Multiple sequence alignment - TraesCS1B01G286800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G286800 chr1B 100.000 3323 0 0 1 3323 498861972 498858650 0.000000e+00 6137.0
1 TraesCS1B01G286800 chr1B 92.377 223 17 0 1109 1331 498860702 498860480 5.350000e-83 318.0
2 TraesCS1B01G286800 chr1B 92.377 223 17 0 1271 1493 498860864 498860642 5.350000e-83 318.0
3 TraesCS1B01G286800 chr1B 83.381 349 45 12 2569 2907 424998003 424998348 8.950000e-81 311.0
4 TraesCS1B01G286800 chr1D 91.483 1409 102 8 1178 2573 374037221 374035818 0.000000e+00 1921.0
5 TraesCS1B01G286800 chr1D 87.345 885 23 19 489 1320 374038427 374037579 0.000000e+00 931.0
6 TraesCS1B01G286800 chr1D 94.885 391 16 2 2931 3320 374035740 374035353 2.830000e-170 608.0
7 TraesCS1B01G286800 chr1D 80.098 814 145 11 1511 2318 373654657 373653855 1.030000e-164 590.0
8 TraesCS1B01G286800 chr1D 94.345 336 15 2 1 335 374038997 374038665 2.290000e-141 512.0
9 TraesCS1B01G286800 chr1D 87.356 435 28 8 336 752 374038696 374038271 1.080000e-129 473.0
10 TraesCS1B01G286800 chr1D 94.170 223 13 0 1109 1331 374037128 374036906 1.140000e-89 340.0
11 TraesCS1B01G286800 chr1D 93.500 200 12 1 3080 3278 374002465 374002266 2.510000e-76 296.0
12 TraesCS1B01G286800 chr1D 90.566 212 20 0 1271 1482 374037790 374037579 7.020000e-72 281.0
13 TraesCS1B01G286800 chr1D 95.597 159 7 0 1340 1498 374037221 374037063 4.250000e-64 255.0
14 TraesCS1B01G286800 chr1D 85.475 179 22 4 2904 3081 71043388 71043213 2.040000e-42 183.0
15 TraesCS1B01G286800 chr1D 85.027 187 19 6 916 1102 373662778 373662601 7.320000e-42 182.0
16 TraesCS1B01G286800 chr1D 90.426 94 9 0 2338 2431 373437201 373437108 1.250000e-24 124.0
17 TraesCS1B01G286800 chr1D 96.970 33 0 1 2735 2767 470083735 470083704 2.000000e-03 54.7
18 TraesCS1B01G286800 chr1A 93.470 1072 60 7 1511 2578 473628957 473627892 0.000000e+00 1583.0
19 TraesCS1B01G286800 chr1A 86.869 891 58 30 554 1422 473629809 473628956 0.000000e+00 942.0
20 TraesCS1B01G286800 chr1A 92.180 422 28 3 2902 3323 473627890 473627474 2.850000e-165 592.0
21 TraesCS1B01G286800 chr1A 92.857 336 20 2 1 335 473630276 473629944 4.980000e-133 484.0
22 TraesCS1B01G286800 chr1A 88.194 288 14 5 336 609 473629975 473629694 3.200000e-85 326.0
23 TraesCS1B01G286800 chr1A 80.294 340 55 9 2574 2904 465513780 465513444 2.560000e-61 246.0
24 TraesCS1B01G286800 chr1A 86.740 181 20 4 2902 3081 1118668 1118491 7.270000e-47 198.0
25 TraesCS1B01G286800 chr1A 85.625 160 17 4 1101 1260 473629109 473628956 2.650000e-36 163.0
26 TraesCS1B01G286800 chr3D 85.285 333 39 10 2576 2900 16373394 16373724 5.310000e-88 335.0
27 TraesCS1B01G286800 chr3D 85.955 178 23 2 2904 3081 196945397 196945572 4.380000e-44 189.0
28 TraesCS1B01G286800 chr2D 82.906 351 46 11 2576 2915 203757443 203757790 1.500000e-78 303.0
29 TraesCS1B01G286800 chr2D 81.737 334 51 9 2580 2905 603690129 603689798 1.520000e-68 270.0
30 TraesCS1B01G286800 chr6B 82.386 352 48 12 2575 2917 703457388 703457042 9.020000e-76 294.0
31 TraesCS1B01G286800 chr6B 86.667 180 20 2 2902 3081 91130313 91130138 2.620000e-46 196.0
32 TraesCS1B01G286800 chr6B 84.444 180 24 4 2903 3081 46621471 46621295 1.230000e-39 174.0
33 TraesCS1B01G286800 chr4B 82.891 339 46 10 2575 2904 276842936 276843271 9.020000e-76 294.0
34 TraesCS1B01G286800 chr4B 82.971 276 38 7 2637 2904 457823633 457823907 1.190000e-59 241.0
35 TraesCS1B01G286800 chr4A 81.600 375 51 16 2543 2908 695262644 695263009 9.020000e-76 294.0
36 TraesCS1B01G286800 chr6A 82.840 338 47 9 2576 2904 475486079 475486414 3.240000e-75 292.0
37 TraesCS1B01G286800 chr6A 82.216 343 49 11 2575 2907 551696055 551695715 5.430000e-73 285.0
38 TraesCS1B01G286800 chr4D 81.977 344 52 9 2569 2904 268074903 268075244 1.950000e-72 283.0
39 TraesCS1B01G286800 chr4D 85.556 180 20 4 2904 3081 123100547 123100722 2.040000e-42 183.0
40 TraesCS1B01G286800 chr5A 82.164 342 47 13 2577 2912 557111037 557110704 7.020000e-72 281.0
41 TraesCS1B01G286800 chr5A 79.464 336 58 9 2576 2903 643032170 643032502 9.270000e-56 228.0
42 TraesCS1B01G286800 chr2B 82.249 338 40 12 2576 2903 719564798 719564471 1.170000e-69 274.0
43 TraesCS1B01G286800 chr5B 82.012 328 50 9 2580 2905 95516561 95516881 1.520000e-68 270.0
44 TraesCS1B01G286800 chr5B 79.370 349 56 11 2568 2907 152549464 152549805 7.170000e-57 231.0
45 TraesCS1B01G286800 chr5B 84.181 177 24 2 2904 3080 600644551 600644723 5.700000e-38 169.0
46 TraesCS1B01G286800 chr7B 80.864 324 54 8 2576 2893 660663767 660664088 7.120000e-62 248.0
47 TraesCS1B01G286800 chr3B 78.852 331 51 16 2583 2904 602791740 602791420 4.350000e-49 206.0
48 TraesCS1B01G286800 chr5D 84.916 179 18 9 2904 3081 514303069 514303239 4.410000e-39 172.0
49 TraesCS1B01G286800 chr7A 100.000 28 0 0 2739 2766 708507043 708507016 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G286800 chr1B 498858650 498861972 3322 True 2257.666667 6137 94.918000 1 3323 3 chr1B.!!$R1 3322
1 TraesCS1B01G286800 chr1D 374035353 374038997 3644 True 665.125000 1921 91.968375 1 3320 8 chr1D.!!$R7 3319
2 TraesCS1B01G286800 chr1D 373653855 373654657 802 True 590.000000 590 80.098000 1511 2318 1 chr1D.!!$R3 807
3 TraesCS1B01G286800 chr1A 473627474 473630276 2802 True 681.666667 1583 89.865833 1 3323 6 chr1A.!!$R3 3322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 330 0.790993 TGGGTTAGGAGGTGGAGACT 59.209 55.0 0.0 0.0 0.00 3.24 F
1661 2347 0.250166 AGGGAGGTGGAAAACGTTCG 60.250 55.0 0.0 0.0 34.28 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 2476 0.179225 CCGCATTCTTGAAACCGACG 60.179 55.0 7.31 0.0 0.00 5.12 R
2843 3537 0.321210 CACGGTGACCAAGGCACATA 60.321 55.0 0.74 0.0 37.99 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.303311 GAGGTTGTAGAAGGAAGCCAGT 59.697 50.000 0.00 0.00 0.00 4.00
48 49 7.994425 TGAATGCCTGAAGACAAATAAGTTA 57.006 32.000 0.00 0.00 0.00 2.24
75 76 8.608317 GCCAAGTTATCTGAGTTTAGAAAGATC 58.392 37.037 0.00 0.00 31.90 2.75
