52.381 6.32 0.00 33.23 1.85
5009 7964 1.270550 GACACGAACCGGGACTAAAGA 59.729 52.381 6.32 0.00 32.98 2.52
5045 8000 7.156000 TGTCTAAAAGAACCACATATCGAACA 58.844 34.615 0.00 0.00 0.00 3.18
5081 8036 3.846588 AGACCATCCCTAAGTCACATTGT 59.153 43.478 0.00 0.00 32.82 2.71
5260 8259 5.411669 GTGGCGGCTGTAGCTAATAATAATT 59.588 40.000 11.43 0.00 41.70 1.40
5268 8267 7.280205 GCTGTAGCTAATAATAATTGGGCGTAT 59.720 37.037 0.00 0.00 38.21 3.06
5297 8297 3.559069 CAGTACATGCATGGATTCCCTT 58.441 45.455 29.41 9.36 0.00 3.95
5302 8302 4.035112 ACATGCATGGATTCCCTTGAATT 58.965 39.130 29.41 1.17 41.30 2.17
5332 8332 2.225019 GCATGCAGCGCAGAAATAGTAT 59.775 45.455 14.21 0.00 43.65 2.12
5333 8333 3.304257 GCATGCAGCGCAGAAATAGTATT 60.304 43.478 14.21 0.00 43.65 1.89
5357 8357 5.305644 TCTCTCTCCCTTGATTATTAGCACC 59.694 44.000 0.00 0.00 0.00 5.01
5359 8359 4.044308 TCTCCCTTGATTATTAGCACCCA 58.956 43.478 0.00 0.00 0.00 4.51
5446 8448 6.651225 GCAGTCCAAAGAAGTATACAGTCTTT 59.349 38.462 20.59 20.59 41.20 2.52
5451 8453 8.208224 TCCAAAGAAGTATACAGTCTTTCACAA 58.792 33.333 22.28 11.47 39.09 3.33
5468 8471 1.907807 AATGTTGCCGCCACACCAT 60.908 52.632 0.00 0.00 0.00 3.55
5516 8519 1.213537 CTTTCCGTCCCGTTCGCTA 59.786 57.895 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 126 9.905713 GGCACATTTTATTATCCTCCTATGATA 57.094 33.333 0.00 0.00 0.00 2.15
139 155 9.941325 TTTGCCTTGATTCATGTGTTTTATATT 57.059 25.926 0.00 0.00 0.00 1.28
148 164 3.992643 TGGTTTTGCCTTGATTCATGTG 58.007 40.909 0.00 0.00 38.35 3.21
234 250 9.744468 CGGGGAAAAACTAAAAATATATTGGAG 57.256 33.333 0.00 0.00 0.00 3.86
238 254 9.541143 CATGCGGGGAAAAACTAAAAATATATT 57.459 29.630 0.00 0.00 0.00 1.28
239 255 8.919145 TCATGCGGGGAAAAACTAAAAATATAT 58.081 29.630 0.00 0.00 0.00 0.86
242 258 6.591750 TCATGCGGGGAAAAACTAAAAATA 57.408 33.333 0.00 0.00 0.00 1.40
244 260 4.939052 TCATGCGGGGAAAAACTAAAAA 57.061 36.364 0.00 0.00 0.00 1.94
389 414 6.181908 ACAGGTACAGGTAGTGTTTGAAAAA 58.818 36.000 0.00 0.00 40.94 1.94
390 415 5.747342 ACAGGTACAGGTAGTGTTTGAAAA 58.253 37.500 0.00 0.00 40.94 2.29
396 421 5.163237 ACATTGAACAGGTACAGGTAGTGTT 60.163 40.000 0.00 6.76 40.94 3.32
400 425 9.832445 ATATTTACATTGAACAGGTACAGGTAG 57.168 33.333 0.00 0.00 0.00 3.18
411 436 8.065473 ACATGAGCCAATATTTACATTGAACA 57.935 30.769 0.00 0.00 38.01 3.18
412 437 8.931385 AACATGAGCCAATATTTACATTGAAC 57.069 30.769 0.00 0.00 38.01 3.18
416 442 8.137437 GTGCTAACATGAGCCAATATTTACATT 58.863 33.333 0.00 0.00 42.11 2.71
427 453 2.236893 TCATGAGTGCTAACATGAGCCA 59.763 45.455 0.00 0.00 44.86 4.75
428 454 2.910199 TCATGAGTGCTAACATGAGCC 58.090 47.619 0.00 0.00 44.86 4.70
432 458 6.347160 CCGTGATTATCATGAGTGCTAACATG 60.347 42.308 15.31 0.00 43.31 3.21
434 460 5.049828 CCGTGATTATCATGAGTGCTAACA 58.950 41.667 15.31 0.00 35.46 2.41
435 461 5.050490 ACCGTGATTATCATGAGTGCTAAC 58.950 41.667 15.31 0.00 35.46 2.34
436 462 5.276461 ACCGTGATTATCATGAGTGCTAA 57.724 39.130 15.31 0.00 35.46 3.09
438 464 3.827008 ACCGTGATTATCATGAGTGCT 57.173 42.857 15.31 0.00 35.46 4.40
