Multiple sequence alignment - TraesCS1B01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G286300 chr1B 100.000 3575 0 0 1 3575 498062450 498066024 0.000000e+00 6602.0
1 TraesCS1B01G286300 chr1A 93.289 3129 157 26 162 3264 472549528 472552629 0.000000e+00 4566.0
2 TraesCS1B01G286300 chr1A 89.595 173 17 1 3403 3574 472552637 472552809 6.010000e-53 219.0
3 TraesCS1B01G286300 chr1A 86.441 59 4 3 139 197 286756096 286756150 1.070000e-05 62.1
4 TraesCS1B01G286300 chr1D 94.713 2875 110 12 162 3031 373115270 373118107 0.000000e+00 4429.0
5 TraesCS1B01G286300 chr1D 93.023 172 12 0 1 172 400123533 400123704 5.920000e-63 252.0
6 TraesCS1B01G286300 chr1D 91.954 174 13 1 1 173 3104444 3104617 3.570000e-60 243.0
7 TraesCS1B01G286300 chr1D 75.248 303 37 24 385 666 485245059 485244774 3.770000e-20 110.0
8 TraesCS1B01G286300 chr1D 84.615 91 13 1 390 479 401156677 401156767 4.920000e-14 89.8
9 TraesCS1B01G286300 chr1D 93.023 43 2 1 1084 1125 405400399 405400357 1.070000e-05 62.1
10 TraesCS1B01G286300 chr3A 83.101 1509 218 26 1067 2561 621515626 621517111 0.000000e+00 1339.0
11 TraesCS1B01G286300 chr3B 83.023 1502 223 23 1067 2561 637336711 637335235 0.000000e+00 1332.0
12 TraesCS1B01G286300 chr3B 87.805 82 10 0 390 471 166565871 166565952 2.940000e-16 97.1
13 TraesCS1B01G286300 chr3D 82.003 1528 229 33 1067 2571 478062102 478060598 0.000000e+00 1256.0
14 TraesCS1B01G286300 chr3D 94.578 166 9 0 1 166 290807414 290807249 1.270000e-64 257.0
15 TraesCS1B01G286300 chr3D 94.578 166 9 0 1 166 308225664 308225829 1.270000e-64 257.0
16 TraesCS1B01G286300 chr3D 93.605 172 11 0 1 172 344354887 344354716 1.270000e-64 257.0
17 TraesCS1B01G286300 chr3D 83.333 222 32 5 390 608 114207656 114207437 2.180000e-47 200.0
18 TraesCS1B01G286300 chr3D 100.000 32 0 0 3141 3172 526992410 526992441 3.850000e-05 60.2
19 TraesCS1B01G286300 chr6D 93.785 177 9 1 1 177 266559622 266559448 7.610000e-67 265.0
20 TraesCS1B01G286300 chr6D 91.111 180 14 2 1 180 99754526 99754703 3.570000e-60 243.0
21 TraesCS1B01G286300 chr6D 80.882 136 9 7 391 524 373368493 373368373 1.370000e-14 91.6
22 TraesCS1B01G286300 chr2D 95.181 166 8 0 1 166 317754344 317754179 2.740000e-66 263.0
23 TraesCS1B01G286300 chr2D 78.814 354 49 19 391 735 573900235 573899899 7.770000e-52 215.0
24 TraesCS1B01G286300 chr2D 78.626 262 48 6 3315 3574 150619575 150619830 2.210000e-37 167.0
25 TraesCS1B01G286300 chr7D 78.947 399 64 14 386 774 605167514 605167126 1.650000e-63 254.0
26 TraesCS1B01G286300 chr7D 79.104 134 16 10 684 807 184981016 184981147 8.230000e-12 82.4
27 TraesCS1B01G286300 chr5A 79.726 365 56 9 392 754 19490548 19490200 7.660000e-62 248.0
28 TraesCS1B01G286300 chr4D 91.954 174 12 2 1 173 161671673 161671845 3.570000e-60 243.0
29 TraesCS1B01G286300 chr4D 97.222 36 1 0 3138 3173 5531276 5531241 1.070000e-05 62.1
30 TraesCS1B01G286300 chr4A 80.117 342 49 12 386 717 137182054 137181722 1.660000e-58 237.0
31 TraesCS1B01G286300 chr2B 79.495 317 46 14 384 693 107889518 107889214 1.300000e-49 207.0
32 TraesCS1B01G286300 chr2B 74.893 466 98 14 385 833 689754851 689754388 1.010000e-45 195.0
33 TraesCS1B01G286300 chr2B 90.323 62 6 0 675 736 378434818 378434757 8.230000e-12 82.4
34 TraesCS1B01G286300 chr5B 79.116 249 47 5 3315 3559 326609580 326609827 2.210000e-37 167.0
35 TraesCS1B01G286300 chr5D 79.447 253 35 8 392 643 28727273 28727037 2.860000e-36 163.0
36 TraesCS1B01G286300 chr2A 80.769 182 19 11 668 837 45094755 45094932 1.040000e-25 128.0
37 TraesCS1B01G286300 chr2A 87.368 95 11 1 386 479 651506435 651506341 1.360000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G286300 chr1B 498062450 498066024 3574 False 6602.0 6602 100.000 1 3575 1 chr1B.!!$F1 3574
1 TraesCS1B01G286300 chr1A 472549528 472552809 3281 False 2392.5 4566 91.442 162 3574 2 chr1A.!!$F2 3412
2 TraesCS1B01G286300 chr1D 373115270 373118107 2837 False 4429.0 4429 94.713 162 3031 1 chr1D.!!$F2 2869
3 TraesCS1B01G286300 chr3A 621515626 621517111 1485 False 1339.0 1339 83.101 1067 2561 1 chr3A.!!$F1 1494
4 TraesCS1B01G286300 chr3B 637335235 637336711 1476 True 1332.0 1332 83.023 1067 2561 1 chr3B.!!$R1 1494
5 TraesCS1B01G286300 chr3D 478060598 478062102 1504 True 1256.0 1256 82.003 1067 2571 1 chr3D.!!$R4 1504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.033504 ACACCACGGTAGTTCTGCTG 59.966 55.0 0.0 0.0 0.0 4.41 F
477 497 0.034896 GACCAGACCTCGCCAGAAAA 59.965 55.0 0.0 0.0 0.0 2.29 F
478 498 0.035458 ACCAGACCTCGCCAGAAAAG 59.965 55.0 0.0 0.0 0.0 2.27 F
481 501 0.036858 AGACCTCGCCAGAAAAGCTC 60.037 55.0 0.0 0.0 0.0 4.09 F
2004 2048 0.459489 CCTTCTTCCTGCTCCTCTCG 59.541 60.0 0.0 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 1955 1.174078 TGTCGCGGAGGTACTTGTCA 61.174 55.000 6.13 0.0 41.55 3.58 R
2163 2207 2.338984 GAGTCGAACTGCACCGGT 59.661 61.111 0.00 0.0 0.00 5.28 R
2328 2372 4.134623 GGCACGAACTGGTTGTCA 57.865 55.556 0.00 0.0 0.00 3.58 R
2520 2564 4.115199 GGCACTCCCCCTGCGAAT 62.115 66.667 0.00 0.0 35.31 3.34 R
3287 3343 0.105039 ATGCGGAAGGAGACGAATCC 59.895 55.000 0.00 0.0 39.89 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.636259 CATTCCGAAAACTTTTATTTCTGCA 57.364 32.000 0.00 0.00 35.19 4.41
25 26 7.501515 CATTCCGAAAACTTTTATTTCTGCAC 58.498 34.615 0.00 0.00 35.19 4.57
26 27 6.137794 TCCGAAAACTTTTATTTCTGCACA 57.862 33.333 0.00 0.00 35.19 4.57
27 28 6.565234 TCCGAAAACTTTTATTTCTGCACAA 58.435 32.000 0.00 0.00 35.19 3.33