93 94 9.442047 AGAAAGATCAATTTCAAGATTACTCGT 57.558 29.630 9.39 0.00 40.86 4.18
94 95 9.695884 GAAAGATCAATTTCAAGATTACTCGTC 57.304 33.333 0.00 0.00 38.73 4.20
95 96 9.442047 AAAGATCAATTTCAAGATTACTCGTCT 57.558 29.630 0.00 0.00 0.00 4.18
98 99 7.582435 TCAATTTCAAGATTACTCGTCTCAC 57.418 36.000 0.00 0.00 0.00 3.51
101 102 4.703645 TCAAGATTACTCGTCTCACCAG 57.296 45.455 0.00 0.00 0.00 4.00
102 103 3.119459 TCAAGATTACTCGTCTCACCAGC 60.119 47.826 0.00 0.00 0.00 4.85
108 109 2.164865 CTCGTCTCACCAGCAAGCCT 62.165 60.000 0.00 0.00 0.00 4.58
140 141 1.854434 GCAAATAATCAACGCCCGTCG 60.854 52.381 0.00 0.00 45.38 5.12
195 196 2.986492 AGCAAGGCAATTGGATGCT 58.014 47.368 7.72 0.00 45.68 3.79
303 304 1.278985 TCAAGATTCGTCATGCAGGGT 59.721 47.619 0.00 0.00 0.00 4.34
304 305 1.667724 CAAGATTCGTCATGCAGGGTC 59.332 52.381 0.00 0.00 0.00 4.46
305 306 0.904649 AGATTCGTCATGCAGGGTCA 59.095 50.000 0.00 0.00 0.00 4.02
306 307 1.487976 AGATTCGTCATGCAGGGTCAT 59.512 47.619 0.00 0.00 0.00 3.06
307 308 2.092753 AGATTCGTCATGCAGGGTCATT 60.093 45.455 0.00 0.00 0.00 2.57
308 309 2.198827 TTCGTCATGCAGGGTCATTT 57.801 45.000 0.00 0.00 0.00 2.32
309 310 2.198827 TCGTCATGCAGGGTCATTTT 57.801 45.000 0.00 0.00 0.00 1.82
310 311 2.513753 TCGTCATGCAGGGTCATTTTT 58.486 42.857 0.00 0.00 0.00 1.94
311 312 2.228582 TCGTCATGCAGGGTCATTTTTG 59.771 45.455 0.00 0.00 0.00 2.44
312 313 2.671914 CGTCATGCAGGGTCATTTTTGG 60.672 50.000 0.00 0.00 0.00 3.28
313 314 1.901159 TCATGCAGGGTCATTTTTGGG 59.099 47.619 0.00 0.00 0.00 4.12
314 315 1.624813 CATGCAGGGTCATTTTTGGGT 59.375 47.619 0.00 0.00 0.00 4.51
315 316 1.799933 TGCAGGGTCATTTTTGGGTT 58.200 45.000 0.00 0.00 0.00 4.11
316 317 2.964209 TGCAGGGTCATTTTTGGGTTA 58.036 42.857 0.00 0.00 0.00 2.85
317 318 2.896685 TGCAGGGTCATTTTTGGGTTAG 59.103 45.455 0.00 0.00 0.00 2.34
318 319 2.233676 GCAGGGTCATTTTTGGGTTAGG 59.766 50.000 0.00 0.00 0.00 2.69
319 320 3.773560 CAGGGTCATTTTTGGGTTAGGA 58.226 45.455 0.00 0.00 0.00 2.94
320 321 3.763897 CAGGGTCATTTTTGGGTTAGGAG 59.236 47.826 0.00 0.00 0.00 3.69
321 322 3.096852 GGGTCATTTTTGGGTTAGGAGG 58.903 50.000 0.00 0.00 0.00 4.30
322 323 3.501568 GGGTCATTTTTGGGTTAGGAGGT 60.502 47.826 0.00 0.00 0.00 3.85
323 324 3.509967 GGTCATTTTTGGGTTAGGAGGTG 59.490 47.826 0.00 0.00 0.00 4.00
324 325 3.509967 GTCATTTTTGGGTTAGGAGGTGG 59.490 47.826 0.00 0.00 0.00 4.61
325 326 3.399644 TCATTTTTGGGTTAGGAGGTGGA 59.600 43.478 0.00 0.00 0.00 4.02
326 327 3.518992 TTTTTGGGTTAGGAGGTGGAG 57.481 47.619 0.00 0.00 0.00 3.86
327 328 2.426431 TTTGGGTTAGGAGGTGGAGA 57.574 50.000 0.00 0.00 0.00 3.71
328 329 1.652947 TTGGGTTAGGAGGTGGAGAC 58.347 55.000 0.00 0.00 0.00 3.36
329 330 0.790993 TGGGTTAGGAGGTGGAGACT 59.209 55.000 0.00 0.00 0.00 3.24
330 331 1.196012 GGGTTAGGAGGTGGAGACTG 58.804 60.000 0.00 0.00 0.00 3.51
331 332 1.273098 GGGTTAGGAGGTGGAGACTGA 60.273 57.143 0.00 0.00 0.00 3.41
332 333 2.537143 GGTTAGGAGGTGGAGACTGAA 58.463 52.381 0.00 0.00 0.00 3.02
333 334 2.498078 GGTTAGGAGGTGGAGACTGAAG 59.502 54.545 0.00 0.00 0.00 3.02
334 335 3.432378 GTTAGGAGGTGGAGACTGAAGA 58.568 50.000 0.00 0.00 0.00 2.87
374 375 3.325135 GGTGGAGACTGAAGAAGGAAAGA 59.675 47.826 0.00 0.00 0.00 2.52
392 393 5.069119 GGAAAGACAATTGAAACAAGGGAGT 59.931 40.000 13.59 0.00 0.00 3.85
393 394 6.264518 GGAAAGACAATTGAAACAAGGGAGTA 59.735 38.462 13.59 0.00 0.00 2.59
401 402 5.623956 TGAAACAAGGGAGTAGAAGTTGA 57.376 39.130 0.00 0.00 0.00 3.18
434 435 4.095782 GCTTGATAAAACAGTATCCCGCAA 59.904 41.667 0.00 0.00 30.80 4.85
450 451 2.046120 AAAATCGGCGGGCGGTTA 60.046 55.556 22.95 4.43 0.00 2.85
581 600 8.618240 TTACTACTTAAAATCCTCCTCCATGA 57.382 34.615 0.00 0.00 0.00 3.07
582 601 6.890293 ACTACTTAAAATCCTCCTCCATGAC 58.110 40.000 0.00 0.00 0.00 3.06
583 602 5.117406 ACTTAAAATCCTCCTCCATGACC 57.883 43.478 0.00 0.00 0.00 4.02
584 603 4.540099 ACTTAAAATCCTCCTCCATGACCA 59.460 41.667 0.00 0.00 0.00 4.02
585 604 5.194537 ACTTAAAATCCTCCTCCATGACCAT 59.805 40.000 0.00 0.00 0.00 3.55
586 605 3.589951 AAATCCTCCTCCATGACCATG 57.410 47.619 0.00 3.11 38.51 3.66
611 630 3.403038 GTCCATATACATGAGTGGGCAC 58.597 50.000 0.00 0.00 36.39 5.01
644 788 6.253946 ACTACTTAAAATCCTCCTCCATGG 57.746 41.667 4.97 4.97 37.10 3.66
645 789 5.970640 ACTACTTAAAATCCTCCTCCATGGA 59.029 40.000 15.27 15.27 43.86 3.41
666 820 4.712337 GGAGGTCTATATACATGAGTGGGG 59.288 50.000 0.00 0.00 0.00 4.96
671 825 6.952358 GGTCTATATACATGAGTGGGGAGTTA 59.048 42.308 0.00 0.00 0.00 2.24
693 847 8.751242 AGTTACTTACTACTTCAAATCCTCCTC 58.249 37.037 0.00 0.00 34.56 3.71
694 848 6.547930 ACTTACTACTTCAAATCCTCCTCC 57.452 41.667 0.00 0.00 0.00 4.30
695 849 6.023603 ACTTACTACTTCAAATCCTCCTCCA 58.976 40.000 0.00 0.00 0.00 3.86
696 850 6.674419 ACTTACTACTTCAAATCCTCCTCCAT 59.326 38.462 0.00 0.00 0.00 3.41
697 851 5.365021 ACTACTTCAAATCCTCCTCCATG 57.635 43.478 0.00 0.00 0.00 3.66
698 852 3.659183 ACTTCAAATCCTCCTCCATGG 57.341 47.619 4.97 4.97 37.10 3.66
699 853 3.192944 ACTTCAAATCCTCCTCCATGGA 58.807 45.455 15.27 15.27 43.86 3.41
1041 1197 0.959372 AGCTGATGGTGTGCTTGCTC 60.959 55.000 0.00 0.00 32.61 4.26
1056 1212 3.414700 CTCGCAACCACGGCACTC 61.415 66.667 0.00 0.00 0.00 3.51
1354 2037 1.908483 GCCCTCGTCCTTCCAGAAT 59.092 57.895 0.00 0.00 0.00 2.40
1357 2040 1.555075 CCCTCGTCCTTCCAGAATTCA 59.445 52.381 8.44 0.00 0.00 2.57
1450 2133 4.437587 GCACTGGAGCCCTGCCAT 62.438 66.667 0.00 0.00 34.33 4.40
1588 2274 5.551233 TGAAGATCACTTACCAAGTCAAGG 58.449 41.667 0.00 0.00 40.46 3.61
1602 2288 5.215160 CAAGTCAAGGCAAAGTACATGAAC 58.785 41.667 0.00 0.00 0.00 3.18
1621 2307 3.229697 ACTTCCAGCAAAGCCTTTACT 57.770 42.857 0.00 0.00 0.00 2.24
1622 2308 3.566351 ACTTCCAGCAAAGCCTTTACTT 58.434 40.909 0.00 0.00 0.00 2.24
1624 2310 2.944129 TCCAGCAAAGCCTTTACTTGT 58.056 42.857 0.00 0.00 0.00 3.16
1626 2312 3.704061 TCCAGCAAAGCCTTTACTTGTTT 59.296 39.130 0.00 0.00 0.00 2.83
1633 2319 2.548480 AGCCTTTACTTGTTTCTGACGC 59.452 45.455 0.00 0.00 0.00 5.19
