Multiple sequence alignment - TraesCS1B01G286100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G286100 chr1B 100.000 4641 0 0 1 4641 497778125 497782765 0.000000e+00 8571.0
1 TraesCS1B01G286100 chr1B 78.180 857 152 26 2202 3042 497471869 497472706 8.900000e-142 514.0
2 TraesCS1B01G286100 chr1B 80.971 515 64 13 3326 3811 497473330 497473839 1.220000e-100 377.0
3 TraesCS1B01G286100 chr1B 81.149 435 73 9 2159 2590 497820523 497820951 1.600000e-89 340.0
4 TraesCS1B01G286100 chr1B 89.130 230 25 0 1521 1750 497471367 497471596 2.110000e-73 287.0
5 TraesCS1B01G286100 chr1B 80.831 313 37 9 1217 1519 497799604 497799903 1.680000e-54 224.0
6 TraesCS1B01G286100 chr1B 83.422 187 19 7 1929 2104 497779827 497780012 3.720000e-36 163.0
7 TraesCS1B01G286100 chr1B 83.422 187 19 7 1703 1888 497780053 497780228 3.720000e-36 163.0
8 TraesCS1B01G286100 chr1B 91.667 48 4 0 1929 1976 497471549 497471596 3.000000e-07 67.6
9 TraesCS1B01G286100 chr1A 92.787 2745 130 29 1929 4641 472141608 472144316 0.000000e+00 3910.0
10 TraesCS1B01G286100 chr1A 88.431 1625 116 34 319 1900 472140213 472141808 0.000000e+00 1893.0
11 TraesCS1B01G286100 chr1A 78.947 912 142 35 2205 3093 472080955 472081839 4.030000e-160 575.0
12 TraesCS1B01G286100 chr1A 77.153 871 127 35 2159 3024 472167489 472168292 1.530000e-119 440.0
13 TraesCS1B01G286100 chr1A 80.455 527 69 20 3322 3819 472082331 472082852 5.670000e-99 372.0
14 TraesCS1B01G286100 chr1A 87.013 231 30 0 1520 1750 472080451 472080681 1.280000e-65 261.0
15 TraesCS1B01G286100 chr1A 84.868 152 17 4 984 1132 472164518 472164666 1.040000e-31 148.0
16 TraesCS1B01G286100 chr1D 93.816 2539 114 16 2115 4641 372861189 372863696 0.000000e+00 3779.0
17 TraesCS1B01G286100 chr1D 91.571 1222 65 17 319 1517 372859550 372860756 0.000000e+00 1652.0
18 TraesCS1B01G286100 chr1D 79.476 955 157 24 2159 3093 372836067 372837002 3.910000e-180 641.0
19 TraesCS1B01G286100 chr1D 86.446 332 35 5 1517 1848 372860786 372861107 5.710000e-94 355.0
20 TraesCS1B01G286100 chr1D 80.785 484 65 17 3320 3779 372837485 372837964 2.050000e-93 353.0
21 TraesCS1B01G286100 chr1D 88.608 237 26 1 1515 1750 372835507 372835743 2.110000e-73 287.0
22 TraesCS1B01G286100 chr1D 81.699 306 44 12 1217 1517 372874876 372875174 1.290000e-60 244.0
23 TraesCS1B01G286100 chr1D 97.810 137 2 1 1929 2065 372860972 372861107 7.760000e-58 235.0
24 TraesCS1B01G286100 chr1D 86.010 193 20 5 3109 3301 372837129 372837314 2.830000e-47 200.0
25 TraesCS1B01G286100 chr1D 80.282 213 30 9 984 1193 372874619 372874822 2.890000e-32 150.0
26 TraesCS1B01G286100 chr1D 93.750 48 3 0 1929 1976 372835696 372835743 6.440000e-09 73.1
27 TraesCS1B01G286100 chr3D 86.777 121 10 5 2420 2540 433782158 433782044 3.770000e-26 130.0
28 TraesCS1B01G286100 chr4B 84.127 126 12 7 2416 2540 585646550 585646432 1.060000e-21 115.0
29 TraesCS1B01G286100 chr6D 83.200 125 15 5 2416 2540 37682959 37682841 4.910000e-20 110.0
30 TraesCS1B01G286100 chr6D 82.171 129 10 7 1802 1930 421040512 421040397 1.060000e-16 99.0
31 TraesCS1B01G286100 chr2D 82.400 125 16 5 2416 2540 191027656 191027538 2.280000e-18 104.0
32 TraesCS1B01G286100 chr2A 84.848 99 12 1 1802 1900 86671895 86671800 3.820000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G286100 chr1B 497778125 497782765 4640 False 2965.666667 8571 88.948000 1 4641 3 chr1B.!!$F4 4640
1 TraesCS1B01G286100 chr1B 497471367 497473839 2472 False 311.400000 514 84.987000 1521 3811 4 chr1B.!!$F3 2290
2 TraesCS1B01G286100 chr1A 472140213 472144316 4103 False 2901.500000 3910 90.609000 319 4641 2 chr1A.!!$F2 4322
3 TraesCS1B01G286100 chr1A 472080451 472082852 2401 False 402.666667 575 82.138333 1520 3819 3 chr1A.!!$F1 2299
4 TraesCS1B01G286100 chr1A 472164518 472168292 3774 False 294.000000 440 81.010500 984 3024 2 chr1A.!!$F3 2040
5 TraesCS1B01G286100 chr1D 372859550 372863696 4146 False 1505.250000 3779 92.410750 319 4641 4 chr1D.!!$F2 4322
6 TraesCS1B01G286100 chr1D 372835507 372837964 2457 False 310.820000 641 85.725800 1515 3779 5 chr1D.!!$F1 2264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.026156 GCAAAGCGGTGCACAAAAAC 59.974 50.0 20.43 2.37 44.29 2.43 F
514 548 0.036952 CCTCACAAGTCGCCATGTCT 60.037 55.0 0.00 0.00 0.00 3.41 F
1337 1450 0.038166 ACCACGGGTGAGCATGAAAT 59.962 50.0 0.00 0.00 32.98 2.17 F
1974 4185 0.779997 AATCCCCAGAACAGCAAGGT 59.220 50.0 0.00 0.00 0.00 3.50 F
2514 4826 0.023858 GCGTCAAGAAGAACGATCGC 59.976 55.0 16.60 0.00 36.06 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1423 0.038166 ATTTCATGCTCACCCGTGGT 59.962 50.000 0.00 0.00 35.62 4.16 R
1361 1474 0.234884 GGTCTGCGAAACTGAAACCG 59.765 55.000 0.00 0.00 0.00 4.44 R
2496 4808 0.291989 CGCGATCGTTCTTCTTGACG 59.708 55.000 17.81 3.49 0.00 4.35 R
3504 6228 0.185175 TGTAGCTCCTCCATCGGCTA 59.815 55.000 0.00 0.00 36.40 3.93 R
4354 7111 1.827969 CCCTTATGATAGAGGCGGAGG 59.172 57.143 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.801547 ACAAATTTCTTTTCAGTGATATGCG 57.198 32.000 0.00 0.00 0.00 4.73
26 27 7.370383 ACAAATTTCTTTTCAGTGATATGCGT 58.630 30.769 0.00 0.00 0.00 5.24
27 28 7.326789 ACAAATTTCTTTTCAGTGATATGCGTG 59.673 33.333 0.00 0.00 0.00 5.34
28 29 4.944962 TTCTTTTCAGTGATATGCGTGG 57.055 40.909 0.00 0.00 0.00 4.94