439 465 4.882671 AAACCGTGATTATCATGAGTGC 57.117 40.909 15.31 0.00 35.46 4.40
440 466 6.902224 TGTAAACCGTGATTATCATGAGTG 57.098 37.500 15.31 2.34 35.46 3.51
451 487 6.170506 TCTAAAGCAGAATGTAAACCGTGAT 58.829 36.000 0.00 0.00 39.31 3.06
513 553 3.833545 ATAACGACCGCTCTAGCATAG 57.166 47.619 2.44 0.00 42.21 2.23
575 615 1.133407 CACTTCTCTCGCTAGGTGTCC 59.867 57.143 0.00 0.00 0.00 4.02
646 686 3.839432 CTCGGCCGGGTCTTCCTC 61.839 72.222 27.83 0.00 0.00 3.71
721 765 1.166531 GCCGAAACTGCAGAGTTGGT 61.167 55.000 23.35 0.00 41.87 3.67
847 891 2.680841 TGGATGCACGCCAGTAAATTAC 59.319 45.455 6.05 0.00 0.00 1.89
890 934 0.036388 GGGAACAGAGGATCGCACAA 60.036 55.000 0.00 0.00 42.67 3.33
891 935 0.904865 AGGGAACAGAGGATCGCACA 60.905 55.000 0.00 0.00 42.67 4.57
895 939 0.179089 CTGCAGGGAACAGAGGATCG 60.179 60.000 5.57 0.00 42.67 3.69
897 941 1.606531 GCTGCAGGGAACAGAGGAT 59.393 57.895 17.12 0.00 37.32 3.24
923 967 1.604755 GACCCAATGTAAACACACGCA 59.395 47.619 0.00 0.00 0.00 5.24
924 968 1.068816 GGACCCAATGTAAACACACGC 60.069 52.381 0.00 0.00 0.00 5.34
925 969 1.538075 GGGACCCAATGTAAACACACG 59.462 52.381 5.33 0.00 0.00 4.49
926 970 2.871453 AGGGACCCAATGTAAACACAC 58.129 47.619 14.60 0.00 0.00 3.82
927 971 3.139397 AGAAGGGACCCAATGTAAACACA 59.861 43.478 14.60 0.00 0.00 3.72
929 973 4.148838 CAAGAAGGGACCCAATGTAAACA 58.851 43.478 14.60 0.00 0.00 2.83
931 975 3.141272 ACCAAGAAGGGACCCAATGTAAA 59.859 43.478 14.60 0.00 43.89 2.01
932 976 2.719705 ACCAAGAAGGGACCCAATGTAA 59.280 45.455 14.60 0.00 43.89 2.41
933 977 2.354328 ACCAAGAAGGGACCCAATGTA 58.646 47.619 14.60 0.00 43.89 2.29
934 978 1.158007 ACCAAGAAGGGACCCAATGT 58.842 50.000 14.60 0.00 43.89 2.71
935 979 2.309136 AACCAAGAAGGGACCCAATG 57.691 50.000 14.60 5.62 43.89 2.82
936 980 2.178984 TGAAACCAAGAAGGGACCCAAT 59.821 45.455 14.60 0.00 43.89 3.16
937 981 1.571457 TGAAACCAAGAAGGGACCCAA 59.429 47.619 14.60 0.00 43.89 4.12
938 982 1.144913 CTGAAACCAAGAAGGGACCCA 59.855 52.381 14.60 0.00 43.89 4.51
939 983 1.911057 CTGAAACCAAGAAGGGACCC 58.089 55.000 0.59 0.59 43.89 4.46
940 984 1.248486 GCTGAAACCAAGAAGGGACC 58.752 55.000 0.00 0.00 43.89 4.46
941 985 1.248486 GGCTGAAACCAAGAAGGGAC 58.752 55.000 0.00 0.00 43.89 4.46
942 986 0.250727 CGGCTGAAACCAAGAAGGGA 60.251 55.000 0.00 0.00 43.89 4.20
943 987 1.866853 GCGGCTGAAACCAAGAAGGG 61.867 60.000 0.00 0.00 43.89 3.95
944 988 1.581447 GCGGCTGAAACCAAGAAGG 59.419 57.895 0.00 0.00 45.67 3.46
945 989 1.207593 CGCGGCTGAAACCAAGAAG 59.792 57.895 0.00 0.00 0.00 2.85
962 1006 3.594827 CTACGCTACGCACGCACG 61.595 66.667 0.00 0.00 39.50 5.34
965 1009 1.651730 CTCTCTACGCTACGCACGC 60.652 63.158 0.00 0.00 0.00 5.34
966 1010 0.372679 TTCTCTCTACGCTACGCACG 59.627 55.000 0.00 0.00 0.00 5.34
967 1011 1.856807 GCTTCTCTCTACGCTACGCAC 60.857 57.143 0.00 0.00 0.00 5.34
968 1012 0.377554 GCTTCTCTCTACGCTACGCA 59.622 55.000 0.00 0.00 0.00 5.24
970 1014 2.539953 CCTTGCTTCTCTCTACGCTACG 60.540 54.545 0.00 0.00 0.00 3.51
971 1015 2.223618 CCCTTGCTTCTCTCTACGCTAC 60.224 54.545 0.00 0.00 0.00 3.58