28 29 7.036220 TCCGAAAACTTTTATTTCTGCACAAA 58.964 30.769 0.00 0.00 35.19 2.83
29 30 7.545965 TCCGAAAACTTTTATTTCTGCACAAAA 59.454 29.630 0.00 0.00 35.19 2.44
30 31 8.171840 CCGAAAACTTTTATTTCTGCACAAAAA 58.828 29.630 0.00 0.00 35.19 1.94
46 47 2.314323 AAAAACGACACCACGGTAGT 57.686 45.000 0.00 0.00 37.61 2.73
47 48 2.314323 AAAACGACACCACGGTAGTT 57.686 45.000 0.00 0.00 38.07 2.24
48 49 1.856802 AAACGACACCACGGTAGTTC 58.143 50.000 0.00 0.00 35.90 3.01
49 50 1.035139 AACGACACCACGGTAGTTCT 58.965 50.000 0.00 0.00 32.21 3.01
50 51 0.313043 ACGACACCACGGTAGTTCTG 59.687 55.000 0.00 0.00 37.61 3.02
51 52 1.007336 CGACACCACGGTAGTTCTGC 61.007 60.000 0.00 0.00 0.00 4.26
52 53 0.317479 GACACCACGGTAGTTCTGCT 59.683 55.000 0.00 0.00 0.00 4.24
53 54 0.033504 ACACCACGGTAGTTCTGCTG 59.966 55.000 0.00 0.00 0.00 4.41
54 55 0.317160 CACCACGGTAGTTCTGCTGA 59.683 55.000 3.92 0.00 0.00 4.26
55 56 1.045407 ACCACGGTAGTTCTGCTGAA 58.955 50.000 1.33 1.33 0.00 3.02
56 57 1.414919 ACCACGGTAGTTCTGCTGAAA 59.585 47.619 7.68 0.00 33.52 2.69
57 58 2.158871 ACCACGGTAGTTCTGCTGAAAA 60.159 45.455 7.68 0.00 33.52 2.29
58 59 2.223377 CCACGGTAGTTCTGCTGAAAAC 59.777 50.000 7.68 9.13 33.52 2.43
59 60 2.869801 CACGGTAGTTCTGCTGAAAACA 59.130 45.455 7.68 0.00 33.52 2.83
60 61 3.498397 CACGGTAGTTCTGCTGAAAACAT 59.502 43.478 7.68 0.24 33.52 2.71
61 62 3.746492 ACGGTAGTTCTGCTGAAAACATC 59.254 43.478 7.68 0.00 33.52 3.06
62 63 3.745975 CGGTAGTTCTGCTGAAAACATCA 59.254 43.478 7.68 0.00 33.52 3.07
63 64 4.393062 CGGTAGTTCTGCTGAAAACATCAT 59.607 41.667 7.68 0.00 37.44 2.45
64 65 5.446473 CGGTAGTTCTGCTGAAAACATCATC 60.446 44.000 7.68 0.00 37.44 2.92
65 66 5.412594 GGTAGTTCTGCTGAAAACATCATCA 59.587 40.000 7.68 0.00 37.44 3.07
69 70 4.352600 CTGCTGAAAACATCATCAGTCC 57.647 45.455 4.87 0.00 43.91 3.85
70 71 2.743664 TGCTGAAAACATCATCAGTCCG 59.256 45.455 4.87 0.00 43.91 4.79
71 72 2.096496 GCTGAAAACATCATCAGTCCGG 59.904 50.000 0.00 0.00 43.91 5.14
72 73 2.679837 CTGAAAACATCATCAGTCCGGG 59.320 50.000 0.00 0.00 38.57 5.73
73 74 2.039746 TGAAAACATCATCAGTCCGGGT 59.960 45.455 0.00 0.00 31.50 5.28
74 75 2.879103 AAACATCATCAGTCCGGGTT 57.121 45.000 0.00 0.00 0.00 4.11
75 76 3.992943 AAACATCATCAGTCCGGGTTA 57.007 42.857 0.00 0.00 0.00 2.85
76 77 3.543680 AACATCATCAGTCCGGGTTAG 57.456 47.619 0.00 0.00 0.00 2.34
77 78 2.467880 ACATCATCAGTCCGGGTTAGT 58.532 47.619 0.00 0.00 0.00 2.24
78 79 2.838202 ACATCATCAGTCCGGGTTAGTT 59.162 45.455 0.00 0.00 0.00 2.24
79 80 3.118738 ACATCATCAGTCCGGGTTAGTTC 60.119 47.826 0.00 0.00 0.00 3.01
80 81 2.816411 TCATCAGTCCGGGTTAGTTCT 58.184 47.619 0.00 0.00 0.00 3.01
81 82 3.972133 TCATCAGTCCGGGTTAGTTCTA 58.028 45.455 0.00 0.00 0.00 2.10
82 83 4.346730 TCATCAGTCCGGGTTAGTTCTAA 58.653 43.478 0.00 0.00 0.00 2.10
83 84 4.960469 TCATCAGTCCGGGTTAGTTCTAAT 59.040 41.667 0.00 0.00 0.00 1.73
84 85 4.996788 TCAGTCCGGGTTAGTTCTAATC 57.003 45.455 0.00 0.00 0.00 1.75
85 86 4.346730 TCAGTCCGGGTTAGTTCTAATCA 58.653 43.478 0.00 0.00 0.00 2.57
86 87 4.773674 TCAGTCCGGGTTAGTTCTAATCAA 59.226 41.667 0.00 0.00 0.00 2.57
87 88 5.246656 TCAGTCCGGGTTAGTTCTAATCAAA 59.753 40.000 0.00 0.00 0.00 2.69
88 89 6.070424 TCAGTCCGGGTTAGTTCTAATCAAAT 60.070 38.462 0.00 0.00 0.00 2.32
89 90 6.258068 CAGTCCGGGTTAGTTCTAATCAAATC 59.742 42.308 0.00 0.00 0.00 2.17
90 91 6.070424 AGTCCGGGTTAGTTCTAATCAAATCA 60.070 38.462 0.00 0.00 0.00 2.57
91 92 6.766467 GTCCGGGTTAGTTCTAATCAAATCAT 59.234 38.462 0.00 0.00 0.00 2.45
92 93 7.929785 GTCCGGGTTAGTTCTAATCAAATCATA 59.070 37.037 0.00 0.00 0.00 2.15
93 94 7.929785 TCCGGGTTAGTTCTAATCAAATCATAC 59.070 37.037 0.00 0.00 0.00 2.39
94 95 7.172703 CCGGGTTAGTTCTAATCAAATCATACC 59.827 40.741 0.00 0.00 0.00 2.73
95 96 7.713507 CGGGTTAGTTCTAATCAAATCATACCA 59.286 37.037 5.40 0.00 0.00 3.25
96 97 9.403583 GGGTTAGTTCTAATCAAATCATACCAA 57.596 33.333 5.40 0.00 0.00 3.67
169 170 2.863401 CGTTGGAGACGTATCATCCA 57.137 50.000 12.92 9.60 46.49 3.41
170 171 3.371102 CGTTGGAGACGTATCATCCAT 57.629 47.619 12.92 0.00 46.49 3.41
171 172 3.309388 CGTTGGAGACGTATCATCCATC 58.691 50.000 12.92 10.17 46.49 3.51
172 173 3.243401 CGTTGGAGACGTATCATCCATCA 60.243 47.826 12.92 0.00 46.49 3.07
173 174 4.693283 GTTGGAGACGTATCATCCATCAA 58.307 43.478 12.92 3.00 42.53 2.57
364 370 8.672815 TCAATTTTGACATTTTCCTTCCAAAAC 58.327 29.630 0.00 0.00 36.66 2.43
421 427 4.154737 TCTCATGTGCCTGAAATTTCTTCG 59.845 41.667 18.64 7.41 0.00 3.79
469 489 0.612174 TCCCTCTTGACCAGACCTCG 60.612 60.000 0.00 0.00 0.00 4.63
470 490 1.216710 CCTCTTGACCAGACCTCGC 59.783 63.158 0.00 0.00 0.00 5.03
471 491 1.216710 CTCTTGACCAGACCTCGCC 59.783 63.158 0.00 0.00 0.00 5.54
472 492 1.533033 TCTTGACCAGACCTCGCCA 60.533 57.895 0.00 0.00 0.00 5.69
473 493 1.079543 CTTGACCAGACCTCGCCAG 60.080 63.158 0.00 0.00 0.00 4.85
474 494 1.533033 TTGACCAGACCTCGCCAGA 60.533 57.895 0.00 0.00 0.00 3.86
475 495 1.118965 TTGACCAGACCTCGCCAGAA 61.119 55.000 0.00 0.00 0.00 3.02
476 496 1.118965 TGACCAGACCTCGCCAGAAA 61.119 55.000 0.00 0.00 0.00 2.52
477 497 0.034896 GACCAGACCTCGCCAGAAAA 59.965 55.000 0.00 0.00 0.00 2.29
478 498 0.035458 ACCAGACCTCGCCAGAAAAG 59.965 55.000 0.00 0.00 0.00 2.27
479 499 1.301677 CCAGACCTCGCCAGAAAAGC 61.302 60.000 0.00 0.00 0.00 3.51
480 500 0.321122 CAGACCTCGCCAGAAAAGCT 60.321 55.000 0.00 0.00 0.00 3.74
481 501 0.036858 AGACCTCGCCAGAAAAGCTC 60.037 55.000 0.00 0.00 0.00 4.09
517 537 2.182312 AGCCCCACCATCTATCTTAGGA 59.818 50.000 0.00 0.00 0.00 2.94
554 574 5.426833 CCCATTATCTATCTTAGGGGTGAGG 59.573 48.000 0.00 0.00 0.00 3.86