29 30 3.270027 TCTTTTCAGTGATATGCGTGGG 58.730 45.455 0.00 0.00 0.00 4.61
30 31 2.779755 TTTCAGTGATATGCGTGGGT 57.220 45.000 0.00 0.00 0.00 4.51
31 32 2.309528 TTCAGTGATATGCGTGGGTC 57.690 50.000 0.00 0.00 0.00 4.46
32 33 1.485124 TCAGTGATATGCGTGGGTCT 58.515 50.000 0.00 0.00 0.00 3.85
33 34 1.831106 TCAGTGATATGCGTGGGTCTT 59.169 47.619 0.00 0.00 0.00 3.01
34 35 1.935873 CAGTGATATGCGTGGGTCTTG 59.064 52.381 0.00 0.00 0.00 3.02
35 36 1.134401 AGTGATATGCGTGGGTCTTGG 60.134 52.381 0.00 0.00 0.00 3.61
36 37 0.180171 TGATATGCGTGGGTCTTGGG 59.820 55.000 0.00 0.00 0.00 4.12
37 38 0.535102 GATATGCGTGGGTCTTGGGG 60.535 60.000 0.00 0.00 0.00 4.96
38 39 1.279025 ATATGCGTGGGTCTTGGGGT 61.279 55.000 0.00 0.00 0.00 4.95
39 40 0.618107 TATGCGTGGGTCTTGGGGTA 60.618 55.000 0.00 0.00 0.00 3.69
40 41 1.910580 ATGCGTGGGTCTTGGGGTAG 61.911 60.000 0.00 0.00 0.00 3.18
41 42 2.267961 CGTGGGTCTTGGGGTAGC 59.732 66.667 0.00 0.00 0.00 3.58
42 43 2.675371 GTGGGTCTTGGGGTAGCC 59.325 66.667 1.07 1.07 0.00 3.93
43 44 2.208640 TGGGTCTTGGGGTAGCCA 59.791 61.111 14.06 0.00 40.82 4.75
44 45 2.228480 TGGGTCTTGGGGTAGCCAC 61.228 63.158 14.06 1.66 38.31 5.01
45 46 2.267961 GGTCTTGGGGTAGCCACG 59.732 66.667 14.06 0.00 0.00 4.94
46 47 2.590114 GGTCTTGGGGTAGCCACGT 61.590 63.158 14.06 0.00 0.00 4.49
47 48 1.079336 GTCTTGGGGTAGCCACGTC 60.079 63.158 14.06 0.00 0.00 4.34
48 49 2.125673 CTTGGGGTAGCCACGTCG 60.126 66.667 14.06 0.00 0.00 5.12
49 50 2.601067 TTGGGGTAGCCACGTCGA 60.601 61.111 14.06 0.00 0.00 4.20
50 51 2.830704 CTTGGGGTAGCCACGTCGAC 62.831 65.000 14.06 5.18 0.00 4.20
51 52 4.139234 GGGGTAGCCACGTCGACC 62.139 72.222 14.06 0.00 0.00 4.79
52 53 4.487412 GGGTAGCCACGTCGACCG 62.487 72.222 10.58 7.90 44.03 4.79
53 54 4.487412 GGTAGCCACGTCGACCGG 62.487 72.222 10.58 12.09 42.24 5.28
54 55 4.487412 GTAGCCACGTCGACCGGG 62.487 72.222 17.81 16.06 42.24 5.73
55 56 4.720902 TAGCCACGTCGACCGGGA 62.721 66.667 20.91 1.62 45.03 5.14
62 63 3.782443 GTCGACCGGGATGCCCTT 61.782 66.667 6.32 0.00 42.67 3.95
63 64 3.467226 TCGACCGGGATGCCCTTC 61.467 66.667 6.32 0.00 42.67 3.46
64 65 3.470888 CGACCGGGATGCCCTTCT 61.471 66.667 6.32 0.00 42.67 2.85
65 66 2.998949 GACCGGGATGCCCTTCTT 59.001 61.111 6.32 0.00 42.67 2.52
66 67 1.153147 GACCGGGATGCCCTTCTTC 60.153 63.158 6.32 0.00 42.67 2.87
67 68 2.203070 CCGGGATGCCCTTCTTCG 60.203 66.667 0.00 0.00 42.67 3.79
68 69 2.584608 CGGGATGCCCTTCTTCGT 59.415 61.111 0.00 0.00 42.67 3.85
69 70 1.815421 CGGGATGCCCTTCTTCGTG 60.815 63.158 0.00 0.00 42.67 4.35
70 71 1.452108 GGGATGCCCTTCTTCGTGG 60.452 63.158 0.00 0.00 41.34 4.94
71 72 1.602237 GGATGCCCTTCTTCGTGGA 59.398 57.895 0.00 0.00 0.00 4.02
72 73 0.744771 GGATGCCCTTCTTCGTGGAC 60.745 60.000 0.00 0.00 0.00 4.02
73 74 1.079127 ATGCCCTTCTTCGTGGACG 60.079 57.895 0.00 0.00 41.45 4.79
74 75 3.119096 GCCCTTCTTCGTGGACGC 61.119 66.667 0.00 0.00 39.60 5.19
75 76 2.809601 CCCTTCTTCGTGGACGCG 60.810 66.667 3.53 3.53 39.60 6.01
76 77 2.049433 CCTTCTTCGTGGACGCGT 60.049 61.111 13.85 13.85 39.60 6.01
77 78 1.663702 CCTTCTTCGTGGACGCGTT 60.664 57.895 15.53 0.00 39.60 4.84
78 79 1.487231 CTTCTTCGTGGACGCGTTG 59.513 57.895 15.53 4.11 39.60 4.10
79 80 1.213094 CTTCTTCGTGGACGCGTTGT 61.213 55.000 15.53 0.00 39.60 3.32
80 81 0.030504 TTCTTCGTGGACGCGTTGTA 59.969 50.000 15.53 0.00 39.60 2.41
81 82 0.030504 TCTTCGTGGACGCGTTGTAA 59.969 50.000 15.53 3.22 39.60 2.41
82 83 0.160182 CTTCGTGGACGCGTTGTAAC 59.840 55.000 15.53 8.82 39.60 2.50
83 84 0.527169 TTCGTGGACGCGTTGTAACA 60.527 50.000 15.53 5.27 39.60 2.41
84 85 0.935831 TCGTGGACGCGTTGTAACAG 60.936 55.000 15.53 1.75 39.60 3.16
85 86 1.210545 CGTGGACGCGTTGTAACAGT 61.211 55.000 15.53 0.00 0.00 3.55
86 87 0.932399 GTGGACGCGTTGTAACAGTT 59.068 50.000 15.53 0.00 0.00 3.16
87 88 1.328374 GTGGACGCGTTGTAACAGTTT 59.672 47.619 15.53 0.00 0.00 2.66
88 89 2.008329 TGGACGCGTTGTAACAGTTTT 58.992 42.857 15.53 0.00 0.00 2.43
89 90 2.030701 TGGACGCGTTGTAACAGTTTTC 59.969 45.455 15.53 0.00 0.00 2.29
90 91 2.030701 GGACGCGTTGTAACAGTTTTCA 59.969 45.455 15.53 0.00 0.00 2.69
91 92 3.303526 GGACGCGTTGTAACAGTTTTCAT 60.304 43.478 15.53 0.00 0.00 2.57
92 93 3.868835 ACGCGTTGTAACAGTTTTCATC 58.131 40.909 5.58 0.00 0.00 2.92
93 94 3.223157 CGCGTTGTAACAGTTTTCATCC 58.777 45.455 0.00 0.00 0.00 3.51
94 95 3.223157 GCGTTGTAACAGTTTTCATCCG 58.777 45.455 0.00 0.00 0.00 4.18
95 96 3.805823 CGTTGTAACAGTTTTCATCCGG 58.194 45.455 0.00 0.00 0.00 5.14
96 97 3.364565 CGTTGTAACAGTTTTCATCCGGG 60.365 47.826 0.00 0.00 0.00 5.73
97 98 3.495434 TGTAACAGTTTTCATCCGGGT 57.505 42.857 0.00 0.00 0.00 5.28
98 99 3.822940 TGTAACAGTTTTCATCCGGGTT 58.177 40.909 0.00 0.00 0.00 4.11
99 100 4.208746 TGTAACAGTTTTCATCCGGGTTT 58.791 39.130 0.00 0.00 0.00 3.27
100 101 4.645588 TGTAACAGTTTTCATCCGGGTTTT 59.354 37.500 0.00 0.00 0.00 2.43
101 102 4.746535 AACAGTTTTCATCCGGGTTTTT 57.253 36.364 0.00 0.00 0.00 1.94
121 122 6.927294 TTTTTGTCAATTAACGGGCAATTT 57.073 29.167 0.00 0.00 0.00 1.82
122 123 6.927294 TTTTGTCAATTAACGGGCAATTTT 57.073 29.167 0.00 0.00 0.00 1.82
123 124 6.532365 TTTGTCAATTAACGGGCAATTTTC 57.468 33.333 0.00 0.00 0.00 2.29
124 125 4.230657 TGTCAATTAACGGGCAATTTTCG 58.769 39.130 0.00 0.00 0.00 3.46
125 126 4.231439 GTCAATTAACGGGCAATTTTCGT 58.769 39.130 0.00 0.00 38.89 3.85