1661 2347 0.250166 AGGGAGGTGGAAAACGTTCG 60.250 55.000 0.00 0.00 34.28 3.95
1782 2476 2.460918 CGGACCGACAATGTCTACATC 58.539 52.381 8.64 3.59 35.10 3.06
1890 2584 1.605058 ATGACTACGGCAGCCTCGTT 61.605 55.000 10.54 0.00 41.38 3.85
2044 2738 2.113986 GGCTGTGCCTTGTGGTCT 59.886 61.111 0.73 0.00 46.69 3.85
2209 2903 1.062428 AGGATGGAGTATGGAACCCGA 60.062 52.381 0.00 0.00 0.00 5.14
2390 3084 3.306780 CGAGTTAGAAAAGAAGAGCCCCA 60.307 47.826 0.00 0.00 0.00 4.96
2483 3177 6.107901 TGCACCAATAAATAAACAAAGGCT 57.892 33.333 0.00 0.00 0.00 4.58
2521 3215 6.403092 CCAATGTGGAAAAACTTGGTTGTTTC 60.403 38.462 0.00 0.00 40.96 2.78
2535 3229 4.518970 TGGTTGTTTCTGATGCCTCTTTAC 59.481 41.667 0.00 0.00 0.00 2.01
2560 3254 5.570589 GCTTGAGCACTGTGAAATTTCATAC 59.429 40.000 23.05 12.28 39.17 2.39
2578 3272 9.995003 ATTTCATACTACTAGCTACTACGTACT 57.005 33.333 0.00 0.00 0.00 2.73
2579 3273 9.469807 TTTCATACTACTAGCTACTACGTACTC 57.530 37.037 0.00 0.00 0.00 2.59
2580 3274 7.598278 TCATACTACTAGCTACTACGTACTCC 58.402 42.308 0.00 0.00 0.00 3.85
2581 3275 5.208463 ACTACTAGCTACTACGTACTCCC 57.792 47.826 0.00 0.00 0.00 4.30
2582 3276 4.898861 ACTACTAGCTACTACGTACTCCCT 59.101 45.833 0.00 0.00 0.00 4.20
2583 3277 4.335400 ACTAGCTACTACGTACTCCCTC 57.665 50.000 0.00 0.00 0.00 4.30
2584 3278 2.636647 AGCTACTACGTACTCCCTCC 57.363 55.000 0.00 0.00 0.00 4.30
2585 3279 1.202627 AGCTACTACGTACTCCCTCCG 60.203 57.143 0.00 0.00 0.00 4.63
2586 3280 1.474143 GCTACTACGTACTCCCTCCGT 60.474 57.143 0.00 0.00 38.53 4.69
2587 3281 2.911484 CTACTACGTACTCCCTCCGTT 58.089 52.381 0.00 0.00 36.12 4.44
2588 3282 2.206576 ACTACGTACTCCCTCCGTTT 57.793 50.000 0.00 0.00 36.12 3.60
2589 3283 2.087646 ACTACGTACTCCCTCCGTTTC 58.912 52.381 0.00 0.00 36.12 2.78
2590 3284 2.290577 ACTACGTACTCCCTCCGTTTCT 60.291 50.000 0.00 0.00 36.12 2.52
2591 3285 1.625511 ACGTACTCCCTCCGTTTCTT 58.374 50.000 0.00 0.00 0.00 2.52
2592 3286 1.966354 ACGTACTCCCTCCGTTTCTTT 59.034 47.619 0.00 0.00 0.00 2.52
2593 3287 3.157087 ACGTACTCCCTCCGTTTCTTTA 58.843 45.455 0.00 0.00 0.00 1.85
2594 3288 3.766051 ACGTACTCCCTCCGTTTCTTTAT 59.234 43.478 0.00 0.00 0.00 1.40
2595 3289 4.949856 ACGTACTCCCTCCGTTTCTTTATA 59.050 41.667 0.00 0.00 0.00 0.98
2596 3290 5.595952 ACGTACTCCCTCCGTTTCTTTATAT 59.404 40.000 0.00 0.00 0.00 0.86
2597 3291 6.772716 ACGTACTCCCTCCGTTTCTTTATATA 59.227 38.462 0.00 0.00 0.00 0.86
2598 3292 7.285401 ACGTACTCCCTCCGTTTCTTTATATAA 59.715 37.037 0.00 0.00 0.00 0.98
2599 3293 7.806960 CGTACTCCCTCCGTTTCTTTATATAAG 59.193 40.741 0.00 0.00 0.00 1.73
2600 3294 7.909485 ACTCCCTCCGTTTCTTTATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2601 3295 8.493787 ACTCCCTCCGTTTCTTTATATAAGAT 57.506 34.615 0.00 0.00 0.00 2.40
2602 3296 8.368668 ACTCCCTCCGTTTCTTTATATAAGATG 58.631 37.037 0.00 0.00 0.00 2.90
2603 3297 8.258850 TCCCTCCGTTTCTTTATATAAGATGT 57.741 34.615 0.00 0.00 0.00 3.06
2604 3298 9.370930 TCCCTCCGTTTCTTTATATAAGATGTA 57.629 33.333 0.00 0.00 0.00 2.29
2656 3350 9.857656 ATAAGATGCATTCCTTCTAATTCTTCA 57.142 29.630 0.00 0.00 0.00 3.02
2657 3351 8.763984 AAGATGCATTCCTTCTAATTCTTCAT 57.236 30.769 0.00 0.00 0.00 2.57
2658 3352 9.857656 AAGATGCATTCCTTCTAATTCTTCATA 57.142 29.630 0.00 0.00 0.00 2.15
2659 3353 9.857656 AGATGCATTCCTTCTAATTCTTCATAA 57.142 29.630 0.00 0.00 0.00 1.90
2674 3368 7.404671 TTCTTCATAATTTCCTTGTTAGCCC 57.595 36.000 0.00 0.00 0.00 5.19
2675 3369 6.731467 TCTTCATAATTTCCTTGTTAGCCCT 58.269 36.000 0.00 0.00 0.00 5.19
2676 3370 7.182060 TCTTCATAATTTCCTTGTTAGCCCTT 58.818 34.615 0.00 0.00 0.00 3.95
2677 3371 7.339466 TCTTCATAATTTCCTTGTTAGCCCTTC 59.661 37.037 0.00 0.00 0.00 3.46
2678 3372 6.489603 TCATAATTTCCTTGTTAGCCCTTCA 58.510 36.000 0.00 0.00 0.00 3.02
2679 3373 6.603201 TCATAATTTCCTTGTTAGCCCTTCAG 59.397 38.462 0.00 0.00 0.00 3.02
2680 3374 4.657814 ATTTCCTTGTTAGCCCTTCAGA 57.342 40.909 0.00 0.00 0.00 3.27
2681 3375 4.447138 TTTCCTTGTTAGCCCTTCAGAA 57.553 40.909 0.00 0.00 0.00 3.02
2682 3376 4.447138 TTCCTTGTTAGCCCTTCAGAAA 57.553 40.909 0.00 0.00 0.00 2.52
2683 3377 4.447138 TCCTTGTTAGCCCTTCAGAAAA 57.553 40.909 0.00 0.00 0.00 2.29
2684 3378 4.798882 TCCTTGTTAGCCCTTCAGAAAAA 58.201 39.130 0.00 0.00 0.00 1.94
2706 3400 8.767478 AAAAAGAAAAGTATGCCTCATGATTG 57.233 30.769 0.00 0.00 0.00 2.67
2707 3401 5.511234 AGAAAAGTATGCCTCATGATTGC 57.489 39.130 9.76 9.76 0.00 3.56
2708 3402 4.340381 AGAAAAGTATGCCTCATGATTGCC 59.660 41.667 13.13 0.97 0.00 4.52
2709 3403 3.589951 AAGTATGCCTCATGATTGCCT 57.410 42.857 13.13 7.41 0.00 4.75
2710 3404 4.712051 AAGTATGCCTCATGATTGCCTA 57.288 40.909 13.13 6.59 0.00 3.93
2711 3405 4.923516 AGTATGCCTCATGATTGCCTAT 57.076 40.909 13.13 5.53 0.00 2.57
2712 3406 6.378661 AAGTATGCCTCATGATTGCCTATA 57.621 37.500 13.13 4.75 0.00 1.31
2713 3407 6.572182 AGTATGCCTCATGATTGCCTATAT 57.428 37.500 13.13 4.69 0.00 0.86
2714 3408 6.590068 AGTATGCCTCATGATTGCCTATATC 58.410 40.000 13.13 0.00 0.00 1.63
2715 3409 5.712084 ATGCCTCATGATTGCCTATATCT 57.288 39.130 13.13 0.00 0.00 1.98
2716 3410 5.095145 TGCCTCATGATTGCCTATATCTC 57.905 43.478 13.13 0.00 0.00 2.75
2717 3411 4.781621 TGCCTCATGATTGCCTATATCTCT 59.218 41.667 13.13 0.00 0.00 3.10
2718 3412 5.105023 TGCCTCATGATTGCCTATATCTCTC 60.105 44.000 13.13 0.00 0.00 3.20
2719 3413 5.129155 GCCTCATGATTGCCTATATCTCTCT 59.871 44.000 0.00 0.00 0.00 3.10
2720 3414 6.352051 GCCTCATGATTGCCTATATCTCTCTT 60.352 42.308 0.00 0.00 0.00 2.85
2721 3415 7.622713 CCTCATGATTGCCTATATCTCTCTTT 58.377 38.462 0.00 0.00 0.00 2.52
2722 3416 7.549842 CCTCATGATTGCCTATATCTCTCTTTG 59.450 40.741 0.00 0.00 0.00 2.77
2723 3417 7.971201 TCATGATTGCCTATATCTCTCTTTGT 58.029 34.615 0.00 0.00 0.00 2.83
2724 3418 9.093458 TCATGATTGCCTATATCTCTCTTTGTA 57.907 33.333 0.00 0.00 0.00 2.41
2725 3419 9.368674 CATGATTGCCTATATCTCTCTTTGTAG 57.631 37.037 0.00 0.00 0.00 2.74
2726 3420 8.484214 TGATTGCCTATATCTCTCTTTGTAGT 57.516 34.615 0.00 0.00 0.00 2.73
2727 3421 9.588096 TGATTGCCTATATCTCTCTTTGTAGTA 57.412 33.333 0.00 0.00 0.00 1.82