590 610 1.618343 GAAGGTTTTCATGGGTGGTGG 59.382 52.381 0.00 0.00 33.38 4.61
601 621 1.571773 GGGTGGTGGTGGGCTTAGAT 61.572 60.000 0.00 0.00 0.00 1.98
616 636 2.650226 TAGATGGATGGTCGGGGCGA 62.650 60.000 0.00 0.00 0.00 5.54
627 647 2.359478 GGGGCGACGACCAACAAT 60.359 61.111 23.92 0.00 27.52 2.71
710 730 3.075005 GCTAGTGGTGGAGGCCGA 61.075 66.667 0.00 0.00 0.00 5.54
844 866 4.778579 AGTGACTGATGGATGGATGAAAG 58.221 43.478 0.00 0.00 0.00 2.62
864 886 1.126113 GCATTTCAGGTACGTGACGTG 59.874 52.381 22.16 17.90 43.87 4.49
886 908 6.568462 CGTGTAGTCGGTCGGGTATATAAAAT 60.568 42.308 0.00 0.00 0.00 1.82
892 914 3.068560 GTCGGGTATATAAAATGCCGCA 58.931 45.455 0.00 0.00 0.00 5.69
1540 1569 2.288778 CCTCTGCTCCACTCTGCCA 61.289 63.158 0.00 0.00 0.00 4.92
1623 1667 7.695540 CGCTTTCGACTGCATATGCAAGATT 62.696 44.000 29.18 14.85 44.24 2.40
1641 1685 3.899545 TTCCTTCGGCCTCGACCCT 62.900 63.158 0.00 0.00 45.92 4.34
1665 1709 2.493973 CTCGAGCTGTCTCTGCCC 59.506 66.667 0.00 0.00 37.19 5.36
1822 1866 3.270000 TCGTCGACGATCTTGCCA 58.730 55.556 34.97 12.17 44.22 4.92
1911 1955 0.839277 TCATGGGCTCCATCAACGAT 59.161 50.000 3.93 0.00 43.15 3.73
1935 1979 1.138247 GTACCTCCGCGACATCGTT 59.862 57.895 8.23 0.00 42.22 3.85
2004 2048 0.459489 CCTTCTTCCTGCTCCTCTCG 59.541 60.000 0.00 0.00 0.00 4.04
2163 2207 4.657408 TGCATGCGGCTGTTCCCA 62.657 61.111 14.09 0.00 45.15 4.37
2662 2712 3.706802 TCGTTTCATCTTTGCTTTGCA 57.293 38.095 0.00 0.00 36.47 4.08
2696 2746 4.520846 GATCGGGCGCACGCAAAG 62.521 66.667 30.63 0.00 44.11 2.77
2715 2765 5.472137 GCAAAGTTGTTGTAATCCACTCCTA 59.528 40.000 0.00 0.00 0.00 2.94
2771 2821 1.134670 GCGCTGGAAGGAATGAGTACT 60.135 52.381 0.00 0.00 0.00 2.73
2806 2856 5.452077 CGGATTAGGCTAAAGCTAAGTGACT 60.452 44.000 11.59 0.00 41.70 3.41
2855 2905 1.137404 CAGCCGCCGGAAATCTTTG 59.863 57.895 7.68 0.00 0.00 2.77
2856 2906 2.202610 GCCGCCGGAAATCTTTGC 60.203 61.111 7.68 0.00 0.00 3.68
2857 2907 2.988688 GCCGCCGGAAATCTTTGCA 61.989 57.895 7.68 0.00 0.00 4.08
2858 2908 1.154035 CCGCCGGAAATCTTTGCAC 60.154 57.895 5.05 0.00 0.00 4.57
2863 2913 1.336795 CCGGAAATCTTTGCACCCAAC 60.337 52.381 0.00 0.00 0.00 3.77
2922 2974 7.450634 CCATTATTGATGACAGATTTCCCATCT 59.549 37.037 0.00 0.00 38.03 2.90
2927 2979 5.826208 TGATGACAGATTTCCCATCTGATTG 59.174 40.000 16.90 0.00 46.25 2.67
2959 3011 4.631813 AGAATAGATGTTCTTCAACGTGGC 59.368 41.667 0.00 0.00 34.92 5.01
2960 3012 2.254546 AGATGTTCTTCAACGTGGCA 57.745 45.000 0.00 0.00 34.95 4.92
3007 3059 3.118408 TCAATTATTGAGAGGTGGTCGGG 60.118 47.826 3.20 0.00 34.08 5.14
3014 3070 1.224592 GAGGTGGTCGGGCATTGAT 59.775 57.895 0.00 0.00 0.00 2.57
3052 3108 7.792374 ACTATTGTTGTTCGATTATGCAGAT 57.208 32.000 0.00 0.00 0.00 2.90
3084 3140 1.003118 TGCGTTGCCAGAGGATAAACT 59.997 47.619 0.00 0.00 0.00 2.66
3086 3142 3.267483 GCGTTGCCAGAGGATAAACTAA 58.733 45.455 0.00 0.00 0.00 2.24
3096 3152 6.758886 CCAGAGGATAAACTAAGTGTGTGATC 59.241 42.308 0.00 0.00 0.00 2.92
3110 3166 6.269315 AGTGTGTGATCGAGATGATAAACTC 58.731 40.000 0.00 0.00 37.47 3.01
3113 3169 6.975197 TGTGTGATCGAGATGATAAACTCTTC 59.025 38.462 0.00 0.00 37.47 2.87
3120 3176 7.937649 TCGAGATGATAAACTCTTCGGATTTA 58.062 34.615 0.00 0.00 34.14 1.40
3131 3187 9.892130 AAACTCTTCGGATTTACTAATTCTCAT 57.108 29.630 0.00 0.00 0.00 2.90
3132 3188 9.535878 AACTCTTCGGATTTACTAATTCTCATC 57.464 33.333 0.00 0.00 0.00 2.92
3133 3189 8.919145 ACTCTTCGGATTTACTAATTCTCATCT 58.081 33.333 0.00 0.00 0.00 2.90
3166 3222 9.862371 TCTAGATGAGAATTAACAAAGTCTCAC 57.138 33.333 17.40 12.41 46.80 3.51
3177 3233 9.930693 ATTAACAAAGTCTCACCTAACTCTTAG 57.069 33.333 0.00 0.00 0.00 2.18
3179 3235 6.983984 ACAAAGTCTCACCTAACTCTTAGAC 58.016 40.000 0.00 0.00 35.20 2.59
3181 3237 6.827586 AAGTCTCACCTAACTCTTAGACTG 57.172 41.667 0.00 0.00 42.03 3.51
3184 3240 6.778559 AGTCTCACCTAACTCTTAGACTGTTT 59.221 38.462 0.00 0.00 41.48 2.83
3185 3241 7.040271 AGTCTCACCTAACTCTTAGACTGTTTC 60.040 40.741 0.00 0.00 41.48 2.78
3239 3295 6.428159 ACATGCCTCGGTAATTCAATCTATTC 59.572 38.462 0.00 0.00 0.00 1.75
3260 3316 4.530875 TCTAGGGTTAGGGTAAACTCTCG 58.469 47.826 0.00 0.00 39.45 4.04
3264 3320 3.026694 GGTTAGGGTAAACTCTCGCCTA 58.973 50.000 0.00 0.00 0.00 3.93
3266 3322 2.226962 AGGGTAAACTCTCGCCTACA 57.773 50.000 0.00 0.00 0.00 2.74
3267 3323 2.532843 AGGGTAAACTCTCGCCTACAA 58.467 47.619 0.00 0.00 0.00 2.41
3269 3325 2.233186 GGGTAAACTCTCGCCTACAAGT 59.767 50.000 0.00 0.00 0.00 3.16
3270 3326 3.306571 GGGTAAACTCTCGCCTACAAGTT 60.307 47.826 0.00 0.00 33.53 2.66
3272 3328 4.388165 GGTAAACTCTCGCCTACAAGTTTC 59.612 45.833 2.88 0.00 41.06 2.78
3273 3329 3.746045 AACTCTCGCCTACAAGTTTCA 57.254 42.857 0.00 0.00 0.00 2.69
3274 3330 3.027974 ACTCTCGCCTACAAGTTTCAC 57.972 47.619 0.00 0.00 0.00 3.18
3276 3332 1.610038 TCTCGCCTACAAGTTTCACGA 59.390 47.619 0.00 0.00 0.00 4.35
3277 3333 1.986378 CTCGCCTACAAGTTTCACGAG 59.014 52.381 0.00 0.00 39.44 4.18
3278 3334 0.438830 CGCCTACAAGTTTCACGAGC 59.561 55.000 0.00 0.00 0.00 5.03
3279 3335 0.438830 GCCTACAAGTTTCACGAGCG 59.561 55.000 0.00 0.00 0.00 5.03
3280 3336 1.933500 GCCTACAAGTTTCACGAGCGA 60.934 52.381 0.00 0.00 0.00 4.93
3281 3337 2.400399 CCTACAAGTTTCACGAGCGAA 58.600 47.619 0.00 0.00 0.00 4.70
3282 3338 2.155155 CCTACAAGTTTCACGAGCGAAC 59.845 50.000 0.00 0.00 0.00 3.95
3283 3339 0.935196 ACAAGTTTCACGAGCGAACC 59.065 50.000 0.00 0.00 0.00 3.62
3284 3340 0.234884 CAAGTTTCACGAGCGAACCC 59.765 55.000 0.00 0.00 0.00 4.11