126 127 4.322539 GTCAATTAACGGGCAATTTTCGTC 59.677 41.667 0.00 0.00 36.01 4.20
127 128 4.216687 TCAATTAACGGGCAATTTTCGTCT 59.783 37.500 0.00 0.00 36.01 4.18
128 129 5.411977 TCAATTAACGGGCAATTTTCGTCTA 59.588 36.000 0.00 0.00 36.01 2.59
129 130 6.094325 TCAATTAACGGGCAATTTTCGTCTAT 59.906 34.615 0.00 0.00 36.01 1.98
130 131 5.473796 TTAACGGGCAATTTTCGTCTATC 57.526 39.130 0.00 0.00 36.01 2.08
131 132 2.285977 ACGGGCAATTTTCGTCTATCC 58.714 47.619 0.00 0.00 30.89 2.59
132 133 2.093128 ACGGGCAATTTTCGTCTATCCT 60.093 45.455 0.00 0.00 30.89 3.24
133 134 2.943033 CGGGCAATTTTCGTCTATCCTT 59.057 45.455 0.00 0.00 0.00 3.36
134 135 3.377172 CGGGCAATTTTCGTCTATCCTTT 59.623 43.478 0.00 0.00 0.00 3.11
135 136 4.142469 CGGGCAATTTTCGTCTATCCTTTT 60.142 41.667 0.00 0.00 0.00 2.27
136 137 5.621329 CGGGCAATTTTCGTCTATCCTTTTT 60.621 40.000 0.00 0.00 0.00 1.94
137 138 6.403855 CGGGCAATTTTCGTCTATCCTTTTTA 60.404 38.462 0.00 0.00 0.00 1.52
138 139 7.317390 GGGCAATTTTCGTCTATCCTTTTTAA 58.683 34.615 0.00 0.00 0.00 1.52
139 140 7.979537 GGGCAATTTTCGTCTATCCTTTTTAAT 59.020 33.333 0.00 0.00 0.00 1.40
146 147 7.775397 TCGTCTATCCTTTTTAATAAACCGG 57.225 36.000 0.00 0.00 0.00 5.28
147 148 7.555087 TCGTCTATCCTTTTTAATAAACCGGA 58.445 34.615 9.46 5.13 31.45 5.14
148 149 7.707893 TCGTCTATCCTTTTTAATAAACCGGAG 59.292 37.037 9.46 0.00 30.80 4.63
149 150 7.493645 CGTCTATCCTTTTTAATAAACCGGAGT 59.506 37.037 9.46 0.00 30.80 3.85
150 151 9.170734 GTCTATCCTTTTTAATAAACCGGAGTT 57.829 33.333 9.46 4.11 38.03 3.01
151 152 9.387257 TCTATCCTTTTTAATAAACCGGAGTTC 57.613 33.333 9.46 0.00 34.19 3.01
152 153 9.392259 CTATCCTTTTTAATAAACCGGAGTTCT 57.608 33.333 9.46 0.00 34.19 3.01
154 155 9.743581 ATCCTTTTTAATAAACCGGAGTTCTAA 57.256 29.630 9.46 0.00 34.19 2.10
155 156 9.223099 TCCTTTTTAATAAACCGGAGTTCTAAG 57.777 33.333 9.46 0.33 34.19 2.18
156 157 8.456471 CCTTTTTAATAAACCGGAGTTCTAAGG 58.544 37.037 9.46 6.03 34.19 2.69
157 158 9.223099 CTTTTTAATAAACCGGAGTTCTAAGGA 57.777 33.333 9.46 0.00 34.19 3.36
158 159 8.552083 TTTTAATAAACCGGAGTTCTAAGGAC 57.448 34.615 9.46 0.00 34.19 3.85
159 160 5.750352 AATAAACCGGAGTTCTAAGGACA 57.250 39.130 9.46 0.00 34.19 4.02
160 161 5.952347 ATAAACCGGAGTTCTAAGGACAT 57.048 39.130 9.46 0.00 34.19 3.06
161 162 3.611766 AACCGGAGTTCTAAGGACATG 57.388 47.619 9.46 0.00 0.00 3.21
162 163 2.816411 ACCGGAGTTCTAAGGACATGA 58.184 47.619 9.46 0.00 0.00 3.07
163 164 2.496470 ACCGGAGTTCTAAGGACATGAC 59.504 50.000 9.46 0.00 0.00 3.06
164 165 2.761208 CCGGAGTTCTAAGGACATGACT 59.239 50.000 0.00 0.00 0.00 3.41
165 166 3.195825 CCGGAGTTCTAAGGACATGACTT 59.804 47.826 0.00 6.18 0.00 3.01
166 167 4.401519 CCGGAGTTCTAAGGACATGACTTA 59.598 45.833 0.00 7.06 0.00 2.24
167 168 5.105473 CCGGAGTTCTAAGGACATGACTTAA 60.105 44.000 0.00 0.00 30.68 1.85
168 169 6.037098 CGGAGTTCTAAGGACATGACTTAAG 58.963 44.000 0.00 0.00 30.68 1.85
169 170 6.127703 CGGAGTTCTAAGGACATGACTTAAGA 60.128 42.308 10.09 5.20 30.68 2.10
170 171 7.577046 CGGAGTTCTAAGGACATGACTTAAGAA 60.577 40.741 10.09 10.05 30.68 2.52
171 172 8.095169 GGAGTTCTAAGGACATGACTTAAGAAA 58.905 37.037 10.09 0.00 30.68 2.52
172 173 9.490379 GAGTTCTAAGGACATGACTTAAGAAAA 57.510 33.333 10.09 0.00 30.68 2.29
173 174 9.495572 AGTTCTAAGGACATGACTTAAGAAAAG 57.504 33.333 10.09 0.00 30.68 2.27
174 175 9.490379 GTTCTAAGGACATGACTTAAGAAAAGA 57.510 33.333 10.09 0.00 30.68 2.52
180 181 8.797438 AGGACATGACTTAAGAAAAGAAAATCC 58.203 33.333 10.09 4.46 0.00 3.01
181 182 8.029522 GGACATGACTTAAGAAAAGAAAATCCC 58.970 37.037 10.09 0.00 0.00 3.85
182 183 8.712228 ACATGACTTAAGAAAAGAAAATCCCT 57.288 30.769 10.09 0.00 0.00 4.20
183 184 8.797438 ACATGACTTAAGAAAAGAAAATCCCTC 58.203 33.333 10.09 0.00 0.00 4.30
184 185 9.018582 CATGACTTAAGAAAAGAAAATCCCTCT 57.981 33.333 10.09 0.00 0.00 3.69
185 186 8.622948 TGACTTAAGAAAAGAAAATCCCTCTC 57.377 34.615 10.09 0.00 0.00 3.20
186 187 8.217799 TGACTTAAGAAAAGAAAATCCCTCTCA 58.782 33.333 10.09 0.00 0.00 3.27
187 188 9.237187 GACTTAAGAAAAGAAAATCCCTCTCAT 57.763 33.333 10.09 0.00 0.00 2.90
188 189 9.237187 ACTTAAGAAAAGAAAATCCCTCTCATC 57.763 33.333 10.09 0.00 0.00 2.92
189 190 8.581253 TTAAGAAAAGAAAATCCCTCTCATCC 57.419 34.615 0.00 0.00 0.00 3.51
190 191 6.144845 AGAAAAGAAAATCCCTCTCATCCA 57.855 37.500 0.00 0.00 0.00 3.41
191 192 6.739664 AGAAAAGAAAATCCCTCTCATCCAT 58.260 36.000 0.00 0.00 0.00 3.41
192 193 6.832900 AGAAAAGAAAATCCCTCTCATCCATC 59.167 38.462 0.00 0.00 0.00 3.51
193 194 5.722172 AAGAAAATCCCTCTCATCCATCA 57.278 39.130 0.00 0.00 0.00 3.07
194 195 5.926580 AGAAAATCCCTCTCATCCATCAT 57.073 39.130 0.00 0.00 0.00 2.45
195 196 5.632118 AGAAAATCCCTCTCATCCATCATG 58.368 41.667 0.00 0.00 0.00 3.07
196 197 3.436577 AATCCCTCTCATCCATCATGC 57.563 47.619 0.00 0.00 31.70 4.06
197 198 1.062364 TCCCTCTCATCCATCATGCC 58.938 55.000 0.00 0.00 31.70 4.40
198 199 0.769247 CCCTCTCATCCATCATGCCA 59.231 55.000 0.00 0.00 31.70 4.92
199 200 1.354705 CCCTCTCATCCATCATGCCAT 59.645 52.381 0.00 0.00 31.70 4.40
200 201 2.437413 CCTCTCATCCATCATGCCATG 58.563 52.381 0.00 0.00 31.70 3.66
201 202 2.437413 CTCTCATCCATCATGCCATGG 58.563 52.381 7.63 7.63 44.45 3.66
202 203 1.778484 TCTCATCCATCATGCCATGGT 59.222 47.619 14.67 0.00 43.62 3.55
203 204 2.981081 TCTCATCCATCATGCCATGGTA 59.019 45.455 14.67 9.89 43.62 3.25