972 1016 2.025155 CCCTTGCTTCTCTCTACGCTA 58.975 52.381 0.00 0.00 0.00 4.26
973 1017 0.820871 CCCTTGCTTCTCTCTACGCT 59.179 55.000 0.00 0.00 0.00 5.07
986 1030 0.394899 CACCATCCTCCTTCCCTTGC 60.395 60.000 0.00 0.00 0.00 4.01
987 1031 0.394899 GCACCATCCTCCTTCCCTTG 60.395 60.000 0.00 0.00 0.00 3.61
990 1034 2.597903 GGCACCATCCTCCTTCCC 59.402 66.667 0.00 0.00 0.00 3.97
992 1036 2.190578 CCGGCACCATCCTCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
993 1037 3.411517 CCCGGCACCATCCTCCTT 61.412 66.667 0.00 0.00 0.00 3.36
1208 1270 0.179111 GAAGATGGATGCGACGGACA 60.179 55.000 0.00 0.00 0.00 4.02
1240 1302 2.815647 GGTCTCCTTTCGCTGCGG 60.816 66.667 23.03 5.91 0.00 5.69
1245 1312 0.173708 ACGATGAGGTCTCCTTTCGC 59.826 55.000 16.27 0.00 40.64 4.70
1251 1318 2.413765 GCCGACGATGAGGTCTCC 59.586 66.667 0.00 0.00 34.75 3.71
1544 1620 1.801178 GAAAAACTGACTGAGGCGGAG 59.199 52.381 0.00 0.00 0.00 4.63
1545 1621 1.140052 TGAAAAACTGACTGAGGCGGA 59.860 47.619 0.00 0.00 0.00 5.54
1546 1622 1.532868 CTGAAAAACTGACTGAGGCGG 59.467 52.381 0.00 0.00 0.00 6.13
1547 1623 2.213499 ACTGAAAAACTGACTGAGGCG 58.787 47.619 0.00 0.00 0.00 5.52
1579 1655 2.265467 TATGCAGGAAAGCCGGGGAC 62.265 60.000 2.18 0.00 39.96 4.46
1582 1658 2.180204 CGTATGCAGGAAAGCCGGG 61.180 63.158 2.18 0.00 39.96 5.73
1609 1685 1.135257 CAGTTCCGGTGCAGACTAGAG 60.135 57.143 0.00 0.00 0.00 2.43
1643 1726 1.343789 AGCATCACGATCATCCAGAGG 59.656 52.381 0.00 0.00 0.00 3.69
1647 1734 1.069668 CCAGAGCATCACGATCATCCA 59.930 52.381 0.00 0.00 37.82 3.41
1648 1735 1.342496 TCCAGAGCATCACGATCATCC 59.658 52.381 0.00 0.00 37.82 3.51
1649 1736 2.035704 ACTCCAGAGCATCACGATCATC 59.964 50.000 0.00 0.00 37.82 2.92
1650 1737 2.037901 ACTCCAGAGCATCACGATCAT 58.962 47.619 0.00 0.00 37.82 2.45
1651 1738 1.478631 ACTCCAGAGCATCACGATCA 58.521 50.000 0.00 0.00 37.82 2.92
1671 1758 2.692273 AAAGCGCCTTTTCGTCCCCT 62.692 55.000 2.29 0.00 28.27 4.79
1699 1786 0.765510 AGGAACTGGTCAAGTCCACC 59.234 55.000 0.00 0.00 38.56 4.61
1786 1879 5.644977 TGATGTGAGGATGGATACGATAC 57.355 43.478 0.00 0.00 42.51 2.24
1787 1880 6.267699 AGTTTGATGTGAGGATGGATACGATA 59.732 38.462 0.00 0.00 42.51 2.92
1788 1881 5.070981 AGTTTGATGTGAGGATGGATACGAT 59.929 40.000 0.00 0.00 42.51 3.73
1789 1882 4.405680 AGTTTGATGTGAGGATGGATACGA 59.594 41.667 0.00 0.00 42.51 3.43
1790 1883 4.697514 AGTTTGATGTGAGGATGGATACG 58.302 43.478 0.00 0.00 42.51 3.06
2011 2473 3.084039 TGTGAAATGCAGAGGGATGAAC 58.916 45.455 0.00 0.00 0.00 3.18
2023 2485 5.959527 CACTTGATGTACGTATGTGAAATGC 59.040 40.000 0.00 0.00 0.00 3.56
2028 2490 4.450082 AGCACTTGATGTACGTATGTGA 57.550 40.909 14.76 0.00 0.00 3.58
2031 2549 4.870426 AGGAAAGCACTTGATGTACGTATG 59.130 41.667 0.00 0.00 0.00 2.39
2035 2553 5.462398 GGTATAGGAAAGCACTTGATGTACG 59.538 44.000 0.00 0.00 0.00 3.67
2036 2554 6.346096 TGGTATAGGAAAGCACTTGATGTAC 58.654 40.000 0.00 0.00 0.00 2.90
2039 2557 5.824624 ACATGGTATAGGAAAGCACTTGATG 59.175 40.000 0.00 0.00 0.00 3.07
2057 2575 4.842531 TCATCTTCCACACATACATGGT 57.157 40.909 0.00 0.00 37.27 3.55