2753 3447 3.908643 AAAAGATACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
2754 3448 2.544844 AAGATACTCCCTCCGTTCCA 57.455 50.000 0.00 0.00 0.00 3.53
2755 3449 2.544844 AGATACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
2756 3450 2.829023 AGATACTCCCTCCGTTCCAAA 58.171 47.619 0.00 0.00 0.00 3.28
2757 3451 3.178865 AGATACTCCCTCCGTTCCAAAA 58.821 45.455 0.00 0.00 0.00 2.44
2758 3452 3.780850 AGATACTCCCTCCGTTCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
2759 3453 4.966805 AGATACTCCCTCCGTTCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
2760 3454 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2761 3455 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2762 3456 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2763 3457 4.227527 ACTCCCTCCGTTCCAAAATAGATT 59.772 41.667 0.00 0.00 0.00 2.40
2764 3458 5.427481 ACTCCCTCCGTTCCAAAATAGATTA 59.573 40.000 0.00 0.00 0.00 1.75
2765 3459 5.677567 TCCCTCCGTTCCAAAATAGATTAC 58.322 41.667 0.00 0.00 0.00 1.89
2766 3460 5.427481 TCCCTCCGTTCCAAAATAGATTACT 59.573 40.000 0.00 0.00 0.00 2.24
2767 3461 6.069847 TCCCTCCGTTCCAAAATAGATTACTT 60.070 38.462 0.00 0.00 0.00 2.24
2768 3462 6.602009 CCCTCCGTTCCAAAATAGATTACTTT 59.398 38.462 0.00 0.00 0.00 2.66
2769 3463 7.122204 CCCTCCGTTCCAAAATAGATTACTTTT 59.878 37.037 0.00 0.00 0.00 2.27
2770 3464 8.182227 CCTCCGTTCCAAAATAGATTACTTTTC 58.818 37.037 0.00 0.00 0.00 2.29
2771 3465 8.857694 TCCGTTCCAAAATAGATTACTTTTCT 57.142 30.769 0.00 0.00 0.00 2.52
2772 3466 8.726988 TCCGTTCCAAAATAGATTACTTTTCTG 58.273 33.333 0.00 0.00 0.00 3.02
2773 3467 7.968405 CCGTTCCAAAATAGATTACTTTTCTGG 59.032 37.037 0.00 0.00 0.00 3.86
2774 3468 8.726988 CGTTCCAAAATAGATTACTTTTCTGGA 58.273 33.333 0.00 0.00 0.00 3.86
2775 3469 9.841880 GTTCCAAAATAGATTACTTTTCTGGAC 57.158 33.333 0.00 0.00 0.00 4.02
2776 3470 9.807921 TTCCAAAATAGATTACTTTTCTGGACT 57.192 29.630 0.00 0.00 0.00 3.85
2790 3484 9.877178 ACTTTTCTGGACTAACTGATATACTTG 57.123 33.333 0.00 0.00 0.00 3.16
2791 3485 8.718102 TTTTCTGGACTAACTGATATACTTGC 57.282 34.615 0.00 0.00 0.00 4.01
2792 3486 6.406692 TCTGGACTAACTGATATACTTGCC 57.593 41.667 0.00 0.00 0.00 4.52
2793 3487 5.897250 TCTGGACTAACTGATATACTTGCCA 59.103 40.000 0.00 0.00 0.00 4.92
2794 3488 5.914033 TGGACTAACTGATATACTTGCCAC 58.086 41.667 0.00 0.00 0.00 5.01
2795 3489 5.661312 TGGACTAACTGATATACTTGCCACT 59.339 40.000 0.00 0.00 0.00 4.00
2796 3490 6.837048 TGGACTAACTGATATACTTGCCACTA 59.163 38.462 0.00 0.00 0.00 2.74
2797 3491 7.343574 TGGACTAACTGATATACTTGCCACTAA 59.656 37.037 0.00 0.00 0.00 2.24
2798 3492 8.368668 GGACTAACTGATATACTTGCCACTAAT 58.631 37.037 0.00 0.00 0.00 1.73
2799 3493 9.413048 GACTAACTGATATACTTGCCACTAATC 57.587 37.037 0.00 0.00 0.00 1.75
2800 3494 8.924303 ACTAACTGATATACTTGCCACTAATCA 58.076 33.333 0.00 0.00 0.00 2.57
2801 3495 9.764363 CTAACTGATATACTTGCCACTAATCAA 57.236 33.333 0.00 0.00 0.00 2.57
2802 3496 8.438676 AACTGATATACTTGCCACTAATCAAC 57.561 34.615 0.00 0.00 0.00 3.18
2803 3497 7.564793 ACTGATATACTTGCCACTAATCAACA 58.435 34.615 0.00 0.00 0.00 3.33
2804 3498 8.046708 ACTGATATACTTGCCACTAATCAACAA 58.953 33.333 0.00 0.00 0.00 2.83
2805 3499 8.800370 TGATATACTTGCCACTAATCAACAAA 57.200 30.769 0.00 0.00 0.00 2.83
2806 3500 9.407380 TGATATACTTGCCACTAATCAACAAAT 57.593 29.630 0.00 0.00 0.00 2.32
2809 3503 8.761575 ATACTTGCCACTAATCAACAAATTTG 57.238 30.769 16.67 16.67 0.00 2.32
2810 3504 6.581712 ACTTGCCACTAATCAACAAATTTGT 58.418 32.000 18.13 18.13 44.72 2.83
2811 3505 6.701400 ACTTGCCACTAATCAACAAATTTGTC 59.299 34.615 23.47 8.12 41.31 3.18
2812 3506 6.154203 TGCCACTAATCAACAAATTTGTCA 57.846 33.333 23.47 13.85 41.31 3.58
2813 3507 6.577103 TGCCACTAATCAACAAATTTGTCAA 58.423 32.000 23.47 14.84 41.31 3.18
2814 3508 6.700960 TGCCACTAATCAACAAATTTGTCAAG 59.299 34.615 23.47 16.01 41.31 3.02
2815 3509 6.146021 GCCACTAATCAACAAATTTGTCAAGG 59.854 38.462 23.47 16.23 41.31 3.61
2816 3510 6.646240 CCACTAATCAACAAATTTGTCAAGGG 59.354 38.462 23.47 15.91 41.31 3.95
2817 3511 7.209475 CACTAATCAACAAATTTGTCAAGGGT 58.791 34.615 23.47 14.69 41.31 4.34
2818 3512 8.356657 CACTAATCAACAAATTTGTCAAGGGTA 58.643 33.333 23.47 10.59 41.31 3.69
2819 3513 8.919145 ACTAATCAACAAATTTGTCAAGGGTAA 58.081 29.630 23.47 5.14 41.31 2.85
2820 3514 9.927668 CTAATCAACAAATTTGTCAAGGGTAAT 57.072 29.630 23.47 2.49 41.31 1.89
2822 3516 9.625747 AATCAACAAATTTGTCAAGGGTAATTT 57.374 25.926 23.47 1.23 41.31 1.82
2823 3517 8.655651 TCAACAAATTTGTCAAGGGTAATTTC 57.344 30.769 23.47 0.00 41.31 2.17
2824 3518 8.482128 TCAACAAATTTGTCAAGGGTAATTTCT 58.518 29.630 23.47 0.58 41.31 2.52
2825 3519 9.108284 CAACAAATTTGTCAAGGGTAATTTCTT 57.892 29.630 23.47 0.00 41.31 2.52
2826 3520 8.887036 ACAAATTTGTCAAGGGTAATTTCTTC 57.113 30.769 18.13 0.00 36.50 2.87
2827 3521 7.931407 ACAAATTTGTCAAGGGTAATTTCTTCC 59.069 33.333 18.13 0.00 36.50 3.46
2828 3522 7.855784 AATTTGTCAAGGGTAATTTCTTCCT 57.144 32.000 0.00 0.00 0.00 3.36
2829 3523 8.950007 AATTTGTCAAGGGTAATTTCTTCCTA 57.050 30.769 0.00 0.00 0.00 2.94
2830 3524 8.950007 ATTTGTCAAGGGTAATTTCTTCCTAA 57.050 30.769 0.00 0.00 0.00 2.69
2831 3525 7.754851 TTGTCAAGGGTAATTTCTTCCTAAC 57.245 36.000 0.00 0.00 0.00 2.34
2832 3526 7.086685 TGTCAAGGGTAATTTCTTCCTAACT 57.913 36.000 0.00 0.00 0.00 2.24
2833 3527 8.209802 TGTCAAGGGTAATTTCTTCCTAACTA 57.790 34.615 0.00 0.00 0.00 2.24
2834 3528 8.319146 TGTCAAGGGTAATTTCTTCCTAACTAG 58.681 37.037 0.00 0.00 0.00 2.57
2835 3529 8.319881 GTCAAGGGTAATTTCTTCCTAACTAGT 58.680 37.037 0.00 0.00 0.00 2.57
2836 3530 8.537858 TCAAGGGTAATTTCTTCCTAACTAGTC 58.462 37.037 0.00 0.00 0.00 2.59
2837 3531 8.541234 CAAGGGTAATTTCTTCCTAACTAGTCT 58.459 37.037 0.00 0.00 0.00 3.24
2838 3532 9.779951 AAGGGTAATTTCTTCCTAACTAGTCTA 57.220 33.333 0.00 0.00 0.00 2.59
2839 3533 9.954992 AGGGTAATTTCTTCCTAACTAGTCTAT 57.045 33.333 0.00 0.00 0.00 1.98
2851 3545 9.824216 TCCTAACTAGTCTATAATTATGTGCCT 57.176 33.333 8.28 0.00 0.00 4.75