204 205 3.079578 CTCATCCATCATGCCATGGTAC 58.920 50.000 14.67 0.00 43.62 3.34
205 206 2.165167 CATCCATCATGCCATGGTACC 58.835 52.381 14.67 4.43 43.62 3.34
206 207 1.220703 TCCATCATGCCATGGTACCA 58.779 50.000 18.99 18.99 43.62 3.25
207 208 1.782140 TCCATCATGCCATGGTACCAT 59.218 47.619 22.23 22.23 43.62 3.55
217 218 2.224606 CATGGTACCATGTGATGAGCC 58.775 52.381 36.87 0.00 46.20 4.70
218 219 0.546122 TGGTACCATGTGATGAGCCC 59.454 55.000 11.60 0.00 0.00 5.19
219 220 0.546122 GGTACCATGTGATGAGCCCA 59.454 55.000 7.15 0.00 0.00 5.36
220 221 1.143684 GGTACCATGTGATGAGCCCAT 59.856 52.381 7.15 0.00 35.29 4.00
221 222 6.574374 ATGGTACCATGTGATGAGCCCATC 62.574 50.000 26.82 0.40 41.09 3.51
233 234 2.194056 CCCATCGGCTCCAAGCAT 59.806 61.111 0.86 0.00 44.75 3.79
234 235 1.895707 CCCATCGGCTCCAAGCATC 60.896 63.158 0.86 0.00 44.75 3.91
235 236 1.153107 CCATCGGCTCCAAGCATCA 60.153 57.895 0.86 0.00 44.75 3.07
236 237 0.749091 CCATCGGCTCCAAGCATCAA 60.749 55.000 0.86 0.00 44.75 2.57
237 238 1.097232 CATCGGCTCCAAGCATCAAA 58.903 50.000 0.86 0.00 44.75 2.69
238 239 1.679680 CATCGGCTCCAAGCATCAAAT 59.320 47.619 0.86 0.00 44.75 2.32
239 240 1.838112 TCGGCTCCAAGCATCAAATT 58.162 45.000 0.86 0.00 44.75 1.82
240 241 1.473677 TCGGCTCCAAGCATCAAATTG 59.526 47.619 0.86 0.00 44.75 2.32
241 242 1.470285 CGGCTCCAAGCATCAAATTGG 60.470 52.381 0.86 0.00 44.75 3.16
242 243 1.648504 GCTCCAAGCATCAAATTGGC 58.351 50.000 0.00 0.00 44.67 4.52
243 244 1.066716 GCTCCAAGCATCAAATTGGCA 60.067 47.619 0.00 0.00 44.67 4.92
244 245 2.613474 GCTCCAAGCATCAAATTGGCAA 60.613 45.455 0.68 0.68 44.67 4.52
245 246 3.666274 CTCCAAGCATCAAATTGGCAAA 58.334 40.909 3.01 0.00 44.67 3.68
246 247 3.666274 TCCAAGCATCAAATTGGCAAAG 58.334 40.909 3.01 0.00 44.67 2.77
247 248 2.160813 CCAAGCATCAAATTGGCAAAGC 59.839 45.455 3.01 2.14 39.58 3.51
248 249 1.717194 AGCATCAAATTGGCAAAGCG 58.283 45.000 3.01 0.00 0.00 4.68
249 250 0.722848 GCATCAAATTGGCAAAGCGG 59.277 50.000 3.01 0.00 0.00 5.52
250 251 1.940752 GCATCAAATTGGCAAAGCGGT 60.941 47.619 3.01 0.00 0.00 5.68
251 252 1.727880 CATCAAATTGGCAAAGCGGTG 59.272 47.619 3.01 0.00 0.00 4.94
252 253 0.599728 TCAAATTGGCAAAGCGGTGC 60.600 50.000 3.01 6.14 44.14 5.01
253 254 0.879400 CAAATTGGCAAAGCGGTGCA 60.879 50.000 15.27 0.00 46.81 4.57
254 255 0.879839 AAATTGGCAAAGCGGTGCAC 60.880 50.000 8.80 8.80 46.81 4.57
255 256 2.025767 AATTGGCAAAGCGGTGCACA 62.026 50.000 20.43 8.74 46.81 4.57
256 257 2.025767 ATTGGCAAAGCGGTGCACAA 62.026 50.000 20.43 15.32 46.81 3.33
257 258 2.105930 GGCAAAGCGGTGCACAAA 59.894 55.556 20.43 0.00 46.81 2.83
258 259 1.520342 GGCAAAGCGGTGCACAAAA 60.520 52.632 20.43 0.00 46.81 2.44
259 260 1.086634 GGCAAAGCGGTGCACAAAAA 61.087 50.000 20.43 0.00 46.81 1.94
260 261 0.026156 GCAAAGCGGTGCACAAAAAC 59.974 50.000 20.43 2.37 44.29 2.43
261 262 1.354040 CAAAGCGGTGCACAAAAACA 58.646 45.000 20.43 0.00 0.00 2.83
262 263 1.728971 CAAAGCGGTGCACAAAAACAA 59.271 42.857 20.43 0.00 0.00 2.83
263 264 2.086054 AAGCGGTGCACAAAAACAAA 57.914 40.000 20.43 0.00 0.00 2.83
264 265 2.086054 AGCGGTGCACAAAAACAAAA 57.914 40.000 20.43 0.00 0.00 2.44
265 266 2.417719 AGCGGTGCACAAAAACAAAAA 58.582 38.095 20.43 0.00 0.00 1.94
266 267 2.158645 AGCGGTGCACAAAAACAAAAAC 59.841 40.909 20.43 0.00 0.00 2.43
267 268 2.752206 CGGTGCACAAAAACAAAAACG 58.248 42.857 20.43 4.19 0.00 3.60
268 269 2.155924 CGGTGCACAAAAACAAAAACGT 59.844 40.909 20.43 0.00 0.00 3.99
269 270 3.474304 GGTGCACAAAAACAAAAACGTG 58.526 40.909 20.43 0.00 0.00 4.49
270 271 3.059529 GGTGCACAAAAACAAAAACGTGT 60.060 39.130 20.43 0.00 0.00 4.49
271 272 4.138103 GTGCACAAAAACAAAAACGTGTC 58.862 39.130 13.17 0.00 0.00 3.67
272 273 3.121328 TGCACAAAAACAAAAACGTGTCG 60.121 39.130 0.00 0.00 0.00 4.35
273 274 3.121295 GCACAAAAACAAAAACGTGTCGT 60.121 39.130 0.00 0.00 43.97 4.34
274 275 4.370212 CACAAAAACAAAAACGTGTCGTG 58.630 39.130 0.00 0.00 39.99 4.35
275 276 4.043073 ACAAAAACAAAAACGTGTCGTGT 58.957 34.783 0.00 0.00 39.99 4.49
276 277 4.503370 ACAAAAACAAAAACGTGTCGTGTT 59.497 33.333 2.64 2.64 39.10 3.32
277 278 4.872051 AAAACAAAAACGTGTCGTGTTC 57.128 36.364 7.90 0.00 36.19 3.18
278 279 2.530832 ACAAAAACGTGTCGTGTTCC 57.469 45.000 0.00 0.00 36.19 3.62
279 280 1.201943 ACAAAAACGTGTCGTGTTCCG 60.202 47.619 0.00 0.00 36.19 4.30
280 281 0.247775 AAAAACGTGTCGTGTTCCGC 60.248 50.000 0.00 0.00 36.19 5.54
281 282 2.350785 AAAACGTGTCGTGTTCCGCG 62.351 55.000 0.00 0.00 39.99 6.46
282 283 4.557605 ACGTGTCGTGTTCCGCGT 62.558 61.111 4.92 0.00 42.38 6.01
283 284 3.749373 CGTGTCGTGTTCCGCGTC 61.749 66.667 4.92 0.00 38.57 5.19
284 285 3.400590 GTGTCGTGTTCCGCGTCC 61.401 66.667 4.92 0.00 38.57 4.79
285 286 4.986587 TGTCGTGTTCCGCGTCCG 62.987 66.667 4.92 0.00 38.57 4.79
286 287 4.988486 GTCGTGTTCCGCGTCCGT 62.988 66.667 4.92 0.00 38.57 4.69
287 288 3.353029 TCGTGTTCCGCGTCCGTA 61.353 61.111 4.92 0.00 38.57 4.02
288 289 2.872925 CGTGTTCCGCGTCCGTAG 60.873 66.667 4.92 0.00 32.40 3.51
335 336 7.365497 AGAACTGGGAATTTTGTTTCTGAAT 57.635 32.000 0.00 0.00 0.00 2.57
352 353 4.521130 TGAATATGATCAGAGCCGGTAC 57.479 45.455 1.90 0.00 0.00 3.34
353 354 3.258372 TGAATATGATCAGAGCCGGTACC 59.742 47.826 1.90 0.16 0.00 3.34
356 357 2.043248 ATCAGAGCCGGTACCCGT 60.043 61.111 6.25 0.00 46.80 5.28
357 358 1.673808 GATCAGAGCCGGTACCCGTT 61.674 60.000 6.25 0.00 46.80 4.44