2058 2576 4.336433 GGTTCATCTTCCACACATACATGG 59.664 45.833 0.00 0.00 37.32 3.66
2062 2580 3.857052 TCGGTTCATCTTCCACACATAC 58.143 45.455 0.00 0.00 0.00 2.39
2064 2582 3.074412 GTTCGGTTCATCTTCCACACAT 58.926 45.455 0.00 0.00 0.00 3.21
2070 2588 2.347731 GGTCAGTTCGGTTCATCTTCC 58.652 52.381 0.00 0.00 0.00 3.46
2071 2589 2.347731 GGGTCAGTTCGGTTCATCTTC 58.652 52.381 0.00 0.00 0.00 2.87
2073 2591 0.246635 CGGGTCAGTTCGGTTCATCT 59.753 55.000 0.00 0.00 0.00 2.90
2074 2592 0.037605 ACGGGTCAGTTCGGTTCATC 60.038 55.000 0.00 0.00 0.00 2.92
2078 2596 1.688269 TTCCACGGGTCAGTTCGGTT 61.688 55.000 0.00 0.00 0.00 4.44
2080 2598 0.321298 ATTTCCACGGGTCAGTTCGG 60.321 55.000 0.00 0.00 0.00 4.30
2081 2599 1.519408 AATTTCCACGGGTCAGTTCG 58.481 50.000 0.00 0.00 0.00 3.95
2108 2626 1.411246 TGTTACTGCCATAGCCCGTAG 59.589 52.381 0.00 0.00 38.69 3.51
2110 2628 0.837272 ATGTTACTGCCATAGCCCGT 59.163 50.000 0.00 0.00 38.69 5.28
2111 2629 1.070758 AGATGTTACTGCCATAGCCCG 59.929 52.381 0.00 0.00 38.69 6.13
2149 2680 2.280524 CCACGTCCGCTTGTCCAA 60.281 61.111 0.00 0.00 0.00 3.53
2229 2760 1.985116 GCCGAGGAAGGACCAGAGT 60.985 63.158 0.00 0.00 42.04 3.24
2230 2761 2.726351 GGCCGAGGAAGGACCAGAG 61.726 68.421 0.00 0.00 42.04 3.35
2358 3083 1.600916 GAGGATATTGGTGGCGCCC 60.601 63.158 26.77 15.53 36.04 6.13
2431 3387 4.172625 TGCACTAATTCAGCAACCGTAGG 61.173 47.826 0.00 0.00 44.11 3.18
2605 3899 4.764823 TCAGGATTGGTACCAATTGTGAAC 59.235 41.667 34.93 22.72 45.50 3.18
2620 3914 8.306038 TGAACCATTTTTAACTCATCAGGATTG 58.694 33.333 0.00 0.00 0.00 2.67
2784 5055 4.225042 GGATGGGGGAATAAAGTTTTGCTT 59.775 41.667 0.00 0.00 39.52 3.91
2790 5061 4.965283 TGAAGGATGGGGGAATAAAGTT 57.035 40.909 0.00 0.00 0.00 2.66
2791 5062 5.458595 GAATGAAGGATGGGGGAATAAAGT 58.541 41.667 0.00 0.00 0.00 2.66
2822 5093 8.051535 AGCAGTCATATATTAAGAATGGGGATG 58.948 37.037 0.00 0.00 0.00 3.51
2939 5243 3.074538 AGGCCTCTCCAATTAACAACTGT 59.925 43.478 0.00 0.00 37.29 3.55
2941 5245 4.388577 AAGGCCTCTCCAATTAACAACT 57.611 40.909 5.23 0.00 37.29 3.16
3085 5616 2.885644 CCGCACGAGGACCGATTG 60.886 66.667 0.00 0.00 41.76 2.67
3230 5766 1.672881 CGAGAAGGGCCATTGTCATTC 59.327 52.381 24.72 2.14 37.16 2.67
3250 5786 3.674410 GCTTCTAGCAAGGAATGGCAAAC 60.674 47.826 0.00 0.00 41.89 2.93
3390 5938 2.095263 ACGGTTGATGGAATGAAAAGCG 60.095 45.455 4.03 4.03 44.65 4.68
3512 6062 6.524734 ACTGATCATCTTATCATAACGGCAA 58.475 36.000 0.00 0.00 35.40 4.52
3634 6187 4.463186 TCCAAGTACTAGCAACTTCTCTCC 59.537 45.833 7.86 0.00 34.99 3.71
3635 6188 5.646577 TCCAAGTACTAGCAACTTCTCTC 57.353 43.478 7.86 0.00 34.99 3.20
4117 7048 1.324383 TGTAGACGGTGAAGCTGACA 58.676 50.000 0.00 0.00 0.00 3.58
4525 7475 0.322816 ATTGCCACGGTCAGCTTGAT 60.323 50.000 0.00 0.00 0.00 2.57
4528 7478 1.228245 ACATTGCCACGGTCAGCTT 60.228 52.632 0.00 0.00 0.00 3.74
4591 7541 6.770785 TCAGTAACTAGCAACAAATGAAAGGT 59.229 34.615 0.00 0.00 0.00 3.50
4597 7550 5.258622 GCGATCAGTAACTAGCAACAAATG 58.741 41.667 0.00 0.00 0.00 2.32
4740 7695 2.025887 ACGGAAATGATCCCAAGCTCTT 60.026 45.455 0.00 0.00 46.39 2.85