2855 3549 8.263854 ACTAGTCTATAATTATGTGCCTTGGT 57.736 34.615 8.28 0.00 0.00 3.67
2856 3550 8.368668 ACTAGTCTATAATTATGTGCCTTGGTC 58.631 37.037 8.28 0.00 0.00 4.02
2857 3551 7.136822 AGTCTATAATTATGTGCCTTGGTCA 57.863 36.000 8.28 0.00 0.00 4.02
2858 3552 6.992715 AGTCTATAATTATGTGCCTTGGTCAC 59.007 38.462 8.28 7.09 35.14 3.67
2859 3553 6.204882 GTCTATAATTATGTGCCTTGGTCACC 59.795 42.308 8.28 0.00 33.71 4.02
2860 3554 1.750193 ATTATGTGCCTTGGTCACCG 58.250 50.000 10.19 0.00 33.71 4.94
2861 3555 0.398696 TTATGTGCCTTGGTCACCGT 59.601 50.000 10.19 4.32 33.71 4.83
2862 3556 0.321210 TATGTGCCTTGGTCACCGTG 60.321 55.000 10.19 0.00 33.71 4.94
2863 3557 3.660111 GTGCCTTGGTCACCGTGC 61.660 66.667 0.00 0.00 0.00 5.34
2864 3558 4.947147 TGCCTTGGTCACCGTGCC 62.947 66.667 0.00 0.00 0.00 5.01
2866 3560 4.308458 CCTTGGTCACCGTGCCGA 62.308 66.667 0.00 0.00 0.00 5.54
2867 3561 2.280524 CTTGGTCACCGTGCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
2868 3562 1.890041 CTTGGTCACCGTGCCGAAA 60.890 57.895 0.00 0.00 0.00 3.46
2869 3563 1.440938 CTTGGTCACCGTGCCGAAAA 61.441 55.000 0.00 0.00 0.00 2.29
2870 3564 0.820074 TTGGTCACCGTGCCGAAAAT 60.820 50.000 0.00 0.00 0.00 1.82
2871 3565 0.035036 TGGTCACCGTGCCGAAAATA 59.965 50.000 0.00 0.00 0.00 1.40
2872 3566 1.158434 GGTCACCGTGCCGAAAATAA 58.842 50.000 0.00 0.00 0.00 1.40
2873 3567 1.741145 GGTCACCGTGCCGAAAATAAT 59.259 47.619 0.00 0.00 0.00 1.28
2874 3568 2.937799 GGTCACCGTGCCGAAAATAATA 59.062 45.455 0.00 0.00 0.00 0.98
2875 3569 3.242511 GGTCACCGTGCCGAAAATAATAC 60.243 47.826 0.00 0.00 0.00 1.89
2876 3570 3.371591 GTCACCGTGCCGAAAATAATACA 59.628 43.478 0.00 0.00 0.00 2.29
2877 3571 3.371591 TCACCGTGCCGAAAATAATACAC 59.628 43.478 0.00 0.00 0.00 2.90
2878 3572 2.679336 ACCGTGCCGAAAATAATACACC 59.321 45.455 0.00 0.00 0.00 4.16
2879 3573 2.940410 CCGTGCCGAAAATAATACACCT 59.060 45.455 0.00 0.00 0.00 4.00
2880 3574 3.375922 CCGTGCCGAAAATAATACACCTT 59.624 43.478 0.00 0.00 0.00 3.50
2881 3575 4.571580 CCGTGCCGAAAATAATACACCTTA 59.428 41.667 0.00 0.00 0.00 2.69
2882 3576 5.495502 CGTGCCGAAAATAATACACCTTAC 58.504 41.667 0.00 0.00 0.00 2.34
2883 3577 5.063691 CGTGCCGAAAATAATACACCTTACA 59.936 40.000 0.00 0.00 0.00 2.41
2884 3578 6.238266 CGTGCCGAAAATAATACACCTTACAT 60.238 38.462 0.00 0.00 0.00 2.29
2885 3579 7.042590 CGTGCCGAAAATAATACACCTTACATA 60.043 37.037 0.00 0.00 0.00 2.29
2886 3580 8.614346 GTGCCGAAAATAATACACCTTACATAA 58.386 33.333 0.00 0.00 0.00 1.90
2887 3581 9.175312 TGCCGAAAATAATACACCTTACATAAA 57.825 29.630 0.00 0.00 0.00 1.40
2888 3582 9.659830 GCCGAAAATAATACACCTTACATAAAG 57.340 33.333 0.00 0.00 34.73 1.85
2923 3617 8.077386 GGAGTATTACCGAAAAATGTTTTCACA 58.923 33.333 12.53 0.00 37.31 3.58
2927 3621 2.217620 CCGAAAAATGTTTTCACACCGC 59.782 45.455 12.53 0.00 35.03 5.68
2977 3717 1.225637 CGATACAAACGCACGCCAC 60.226 57.895 0.00 0.00 0.00 5.01
2988 3730 3.199190 ACGCCACCACAACACACG 61.199 61.111 0.00 0.00 0.00 4.49
2994 3736 1.672682 ACCACAACACACGCACACA 60.673 52.632 0.00 0.00 0.00 3.72
2996 3738 1.643868 CCACAACACACGCACACACT 61.644 55.000 0.00 0.00 0.00 3.55
2997 3739 0.247655 CACAACACACGCACACACTC 60.248 55.000 0.00 0.00 0.00 3.51
3000 3742 1.089481 AACACACGCACACACTCAGG 61.089 55.000 0.00 0.00 0.00 3.86
3001 3743 1.227234 CACACGCACACACTCAGGA 60.227 57.895 0.00 0.00 0.00 3.86
3002 3744 1.227263 ACACGCACACACTCAGGAC 60.227 57.895 0.00 0.00 0.00 3.85
3003 3745 1.227234 CACGCACACACTCAGGACA 60.227 57.895 0.00 0.00 0.00 4.02
3004 3746 0.601046 CACGCACACACTCAGGACAT 60.601 55.000 0.00 0.00 0.00 3.06
3053 3795 1.079127 CTCCTAGCACAACCACGGG 60.079 63.158 0.00 0.00 0.00 5.28
3073 3816 2.289945 GGGAAGAGATGAAGCCGCATAT 60.290 50.000 0.00 0.00 0.00 1.78
3178 3921 2.462456 TCTCTTGTGCCATCTGTCAC 57.538 50.000 0.00 0.00 0.00 3.67
3320 4063 7.761409 ACTGTACATATGTTGCATTTTTCGAT 58.239 30.769 14.77 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.899393 ACTTATTTGTCTTCAGGCATTCAA 57.101 33.333 0.00 0.00 0.00 2.69
48 49 7.680730 TCTTTCTAAACTCAGATAACTTGGCT 58.319 34.615 0.00 0.00 0.00 4.75
75 76 6.368791 TGGTGAGACGAGTAATCTTGAAATTG 59.631 38.462 0.00 0.00 0.00 2.32
82 83 2.826128 TGCTGGTGAGACGAGTAATCTT 59.174 45.455 0.00 0.00 0.00 2.40
89 90 1.739562 GGCTTGCTGGTGAGACGAG 60.740 63.158 0.00 0.00 0.00 4.18
92 93 0.035630 ATGAGGCTTGCTGGTGAGAC 60.036 55.000 0.00 0.00 0.00 3.36
93 94 0.251354 GATGAGGCTTGCTGGTGAGA 59.749 55.000 0.00 0.00 0.00 3.27
94 95 0.035725 TGATGAGGCTTGCTGGTGAG 60.036 55.000 0.00 0.00 0.00 3.51
95 96 0.401356 TTGATGAGGCTTGCTGGTGA 59.599 50.000 0.00 0.00 0.00 4.02
98 99 3.005472 CCATTATTGATGAGGCTTGCTGG 59.995 47.826 0.00 0.00 38.03 4.85
101 102 2.363038 TGCCATTATTGATGAGGCTTGC 59.637 45.455 0.00 0.00 45.42 4.01
102 103 4.659111 TTGCCATTATTGATGAGGCTTG 57.341 40.909 0.00 0.00 45.42 4.01
108 109 7.381948 GCGTTGATTATTTGCCATTATTGATGA 59.618 33.333 0.00 0.00 38.03 2.92
140 141 0.249405 CAACAACCACCACCATGCAC 60.249 55.000 0.00 0.00 0.00 4.57
303 304 3.399644 TCCACCTCCTAACCCAAAAATGA 59.600 43.478 0.00 0.00 0.00 2.57
304 305 3.763897 CTCCACCTCCTAACCCAAAAATG 59.236 47.826 0.00 0.00 0.00 2.32
305 306 3.660669 TCTCCACCTCCTAACCCAAAAAT 59.339 43.478 0.00 0.00 0.00 1.82
306 307 3.057586 TCTCCACCTCCTAACCCAAAAA 58.942 45.455 0.00 0.00 0.00 1.94
307 308 2.374170 GTCTCCACCTCCTAACCCAAAA 59.626 50.000 0.00 0.00 0.00 2.44
308 309 1.982958 GTCTCCACCTCCTAACCCAAA 59.017 52.381 0.00 0.00 0.00 3.28
309 310 1.151413 AGTCTCCACCTCCTAACCCAA 59.849 52.381 0.00 0.00 0.00 4.12
310 311 0.790993 AGTCTCCACCTCCTAACCCA 59.209 55.000 0.00 0.00 0.00 4.51
311 312 1.196012 CAGTCTCCACCTCCTAACCC 58.804 60.000 0.00 0.00 0.00 4.11
312 313 2.233305 TCAGTCTCCACCTCCTAACC 57.767 55.000 0.00 0.00 0.00 2.85
313 314 3.432378 TCTTCAGTCTCCACCTCCTAAC 58.568 50.000 0.00 0.00 0.00 2.34
314 315 3.827817 TCTTCAGTCTCCACCTCCTAA 57.172 47.619 0.00 0.00 0.00 2.69
315 316 3.269643 TGATCTTCAGTCTCCACCTCCTA 59.730 47.826 0.00 0.00 0.00 2.94