359 360 1.447314 CAGAGCCGGTACCCGTTTC 60.447 63.158 6.25 2.86 46.80 2.78
360 361 1.909781 AGAGCCGGTACCCGTTTCA 60.910 57.895 6.25 0.00 46.80 2.69
361 362 1.219935 GAGCCGGTACCCGTTTCAT 59.780 57.895 6.25 0.00 46.80 2.57
485 519 1.612442 CCGGTCCTCTCCCTTTCCA 60.612 63.158 0.00 0.00 0.00 3.53
487 521 0.466124 CGGTCCTCTCCCTTTCCATC 59.534 60.000 0.00 0.00 0.00 3.51
497 531 1.305623 CTTTCCATCCTGCCTGCCT 59.694 57.895 0.00 0.00 0.00 4.75
514 548 0.036952 CCTCACAAGTCGCCATGTCT 60.037 55.000 0.00 0.00 0.00 3.41
522 556 1.754803 AGTCGCCATGTCTATTTCCGA 59.245 47.619 0.00 0.00 0.00 4.55
523 557 2.167693 AGTCGCCATGTCTATTTCCGAA 59.832 45.455 0.00 0.00 0.00 4.30
550 584 2.874701 AGCTATCATCAATTGCACGGAC 59.125 45.455 0.00 0.00 38.41 4.79
556 590 0.396435 TCAATTGCACGGACCAGAGT 59.604 50.000 0.00 0.00 0.00 3.24
557 591 0.798776 CAATTGCACGGACCAGAGTC 59.201 55.000 0.00 0.00 42.73 3.36
558 592 0.396435 AATTGCACGGACCAGAGTCA 59.604 50.000 0.00 0.00 45.48 3.41
559 593 0.320771 ATTGCACGGACCAGAGTCAC 60.321 55.000 0.00 0.00 45.48 3.67
563 598 0.318441 CACGGACCAGAGTCACATGT 59.682 55.000 0.00 0.00 45.48 3.21
575 610 0.322726 TCACATGTGACATGGCCTGG 60.323 55.000 27.23 12.35 34.14 4.45
699 741 4.407945 GGGGTAGTACTATTTGCAAGAGGA 59.592 45.833 5.75 3.76 0.00 3.71
700 742 5.358090 GGGTAGTACTATTTGCAAGAGGAC 58.642 45.833 14.96 14.96 0.00 3.85
791 835 1.750572 GCGATCACAAGCTGCTCTCG 61.751 60.000 1.00 8.20 0.00 4.04
799 843 2.821810 GCTGCTCTCGGCTTTCCC 60.822 66.667 0.00 0.00 41.36 3.97
909 953 0.812412 CCGTCGAGTCTCCTCCTCTC 60.812 65.000 0.00 0.00 33.93 3.20
910 954 0.108089 CGTCGAGTCTCCTCCTCTCA 60.108 60.000 0.00 0.00 33.93 3.27
911 955 1.663695 GTCGAGTCTCCTCCTCTCAG 58.336 60.000 0.00 0.00 33.93 3.35
912 956 1.065709 GTCGAGTCTCCTCCTCTCAGT 60.066 57.143 0.00 0.00 33.93 3.41
913 957 1.208535 TCGAGTCTCCTCCTCTCAGTC 59.791 57.143 0.00 0.00 33.93 3.51
914 958 1.745827 CGAGTCTCCTCCTCTCAGTCC 60.746 61.905 0.00 0.00 33.93 3.85
915 959 1.564348 GAGTCTCCTCCTCTCAGTCCT 59.436 57.143 0.00 0.00 0.00 3.85
916 960 1.564348 AGTCTCCTCCTCTCAGTCCTC 59.436 57.143 0.00 0.00 0.00 3.71
917 961 1.564348 GTCTCCTCCTCTCAGTCCTCT 59.436 57.143 0.00 0.00 0.00 3.69
1113 1169 0.543749 CCTCCTTCCTCGCCAATCTT 59.456 55.000 0.00 0.00 0.00 2.40
1143 1201 2.310349 TCCTTCTCAGTCTCTGTAGCCT 59.690 50.000 0.00 0.00 32.61 4.58
1156 1214 6.926272 GTCTCTGTAGCCTATAACAATCCAAG 59.074 42.308 0.00 0.00 0.00 3.61
1157 1215 5.611374 TCTGTAGCCTATAACAATCCAAGC 58.389 41.667 0.00 0.00 0.00 4.01
1224 1286 4.711721 CGAATTACCCATCGCATGTATTG 58.288 43.478 0.00 0.00 31.71 1.90
1318 1423 2.328473 CTCTTGCATCGACGACAGAAA 58.672 47.619 0.00 0.00 0.00 2.52
1337 1450 0.038166 ACCACGGGTGAGCATGAAAT 59.962 50.000 0.00 0.00 32.98 2.17
1361 1474 6.012658 TCAATCATGAAACTTACCTTGTGC 57.987 37.500 0.00 0.00 30.99 4.57
1377 1490 4.515107 GCGGTTTCAGTTTCGCAG 57.485 55.556 0.00 0.00 46.33 5.18
1402 1515 1.546476 CCTCACTCTTTACGCCACTCT 59.454 52.381 0.00 0.00 0.00 3.24
1613 1782 1.668151 GTTGGACTGCTGGACCGTC 60.668 63.158 0.00 0.00 0.00 4.79
1640 1809 3.904339 GGGTCATCATACTCACCTGGTAT 59.096 47.826 0.00 0.00 0.00 2.73
1642 1811 4.345257 GGTCATCATACTCACCTGGTATGT 59.655 45.833 0.00 4.03 43.85 2.29
1790 3998 6.153067 CCAACAAGTTTAATTACAATGCCGA 58.847 36.000 0.00 0.00 0.00 5.54
1803 4011 8.732746 ATTACAATGCCGATTACTAAAAGTCT 57.267 30.769 0.00 0.00 0.00 3.24
1804 4012 6.663944 ACAATGCCGATTACTAAAAGTCTC 57.336 37.500 0.00 0.00 0.00 3.36
1805 4013 6.407202 ACAATGCCGATTACTAAAAGTCTCT 58.593 36.000 0.00 0.00 0.00 3.10
1810 4021 5.288952 GCCGATTACTAAAAGTCTCTGTGAC 59.711 44.000 1.75 1.75 45.67 3.67
1903 4114 9.877178 AGAAGAAATCACGATTATACAGTTCTT 57.123 29.630 0.00 0.00 0.00 2.52
1905 4116 9.653287 AAGAAATCACGATTATACAGTTCTTCA 57.347 29.630 0.00 0.00 0.00 3.02
1906 4117 9.823647 AGAAATCACGATTATACAGTTCTTCAT 57.176 29.630 0.00 0.00 0.00 2.57
1919 4130 9.787435 ATACAGTTCTTCATAGTAGTCTAGGAG 57.213 37.037 0.00 0.00 38.05 3.69
1920 4131 7.863722 ACAGTTCTTCATAGTAGTCTAGGAGA 58.136 38.462 0.00 0.00 38.05 3.71
1921 4132 8.499406 ACAGTTCTTCATAGTAGTCTAGGAGAT 58.501 37.037 0.00 0.00 38.05 2.75
1922 4133 8.999431 CAGTTCTTCATAGTAGTCTAGGAGATC 58.001 40.741 0.00 0.00 38.05 2.75
1923 4134 8.719596 AGTTCTTCATAGTAGTCTAGGAGATCA 58.280 37.037 0.00 0.00 38.05 2.92
1924 4135 9.344772 GTTCTTCATAGTAGTCTAGGAGATCAA 57.655 37.037 0.00 0.00 38.05 2.57
1925 4136 9.922477 TTCTTCATAGTAGTCTAGGAGATCAAA 57.078 33.333 0.00 0.00 38.05 2.69
1933 4144 9.138596 AGTAGTCTAGGAGATCAAATTTAGGTC 57.861 37.037 0.00 0.00 0.00 3.85
1934 4145 9.138596 GTAGTCTAGGAGATCAAATTTAGGTCT 57.861 37.037 0.00 3.88 0.00 3.85
1935 4146 8.616799 AGTCTAGGAGATCAAATTTAGGTCTT 57.383 34.615 0.00 0.00 0.00 3.01
1936 4147 8.482128 AGTCTAGGAGATCAAATTTAGGTCTTG 58.518 37.037 0.00 0.00 0.00 3.02
1937 4148 8.261522 GTCTAGGAGATCAAATTTAGGTCTTGT 58.738 37.037 0.00 0.87 0.00 3.16
1938 4149 8.260818 TCTAGGAGATCAAATTTAGGTCTTGTG 58.739 37.037 0.00 0.00 0.00 3.33
1939 4150 5.649831 AGGAGATCAAATTTAGGTCTTGTGC 59.350 40.000 0.00 0.00 0.00 4.57
1940 4151 5.649831 GGAGATCAAATTTAGGTCTTGTGCT 59.350 40.000 0.00 0.00 0.00 4.40
1941 4152 6.183360 GGAGATCAAATTTAGGTCTTGTGCTC 60.183 42.308 0.00 0.00 0.00 4.26
1942 4153 5.649831 AGATCAAATTTAGGTCTTGTGCTCC 59.350 40.000 0.00 0.00 0.00 4.70