4770 7725 8.462016 GCCATCTACATTTTCAGAAGTACAAAT 58.538 33.333 0.00 0.00 0.00 2.32
4817 7772 1.203025 ACACACGGAGGGAGTACTCTT 60.203 52.381 21.88 11.06 37.63 2.85
4821 7776 1.471684 CACTACACACGGAGGGAGTAC 59.528 57.143 0.00 0.00 0.00 2.73
4822 7777 1.074405 ACACTACACACGGAGGGAGTA 59.926 52.381 0.00 0.00 0.00 2.59
4823 7778 0.178970 ACACTACACACGGAGGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
4824 7779 0.526662 GACACTACACACGGAGGGAG 59.473 60.000 0.00 0.00 0.00 4.30
4825 7780 0.178984 TGACACTACACACGGAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
4826 7781 0.677288 TTGACACTACACACGGAGGG 59.323 55.000 0.00 0.00 0.00 4.30
4827 7782 2.519377 TTTGACACTACACACGGAGG 57.481 50.000 0.00 0.00 0.00 4.30
4828 7783 3.302221 CGTTTTTGACACTACACACGGAG 60.302 47.826 0.00 0.00 0.00 4.63
4829 7784 2.604011 CGTTTTTGACACTACACACGGA 59.396 45.455 0.00 0.00 0.00 4.69
4830 7785 2.848002 GCGTTTTTGACACTACACACGG 60.848 50.000 0.00 0.00 0.00 4.94
4831 7786 2.029970 AGCGTTTTTGACACTACACACG 59.970 45.455 0.00 0.00 0.00 4.49
4832 7787 3.308866 AGAGCGTTTTTGACACTACACAC 59.691 43.478 0.00 0.00 0.00 3.82
4833 7788 3.527533 AGAGCGTTTTTGACACTACACA 58.472 40.909 0.00 0.00 0.00 3.72
4834 7789 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4835 7790 6.924612 TGTATAAGAGCGTTTTTGACACTACA 59.075 34.615 0.00 0.00 0.00 2.74
4836 7791 7.115947 AGTGTATAAGAGCGTTTTTGACACTAC 59.884 37.037 17.12 1.36 42.25 2.73
4837 7792 7.149973 AGTGTATAAGAGCGTTTTTGACACTA 58.850 34.615 17.12 0.00 42.25 2.74
4838 7793 5.989777 AGTGTATAAGAGCGTTTTTGACACT 59.010 36.000 14.61 14.61 39.98 3.55
4839 7794 6.224420 AGTGTATAAGAGCGTTTTTGACAC 57.776 37.500 11.70 11.70 35.92 3.67
4840 7795 7.949903 TTAGTGTATAAGAGCGTTTTTGACA 57.050 32.000 0.00 0.00 0.00 3.58
4847 7802 9.865321 TGTTTTCTATTAGTGTATAAGAGCGTT 57.135 29.630 0.00 0.00 0.00 4.84
4848 7803 9.517609 CTGTTTTCTATTAGTGTATAAGAGCGT 57.482 33.333 0.00 0.00 0.00 5.07
4849 7804 8.969267 CCTGTTTTCTATTAGTGTATAAGAGCG 58.031 37.037 0.00 0.00 0.00 5.03
4850 7805 9.262358 CCCTGTTTTCTATTAGTGTATAAGAGC 57.738 37.037 0.00 0.00 0.00 4.09
4856 7811 9.020731 CCAAAACCCTGTTTTCTATTAGTGTAT 57.979 33.333 2.14 0.00 0.00 2.29
4857 7812 8.000127 ACCAAAACCCTGTTTTCTATTAGTGTA 59.000 33.333 2.14 0.00 0.00 2.90
4858 7813 6.837048 ACCAAAACCCTGTTTTCTATTAGTGT 59.163 34.615 2.14 0.00 0.00 3.55
4859 7814 7.230712 AGACCAAAACCCTGTTTTCTATTAGTG 59.769 37.037 2.14 0.00 0.00 2.74
4860 7815 7.230712 CAGACCAAAACCCTGTTTTCTATTAGT 59.769 37.037 2.14 0.00 0.00 2.24
4861 7816 7.309194 CCAGACCAAAACCCTGTTTTCTATTAG 60.309 40.741 2.14 0.00 0.00 1.73
4862 7817 6.492087 CCAGACCAAAACCCTGTTTTCTATTA 59.508 38.462 2.14 0.00 0.00 0.98
4863 7818 5.304357 CCAGACCAAAACCCTGTTTTCTATT 59.696 40.000 2.14 0.00 0.00 1.73
4864 7819 4.832823 CCAGACCAAAACCCTGTTTTCTAT 59.167 41.667 2.14 0.00 0.00 1.98
4865 7820 4.211920 CCAGACCAAAACCCTGTTTTCTA 58.788 43.478 2.14 0.00 0.00 2.10
4866 7821 3.031013 CCAGACCAAAACCCTGTTTTCT 58.969 45.455 2.14 0.00 0.00 2.52