316 317 2.043664 TGATCTTCAGTCTCCACCTCCT 59.956 50.000 0.00 0.00 0.00 3.69
317 318 2.461695 TGATCTTCAGTCTCCACCTCC 58.538 52.381 0.00 0.00 0.00 4.30
318 319 4.692228 GAATGATCTTCAGTCTCCACCTC 58.308 47.826 0.00 0.00 38.34 3.85
319 320 4.751767 GAATGATCTTCAGTCTCCACCT 57.248 45.455 0.00 0.00 38.34 4.00
326 327 5.819901 CCTAACCCAAGAATGATCTTCAGTC 59.180 44.000 0.00 0.00 44.11 3.51
327 328 5.488919 TCCTAACCCAAGAATGATCTTCAGT 59.511 40.000 0.00 0.00 44.11 3.41
328 329 5.994250 TCCTAACCCAAGAATGATCTTCAG 58.006 41.667 0.00 0.00 44.11 3.02
329 330 5.104360 CCTCCTAACCCAAGAATGATCTTCA 60.104 44.000 0.00 0.00 44.11 3.02
330 331 5.104318 ACCTCCTAACCCAAGAATGATCTTC 60.104 44.000 0.00 0.00 44.11 2.87
331 332 4.790790 ACCTCCTAACCCAAGAATGATCTT 59.209 41.667 0.00 0.00 46.91 2.40
332 333 4.164988 CACCTCCTAACCCAAGAATGATCT 59.835 45.833 0.00 0.00 37.57 2.75
333 334 4.455606 CACCTCCTAACCCAAGAATGATC 58.544 47.826 0.00 0.00 0.00 2.92
334 335 3.203040 CCACCTCCTAACCCAAGAATGAT 59.797 47.826 0.00 0.00 0.00 2.45
374 375 6.365520 ACTTCTACTCCCTTGTTTCAATTGT 58.634 36.000 5.13 0.00 0.00 2.71
434 435 2.820922 GTAACCGCCCGCCGATTT 60.821 61.111 0.00 0.00 40.02 2.17
450 451 3.072476 TGAGGATTTCAAAGAGGGTTCGT 59.928 43.478 0.00 0.00 31.34 3.85
586 605 3.261897 CCCACTCATGTATATGGACCTCC 59.738 52.174 0.00 0.00 33.80 4.30
643 787 4.712337 CCCCACTCATGTATATAGACCTCC 59.288 50.000 0.00 0.00 0.00 4.30
644 788 5.580998 TCCCCACTCATGTATATAGACCTC 58.419 45.833 0.00 0.00 0.00 3.85
645 789 5.076598 ACTCCCCACTCATGTATATAGACCT 59.923 44.000 0.00 0.00 0.00 3.85
647 791 6.919775 AACTCCCCACTCATGTATATAGAC 57.080 41.667 0.00 0.00 0.00 2.59
648 792 7.766628 AGTAACTCCCCACTCATGTATATAGA 58.233 38.462 0.00 0.00 0.00 1.98
649 793 8.423906 AAGTAACTCCCCACTCATGTATATAG 57.576 38.462 0.00 0.00 0.00 1.31
651 795 8.011290 AGTAAGTAACTCCCCACTCATGTATAT 58.989 37.037 0.00 0.00 30.33 0.86
652 796 7.359849 AGTAAGTAACTCCCCACTCATGTATA 58.640 38.462 0.00 0.00 30.33 1.47
666 820 8.751242 AGGAGGATTTGAAGTAGTAAGTAACTC 58.249 37.037 0.00 0.00 39.80 3.01
671 825 6.023603 TGGAGGAGGATTTGAAGTAGTAAGT 58.976 40.000 0.00 0.00 0.00 2.24
695 849 0.839946 GTACACCTCCATGGCTCCAT 59.160 55.000 6.96 0.00 40.22 3.41
696 850 0.546507 TGTACACCTCCATGGCTCCA 60.547 55.000 6.96 0.00 40.22 3.86
697 851 0.107654 GTGTACACCTCCATGGCTCC 60.108 60.000 15.42 0.00 40.22 4.70
698 852 0.613260 TGTGTACACCTCCATGGCTC 59.387 55.000 22.91 0.00 40.22 4.70
699 853 1.065199 CATGTGTACACCTCCATGGCT 60.065 52.381 22.91 0.00 40.22 4.75
700 854 1.382522 CATGTGTACACCTCCATGGC 58.617 55.000 22.91 0.00 40.22 4.40
893 1047 8.037758 CCTATATATACAGGAAGCCACAAGAAG 58.962 40.741 0.19 0.00 33.42 2.85
1041 1197 2.972505 AAGAGTGCCGTGGTTGCG 60.973 61.111 0.00 0.00 0.00 4.85
1333 2016 3.068691 TGGAAGGACGAGGGCGAG 61.069 66.667 0.00 0.00 41.64 5.03
1354 2037 2.899256 CCTGGATTTCTTGGCCTTTGAA 59.101 45.455 3.32 2.73 0.00 2.69
1357 2040 1.942776 CCCTGGATTTCTTGGCCTTT 58.057 50.000 3.32 0.00 0.00 3.11
1588 2274 3.253188 TGCTGGAAGTTCATGTACTTTGC 59.747 43.478 17.52 19.41 38.43 3.68
1602 2288 3.319122 ACAAGTAAAGGCTTTGCTGGAAG 59.681 43.478 31.25 21.79 35.71 3.46
1621 2307 3.744559 GCTGGGCGTCAGAAACAA 58.255 55.556 11.18 0.00 46.18 2.83
1677 2363 2.931105 TGCTTCTTGGGGCCCGTA 60.931 61.111 19.83 7.64 0.00 4.02
1782 2476 0.179225 CCGCATTCTTGAAACCGACG 60.179 55.000 7.31 0.00 0.00 5.12
1868 2562 2.125147 GGCTGCCGTAGTCATGCA 60.125 61.111 1.35 0.00 0.00 3.96
2209 2903 4.197750 TCTTCTACGTCCTCGCTATCTTT 58.802 43.478 0.00 0.00 41.18 2.52
2390 3084 6.670695 AAGCCCAATAATTCTCTGTGTTTT 57.329 33.333 0.00 0.00 0.00 2.43
2483 3177 7.825331 TTTCCACATTGGTCAATTAACACTA 57.175 32.000 0.00 0.00 39.03 2.74
2521 3215 2.606725 CTCAAGCGTAAAGAGGCATCAG 59.393 50.000 0.00 0.00 38.98 2.90
2535 3229 2.693797 AATTTCACAGTGCTCAAGCG 57.306 45.000 0.00 0.00 45.83 4.68
2574 3268 8.854117 TCTTATATAAAGAAACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2575 3269 9.597681 ATCTTATATAAAGAAACGGAGGGAGTA 57.402 33.333 0.00 0.00 0.00 2.59
2576 3270 7.909485 TCTTATATAAAGAAACGGAGGGAGT 57.091 36.000 0.00 0.00 0.00 3.85
2577 3271 8.368668 ACATCTTATATAAAGAAACGGAGGGAG 58.631 37.037 0.00 0.00 0.00 4.30
2578 3272 8.258850 ACATCTTATATAAAGAAACGGAGGGA 57.741 34.615 0.00 0.00 0.00 4.20
2630 3324 9.857656 TGAAGAATTAGAAGGAATGCATCTTAT 57.142 29.630 0.00 0.00 0.00 1.73
2631 3325 9.857656 ATGAAGAATTAGAAGGAATGCATCTTA 57.142 29.630 0.00 0.00 0.00 2.10
2632 3326 8.763984 ATGAAGAATTAGAAGGAATGCATCTT 57.236 30.769 0.00 0.00 0.00 2.40
2633 3327 9.857656 TTATGAAGAATTAGAAGGAATGCATCT 57.142 29.630 0.00 0.00 0.00 2.90
2648 3342 8.478066 GGGCTAACAAGGAAATTATGAAGAATT 58.522 33.333 0.00 0.00 0.00 2.17
2649 3343 7.841222 AGGGCTAACAAGGAAATTATGAAGAAT 59.159 33.333 0.00 0.00 0.00 2.40
2650 3344 7.182060 AGGGCTAACAAGGAAATTATGAAGAA 58.818 34.615 0.00 0.00 0.00 2.52
2651 3345 6.731467 AGGGCTAACAAGGAAATTATGAAGA 58.269 36.000 0.00 0.00 0.00 2.87
2652 3346 7.122650 TGAAGGGCTAACAAGGAAATTATGAAG 59.877 37.037 0.00 0.00 0.00 3.02
2653 3347 6.951198 TGAAGGGCTAACAAGGAAATTATGAA 59.049 34.615 0.00 0.00 0.00 2.57
2654 3348 6.489603 TGAAGGGCTAACAAGGAAATTATGA 58.510 36.000 0.00 0.00 0.00 2.15
2655 3349 6.603201 TCTGAAGGGCTAACAAGGAAATTATG 59.397 38.462 0.00 0.00 0.00 1.90
2656 3350 6.731467 TCTGAAGGGCTAACAAGGAAATTAT 58.269 36.000 0.00 0.00 0.00 1.28
2657 3351 6.134535 TCTGAAGGGCTAACAAGGAAATTA 57.865 37.500 0.00 0.00 0.00 1.40
2658 3352 4.998051 TCTGAAGGGCTAACAAGGAAATT 58.002 39.130 0.00 0.00 0.00 1.82
2659 3353 4.657814 TCTGAAGGGCTAACAAGGAAAT 57.342 40.909 0.00 0.00 0.00 2.17
2660 3354 4.447138 TTCTGAAGGGCTAACAAGGAAA 57.553 40.909 0.00 0.00 0.00 3.13
2661 3355 4.447138 TTTCTGAAGGGCTAACAAGGAA 57.553 40.909 0.00 0.00 0.00 3.36
2662 3356 4.447138 TTTTCTGAAGGGCTAACAAGGA 57.553 40.909 0.00 0.00 0.00 3.36
2681 3375 7.332678 GCAATCATGAGGCATACTTTTCTTTTT 59.667 33.333 15.19 0.00 0.00 1.94
2682 3376 6.815142 GCAATCATGAGGCATACTTTTCTTTT 59.185 34.615 15.19 0.00 0.00 2.27