3285 3341 1.219522 AAGTTTCACGAGCGAACCCG 61.220 55.000 0.00 0.00 39.16 5.28
3286 3342 1.952635 GTTTCACGAGCGAACCCGT 60.953 57.895 0.00 0.00 39.88 5.28
3290 3346 3.379445 ACGAGCGAACCCGTGGAT 61.379 61.111 0.00 0.00 37.64 3.41
3291 3347 2.125673 CGAGCGAACCCGTGGATT 60.126 61.111 0.00 0.00 38.24 3.01
3292 3348 2.165301 CGAGCGAACCCGTGGATTC 61.165 63.158 0.00 0.00 38.24 2.52
3295 3351 3.776656 CGAACCCGTGGATTCGTC 58.223 61.111 7.25 0.00 42.11 4.20
3296 3352 1.214589 CGAACCCGTGGATTCGTCT 59.785 57.895 7.25 0.00 42.11 4.18
3297 3353 0.801067 CGAACCCGTGGATTCGTCTC 60.801 60.000 7.25 0.00 42.11 3.36
3298 3354 0.459759 GAACCCGTGGATTCGTCTCC 60.460 60.000 0.00 0.00 35.74 3.71
3299 3355 0.903454 AACCCGTGGATTCGTCTCCT 60.903 55.000 7.39 0.00 36.20 3.69
3300 3356 0.903454 ACCCGTGGATTCGTCTCCTT 60.903 55.000 7.39 0.00 36.20 3.36
3301 3357 0.179108 CCCGTGGATTCGTCTCCTTC 60.179 60.000 7.39 1.58 36.20 3.46
3302 3358 0.179108 CCGTGGATTCGTCTCCTTCC 60.179 60.000 7.39 0.00 36.20 3.46
3303 3359 0.525668 CGTGGATTCGTCTCCTTCCG 60.526 60.000 7.39 4.22 36.20 4.30
3304 3360 0.806492 GTGGATTCGTCTCCTTCCGC 60.806 60.000 7.39 0.00 36.20 5.54
3305 3361 1.254975 TGGATTCGTCTCCTTCCGCA 61.255 55.000 7.39 0.00 36.20 5.69
3306 3362 0.105039 GGATTCGTCTCCTTCCGCAT 59.895 55.000 0.00 0.00 32.18 4.73
3307 3363 1.212616 GATTCGTCTCCTTCCGCATG 58.787 55.000 0.00 0.00 0.00 4.06
3308 3364 0.537188 ATTCGTCTCCTTCCGCATGT 59.463 50.000 0.00 0.00 0.00 3.21
3309 3365 0.108804 TTCGTCTCCTTCCGCATGTC 60.109 55.000 0.00 0.00 0.00 3.06
3310 3366 1.874019 CGTCTCCTTCCGCATGTCG 60.874 63.158 0.00 0.00 38.08 4.35
3311 3367 2.167861 GTCTCCTTCCGCATGTCGC 61.168 63.158 0.00 0.00 36.73 5.19
3312 3368 2.185350 CTCCTTCCGCATGTCGCT 59.815 61.111 0.00 0.00 39.08 4.93
3313 3369 1.880340 CTCCTTCCGCATGTCGCTC 60.880 63.158 0.00 0.00 39.08 5.03
3314 3370 2.892425 CCTTCCGCATGTCGCTCC 60.892 66.667 0.00 0.00 39.08 4.70
3315 3371 2.185350 CTTCCGCATGTCGCTCCT 59.815 61.111 0.00 0.00 39.08 3.69
3316 3372 1.880340 CTTCCGCATGTCGCTCCTC 60.880 63.158 0.00 0.00 39.08 3.71
3317 3373 2.290122 CTTCCGCATGTCGCTCCTCT 62.290 60.000 0.00 0.00 39.08 3.69
3318 3374 2.563050 TTCCGCATGTCGCTCCTCTG 62.563 60.000 0.00 0.00 39.08 3.35
3319 3375 2.584418 CGCATGTCGCTCCTCTGG 60.584 66.667 0.00 0.00 39.08 3.86
3320 3376 2.581354 GCATGTCGCTCCTCTGGT 59.419 61.111 0.00 0.00 37.77 4.00
3321 3377 1.078848 GCATGTCGCTCCTCTGGTT 60.079 57.895 0.00 0.00 37.77 3.67
3322 3378 0.175760 GCATGTCGCTCCTCTGGTTA 59.824 55.000 0.00 0.00 37.77 2.85
3323 3379 1.804372 GCATGTCGCTCCTCTGGTTAG 60.804 57.143 0.00 0.00 37.77 2.34
3324 3380 1.478510 CATGTCGCTCCTCTGGTTAGT 59.521 52.381 0.00 0.00 0.00 2.24
3325 3381 0.888619 TGTCGCTCCTCTGGTTAGTG 59.111 55.000 0.00 0.00 0.00 2.74
3326 3382 0.173708 GTCGCTCCTCTGGTTAGTGG 59.826 60.000 0.00 0.00 38.62 4.00
3327 3383 0.251653 TCGCTCCTCTGGTTAGTGGT 60.252 55.000 0.00 0.00 38.45 4.16
3328 3384 0.608640 CGCTCCTCTGGTTAGTGGTT 59.391 55.000 0.00 0.00 38.45 3.67
3329 3385 1.002087 CGCTCCTCTGGTTAGTGGTTT 59.998 52.381 0.00 0.00 38.45 3.27
3330 3386 2.232941 CGCTCCTCTGGTTAGTGGTTTA 59.767 50.000 0.00 0.00 38.45 2.01
3331 3387 3.676324 CGCTCCTCTGGTTAGTGGTTTAG 60.676 52.174 0.00 0.00 38.45 1.85
3332 3388 3.369576 GCTCCTCTGGTTAGTGGTTTAGG 60.370 52.174 0.00 0.00 38.45 2.69
3333 3389 3.838903 CTCCTCTGGTTAGTGGTTTAGGT 59.161 47.826 0.00 0.00 38.45 3.08
3334 3390 4.237018 TCCTCTGGTTAGTGGTTTAGGTT 58.763 43.478 0.00 0.00 38.45 3.50
3335 3391 5.405279 TCCTCTGGTTAGTGGTTTAGGTTA 58.595 41.667 0.00 0.00 38.45 2.85
3336 3392 5.482878 TCCTCTGGTTAGTGGTTTAGGTTAG 59.517 44.000 0.00 0.00 38.45 2.34
3337 3393 5.482878 CCTCTGGTTAGTGGTTTAGGTTAGA 59.517 44.000 0.00 0.00 33.78 2.10
3338 3394 6.351117 CCTCTGGTTAGTGGTTTAGGTTAGAG 60.351 46.154 0.00 0.00 33.78 2.43
3339 3395 6.080009 TCTGGTTAGTGGTTTAGGTTAGAGT 58.920 40.000 0.00 0.00 0.00 3.24
3340 3396 6.014840 TCTGGTTAGTGGTTTAGGTTAGAGTG 60.015 42.308 0.00 0.00 0.00 3.51
3341 3397 5.603813 TGGTTAGTGGTTTAGGTTAGAGTGT 59.396 40.000 0.00 0.00 0.00 3.55
3342 3398 6.100134 TGGTTAGTGGTTTAGGTTAGAGTGTT 59.900 38.462 0.00 0.00 0.00 3.32
3343 3399 6.994496 GGTTAGTGGTTTAGGTTAGAGTGTTT 59.006 38.462 0.00 0.00 0.00 2.83
3344 3400 7.500227 GGTTAGTGGTTTAGGTTAGAGTGTTTT 59.500 37.037 0.00 0.00 0.00 2.43
3345 3401 9.546428 GTTAGTGGTTTAGGTTAGAGTGTTTTA 57.454 33.333 0.00 0.00 0.00 1.52
3346 3402 9.768662 TTAGTGGTTTAGGTTAGAGTGTTTTAG 57.231 33.333 0.00 0.00 0.00 1.85
3347 3403 7.799081 AGTGGTTTAGGTTAGAGTGTTTTAGT 58.201 34.615 0.00 0.00 0.00 2.24
3348 3404 8.927411 AGTGGTTTAGGTTAGAGTGTTTTAGTA 58.073 33.333 0.00 0.00 0.00 1.82
3349 3405 8.982685 GTGGTTTAGGTTAGAGTGTTTTAGTAC 58.017 37.037 0.00 0.00 0.00 2.73
3350 3406 8.927411 TGGTTTAGGTTAGAGTGTTTTAGTACT 58.073 33.333 0.00 0.00 0.00 2.73
3351 3407 9.416794 GGTTTAGGTTAGAGTGTTTTAGTACTC 57.583 37.037 0.00 0.00 42.77 2.59
3352 3408 9.122613 GTTTAGGTTAGAGTGTTTTAGTACTCG 57.877 37.037 0.00 0.00 46.05 4.18
3353 3409 6.890979 AGGTTAGAGTGTTTTAGTACTCGT 57.109 37.500 0.00 0.00 46.05 4.18
3354 3410 7.986085 AGGTTAGAGTGTTTTAGTACTCGTA 57.014 36.000 0.00 0.00 46.05 3.43
3355 3411 8.038492 AGGTTAGAGTGTTTTAGTACTCGTAG 57.962 38.462 0.00 0.00 46.05 3.51
3356 3412 7.880195 AGGTTAGAGTGTTTTAGTACTCGTAGA 59.120 37.037 0.00 0.00 46.05 2.59
3357 3413 8.672815 GGTTAGAGTGTTTTAGTACTCGTAGAT 58.327 37.037 0.00 0.00 46.05 1.98
3358 3414 9.488124 GTTAGAGTGTTTTAGTACTCGTAGATG 57.512 37.037 0.00 0.00 46.05 2.90
3359 3415 6.553524 AGAGTGTTTTAGTACTCGTAGATGC 58.446 40.000 0.00 0.00 46.05 3.91