4867 7822 2.102420 CCCAGACCAAAACCCTGTTTTC 59.898 50.000 2.14 0.00 0.00 2.29
4868 7823 2.115427 CCCAGACCAAAACCCTGTTTT 58.885 47.619 0.00 0.00 0.00 2.43
4869 7824 1.788229 CCCAGACCAAAACCCTGTTT 58.212 50.000 0.00 0.00 0.00 2.83
4870 7825 0.759060 GCCCAGACCAAAACCCTGTT 60.759 55.000 0.00 0.00 0.00 3.16
4871 7826 1.152546 GCCCAGACCAAAACCCTGT 60.153 57.895 0.00 0.00 0.00 4.00
4872 7827 1.908299 GGCCCAGACCAAAACCCTG 60.908 63.158 0.00 0.00 0.00 4.45
4873 7828 2.371897 CTGGCCCAGACCAAAACCCT 62.372 60.000 4.15 0.00 39.86 4.34
4874 7829 1.908299 CTGGCCCAGACCAAAACCC 60.908 63.158 4.15 0.00 39.86 4.11
4875 7830 0.251787 ATCTGGCCCAGACCAAAACC 60.252 55.000 17.46 0.00 43.63 3.27
4876 7831 1.177401 GATCTGGCCCAGACCAAAAC 58.823 55.000 17.46 0.11 43.63 2.43
4877 7832 0.776810 TGATCTGGCCCAGACCAAAA 59.223 50.000 17.46 0.00 43.63 2.44
4878 7833 0.329261 CTGATCTGGCCCAGACCAAA 59.671 55.000 17.46 0.84 43.63 3.28
4879 7834 0.547471 TCTGATCTGGCCCAGACCAA 60.547 55.000 17.46 3.54 43.63 3.67
4880 7835 0.979709 CTCTGATCTGGCCCAGACCA 60.980 60.000 17.46 12.52 43.63 4.02
4881 7836 1.828768 CTCTGATCTGGCCCAGACC 59.171 63.158 17.46 6.95 43.63 3.85
4882 7837 1.145819 GCTCTGATCTGGCCCAGAC 59.854 63.158 17.46 10.77 43.63 3.51
4883 7838 0.619832 AAGCTCTGATCTGGCCCAGA 60.620 55.000 17.41 17.41 44.99 3.86
4884 7839 0.255318 AAAGCTCTGATCTGGCCCAG 59.745 55.000 3.69 3.69 0.00 4.45
4885 7840 1.583556 TAAAGCTCTGATCTGGCCCA 58.416 50.000 0.00 0.00 0.00 5.36
4886 7841 2.685388 GTTTAAAGCTCTGATCTGGCCC 59.315 50.000 0.00 0.00 0.00 5.80
4887 7842 2.685388 GGTTTAAAGCTCTGATCTGGCC 59.315 50.000 10.13 0.00 0.00 5.36
4888 7843 2.685388 GGGTTTAAAGCTCTGATCTGGC 59.315 50.000 16.40 2.80 0.00 4.85
4889 7844 2.939103 CGGGTTTAAAGCTCTGATCTGG 59.061 50.000 16.40 0.00 0.00 3.86
4890 7845 2.939103 CCGGGTTTAAAGCTCTGATCTG 59.061 50.000 16.40 0.00 0.00 2.90
4891 7846 2.572104 ACCGGGTTTAAAGCTCTGATCT 59.428 45.455 16.40 0.00 0.00 2.75
4892 7847 2.987232 ACCGGGTTTAAAGCTCTGATC 58.013 47.619 16.40 0.00 0.00 2.92
4893 7848 3.344515 GAACCGGGTTTAAAGCTCTGAT 58.655 45.455 14.69 1.50 0.00 2.90
4894 7849 2.774687 GAACCGGGTTTAAAGCTCTGA 58.225 47.619 14.69 0.00 0.00 3.27
4895 7850 1.463444 CGAACCGGGTTTAAAGCTCTG 59.537 52.381 14.69 8.21 0.00 3.35
4896 7851 1.345415 TCGAACCGGGTTTAAAGCTCT 59.655 47.619 14.69 0.00 0.00 4.09
4897 7852 1.730612 CTCGAACCGGGTTTAAAGCTC 59.269 52.381 14.69 5.93 0.00 4.09
4898 7853 1.804601 CTCGAACCGGGTTTAAAGCT 58.195 50.000 14.69 0.00 0.00 3.74
4899 7854 0.167470 GCTCGAACCGGGTTTAAAGC 59.833 55.000 14.69 17.71 0.00 3.51
4900 7855 1.515081 TGCTCGAACCGGGTTTAAAG 58.485 50.000 14.69 12.35 0.00 1.85
4901 7856 1.603326 GTTGCTCGAACCGGGTTTAAA 59.397 47.619 14.69 1.96 0.00 1.52
4902 7857 1.228533 GTTGCTCGAACCGGGTTTAA 58.771 50.000 14.69 4.51 0.00 1.52
4903 7858 0.603439 GGTTGCTCGAACCGGGTTTA 60.603 55.000 14.69 4.85 45.00 2.01
4904 7859 1.895231 GGTTGCTCGAACCGGGTTT 60.895 57.895 14.69 0.00 45.00 3.27
4905 7860 2.281276 GGTTGCTCGAACCGGGTT 60.281 61.111 13.26 13.26 45.00 4.11
4911 7866 2.035442 GCTCCCTGGTTGCTCGAAC 61.035 63.158 0.00 0.00 0.00 3.95