1943 4154 4.985538 TCAAATTTAGGTCTTGTGCTCCT 58.014 39.130 0.00 0.00 35.60 3.69
1944 4155 5.385198 TCAAATTTAGGTCTTGTGCTCCTT 58.615 37.500 0.00 0.00 33.34 3.36
1945 4156 5.833131 TCAAATTTAGGTCTTGTGCTCCTTT 59.167 36.000 0.00 0.00 33.34 3.11
1946 4157 5.966742 AATTTAGGTCTTGTGCTCCTTTC 57.033 39.130 0.00 0.00 33.34 2.62
1947 4158 4.431416 TTTAGGTCTTGTGCTCCTTTCA 57.569 40.909 0.00 0.00 33.34 2.69
1948 4159 2.557920 AGGTCTTGTGCTCCTTTCAG 57.442 50.000 0.00 0.00 0.00 3.02
1949 4160 2.050144 AGGTCTTGTGCTCCTTTCAGA 58.950 47.619 0.00 0.00 0.00 3.27
1950 4161 2.641815 AGGTCTTGTGCTCCTTTCAGAT 59.358 45.455 0.00 0.00 0.00 2.90
1951 4162 2.746362 GGTCTTGTGCTCCTTTCAGATG 59.254 50.000 0.00 0.00 0.00 2.90
1952 4163 2.161211 GTCTTGTGCTCCTTTCAGATGC 59.839 50.000 0.00 0.00 0.00 3.91
1953 4164 2.156917 CTTGTGCTCCTTTCAGATGCA 58.843 47.619 0.00 0.00 0.00 3.96
1954 4165 2.275134 TGTGCTCCTTTCAGATGCAA 57.725 45.000 0.00 0.00 35.34 4.08
1955 4166 2.585330 TGTGCTCCTTTCAGATGCAAA 58.415 42.857 0.00 0.00 35.34 3.68
1956 4167 2.957680 TGTGCTCCTTTCAGATGCAAAA 59.042 40.909 0.00 0.00 35.34 2.44
1957 4168 3.575256 TGTGCTCCTTTCAGATGCAAAAT 59.425 39.130 0.00 0.00 35.34 1.82
1958 4169 4.171754 GTGCTCCTTTCAGATGCAAAATC 58.828 43.478 0.00 0.00 35.34 2.17
1959 4170 3.194116 TGCTCCTTTCAGATGCAAAATCC 59.806 43.478 0.00 0.00 0.00 3.01
1960 4171 3.429960 GCTCCTTTCAGATGCAAAATCCC 60.430 47.826 0.00 0.00 0.00 3.85
1961 4172 3.099141 TCCTTTCAGATGCAAAATCCCC 58.901 45.455 0.00 0.00 0.00 4.81
1962 4173 2.833338 CCTTTCAGATGCAAAATCCCCA 59.167 45.455 0.00 0.00 0.00 4.96
1963 4174 3.118884 CCTTTCAGATGCAAAATCCCCAG 60.119 47.826 0.00 0.00 0.00 4.45
1964 4175 3.454719 TTCAGATGCAAAATCCCCAGA 57.545 42.857 0.00 0.00 0.00 3.86
1965 4176 3.454719 TCAGATGCAAAATCCCCAGAA 57.545 42.857 0.00 0.00 0.00 3.02
1966 4177 3.091545 TCAGATGCAAAATCCCCAGAAC 58.908 45.455 0.00 0.00 0.00 3.01
1967 4178 2.827322 CAGATGCAAAATCCCCAGAACA 59.173 45.455 0.00 0.00 0.00 3.18
1968 4179 3.094572 AGATGCAAAATCCCCAGAACAG 58.905 45.455 0.00 0.00 0.00 3.16
1969 4180 0.968405 TGCAAAATCCCCAGAACAGC 59.032 50.000 0.00 0.00 0.00 4.40
1970 4181 0.968405 GCAAAATCCCCAGAACAGCA 59.032 50.000 0.00 0.00 0.00 4.41
1971 4182 1.344114 GCAAAATCCCCAGAACAGCAA 59.656 47.619 0.00 0.00 0.00 3.91
1972 4183 2.611224 GCAAAATCCCCAGAACAGCAAG 60.611 50.000 0.00 0.00 0.00 4.01
1973 4184 1.928868 AAATCCCCAGAACAGCAAGG 58.071 50.000 0.00 0.00 0.00 3.61
1974 4185 0.779997 AATCCCCAGAACAGCAAGGT 59.220 50.000 0.00 0.00 0.00 3.50
1975 4186 1.668826 ATCCCCAGAACAGCAAGGTA 58.331 50.000 0.00 0.00 0.00 3.08
1976 4187 1.668826 TCCCCAGAACAGCAAGGTAT 58.331 50.000 0.00 0.00 0.00 2.73
1995 4206 6.231211 AGGTATGAGTCCTAACAACAAGTTG 58.769 40.000 11.16 11.16 41.50 3.16
2003 4214 8.974060 AGTCCTAACAACAAGTTGAATTAGAA 57.026 30.769 18.90 0.00 42.93 2.10
2020 4231 8.545420 TGAATTAGAAGTGTCAGTTACGAAAAC 58.455 33.333 0.00 0.00 0.00 2.43
2066 4290 4.333926 GGCACAGGATGAAGTTCTTGATAC 59.666 45.833 4.17 0.00 39.69 2.24
2068 4292 5.064452 GCACAGGATGAAGTTCTTGATACTG 59.936 44.000 18.02 18.02 39.69 2.74
2072 4296 7.039011 ACAGGATGAAGTTCTTGATACTGTGTA 60.039 37.037 22.31 0.00 39.69 2.90
2075 4299 7.981789 GGATGAAGTTCTTGATACTGTGTATCA 59.018 37.037 14.21 14.21 32.63 2.15
2076 4300 9.539825 GATGAAGTTCTTGATACTGTGTATCAT 57.460 33.333 17.60 5.45 34.34 2.45
2079 4303 7.667575 AGTTCTTGATACTGTGTATCATCCT 57.332 36.000 17.60 10.26 34.34 3.24
2084 4308 8.807118 TCTTGATACTGTGTATCATCCTTATCC 58.193 37.037 17.60 0.00 34.34 2.59
2086 4310 8.354711 TGATACTGTGTATCATCCTTATCCTC 57.645 38.462 14.21 0.00 0.00 3.71
2128 4434 3.430042 ACTCGTACAGTAGTCCAGGAA 57.570 47.619 0.00 0.00 31.37 3.36
2227 4533 3.879427 TGACGTGCTCAAATAAAAACCG 58.121 40.909 0.00 0.00 0.00 4.44
2268 4574 3.199946 AGCTGGAATCGTCTCCCAATTTA 59.800 43.478 0.00 0.00 34.22 1.40
2301 4607 5.220681 GGATAAGTGCTAGCAGCTTACAAAC 60.221 44.000 27.30 20.88 42.97 2.93
2496 4808 6.769512 TCCCTTGAATATGTAGGAATACTGC 58.230 40.000 0.00 0.00 0.00 4.40
2514 4826 0.023858 GCGTCAAGAAGAACGATCGC 59.976 55.000 16.60 0.00 36.06 4.58
2585 4897 2.881734 TCAGATGTATCCTCTCCGCAT 58.118 47.619 0.00 0.00 0.00 4.73
2839 5166 7.933215 ACCAAAGTATAGTTATGGTTTGACC 57.067 36.000 15.67 0.00 41.47 4.02
3027 5359 5.222631 CCTCCAACATGTTAAGCAGAAAAC 58.777 41.667 11.53 0.00 0.00 2.43
3244 5779 0.986527 ATCTGACATGTGGGCAGTCA 59.013 50.000 1.15 0.00 39.74 3.41
3290 5825 4.202326 ACAACAGGTTACGATTTCTGACCT 60.202 41.667 0.00 0.00 41.23 3.85
3301 5836 4.818546 CGATTTCTGACCTATCCTTTGCAT 59.181 41.667 0.00 0.00 0.00 3.96
3308 5843 4.202398 TGACCTATCCTTTGCATGAGATCC 60.202 45.833 0.00 0.00 0.00 3.36
3324 6026 8.180267 GCATGAGATCCTAAATACATTGCATAC 58.820 37.037 0.00 0.00 0.00 2.39
3382 6084 2.782192 GCTGTACTACGTAGCATTCACG 59.218 50.000 22.40 6.05 44.80 4.35
3412 6114 4.386049 GCCATTGGATTAATCGTCTACTCG 59.614 45.833 6.95 0.00 0.00 4.18
3504 6228 8.506168 TGTAATGTTTGAAGTGAGAGTTCTTT 57.494 30.769 0.00 0.00 0.00 2.52
3515 6239 3.131223 TGAGAGTTCTTTAGCCGATGGAG 59.869 47.826 0.00 0.00 0.00 3.86
3644 6368 4.040755 AGCTCATGGTATCTGTTAGGGTT 58.959 43.478 0.00 0.00 0.00 4.11
3725 6455 8.092687 AGCAGAAAATGTGCAGAGAATAAAATT 58.907 29.630 2.24 0.00 43.82 1.82
3928 6680 5.015178 ACAGACAAAATATGGAGAGGGGAAA 59.985 40.000 0.00 0.00 0.00 3.13