3360 3416 5.330295 AGTGTTTTAGTACTCGTAGATGCG 58.670 41.667 0.00 0.00 33.89 4.73
3361 3417 4.498323 GTGTTTTAGTACTCGTAGATGCGG 59.502 45.833 0.00 0.00 33.89 5.69
3362 3418 3.344904 TTTAGTACTCGTAGATGCGGC 57.655 47.619 0.00 0.00 33.89 6.53
3363 3419 0.863799 TAGTACTCGTAGATGCGGCG 59.136 55.000 0.51 0.51 33.89 6.46
3364 3420 2.009755 GTACTCGTAGATGCGGCGC 61.010 63.158 27.44 27.44 33.89 6.53
3365 3421 2.184830 TACTCGTAGATGCGGCGCT 61.185 57.895 33.26 18.39 33.89 5.92
3366 3422 2.114331 TACTCGTAGATGCGGCGCTC 62.114 60.000 33.26 25.17 33.89 5.03
3367 3423 4.607606 TCGTAGATGCGGCGCTCG 62.608 66.667 33.26 25.17 42.76 5.03
3381 3437 4.838152 CTCGGGCGGATGGTGGTG 62.838 72.222 0.00 0.00 0.00 4.17
3384 3440 4.740822 GGGCGGATGGTGGTGCTT 62.741 66.667 0.00 0.00 0.00 3.91
3385 3441 2.676471 GGCGGATGGTGGTGCTTT 60.676 61.111 0.00 0.00 0.00 3.51
3386 3442 2.275380 GGCGGATGGTGGTGCTTTT 61.275 57.895 0.00 0.00 0.00 2.27
3387 3443 1.665442 GCGGATGGTGGTGCTTTTT 59.335 52.632 0.00 0.00 0.00 1.94
3388 3444 0.388520 GCGGATGGTGGTGCTTTTTC 60.389 55.000 0.00 0.00 0.00 2.29
3389 3445 1.247567 CGGATGGTGGTGCTTTTTCT 58.752 50.000 0.00 0.00 0.00 2.52
3390 3446 1.613437 CGGATGGTGGTGCTTTTTCTT 59.387 47.619 0.00 0.00 0.00 2.52
3391 3447 2.607771 CGGATGGTGGTGCTTTTTCTTG 60.608 50.000 0.00 0.00 0.00 3.02
3392 3448 2.289010 GGATGGTGGTGCTTTTTCTTGG 60.289 50.000 0.00 0.00 0.00 3.61
3393 3449 2.151502 TGGTGGTGCTTTTTCTTGGA 57.848 45.000 0.00 0.00 0.00 3.53
3394 3450 2.031120 TGGTGGTGCTTTTTCTTGGAG 58.969 47.619 0.00 0.00 0.00 3.86
3395 3451 2.031870 GGTGGTGCTTTTTCTTGGAGT 58.968 47.619 0.00 0.00 0.00 3.85
3396 3452 2.430694 GGTGGTGCTTTTTCTTGGAGTT 59.569 45.455 0.00 0.00 0.00 3.01
3397 3453 3.118775 GGTGGTGCTTTTTCTTGGAGTTT 60.119 43.478 0.00 0.00 0.00 2.66
3398 3454 3.865164 GTGGTGCTTTTTCTTGGAGTTTG 59.135 43.478 0.00 0.00 0.00 2.93
3399 3455 3.513515 TGGTGCTTTTTCTTGGAGTTTGT 59.486 39.130 0.00 0.00 0.00 2.83
3400 3456 4.112634 GGTGCTTTTTCTTGGAGTTTGTC 58.887 43.478 0.00 0.00 0.00 3.18
3401 3457 4.142160 GGTGCTTTTTCTTGGAGTTTGTCT 60.142 41.667 0.00 0.00 0.00 3.41
3402 3458 5.410924 GTGCTTTTTCTTGGAGTTTGTCTT 58.589 37.500 0.00 0.00 0.00 3.01
3403 3459 5.869344 GTGCTTTTTCTTGGAGTTTGTCTTT 59.131 36.000 0.00 0.00 0.00 2.52
3404 3460 6.035005 GTGCTTTTTCTTGGAGTTTGTCTTTC 59.965 38.462 0.00 0.00 0.00 2.62
3405 3461 5.230097 GCTTTTTCTTGGAGTTTGTCTTTCG 59.770 40.000 0.00 0.00 0.00 3.46
3406 3462 4.893424 TTTCTTGGAGTTTGTCTTTCGG 57.107 40.909 0.00 0.00 0.00 4.30
3407 3463 2.846193 TCTTGGAGTTTGTCTTTCGGG 58.154 47.619 0.00 0.00 0.00 5.14
3412 3468 3.211865 GGAGTTTGTCTTTCGGGTTTCT 58.788 45.455 0.00 0.00 0.00 2.52
3419 3475 4.094476 TGTCTTTCGGGTTTCTATCCTCT 58.906 43.478 0.00 0.00 0.00 3.69
3459 3515 0.530870 GTAGTTGATGGAGCTCCGGC 60.531 60.000 27.43 21.07 39.43 6.13
3462 3518 3.664025 TTGATGGAGCTCCGGCGTG 62.664 63.158 27.43 0.00 44.37 5.34
3471 3527 4.532490 TCCGGCGTGGATTCATTC 57.468 55.556 6.01 0.00 43.74 2.67
3485 3541 5.444176 GGATTCATTCCATCTTCCTTGAGT 58.556 41.667 0.00 0.00 44.74 3.41
3491 3547 6.385176 TCATTCCATCTTCCTTGAGTAGTGAT 59.615 38.462 0.00 0.00 0.00 3.06
3508 3564 5.707242 AGTGATGTTAGAGTTTCTCGTCA 57.293 39.130 0.00 0.00 35.36 4.35
3536 3592 2.870411 GACGTTTAGTGTCAGGTGCTTT 59.130 45.455 0.00 0.00 36.37 3.51
3541 3598 5.851177 CGTTTAGTGTCAGGTGCTTTAATTG 59.149 40.000 0.00 0.00 0.00 2.32
3559 3616 3.328382 TTGATTCGAGGGTTCAACGAT 57.672 42.857 0.00 0.00 36.02 3.73
3566 3623 2.280628 GAGGGTTCAACGATGATGACC 58.719 52.381 7.77 7.77 36.23 4.02
3574 3631 2.106938 GATGATGACCGCGGCTCA 59.893 61.111 28.58 26.61 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.168972 TGTGCAGAAATAAAAGTTTTCGGAATG 59.831 33.333 3.60 1.81 37.98 2.67
3 4 6.137794 TGTGCAGAAATAAAAGTTTTCGGA 57.862 33.333 3.60 0.00 37.98 4.55
4 5 6.820470 TTGTGCAGAAATAAAAGTTTTCGG 57.180 33.333 3.60 0.00 37.98 4.30
27 28 2.314323 ACTACCGTGGTGTCGTTTTT 57.686 45.000 0.72 0.00 0.00 1.94
28 29 2.159057 AGAACTACCGTGGTGTCGTTTT 60.159 45.455 0.72 0.00 0.00 2.43
29 30 1.410153 AGAACTACCGTGGTGTCGTTT 59.590 47.619 0.72 0.00 0.00 3.60
30 31 1.035139 AGAACTACCGTGGTGTCGTT 58.965 50.000 0.72 2.62 0.00 3.85
31 32 0.313043 CAGAACTACCGTGGTGTCGT 59.687 55.000 0.72 0.00 0.00 4.34
32 33 1.007336 GCAGAACTACCGTGGTGTCG 61.007 60.000 0.72 0.00 0.00 4.35
33 34 0.317479 AGCAGAACTACCGTGGTGTC 59.683 55.000 0.72 0.00 0.00 3.67
34 35 0.033504 CAGCAGAACTACCGTGGTGT 59.966 55.000 0.72 0.00 35.45 4.16
35 36 0.317160 TCAGCAGAACTACCGTGGTG 59.683 55.000 0.72 0.00 40.32 4.17
36 37 1.045407 TTCAGCAGAACTACCGTGGT 58.955 50.000 0.00 0.00 0.00 4.16
37 38 2.163818 TTTCAGCAGAACTACCGTGG 57.836 50.000 0.00 0.00 32.39 4.94
38 39 2.869801 TGTTTTCAGCAGAACTACCGTG 59.130 45.455 0.00 0.00 32.39 4.94
39 40 3.188159 TGTTTTCAGCAGAACTACCGT 57.812 42.857 0.00 0.00 32.39 4.83
40 41 3.745975 TGATGTTTTCAGCAGAACTACCG 59.254 43.478 0.00 0.00 41.49 4.02
50 51 2.096496 CCGGACTGATGATGTTTTCAGC 59.904 50.000 0.00 0.00 42.51 4.26
51 52 2.679837 CCCGGACTGATGATGTTTTCAG 59.320 50.000 0.73 0.00 43.97 3.02
52 53 2.039746 ACCCGGACTGATGATGTTTTCA 59.960 45.455 0.73 0.00 39.12 2.69
53 54 2.711542 ACCCGGACTGATGATGTTTTC 58.288 47.619 0.73 0.00 0.00 2.29
54 55 2.879103 ACCCGGACTGATGATGTTTT 57.121 45.000 0.73 0.00 0.00 2.43
55 56 2.879103 AACCCGGACTGATGATGTTT 57.121 45.000 0.73 0.00 0.00 2.83
56 57 2.838202 ACTAACCCGGACTGATGATGTT 59.162 45.455 0.73 0.00 0.00 2.71