4912 7867 2.347490 GCTCCCTGGTTGCTCGAA 59.653 61.111 0.00 0.00 0.00 3.71
4913 7868 3.706373 GGCTCCCTGGTTGCTCGA 61.706 66.667 7.83 0.00 0.00 4.04
4915 7870 4.785453 CCGGCTCCCTGGTTGCTC 62.785 72.222 0.00 0.00 0.00 4.26
4935 7890 3.075005 TAGTGTCTGCCGAGGCCC 61.075 66.667 12.05 0.27 41.09 5.80
4936 7891 2.286127 GACTAGTGTCTGCCGAGGCC 62.286 65.000 12.05 0.00 39.94 5.19
4937 7892 1.139947 GACTAGTGTCTGCCGAGGC 59.860 63.158 7.26 7.26 39.94 4.70
4938 7893 1.668101 GGGACTAGTGTCTGCCGAGG 61.668 65.000 0.00 0.00 42.54 4.63
4939 7894 1.810532 GGGACTAGTGTCTGCCGAG 59.189 63.158 0.00 0.00 42.54 4.63
4940 7895 2.044555 CGGGACTAGTGTCTGCCGA 61.045 63.158 0.00 0.00 44.90 5.54
4941 7896 2.490217 CGGGACTAGTGTCTGCCG 59.510 66.667 0.00 0.00 42.54 5.69
4942 7897 1.542187 AACCGGGACTAGTGTCTGCC 61.542 60.000 6.32 0.00 42.54 4.85
4943 7898 0.108756 GAACCGGGACTAGTGTCTGC 60.109 60.000 6.32 0.00 42.54 4.26
4944 7899 0.170561 CGAACCGGGACTAGTGTCTG 59.829 60.000 6.32 0.00 42.54 3.51
4945 7900 0.251077 ACGAACCGGGACTAGTGTCT 60.251 55.000 6.32 0.00 42.54 3.41
4946 7901 0.169894 GACGAACCGGGACTAGTGTC 59.830 60.000 6.32 0.00 42.22 3.67
4947 7902 0.251077 AGACGAACCGGGACTAGTGT 60.251 55.000 6.32 0.00 0.00 3.55
4948 7903 0.170561 CAGACGAACCGGGACTAGTG 59.829 60.000 6.32 0.00 0.00 2.74
4949 7904 0.037303 TCAGACGAACCGGGACTAGT 59.963 55.000 6.32 0.00 0.00 2.57
4950 7905 0.450983 GTCAGACGAACCGGGACTAG 59.549 60.000 6.32 0.00 0.00 2.57
4951 7906 0.962356 GGTCAGACGAACCGGGACTA 60.962 60.000 6.32 0.00 31.22 2.59
4952 7907 2.273912 GGTCAGACGAACCGGGACT 61.274 63.158 6.32 0.00 31.22 3.85
4953 7908 2.260743 GGTCAGACGAACCGGGAC 59.739 66.667 6.32 0.61 0.00 4.46
4954 7909 2.993264 GGGTCAGACGAACCGGGA 60.993 66.667 6.32 0.00 39.88 5.14
4959 7914 2.353505 GGACTAAAGGGGTCAGACGAAC 60.354 54.545 0.00 0.00 35.61 3.95
4960 7915 1.897802 GGACTAAAGGGGTCAGACGAA 59.102 52.381 0.00 0.00 35.61 3.85
4961 7916 1.553706 GGACTAAAGGGGTCAGACGA 58.446 55.000 0.00 0.00 35.61 4.20
4962 7917 0.535797 GGGACTAAAGGGGTCAGACG 59.464 60.000 0.00 0.00 35.61 4.18
4963 7918 0.535797 CGGGACTAAAGGGGTCAGAC 59.464 60.000 0.00 0.00 35.61 3.51
4964 7919 0.616679 CCGGGACTAAAGGGGTCAGA 60.617 60.000 0.00 0.00 35.61 3.27
4965 7920 0.908180 ACCGGGACTAAAGGGGTCAG 60.908 60.000 6.32 0.00 35.61 3.51
4966 7921 0.474273 AACCGGGACTAAAGGGGTCA 60.474 55.000 6.32 0.00 35.61 4.02
4967 7922 0.251354 GAACCGGGACTAAAGGGGTC 59.749 60.000 6.32 0.00 0.00 4.46
4968 7923 1.203441 GGAACCGGGACTAAAGGGGT 61.203 60.000 6.32 0.00 0.00 4.95
4969 7924 1.202769 TGGAACCGGGACTAAAGGGG 61.203 60.000 6.32 0.00 0.00 4.79
4970 7925 0.252197 CTGGAACCGGGACTAAAGGG 59.748 60.000 6.32 0.00 0.00 3.95
4971 7926 1.066358 GTCTGGAACCGGGACTAAAGG 60.066 57.143 6.32 0.00 0.00 3.11
4972 7927 1.621814 TGTCTGGAACCGGGACTAAAG 59.378 52.381 6.32 0.00 0.00 1.85
4973 7928 1.345415 GTGTCTGGAACCGGGACTAAA 59.655 52.381 6.32 0.00 0.00 1.85
4974 7929 0.971386 GTGTCTGGAACCGGGACTAA 59.029 55.000 6.32 0.00 0.00 2.24