2683 3377 6.335777 GCAATCATGAGGCATACTTTTCTTT 58.664 36.000 15.19 0.00 0.00 2.52
2684 3378 5.163478 GGCAATCATGAGGCATACTTTTCTT 60.163 40.000 19.99 0.00 0.00 2.52
2685 3379 4.340381 GGCAATCATGAGGCATACTTTTCT 59.660 41.667 19.99 0.00 0.00 2.52
2686 3380 4.340381 AGGCAATCATGAGGCATACTTTTC 59.660 41.667 19.99 4.30 0.00 2.29
2687 3381 4.284178 AGGCAATCATGAGGCATACTTTT 58.716 39.130 19.99 0.00 0.00 2.27
2688 3382 3.907221 AGGCAATCATGAGGCATACTTT 58.093 40.909 19.99 0.00 0.00 2.66
2689 3383 3.589951 AGGCAATCATGAGGCATACTT 57.410 42.857 19.99 0.00 0.00 2.24
2690 3384 4.923516 ATAGGCAATCATGAGGCATACT 57.076 40.909 19.99 12.24 0.00 2.12
2691 3385 6.590068 AGATATAGGCAATCATGAGGCATAC 58.410 40.000 19.99 8.79 0.00 2.39
2692 3386 6.614496 AGAGATATAGGCAATCATGAGGCATA 59.386 38.462 19.99 17.91 0.00 3.14
2693 3387 5.429109 AGAGATATAGGCAATCATGAGGCAT 59.571 40.000 19.99 16.56 0.00 4.40
2694 3388 4.781621 AGAGATATAGGCAATCATGAGGCA 59.218 41.667 19.99 4.95 0.00 4.75
2695 3389 5.129155 AGAGAGATATAGGCAATCATGAGGC 59.871 44.000 12.46 12.46 0.00 4.70
2696 3390 6.795144 AGAGAGATATAGGCAATCATGAGG 57.205 41.667 0.09 0.00 0.00 3.86
2697 3391 8.095792 ACAAAGAGAGATATAGGCAATCATGAG 58.904 37.037 0.09 0.00 0.00 2.90
2698 3392 7.971201 ACAAAGAGAGATATAGGCAATCATGA 58.029 34.615 0.00 0.00 0.00 3.07
2699 3393 9.368674 CTACAAAGAGAGATATAGGCAATCATG 57.631 37.037 0.00 0.00 0.00 3.07
2700 3394 9.099071 ACTACAAAGAGAGATATAGGCAATCAT 57.901 33.333 0.00 0.00 0.00 2.45
2701 3395 8.484214 ACTACAAAGAGAGATATAGGCAATCA 57.516 34.615 0.00 0.00 0.00 2.57
2732 3426 3.585732 TGGAACGGAGGGAGTATCTTTTT 59.414 43.478 0.00 0.00 33.73 1.94
2733 3427 3.178865 TGGAACGGAGGGAGTATCTTTT 58.821 45.455 0.00 0.00 33.73 2.27
2734 3428 2.829023 TGGAACGGAGGGAGTATCTTT 58.171 47.619 0.00 0.00 33.73 2.52
2735 3429 2.544844 TGGAACGGAGGGAGTATCTT 57.455 50.000 0.00 0.00 33.73 2.40
2736 3430 2.544844 TTGGAACGGAGGGAGTATCT 57.455 50.000 0.00 0.00 33.73 1.98
2737 3431 3.622166 TTTTGGAACGGAGGGAGTATC 57.378 47.619 0.00 0.00 0.00 2.24
2738 3432 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
2739 3433 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2740 3434 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2741 3435 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2742 3436 4.855298 AATCTATTTTGGAACGGAGGGA 57.145 40.909 0.00 0.00 0.00 4.20
2743 3437 5.681639 AGTAATCTATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2744 3438 7.625828 AAAGTAATCTATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2745 3439 8.947115 AGAAAAGTAATCTATTTTGGAACGGAG 58.053 33.333 0.00 0.00 0.00 4.63
2746 3440 8.726988 CAGAAAAGTAATCTATTTTGGAACGGA 58.273 33.333 0.00 0.00 0.00 4.69
2747 3441 7.968405 CCAGAAAAGTAATCTATTTTGGAACGG 59.032 37.037 0.00 0.00 0.00 4.44
2748 3442 8.726988 TCCAGAAAAGTAATCTATTTTGGAACG 58.273 33.333 0.00 0.00 0.00 3.95
2749 3443 9.841880 GTCCAGAAAAGTAATCTATTTTGGAAC 57.158 33.333 0.00 0.00 31.46 3.62
2750 3444 9.807921 AGTCCAGAAAAGTAATCTATTTTGGAA 57.192 29.630 0.00 0.00 31.46 3.53
2764 3458 9.877178 CAAGTATATCAGTTAGTCCAGAAAAGT 57.123 33.333 0.00 0.00 0.00 2.66
2765 3459 8.821894 GCAAGTATATCAGTTAGTCCAGAAAAG 58.178 37.037 0.00 0.00 0.00 2.27
2766 3460 7.769044 GGCAAGTATATCAGTTAGTCCAGAAAA 59.231 37.037 0.00 0.00 0.00 2.29
2767 3461 7.093068 TGGCAAGTATATCAGTTAGTCCAGAAA 60.093 37.037 0.00 0.00 0.00 2.52
2768 3462 6.382859 TGGCAAGTATATCAGTTAGTCCAGAA 59.617 38.462 0.00 0.00 0.00 3.02
2769 3463 5.897250 TGGCAAGTATATCAGTTAGTCCAGA 59.103 40.000 0.00 0.00 0.00 3.86
2770 3464 5.986135 GTGGCAAGTATATCAGTTAGTCCAG 59.014 44.000 0.00 0.00 0.00 3.86
2771 3465 5.661312 AGTGGCAAGTATATCAGTTAGTCCA 59.339 40.000 0.00 0.00 0.00 4.02
2772 3466 6.163135 AGTGGCAAGTATATCAGTTAGTCC 57.837 41.667 0.00 0.00 0.00 3.85
2773 3467 9.413048 GATTAGTGGCAAGTATATCAGTTAGTC 57.587 37.037 0.00 0.00 0.00 2.59
2774 3468 8.924303 TGATTAGTGGCAAGTATATCAGTTAGT 58.076 33.333 0.00 0.00 0.00 2.24
2775 3469 9.764363 TTGATTAGTGGCAAGTATATCAGTTAG 57.236 33.333 0.00 0.00 0.00 2.34
2776 3470 9.542462 GTTGATTAGTGGCAAGTATATCAGTTA 57.458 33.333 0.00 0.00 0.00 2.24
2777 3471 8.046708 TGTTGATTAGTGGCAAGTATATCAGTT 58.953 33.333 0.00 0.00 0.00 3.16
2778 3472 7.564793 TGTTGATTAGTGGCAAGTATATCAGT 58.435 34.615 0.00 0.00 0.00 3.41
2779 3473 8.437360 TTGTTGATTAGTGGCAAGTATATCAG 57.563 34.615 0.00 0.00 0.00 2.90
2780 3474 8.800370 TTTGTTGATTAGTGGCAAGTATATCA 57.200 30.769 0.00 0.00 0.00 2.15
2783 3477 9.853555 CAAATTTGTTGATTAGTGGCAAGTATA 57.146 29.630 10.15 0.00 0.00 1.47
2784 3478 8.367156 ACAAATTTGTTGATTAGTGGCAAGTAT 58.633 29.630 18.13 0.00 38.47 2.12
2785 3479 7.721402 ACAAATTTGTTGATTAGTGGCAAGTA 58.279 30.769 18.13 0.00 38.47 2.24
2786 3480 6.581712 ACAAATTTGTTGATTAGTGGCAAGT 58.418 32.000 18.13 0.00 38.47 3.16
2787 3481 6.700960 TGACAAATTTGTTGATTAGTGGCAAG 59.299 34.615 24.02 0.00 42.43 4.01
2788 3482 6.577103 TGACAAATTTGTTGATTAGTGGCAA 58.423 32.000 24.02 0.00 42.43 4.52
2789 3483 6.154203 TGACAAATTTGTTGATTAGTGGCA 57.846 33.333 24.02 10.90 42.43 4.92
2790 3484 6.146021 CCTTGACAAATTTGTTGATTAGTGGC 59.854 38.462 24.02 8.54 42.43 5.01
2791 3485 6.646240 CCCTTGACAAATTTGTTGATTAGTGG 59.354 38.462 24.02 15.90 42.43 4.00
2792 3486 7.209475 ACCCTTGACAAATTTGTTGATTAGTG 58.791 34.615 24.02 11.10 42.43 2.74
2793 3487 7.360113 ACCCTTGACAAATTTGTTGATTAGT 57.640 32.000 24.02 14.51 42.43 2.24
2794 3488 9.927668 ATTACCCTTGACAAATTTGTTGATTAG 57.072 29.630 24.02 15.48 42.43 1.73
2796 3490 9.625747 AAATTACCCTTGACAAATTTGTTGATT 57.374 25.926 24.02 12.52 42.43 2.57
2797 3491 9.271828 GAAATTACCCTTGACAAATTTGTTGAT 57.728 29.630 24.02 7.46 42.43 2.57
2798 3492 8.482128 AGAAATTACCCTTGACAAATTTGTTGA 58.518 29.630 24.02 14.58 42.43 3.18
2799 3493 8.661352 AGAAATTACCCTTGACAAATTTGTTG 57.339 30.769 24.02 16.32 42.43 3.33
2800 3494 9.325198 GAAGAAATTACCCTTGACAAATTTGTT 57.675 29.630 24.02 10.32 42.43 2.83
2801 3495 7.931407 GGAAGAAATTACCCTTGACAAATTTGT 59.069 33.333 23.49 23.49 45.65 2.83