57 58 2.467880 ACTAACCCGGACTGATGATGT 58.532 47.619 0.73 0.00 0.00 3.06
58 59 3.133003 AGAACTAACCCGGACTGATGATG 59.867 47.826 0.73 0.00 0.00 3.07
59 60 3.375699 AGAACTAACCCGGACTGATGAT 58.624 45.455 0.73 0.00 0.00 2.45
60 61 2.816411 AGAACTAACCCGGACTGATGA 58.184 47.619 0.73 0.00 0.00 2.92
61 62 4.730949 TTAGAACTAACCCGGACTGATG 57.269 45.455 0.73 0.00 0.00 3.07
62 63 4.960469 TGATTAGAACTAACCCGGACTGAT 59.040 41.667 0.73 0.00 0.00 2.90
63 64 4.346730 TGATTAGAACTAACCCGGACTGA 58.653 43.478 0.73 0.00 0.00 3.41
64 65 4.730949 TGATTAGAACTAACCCGGACTG 57.269 45.455 0.73 0.00 0.00 3.51
65 66 5.750352 TTTGATTAGAACTAACCCGGACT 57.250 39.130 0.73 0.00 0.00 3.85
66 67 6.110707 TGATTTGATTAGAACTAACCCGGAC 58.889 40.000 0.73 0.00 0.00 4.79
67 68 6.302535 TGATTTGATTAGAACTAACCCGGA 57.697 37.500 0.73 0.00 0.00 5.14
68 69 7.172703 GGTATGATTTGATTAGAACTAACCCGG 59.827 40.741 0.00 0.00 0.00 5.73
69 70 7.713507 TGGTATGATTTGATTAGAACTAACCCG 59.286 37.037 0.00 0.00 0.00 5.28
70 71 8.974060 TGGTATGATTTGATTAGAACTAACCC 57.026 34.615 0.00 0.00 0.00 4.11
151 152 4.322080 TGATGGATGATACGTCTCCAAC 57.678 45.455 11.58 10.04 42.12 3.77
152 153 5.551305 ATTGATGGATGATACGTCTCCAA 57.449 39.130 11.58 2.88 42.12 3.53
153 154 6.665248 AGATATTGATGGATGATACGTCTCCA 59.335 38.462 10.37 10.37 42.95 3.86
154 155 7.106439 AGATATTGATGGATGATACGTCTCC 57.894 40.000 0.00 0.00 0.00 3.71
155 156 9.676195 CATAGATATTGATGGATGATACGTCTC 57.324 37.037 0.00 0.00 0.00 3.36
156 157 9.413734 TCATAGATATTGATGGATGATACGTCT 57.586 33.333 0.00 0.00 0.00 4.18
469 489 1.355066 CTCCGACGAGCTTTTCTGGC 61.355 60.000 0.00 0.00 0.00 4.85
470 490 0.243907 TCTCCGACGAGCTTTTCTGG 59.756 55.000 0.00 0.00 35.94 3.86
471 491 1.989165 CTTCTCCGACGAGCTTTTCTG 59.011 52.381 0.00 0.00 35.94 3.02
472 492 1.887198 TCTTCTCCGACGAGCTTTTCT 59.113 47.619 0.00 0.00 35.94 2.52
473 493 2.349297 TCTTCTCCGACGAGCTTTTC 57.651 50.000 0.00 0.00 35.94 2.29
474 494 2.036089 AGTTCTTCTCCGACGAGCTTTT 59.964 45.455 0.00 0.00 35.94 2.27
475 495 1.614413 AGTTCTTCTCCGACGAGCTTT 59.386 47.619 0.00 0.00 35.94 3.51
476 496 1.249407 AGTTCTTCTCCGACGAGCTT 58.751 50.000 0.00 0.00 35.94 3.74
477 497 2.011222 CTAGTTCTTCTCCGACGAGCT 58.989 52.381 0.00 0.00 35.94 4.09
478 498 1.532298 GCTAGTTCTTCTCCGACGAGC 60.532 57.143 0.00 0.00 35.94 5.03
479 499 1.064357 GGCTAGTTCTTCTCCGACGAG 59.936 57.143 0.00 0.00 37.48 4.18
480 500 1.093159 GGCTAGTTCTTCTCCGACGA 58.907 55.000 0.00 0.00 0.00 4.20
481 501 0.100861 GGGCTAGTTCTTCTCCGACG 59.899 60.000 0.00 0.00 0.00 5.12
517 537 8.618385 AGATAGATAATGGGGCAATTACTTCAT 58.382 33.333 0.00 0.00 0.00 2.57
552 572 2.122954 GGCGATCCCCTATCCCCT 59.877 66.667 0.00 0.00 30.82 4.79
554 574 1.889530 CTTCGGCGATCCCCTATCCC 61.890 65.000 11.76 0.00 0.00 3.85
590 610 1.541233 CGACCATCCATCTAAGCCCAC 60.541 57.143 0.00 0.00 0.00 4.61
686 706 4.814294 CCACCACTAGCGGTCGGC 62.814 72.222 0.00 0.00 37.07 5.54
690 710 3.391382 GCCTCCACCACTAGCGGT 61.391 66.667 0.00 0.00 41.07 5.68
695 715 3.066190 CGTCGGCCTCCACCACTA 61.066 66.667 0.00 0.00 0.00 2.74
710 730 2.761213 CTACCCCGCCCTAACCGT 60.761 66.667 0.00 0.00 0.00 4.83
744 764 2.749621 CAACCTCCATTCCTTCTTTCCG 59.250 50.000 0.00 0.00 0.00 4.30
844 866 1.126113 CACGTCACGTACCTGAAATGC 59.874 52.381 0.41 0.00 38.32 3.56
864 886 5.574443 GCATTTTATATACCCGACCGACTAC 59.426 44.000 0.00 0.00 0.00 2.73
1188 1217 3.352338 GAACTCGCCCGTCCACGAT 62.352 63.158 0.00 0.00 43.02 3.73
1338 1367 2.437895 GCGCCCTTGGGGTAGTTC 60.438 66.667 7.91 0.00 46.51 3.01
1392 1421 1.273688 CGTCGACGTTGAATATGCCA 58.726 50.000 29.08 0.00 34.11 4.92
1540 1569 3.958860 GCCACCCTGTCCAGCAGT 61.959 66.667 0.00 0.00 43.55 4.40
1559 1588 2.185608 GGTCGAGCAGCTTCTCCC 59.814 66.667 10.30 0.42 0.00 4.30
1641 1685 4.074526 GACAGCTCGAGGCAGCCA 62.075 66.667 15.80 0.00 44.79 4.75
1884 1928 3.267860 GAGCCCATGAAGCGCGAG 61.268 66.667 12.10 0.00 34.64 5.03
1911 1955 1.174078 TGTCGCGGAGGTACTTGTCA 61.174 55.000 6.13 0.00 41.55 3.58
2066 2110 3.360340 GGTGGTCGTCGACGTCCT 61.360 66.667 39.68 0.00 45.43 3.85
2067 2111 4.410743 GGGTGGTCGTCGACGTCC 62.411 72.222 36.52 36.52 45.43 4.79
2163 2207 2.338984 GAGTCGAACTGCACCGGT 59.661 61.111 0.00 0.00 0.00 5.28
2328 2372 4.134623 GGCACGAACTGGTTGTCA 57.865 55.556 0.00 0.00 0.00 3.58
2520 2564 4.115199 GGCACTCCCCCTGCGAAT 62.115 66.667 0.00 0.00 35.31 3.34
2532 2576 4.363990 CGCACTCTGACCGGCACT 62.364 66.667 0.00 0.00 0.00 4.40
2561 2605 1.731433 ATAAACCTAGCCGCTCGCGA 61.731 55.000 9.26 9.26 44.76 5.87
2616 2666 4.241555 ATCCATCCCGTGCGGCTC 62.242 66.667 4.91 0.00 0.00 4.70
2696 2746 4.863131 CGAGTAGGAGTGGATTACAACAAC 59.137 45.833 0.00 0.00 0.00 3.32
2715 2765 0.885196 GCTGGTCTTGACTCTCGAGT 59.115 55.000 13.13 0.00 45.84 4.18
2771 2821 7.476540 TTTAGCCTAATCCGCTCTTATGATA 57.523 36.000 0.00 0.00 37.79 2.15
2806 2856 1.070786 AAGTCGCAGCCGAGGAAAA 59.929 52.632 0.00 0.00 45.38 2.29
2848 2898 3.490761 CGTTGAAGTTGGGTGCAAAGATT 60.491 43.478 0.00 0.00 0.00 2.40
2855 2905 1.299089 GTGCGTTGAAGTTGGGTGC 60.299 57.895 0.00 0.00 0.00 5.01
2856 2906 0.453793 TTGTGCGTTGAAGTTGGGTG 59.546 50.000 0.00 0.00 0.00 4.61
2857 2907 0.738389 CTTGTGCGTTGAAGTTGGGT 59.262 50.000 0.00 0.00 0.00 4.51
2858 2908 0.738389 ACTTGTGCGTTGAAGTTGGG 59.262 50.000 0.00 0.00 0.00 4.12
2863 2913 1.730176 CACGAACTTGTGCGTTGAAG 58.270 50.000 3.78 0.00 38.92 3.02
2953 3005 4.189231 GTCCATAACTAGAAATGCCACGT 58.811 43.478 0.00 0.00 0.00 4.49
2959 3011 5.985530 TCGATGCTGTCCATAACTAGAAATG 59.014 40.000 0.00 0.00 33.29 2.32