4975 7930 1.246056 CGTGTCTGGAACCGGGACTA 61.246 60.000 6.32 0.00 0.00 2.59
4976 7931 2.571216 CGTGTCTGGAACCGGGACT 61.571 63.158 6.32 0.00 0.00 3.85
4977 7932 2.048503 CGTGTCTGGAACCGGGAC 60.049 66.667 6.32 3.26 0.00 4.46
4978 7933 1.833492 TTCGTGTCTGGAACCGGGA 60.833 57.895 6.32 0.00 0.00 5.14
4979 7934 1.666872 GTTCGTGTCTGGAACCGGG 60.667 63.158 6.32 0.00 38.23 5.73
4980 7935 3.946907 GTTCGTGTCTGGAACCGG 58.053 61.111 0.00 0.00 38.23 5.28
4983 7938 1.666872 CCCGGTTCGTGTCTGGAAC 60.667 63.158 0.00 0.00 42.32 3.62
4984 7939 1.833492 TCCCGGTTCGTGTCTGGAA 60.833 57.895 0.00 0.00 33.49 3.53
4985 7940 2.203523 TCCCGGTTCGTGTCTGGA 60.204 61.111 0.00 0.00 33.49 3.86
4986 7941 1.246056 TAGTCCCGGTTCGTGTCTGG 61.246 60.000 0.00 0.00 0.00 3.86
4987 7942 0.599558 TTAGTCCCGGTTCGTGTCTG 59.400 55.000 0.00 0.00 0.00 3.51
4988 7943 1.271656 CTTTAGTCCCGGTTCGTGTCT 59.728 52.381 0.00 0.00 0.00 3.41
4989 7944 1.270550 TCTTTAGTCCCGGTTCGTGTC 59.729 52.381 0.00 0.00 0.00 3.67
4990 7945 1.331214 TCTTTAGTCCCGGTTCGTGT 58.669 50.000 0.00 0.00 0.00 4.49
4991 7946 2.537401 GATCTTTAGTCCCGGTTCGTG 58.463 52.381 0.00 0.00 0.00 4.35
4992 7947 1.479730 GGATCTTTAGTCCCGGTTCGT 59.520 52.381 0.00 0.00 0.00 3.85
4993 7948 1.535437 CGGATCTTTAGTCCCGGTTCG 60.535 57.143 0.00 0.00 38.42 3.95
4994 7949 1.753073 TCGGATCTTTAGTCCCGGTTC 59.247 52.381 0.00 0.00 42.03 3.62
4995 7950 1.856629 TCGGATCTTTAGTCCCGGTT 58.143 50.000 0.00 0.00 42.03 4.44
4996 7951 2.083628 ATCGGATCTTTAGTCCCGGT 57.916 50.000 0.00 0.00 42.03 5.28
4997 7952 3.470645 AAATCGGATCTTTAGTCCCGG 57.529 47.619 0.00 0.00 42.03 5.73
5045 8000 4.524328 GGGATGGTCTTTTCTGTCAATTGT 59.476 41.667 5.13 0.00 0.00 2.71
5081 8036 0.823356 GCCCAGCTGGTCTGTTTTGA 60.823 55.000 30.63 0.00 41.25 2.69
5206 8194 1.002990 CCATCTGCACAGTGCTCCA 60.003 57.895 25.83 10.28 45.31 3.86
5234 8222 2.325393 ATTAGCTACAGCCGCCACCC 62.325 60.000 0.00 0.00 43.38 4.61
5235 8223 0.391597 TATTAGCTACAGCCGCCACC 59.608 55.000 0.00 0.00 43.38 4.61
5236 8224 2.234300 TTATTAGCTACAGCCGCCAC 57.766 50.000 0.00 0.00 43.38 5.01
5237 8225 4.610605 TTATTATTAGCTACAGCCGCCA 57.389 40.909 0.00 0.00 43.38 5.69
5238 8226 5.163754 CCAATTATTATTAGCTACAGCCGCC 60.164 44.000 0.00 0.00 43.38 6.13
5240 8228 5.163754 GCCCAATTATTATTAGCTACAGCCG 60.164 44.000 0.00 0.00 43.38 5.52
5241 8229 5.163754 CGCCCAATTATTATTAGCTACAGCC 60.164 44.000 0.00 0.00 43.38 4.85
5260 8259 3.700539 TGTACTGCTAGTAAATACGCCCA 59.299 43.478 0.00 0.00 31.62 5.36
5276 8275 3.219176 AGGGAATCCATGCATGTACTG 57.781 47.619 24.58 9.94 34.83 2.74
5297 8297 0.248175 GCATGCACGCATCGAATTCA 60.248 50.000 14.21 0.00 33.90 2.57
5302 8302 3.868123 GCTGCATGCACGCATCGA 61.868 61.111 26.77 3.98 42.06 3.59
5332 8332 6.183361 GGTGCTAATAATCAAGGGAGAGAGAA 60.183 42.308 0.00 0.00 0.00 2.87
5333 8333 5.305644 GGTGCTAATAATCAAGGGAGAGAGA 59.694 44.000 0.00 0.00 0.00 3.10
5446 8448 1.825622 TGTGGCGGCAACATTGTGA 60.826 52.632 15.50 0.00 0.00 3.58
5451 8453 2.283101 ATGGTGTGGCGGCAACAT 60.283 55.556 15.50 15.85 41.50 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.