2802 3496 8.150296 AGGAAGAAATTACCCTTGACAAATTTG 58.850 33.333 16.67 16.67 33.03 2.32
2803 3497 8.262601 AGGAAGAAATTACCCTTGACAAATTT 57.737 30.769 0.00 0.00 34.98 1.82
2804 3498 7.855784 AGGAAGAAATTACCCTTGACAAATT 57.144 32.000 0.00 0.00 0.00 1.82
2805 3499 8.803235 GTTAGGAAGAAATTACCCTTGACAAAT 58.197 33.333 0.00 0.00 0.00 2.32
2806 3500 8.002459 AGTTAGGAAGAAATTACCCTTGACAAA 58.998 33.333 0.00 0.00 0.00 2.83
2807 3501 7.523415 AGTTAGGAAGAAATTACCCTTGACAA 58.477 34.615 0.00 0.00 0.00 3.18
2808 3502 7.086685 AGTTAGGAAGAAATTACCCTTGACA 57.913 36.000 0.00 0.00 0.00 3.58
2809 3503 8.319881 ACTAGTTAGGAAGAAATTACCCTTGAC 58.680 37.037 0.00 0.00 0.00 3.18
2810 3504 8.445361 ACTAGTTAGGAAGAAATTACCCTTGA 57.555 34.615 0.00 0.00 0.00 3.02
2811 3505 8.541234 AGACTAGTTAGGAAGAAATTACCCTTG 58.459 37.037 0.00 0.00 0.00 3.61
2812 3506 8.682297 AGACTAGTTAGGAAGAAATTACCCTT 57.318 34.615 0.00 0.00 0.00 3.95
2813 3507 9.954992 ATAGACTAGTTAGGAAGAAATTACCCT 57.045 33.333 0.00 0.00 0.00 4.34
2825 3519 9.824216 AGGCACATAATTATAGACTAGTTAGGA 57.176 33.333 0.00 0.00 0.00 2.94
2829 3523 8.714906 ACCAAGGCACATAATTATAGACTAGTT 58.285 33.333 0.00 0.00 0.00 2.24
2830 3524 8.263854 ACCAAGGCACATAATTATAGACTAGT 57.736 34.615 0.00 0.00 0.00 2.57
2831 3525 8.367911 TGACCAAGGCACATAATTATAGACTAG 58.632 37.037 6.01 4.48 0.00 2.57
2832 3526 8.148351 GTGACCAAGGCACATAATTATAGACTA 58.852 37.037 6.01 0.00 36.31 2.59
2833 3527 6.992715 GTGACCAAGGCACATAATTATAGACT 59.007 38.462 0.00 0.00 36.31 3.24
2834 3528 6.204882 GGTGACCAAGGCACATAATTATAGAC 59.795 42.308 2.52 0.00 37.99 2.59
2835 3529 6.296026 GGTGACCAAGGCACATAATTATAGA 58.704 40.000 2.52 0.00 37.99 1.98
2836 3530 5.179368 CGGTGACCAAGGCACATAATTATAG 59.821 44.000 1.11 0.00 37.99 1.31
2837 3531 5.060506 CGGTGACCAAGGCACATAATTATA 58.939 41.667 1.11 0.00 37.99 0.98
2838 3532 3.882888 CGGTGACCAAGGCACATAATTAT 59.117 43.478 1.11 0.00 37.99 1.28
2839 3533 3.275143 CGGTGACCAAGGCACATAATTA 58.725 45.455 1.11 0.00 37.99 1.40
2840 3534 2.091541 CGGTGACCAAGGCACATAATT 58.908 47.619 1.11 0.00 37.99 1.40
2841 3535 1.004277 ACGGTGACCAAGGCACATAAT 59.996 47.619 1.11 0.00 37.99 1.28
2842 3536 0.398696 ACGGTGACCAAGGCACATAA 59.601 50.000 1.11 0.00 37.99 1.90
2843 3537 0.321210 CACGGTGACCAAGGCACATA 60.321 55.000 0.74 0.00 37.99 2.29
2844 3538 1.600636 CACGGTGACCAAGGCACAT 60.601 57.895 0.74 0.00 37.99 3.21
2845 3539 2.203139 CACGGTGACCAAGGCACA 60.203 61.111 0.74 0.54 37.99 4.57
2846 3540 3.660111 GCACGGTGACCAAGGCAC 61.660 66.667 13.29 0.00 35.56 5.01
2847 3541 4.947147 GGCACGGTGACCAAGGCA 62.947 66.667 13.29 0.00 0.00 4.75
2860 3554 6.425577 TGTAAGGTGTATTATTTTCGGCAC 57.574 37.500 0.00 0.00 0.00 5.01
2861 3555 8.734218 TTATGTAAGGTGTATTATTTTCGGCA 57.266 30.769 0.00 0.00 0.00 5.69
2862 3556 9.659830 CTTTATGTAAGGTGTATTATTTTCGGC 57.340 33.333 0.00 0.00 0.00 5.54
2878 3572 6.301169 ACTCCCTCTGTTCCTTTATGTAAG 57.699 41.667 0.00 0.00 0.00 2.34
2879 3573 7.989947 ATACTCCCTCTGTTCCTTTATGTAA 57.010 36.000 0.00 0.00 0.00 2.41
2880 3574 7.989947 AATACTCCCTCTGTTCCTTTATGTA 57.010 36.000 0.00 0.00 0.00 2.29
2881 3575 6.893020 AATACTCCCTCTGTTCCTTTATGT 57.107 37.500 0.00 0.00 0.00 2.29
2882 3576 7.217906 GGTAATACTCCCTCTGTTCCTTTATG 58.782 42.308 0.00 0.00 0.00 1.90
2883 3577 6.041751 CGGTAATACTCCCTCTGTTCCTTTAT 59.958 42.308 0.00 0.00 0.00 1.40
2884 3578 5.361857 CGGTAATACTCCCTCTGTTCCTTTA 59.638 44.000 0.00 0.00 0.00 1.85
2885 3579 4.161754 CGGTAATACTCCCTCTGTTCCTTT 59.838 45.833 0.00 0.00 0.00 3.11
2886 3580 3.705072 CGGTAATACTCCCTCTGTTCCTT 59.295 47.826 0.00 0.00 0.00 3.36
2887 3581 3.053095 TCGGTAATACTCCCTCTGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
2888 3582 3.294214 TCGGTAATACTCCCTCTGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2889 3583 4.996788 TTCGGTAATACTCCCTCTGTTC 57.003 45.455 0.00 0.00 0.00 3.18
2890 3584 5.750352 TTTTCGGTAATACTCCCTCTGTT 57.250 39.130 0.00 0.00 0.00 3.16
2891 3585 5.750352 TTTTTCGGTAATACTCCCTCTGT 57.250 39.130 0.00 0.00 0.00 3.41
2892 3586 6.113411 ACATTTTTCGGTAATACTCCCTCTG 58.887 40.000 0.00 0.00 0.00 3.35
2893 3587 6.309389 ACATTTTTCGGTAATACTCCCTCT 57.691 37.500 0.00 0.00 0.00 3.69
2894 3588 6.997239 AACATTTTTCGGTAATACTCCCTC 57.003 37.500 0.00 0.00 0.00 4.30
2895 3589 7.449086 TGAAAACATTTTTCGGTAATACTCCCT 59.551 33.333 6.85 0.00 0.00 4.20
2896 3590 7.539710 GTGAAAACATTTTTCGGTAATACTCCC 59.460 37.037 6.85 0.00 0.00 4.30
2897 3591 8.077386 TGTGAAAACATTTTTCGGTAATACTCC 58.923 33.333 6.85 0.00 0.00 3.85
2898 3592 8.898792 GTGTGAAAACATTTTTCGGTAATACTC 58.101 33.333 6.85 0.00 0.00 2.59
2899 3593 7.863877 GGTGTGAAAACATTTTTCGGTAATACT 59.136 33.333 6.85 0.00 0.00 2.12
2900 3594 7.149096 CGGTGTGAAAACATTTTTCGGTAATAC 60.149 37.037 6.85 0.51 0.00 1.89
2977 3717 1.226267 GTGTGTGCGTGTGTTGTGG 60.226 57.895 0.00 0.00 0.00 4.17
2988 3730 2.105006 ATCATGTCCTGAGTGTGTGC 57.895 50.000 0.00 0.00 37.28 4.57
2994 3736 3.256879 CGCCTATGTATCATGTCCTGAGT 59.743 47.826 0.00 0.00 37.28 3.41
2996 3738 2.029020 GCGCCTATGTATCATGTCCTGA 60.029 50.000 0.00 0.00 38.53 3.86
2997 3739 2.028658 AGCGCCTATGTATCATGTCCTG 60.029 50.000 2.29 0.00 0.00 3.86
3000 3742 3.249091 CTCAGCGCCTATGTATCATGTC 58.751 50.000 2.29 0.00 0.00 3.06
3001 3743 2.611473 GCTCAGCGCCTATGTATCATGT 60.611 50.000 2.29 0.00 0.00 3.21
3002 3744 1.998315 GCTCAGCGCCTATGTATCATG 59.002 52.381 2.29 0.00 0.00 3.07
3003 3745 1.620323 TGCTCAGCGCCTATGTATCAT 59.380 47.619 2.29 0.00 38.05 2.45
3004 3746 1.039856 TGCTCAGCGCCTATGTATCA 58.960 50.000 2.29 0.00 38.05 2.15
3030 3772 2.165641 CGTGGTTGTGCTAGGAGTGATA 59.834 50.000 0.00 0.00 0.00 2.15
3053 3795 2.533266 TATGCGGCTTCATCTCTTCC 57.467 50.000 0.00 0.00 0.00 3.46
3119 3862 1.804151 GCAAAAGGCACATGTAGACGA 59.196 47.619 0.00 0.00 43.97 4.20
3178 3921 2.514458 ACTTTTCTGGGGGTATGCAG 57.486 50.000 0.00 0.00 0.00 4.41
3290 4033 4.944962 TGCAACATATGTACAGTTCTGC 57.055 40.909 16.08 16.08 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.