2960 3012 6.161855 TCGATGCTGTCCATAACTAGAAAT 57.838 37.500 0.00 0.00 33.29 2.17
3007 3059 5.404946 AGTACACTGCAATTCAATCAATGC 58.595 37.500 0.00 0.00 0.00 3.56
3014 3070 7.270757 ACAACAATAGTACACTGCAATTCAA 57.729 32.000 0.00 0.00 0.00 2.69
3052 3108 1.266718 GGCAACGCACAATTCTCTTCA 59.733 47.619 0.00 0.00 0.00 3.02
3084 3140 7.772166 AGTTTATCATCTCGATCACACACTTA 58.228 34.615 0.00 0.00 35.39 2.24
3086 3142 6.096141 AGAGTTTATCATCTCGATCACACACT 59.904 38.462 0.00 0.00 35.39 3.55
3096 3152 7.863375 AGTAAATCCGAAGAGTTTATCATCTCG 59.137 37.037 0.00 0.00 36.03 4.04
3135 3191 9.706691 ACTTTGTTAATTCTCATCTAGACGAAA 57.293 29.630 0.00 0.00 32.51 3.46
3136 3192 9.355215 GACTTTGTTAATTCTCATCTAGACGAA 57.645 33.333 0.00 0.00 32.51 3.85
3139 3195 9.862371 TGAGACTTTGTTAATTCTCATCTAGAC 57.138 33.333 0.00 0.00 42.03 2.59
3152 3208 9.139734 TCTAAGAGTTAGGTGAGACTTTGTTAA 57.860 33.333 0.00 0.00 34.00 2.01
3210 3266 5.461032 TTGAATTACCGAGGCATGTTTTT 57.539 34.783 0.00 0.00 0.00 1.94
3211 3267 5.418840 AGATTGAATTACCGAGGCATGTTTT 59.581 36.000 0.00 0.00 0.00 2.43
3212 3268 4.949856 AGATTGAATTACCGAGGCATGTTT 59.050 37.500 0.00 0.00 0.00 2.83
3213 3269 4.526970 AGATTGAATTACCGAGGCATGTT 58.473 39.130 0.00 0.00 0.00 2.71
3239 3295 3.067883 GCGAGAGTTTACCCTAACCCTAG 59.932 52.174 0.00 0.00 0.00 3.02
3260 3316 0.438830 CGCTCGTGAAACTTGTAGGC 59.561 55.000 0.00 0.00 31.75 3.93
3264 3320 0.935196 GGTTCGCTCGTGAAACTTGT 59.065 50.000 1.22 0.00 32.72 3.16
3266 3322 1.219522 CGGGTTCGCTCGTGAAACTT 61.220 55.000 8.02 0.00 35.84 2.66
3267 3323 1.663702 CGGGTTCGCTCGTGAAACT 60.664 57.895 8.02 0.00 35.84 2.66
3276 3332 2.125673 CGAATCCACGGGTTCGCT 60.126 61.111 17.81 0.00 40.39 4.93
3279 3335 0.459759 GGAGACGAATCCACGGGTTC 60.460 60.000 0.00 0.00 39.34 3.62
3280 3336 0.903454 AGGAGACGAATCCACGGGTT 60.903 55.000 12.15 0.00 42.26 4.11
3281 3337 0.903454 AAGGAGACGAATCCACGGGT 60.903 55.000 12.15 0.00 42.26 5.28
3282 3338 0.179108 GAAGGAGACGAATCCACGGG 60.179 60.000 12.15 0.00 42.26 5.28
3283 3339 0.179108 GGAAGGAGACGAATCCACGG 60.179 60.000 12.15 0.00 42.26 4.94
3284 3340 0.525668 CGGAAGGAGACGAATCCACG 60.526 60.000 12.15 9.58 42.26 4.94
3285 3341 0.806492 GCGGAAGGAGACGAATCCAC 60.806 60.000 12.15 6.44 42.26 4.02
3286 3342 1.254975 TGCGGAAGGAGACGAATCCA 61.255 55.000 12.15 0.00 42.26 3.41
3287 3343 0.105039 ATGCGGAAGGAGACGAATCC 59.895 55.000 0.00 0.00 39.89 3.01
3288 3344 1.212616 CATGCGGAAGGAGACGAATC 58.787 55.000 0.00 0.00 32.19 2.52
3289 3345 0.537188 ACATGCGGAAGGAGACGAAT 59.463 50.000 0.00 0.00 32.19 3.34
3290 3346 0.108804 GACATGCGGAAGGAGACGAA 60.109 55.000 0.00 0.00 32.19 3.85
3291 3347 1.511305 GACATGCGGAAGGAGACGA 59.489 57.895 0.00 0.00 32.19 4.20
3292 3348 1.874019 CGACATGCGGAAGGAGACG 60.874 63.158 0.00 0.00 36.03 4.18
3293 3349 2.167861 GCGACATGCGGAAGGAGAC 61.168 63.158 10.70 0.00 41.29 3.36
3294 3350 2.184322 GCGACATGCGGAAGGAGA 59.816 61.111 10.70 0.00 41.29 3.71
3303 3359 0.175760 TAACCAGAGGAGCGACATGC 59.824 55.000 0.00 0.00 46.98 4.06
3304 3360 1.478510 ACTAACCAGAGGAGCGACATG 59.521 52.381 0.00 0.00 0.00 3.21
3305 3361 1.478510 CACTAACCAGAGGAGCGACAT 59.521 52.381 0.00 0.00 0.00 3.06
3306 3362 0.888619 CACTAACCAGAGGAGCGACA 59.111 55.000 0.00 0.00 0.00 4.35
3307 3363 0.173708 CCACTAACCAGAGGAGCGAC 59.826 60.000 0.00 0.00 34.63 5.19
3308 3364 0.251653 ACCACTAACCAGAGGAGCGA 60.252 55.000 0.00 0.00 36.14 4.93
3309 3365 0.608640 AACCACTAACCAGAGGAGCG 59.391 55.000 0.00 0.00 36.14 5.03
3310 3366 2.861147 AAACCACTAACCAGAGGAGC 57.139 50.000 0.00 0.00 36.14 4.70
3311 3367 3.838903 ACCTAAACCACTAACCAGAGGAG 59.161 47.826 0.00 0.00 36.14 3.69
3312 3368 3.865571 ACCTAAACCACTAACCAGAGGA 58.134 45.455 0.00 0.00 36.14 3.71
3313 3369 4.635699 AACCTAAACCACTAACCAGAGG 57.364 45.455 0.00 0.00 38.41 3.69
3314 3370 6.210984 ACTCTAACCTAAACCACTAACCAGAG 59.789 42.308 0.00 0.00 0.00 3.35
3315 3371 6.014840 CACTCTAACCTAAACCACTAACCAGA 60.015 42.308 0.00 0.00 0.00 3.86
3316 3372 6.164176 CACTCTAACCTAAACCACTAACCAG 58.836 44.000 0.00 0.00 0.00 4.00
3317 3373 5.603813 ACACTCTAACCTAAACCACTAACCA 59.396 40.000 0.00 0.00 0.00 3.67
3318 3374 6.106648 ACACTCTAACCTAAACCACTAACC 57.893 41.667 0.00 0.00 0.00 2.85
3319 3375 8.442632 AAAACACTCTAACCTAAACCACTAAC 57.557 34.615 0.00 0.00 0.00 2.34
3320 3376 9.768662 CTAAAACACTCTAACCTAAACCACTAA 57.231 33.333 0.00 0.00 0.00 2.24
3321 3377 8.927411 ACTAAAACACTCTAACCTAAACCACTA 58.073 33.333 0.00 0.00 0.00 2.74
3322 3378 7.799081 ACTAAAACACTCTAACCTAAACCACT 58.201 34.615 0.00 0.00 0.00 4.00
3323 3379 8.982685 GTACTAAAACACTCTAACCTAAACCAC 58.017 37.037 0.00 0.00 0.00 4.16
3324 3380 8.927411 AGTACTAAAACACTCTAACCTAAACCA 58.073 33.333 0.00 0.00 0.00 3.67
3325 3381 9.416794 GAGTACTAAAACACTCTAACCTAAACC 57.583 37.037 0.00 0.00 38.50 3.27
3326 3382 9.122613 CGAGTACTAAAACACTCTAACCTAAAC 57.877 37.037 0.00 0.00 39.23 2.01
3327 3383 8.850156 ACGAGTACTAAAACACTCTAACCTAAA 58.150 33.333 0.00 0.00 39.23 1.85
3328 3384 8.396272 ACGAGTACTAAAACACTCTAACCTAA 57.604 34.615 0.00 0.00 39.23 2.69
3329 3385 7.986085 ACGAGTACTAAAACACTCTAACCTA 57.014 36.000 0.00 0.00 39.23 3.08
3330 3386 6.890979 ACGAGTACTAAAACACTCTAACCT 57.109 37.500 0.00 0.00 39.23 3.50
3331 3387 8.034058 TCTACGAGTACTAAAACACTCTAACC 57.966 38.462 0.00 0.00 39.23 2.85
3332 3388 9.488124 CATCTACGAGTACTAAAACACTCTAAC 57.512 37.037 0.00 0.00 39.23 2.34
3333 3389 8.180267 GCATCTACGAGTACTAAAACACTCTAA 58.820 37.037 0.00 0.00 39.23 2.10