4087 6840 7.307632 CCTGAAAATAGTCTGAACAACAGTGAG 60.308 40.741 0.00 0.00 45.86 3.51
4149 6902 5.128919 AGAAGACAGAGAAAATGCAACACT 58.871 37.500 0.00 0.00 0.00 3.55
4226 6981 4.123497 TCATACAAACTGGTCATCTCCG 57.877 45.455 0.00 0.00 0.00 4.63
4353 7110 5.596268 CAGCGCTGCTTTCATTATATACA 57.404 39.130 26.68 0.00 36.40 2.29
4354 7111 5.377358 CAGCGCTGCTTTCATTATATACAC 58.623 41.667 26.68 0.00 36.40 2.90
4355 7112 4.452455 AGCGCTGCTTTCATTATATACACC 59.548 41.667 10.39 0.00 33.89 4.16
4356 7113 4.452455 GCGCTGCTTTCATTATATACACCT 59.548 41.667 0.00 0.00 0.00 4.00
4357 7114 5.389935 GCGCTGCTTTCATTATATACACCTC 60.390 44.000 0.00 0.00 0.00 3.85
4358 7115 5.120830 CGCTGCTTTCATTATATACACCTCC 59.879 44.000 0.00 0.00 0.00 4.30
4359 7116 5.120830 GCTGCTTTCATTATATACACCTCCG 59.879 44.000 0.00 0.00 0.00 4.63
4360 7117 4.994852 TGCTTTCATTATATACACCTCCGC 59.005 41.667 0.00 0.00 0.00 5.54
4361 7118 4.392138 GCTTTCATTATATACACCTCCGCC 59.608 45.833 0.00 0.00 0.00 6.13
4362 7119 5.794894 CTTTCATTATATACACCTCCGCCT 58.205 41.667 0.00 0.00 0.00 5.52
4363 7120 5.401531 TTCATTATATACACCTCCGCCTC 57.598 43.478 0.00 0.00 0.00 4.70
4364 7121 4.673968 TCATTATATACACCTCCGCCTCT 58.326 43.478 0.00 0.00 0.00 3.69
4365 7122 5.823312 TCATTATATACACCTCCGCCTCTA 58.177 41.667 0.00 0.00 0.00 2.43
4366 7123 6.432581 TCATTATATACACCTCCGCCTCTAT 58.567 40.000 0.00 0.00 0.00 1.98
4367 7124 6.546403 TCATTATATACACCTCCGCCTCTATC 59.454 42.308 0.00 0.00 0.00 2.08
4368 7125 2.677542 ATACACCTCCGCCTCTATCA 57.322 50.000 0.00 0.00 0.00 2.15
4384 7141 7.093727 CGCCTCTATCATAAGGGAGAAGAAATA 60.094 40.741 0.00 0.00 32.98 1.40
4450 7207 3.312697 GCTAAAGGCTAATCCAGGAAACG 59.687 47.826 0.00 0.00 38.06 3.60
4513 7270 3.898123 ACTCTGAGTAGCTCCTTTCAACA 59.102 43.478 8.91 0.00 0.00 3.33
4588 7345 1.768870 AGTAATAGCGCACCCCTGATT 59.231 47.619 11.47 0.00 0.00 2.57
4590 7347 0.546122 AATAGCGCACCCCTGATTCA 59.454 50.000 11.47 0.00 0.00 2.57
4606 7363 1.852157 TTCAGGCGCTTCCCCATTCT 61.852 55.000 7.64 0.00 34.51 2.40
4623 7380 4.503817 CCATTCTGACAGTTCTTCCTCACA 60.504 45.833 1.59 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.326789 CACGCATATCACTGAAAAGAAATTTGT 59.673 33.333 0.00 0.00 0.00 2.83
2 3 7.201376 CCACGCATATCACTGAAAAGAAATTTG 60.201 37.037 0.00 0.00 0.00 2.32
3 4 6.808212 CCACGCATATCACTGAAAAGAAATTT 59.192 34.615 0.00 0.00 0.00 1.82
6 7 4.155826 CCCACGCATATCACTGAAAAGAAA 59.844 41.667 0.00 0.00 0.00 2.52
7 8 3.689161 CCCACGCATATCACTGAAAAGAA 59.311 43.478 0.00 0.00 0.00 2.52
8 9 3.270027 CCCACGCATATCACTGAAAAGA 58.730 45.455 0.00 0.00 0.00 2.52
9 10 3.009723 ACCCACGCATATCACTGAAAAG 58.990 45.455 0.00 0.00 0.00 2.27
10 11 3.006940 GACCCACGCATATCACTGAAAA 58.993 45.455 0.00 0.00 0.00 2.29
11 12 2.236146 AGACCCACGCATATCACTGAAA 59.764 45.455 0.00 0.00 0.00 2.69
12 13 1.831106 AGACCCACGCATATCACTGAA 59.169 47.619 0.00 0.00 0.00 3.02
13 14 1.485124 AGACCCACGCATATCACTGA 58.515 50.000 0.00 0.00 0.00 3.41
14 15 1.935873 CAAGACCCACGCATATCACTG 59.064 52.381 0.00 0.00 0.00 3.66
15 16 1.134401 CCAAGACCCACGCATATCACT 60.134 52.381 0.00 0.00 0.00 3.41
16 17 1.299541 CCAAGACCCACGCATATCAC 58.700 55.000 0.00 0.00 0.00 3.06
17 18 0.180171 CCCAAGACCCACGCATATCA 59.820 55.000 0.00 0.00 0.00 2.15
18 19 0.535102 CCCCAAGACCCACGCATATC 60.535 60.000 0.00 0.00 0.00 1.63
19 20 1.279025 ACCCCAAGACCCACGCATAT 61.279 55.000 0.00 0.00 0.00 1.78
20 21 0.618107 TACCCCAAGACCCACGCATA 60.618 55.000 0.00 0.00 0.00 3.14
21 22 1.910580 CTACCCCAAGACCCACGCAT 61.911 60.000 0.00 0.00 0.00 4.73
22 23 2.527123 TACCCCAAGACCCACGCA 60.527 61.111 0.00 0.00 0.00 5.24
23 24 2.267961 CTACCCCAAGACCCACGC 59.732 66.667 0.00 0.00 0.00 5.34
24 25 2.267961 GCTACCCCAAGACCCACG 59.732 66.667 0.00 0.00 0.00 4.94
25 26 2.228480 TGGCTACCCCAAGACCCAC 61.228 63.158 0.00 0.00 41.82 4.61
26 27 2.208640 TGGCTACCCCAAGACCCA 59.791 61.111 0.00 0.00 41.82 4.51
33 34 3.376078 GTCGACGTGGCTACCCCA 61.376 66.667 0.00 0.00 42.79 4.96
34 35 4.139234 GGTCGACGTGGCTACCCC 62.139 72.222 9.92 0.00 0.00 4.95
35 36 4.487412 CGGTCGACGTGGCTACCC 62.487 72.222 9.92 0.00 37.93 3.69
36 37 4.487412 CCGGTCGACGTGGCTACC 62.487 72.222 9.92 0.00 42.24 3.18
37 38 4.487412 CCCGGTCGACGTGGCTAC 62.487 72.222 17.50 0.00 42.24 3.58
38 39 4.720902 TCCCGGTCGACGTGGCTA 62.721 66.667 17.50 7.15 42.24 3.93
52 53 1.452108 CCACGAAGAAGGGCATCCC 60.452 63.158 0.00 0.00 45.90 3.85
53 54 0.744771 GTCCACGAAGAAGGGCATCC 60.745 60.000 0.00 0.00 31.89 3.51
54 55 1.084370 CGTCCACGAAGAAGGGCATC 61.084 60.000 0.00 0.00 43.02 3.91
55 56 1.079127 CGTCCACGAAGAAGGGCAT 60.079 57.895 0.00 0.00 43.02 4.40
56 57 2.342279 CGTCCACGAAGAAGGGCA 59.658 61.111 0.00 0.00 43.02 5.36
57 58 3.119096 GCGTCCACGAAGAAGGGC 61.119 66.667 2.58 0.00 43.02 5.19
58 59 2.809601 CGCGTCCACGAAGAAGGG 60.810 66.667 2.58 0.00 43.02 3.95
59 60 1.663702 AACGCGTCCACGAAGAAGG 60.664 57.895 14.44 0.00 43.02 3.46
60 61 1.213094 ACAACGCGTCCACGAAGAAG 61.213 55.000 14.44 0.00 43.02 2.85
61 62 0.030504 TACAACGCGTCCACGAAGAA 59.969 50.000 14.44 0.00 43.02 2.52
62 63 0.030504 TTACAACGCGTCCACGAAGA 59.969 50.000 14.44 0.00 43.02 2.87
63 64 0.160182 GTTACAACGCGTCCACGAAG 59.840 55.000 14.44 0.00 43.02 3.79
64 65 0.527169 TGTTACAACGCGTCCACGAA 60.527 50.000 14.44 0.00 43.02 3.85
65 66 0.935831 CTGTTACAACGCGTCCACGA 60.936 55.000 14.44 0.00 43.02 4.35