3334 3390 7.465111 CGCATCTACGAGTACTAAAACACTCTA 60.465 40.741 0.00 0.00 39.23 2.43
3335 3391 6.553524 GCATCTACGAGTACTAAAACACTCT 58.446 40.000 0.00 0.00 39.23 3.24
3336 3392 5.451662 CGCATCTACGAGTACTAAAACACTC 59.548 44.000 0.00 0.00 38.24 3.51
3337 3393 5.330295 CGCATCTACGAGTACTAAAACACT 58.670 41.667 0.00 0.00 34.06 3.55
3338 3394 4.498323 CCGCATCTACGAGTACTAAAACAC 59.502 45.833 0.00 0.00 34.06 3.32
3339 3395 4.665212 CCGCATCTACGAGTACTAAAACA 58.335 43.478 0.00 0.00 34.06 2.83
3340 3396 3.485013 GCCGCATCTACGAGTACTAAAAC 59.515 47.826 0.00 0.00 34.06 2.43
3341 3397 3.699067 GCCGCATCTACGAGTACTAAAA 58.301 45.455 0.00 0.00 34.06 1.52
3342 3398 2.286595 CGCCGCATCTACGAGTACTAAA 60.287 50.000 0.00 0.00 34.06 1.85
3343 3399 1.262417 CGCCGCATCTACGAGTACTAA 59.738 52.381 0.00 0.00 34.06 2.24
3344 3400 0.863799 CGCCGCATCTACGAGTACTA 59.136 55.000 0.00 0.00 34.06 1.82
3345 3401 1.647629 CGCCGCATCTACGAGTACT 59.352 57.895 0.00 0.00 34.06 2.73
3346 3402 2.009755 GCGCCGCATCTACGAGTAC 61.010 63.158 3.15 0.00 34.06 2.73
3347 3403 2.114331 GAGCGCCGCATCTACGAGTA 62.114 60.000 13.36 0.00 34.06 2.59
3348 3404 3.471244 GAGCGCCGCATCTACGAGT 62.471 63.158 13.36 0.00 34.06 4.18
3349 3405 2.727647 GAGCGCCGCATCTACGAG 60.728 66.667 13.36 0.00 34.06 4.18
3350 3406 4.607606 CGAGCGCCGCATCTACGA 62.608 66.667 13.36 0.00 34.06 3.43
3364 3420 4.838152 CACCACCATCCGCCCGAG 62.838 72.222 0.00 0.00 0.00 4.63
3367 3423 4.740822 AAGCACCACCATCCGCCC 62.741 66.667 0.00 0.00 0.00 6.13
3368 3424 1.815817 AAAAAGCACCACCATCCGCC 61.816 55.000 0.00 0.00 0.00 6.13
3369 3425 0.388520 GAAAAAGCACCACCATCCGC 60.389 55.000 0.00 0.00 0.00 5.54
3370 3426 1.247567 AGAAAAAGCACCACCATCCG 58.752 50.000 0.00 0.00 0.00 4.18
3371 3427 2.289010 CCAAGAAAAAGCACCACCATCC 60.289 50.000 0.00 0.00 0.00 3.51
3372 3428 2.627699 TCCAAGAAAAAGCACCACCATC 59.372 45.455 0.00 0.00 0.00 3.51
3373 3429 2.629617 CTCCAAGAAAAAGCACCACCAT 59.370 45.455 0.00 0.00 0.00 3.55
3374 3430 2.031120 CTCCAAGAAAAAGCACCACCA 58.969 47.619 0.00 0.00 0.00 4.17
3375 3431 2.031870 ACTCCAAGAAAAAGCACCACC 58.968 47.619 0.00 0.00 0.00 4.61
3376 3432 3.801114 AACTCCAAGAAAAAGCACCAC 57.199 42.857 0.00 0.00 0.00 4.16
3377 3433 3.513515 ACAAACTCCAAGAAAAAGCACCA 59.486 39.130 0.00 0.00 0.00 4.17
3378 3434 4.112634 GACAAACTCCAAGAAAAAGCACC 58.887 43.478 0.00 0.00 0.00 5.01
3379 3435 4.998788 AGACAAACTCCAAGAAAAAGCAC 58.001 39.130 0.00 0.00 0.00 4.40
3380 3436 5.659440 AAGACAAACTCCAAGAAAAAGCA 57.341 34.783 0.00 0.00 0.00 3.91
3381 3437 5.230097 CGAAAGACAAACTCCAAGAAAAAGC 59.770 40.000 0.00 0.00 0.00 3.51
3382 3438 5.743872 CCGAAAGACAAACTCCAAGAAAAAG 59.256 40.000 0.00 0.00 0.00 2.27
3383 3439 5.393678 CCCGAAAGACAAACTCCAAGAAAAA 60.394 40.000 0.00 0.00 0.00 1.94
3384 3440 4.097286 CCCGAAAGACAAACTCCAAGAAAA 59.903 41.667 0.00 0.00 0.00 2.29
3385 3441 3.630312 CCCGAAAGACAAACTCCAAGAAA 59.370 43.478 0.00 0.00 0.00 2.52
3386 3442 3.211045 CCCGAAAGACAAACTCCAAGAA 58.789 45.455 0.00 0.00 0.00 2.52
3387 3443 2.171870 ACCCGAAAGACAAACTCCAAGA 59.828 45.455 0.00 0.00 0.00 3.02
3388 3444 2.572290 ACCCGAAAGACAAACTCCAAG 58.428 47.619 0.00 0.00 0.00 3.61
3389 3445 2.721425 ACCCGAAAGACAAACTCCAA 57.279 45.000 0.00 0.00 0.00 3.53
3390 3446 2.721425 AACCCGAAAGACAAACTCCA 57.279 45.000 0.00 0.00 0.00 3.86
3391 3447 3.211865 AGAAACCCGAAAGACAAACTCC 58.788 45.455 0.00 0.00 0.00 3.85
3392 3448 5.121925 GGATAGAAACCCGAAAGACAAACTC 59.878 44.000 0.00 0.00 0.00 3.01
3393 3449 5.001874 GGATAGAAACCCGAAAGACAAACT 58.998 41.667 0.00 0.00 0.00 2.66
3394 3450 5.001874 AGGATAGAAACCCGAAAGACAAAC 58.998 41.667 0.00 0.00 0.00 2.93
3395 3451 5.012768 AGAGGATAGAAACCCGAAAGACAAA 59.987 40.000 0.00 0.00 0.00 2.83
3396 3452 4.530946 AGAGGATAGAAACCCGAAAGACAA 59.469 41.667 0.00 0.00 0.00 3.18
3397 3453 4.094476 AGAGGATAGAAACCCGAAAGACA 58.906 43.478 0.00 0.00 0.00 3.41
3398 3454 4.739587 AGAGGATAGAAACCCGAAAGAC 57.260 45.455 0.00 0.00 0.00 3.01
3399 3455 5.247564 TCAAAGAGGATAGAAACCCGAAAGA 59.752 40.000 0.00 0.00 0.00 2.52
3400 3456 5.488341 TCAAAGAGGATAGAAACCCGAAAG 58.512 41.667 0.00 0.00 0.00 2.62
3401 3457 5.012768 ACTCAAAGAGGATAGAAACCCGAAA 59.987 40.000 0.00 0.00 33.35 3.46
3402 3458 4.530946 ACTCAAAGAGGATAGAAACCCGAA 59.469 41.667 0.00 0.00 33.35 4.30
3403 3459 4.094476 ACTCAAAGAGGATAGAAACCCGA 58.906 43.478 0.00 0.00 33.35 5.14
3404 3460 4.473477 ACTCAAAGAGGATAGAAACCCG 57.527 45.455 0.00 0.00 33.35 5.28
3405 3461 4.870991 CGAACTCAAAGAGGATAGAAACCC 59.129 45.833 0.00 0.00 33.35 4.11
3406 3462 5.480205 ACGAACTCAAAGAGGATAGAAACC 58.520 41.667 0.00 0.00 33.35 3.27
3407 3463 5.577554 GGACGAACTCAAAGAGGATAGAAAC 59.422 44.000 0.00 0.00 33.35 2.78
3412 3468 4.956700 AGATGGACGAACTCAAAGAGGATA 59.043 41.667 0.00 0.00 33.35 2.59
3470 3526 5.026121 ACATCACTACTCAAGGAAGATGGA 58.974 41.667 0.00 0.00 37.39 3.41
3471 3527 5.350504 ACATCACTACTCAAGGAAGATGG 57.649 43.478 0.00 0.00 37.39 3.51
3478 3534 7.607250 AGAAACTCTAACATCACTACTCAAGG 58.393 38.462 0.00 0.00 0.00 3.61
3481 3537 6.430308 ACGAGAAACTCTAACATCACTACTCA 59.570 38.462 0.00 0.00 0.00 3.41
3485 3541 6.812879 TGACGAGAAACTCTAACATCACTA 57.187 37.500 0.00 0.00 0.00 2.74
3491 3547 4.556233 CCACATGACGAGAAACTCTAACA 58.444 43.478 0.00 0.00 0.00 2.41
3508 3564 1.269883 TGACACTAAACGTCGCCACAT 60.270 47.619 0.00 0.00 36.11 3.21
3536 3592 4.823157 TCGTTGAACCCTCGAATCAATTA 58.177 39.130 6.07 0.00 35.70 1.40
3541 3598 2.888594 TCATCGTTGAACCCTCGAATC 58.111 47.619 0.00 0.00 37.16 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.