66 67 1.210545 ACTGTTACAACGCGTCCACG 61.211 55.000 14.44 4.08 43.27 4.94
67 68 0.932399 AACTGTTACAACGCGTCCAC 59.068 50.000 14.44 7.69 0.00 4.02
68 69 1.654317 AAACTGTTACAACGCGTCCA 58.346 45.000 14.44 3.73 0.00 4.02
69 70 2.030701 TGAAAACTGTTACAACGCGTCC 59.969 45.455 14.44 0.00 0.00 4.79
70 71 3.307339 TGAAAACTGTTACAACGCGTC 57.693 42.857 14.44 0.00 0.00 5.19
71 72 3.303526 GGATGAAAACTGTTACAACGCGT 60.304 43.478 5.58 5.58 0.00 6.01
72 73 3.223157 GGATGAAAACTGTTACAACGCG 58.777 45.455 3.53 3.53 0.00 6.01
73 74 3.223157 CGGATGAAAACTGTTACAACGC 58.777 45.455 0.00 0.00 0.00 4.84
74 75 3.364565 CCCGGATGAAAACTGTTACAACG 60.365 47.826 0.73 7.15 0.00 4.10
75 76 3.566742 ACCCGGATGAAAACTGTTACAAC 59.433 43.478 0.73 0.00 0.00 3.32
76 77 3.822940 ACCCGGATGAAAACTGTTACAA 58.177 40.909 0.73 0.00 0.00 2.41
77 78 3.495434 ACCCGGATGAAAACTGTTACA 57.505 42.857 0.73 0.00 0.00 2.41
78 79 4.841443 AAACCCGGATGAAAACTGTTAC 57.159 40.909 0.73 0.00 0.00 2.50
79 80 5.855740 AAAAACCCGGATGAAAACTGTTA 57.144 34.783 0.73 0.00 0.00 2.41
80 81 4.746535 AAAAACCCGGATGAAAACTGTT 57.253 36.364 0.73 0.00 0.00 3.16
98 99 6.927294 AAATTGCCCGTTAATTGACAAAAA 57.073 29.167 0.95 0.00 0.00 1.94
99 100 6.292381 CGAAAATTGCCCGTTAATTGACAAAA 60.292 34.615 0.95 0.00 0.00 2.44
100 101 5.175856 CGAAAATTGCCCGTTAATTGACAAA 59.824 36.000 0.95 0.00 0.00 2.83
101 102 4.681942 CGAAAATTGCCCGTTAATTGACAA 59.318 37.500 0.95 0.00 0.00 3.18
102 103 4.230657 CGAAAATTGCCCGTTAATTGACA 58.769 39.130 0.95 0.00 0.00 3.58
103 104 4.231439 ACGAAAATTGCCCGTTAATTGAC 58.769 39.130 0.00 0.00 32.03 3.18
104 105 4.216687 AGACGAAAATTGCCCGTTAATTGA 59.783 37.500 0.00 0.00 36.60 2.57
105 106 4.481463 AGACGAAAATTGCCCGTTAATTG 58.519 39.130 0.00 0.00 36.60 2.32
106 107 4.776795 AGACGAAAATTGCCCGTTAATT 57.223 36.364 0.00 0.00 36.60 1.40
107 108 5.008316 GGATAGACGAAAATTGCCCGTTAAT 59.992 40.000 0.00 0.00 36.60 1.40
108 109 4.333372 GGATAGACGAAAATTGCCCGTTAA 59.667 41.667 0.00 0.00 36.60 2.01
109 110 3.872771 GGATAGACGAAAATTGCCCGTTA 59.127 43.478 0.00 0.00 36.60 3.18
110 111 2.681344 GGATAGACGAAAATTGCCCGTT 59.319 45.455 0.00 0.00 36.60 4.44
111 112 2.093128 AGGATAGACGAAAATTGCCCGT 60.093 45.455 0.00 0.00 39.41 5.28
112 113 2.561569 AGGATAGACGAAAATTGCCCG 58.438 47.619 0.00 0.00 0.00 6.13
113 114 4.983671 AAAGGATAGACGAAAATTGCCC 57.016 40.909 0.00 0.00 0.00 5.36
114 115 8.926715 ATTAAAAAGGATAGACGAAAATTGCC 57.073 30.769 0.00 0.00 0.00 4.52
120 121 8.667463 CCGGTTTATTAAAAAGGATAGACGAAA 58.333 33.333 0.00 0.00 30.31 3.46
121 122 8.040132 TCCGGTTTATTAAAAAGGATAGACGAA 58.960 33.333 0.00 0.00 32.12 3.85
122 123 7.555087 TCCGGTTTATTAAAAAGGATAGACGA 58.445 34.615 0.00 0.00 32.12 4.20
123 124 7.493645 ACTCCGGTTTATTAAAAAGGATAGACG 59.506 37.037 0.00 5.63 34.85 4.18
124 125 8.728337 ACTCCGGTTTATTAAAAAGGATAGAC 57.272 34.615 0.00 0.00 34.85 2.59
125 126 9.387257 GAACTCCGGTTTATTAAAAAGGATAGA 57.613 33.333 0.00 0.00 34.85 1.98
126 127 9.392259 AGAACTCCGGTTTATTAAAAAGGATAG 57.608 33.333 0.00 6.60 34.85 2.08
128 129 9.743581 TTAGAACTCCGGTTTATTAAAAAGGAT 57.256 29.630 0.00 2.48 34.85 3.24
129 130 9.223099 CTTAGAACTCCGGTTTATTAAAAAGGA 57.777 33.333 0.00 11.21 35.58 3.36
130 131 8.456471 CCTTAGAACTCCGGTTTATTAAAAAGG 58.544 37.037 0.00 1.81 35.58 3.11
131 132 9.223099 TCCTTAGAACTCCGGTTTATTAAAAAG 57.777 33.333 0.00 0.00 35.58 2.27
132 133 9.002600 GTCCTTAGAACTCCGGTTTATTAAAAA 57.997 33.333 0.00 0.00 35.58 1.94
133 134 8.156165 TGTCCTTAGAACTCCGGTTTATTAAAA 58.844 33.333 0.00 0.00 35.58 1.52
134 135 7.678837 TGTCCTTAGAACTCCGGTTTATTAAA 58.321 34.615 0.00 0.00 35.58 1.52
135 136 7.243604 TGTCCTTAGAACTCCGGTTTATTAA 57.756 36.000 0.00 0.00 35.58 1.40
136 137 6.855763 TGTCCTTAGAACTCCGGTTTATTA 57.144 37.500 0.00 0.00 35.58 0.98
137 138 5.750352 TGTCCTTAGAACTCCGGTTTATT 57.250 39.130 0.00 0.00 35.58 1.40
138 139 5.424252 TCATGTCCTTAGAACTCCGGTTTAT 59.576 40.000 0.00 0.00 35.58 1.40
139 140 4.773674 TCATGTCCTTAGAACTCCGGTTTA 59.226 41.667 0.00 0.00 35.58 2.01
140 141 3.581332 TCATGTCCTTAGAACTCCGGTTT 59.419 43.478 0.00 0.00 35.58 3.27
141 142 3.056035 GTCATGTCCTTAGAACTCCGGTT 60.056 47.826 0.00 0.00 38.52 4.44
142 143 2.496470 GTCATGTCCTTAGAACTCCGGT 59.504 50.000 0.00 0.00 0.00 5.28
143 144 2.761208 AGTCATGTCCTTAGAACTCCGG 59.239 50.000 0.00 0.00 0.00 5.14
144 145 4.457834 AAGTCATGTCCTTAGAACTCCG 57.542 45.455 0.00 0.00 0.00 4.63
145 146 7.171630 TCTTAAGTCATGTCCTTAGAACTCC 57.828 40.000 1.63 0.00 0.00 3.85
146 147 9.490379 TTTTCTTAAGTCATGTCCTTAGAACTC 57.510 33.333 1.63 0.00 0.00 3.01
147 148 9.495572 CTTTTCTTAAGTCATGTCCTTAGAACT 57.504 33.333 1.63 0.00 0.00 3.01
148 149 9.490379 TCTTTTCTTAAGTCATGTCCTTAGAAC 57.510 33.333 1.63 0.00 0.00 3.01
154 155 8.797438 GGATTTTCTTTTCTTAAGTCATGTCCT 58.203 33.333 1.63 0.00 0.00 3.85
155 156 8.029522 GGGATTTTCTTTTCTTAAGTCATGTCC 58.970 37.037 1.63 1.02 0.00 4.02
156 157 8.797438 AGGGATTTTCTTTTCTTAAGTCATGTC 58.203 33.333 1.63 0.00 0.00 3.06
157 158 8.712228 AGGGATTTTCTTTTCTTAAGTCATGT 57.288 30.769 1.63 0.00 0.00 3.21
158 159 9.018582 AGAGGGATTTTCTTTTCTTAAGTCATG 57.981 33.333 1.63 0.00 0.00 3.07
159 160 9.237187 GAGAGGGATTTTCTTTTCTTAAGTCAT 57.763 33.333 1.63 0.00 0.00 3.06
160 161 8.217799 TGAGAGGGATTTTCTTTTCTTAAGTCA 58.782 33.333 1.63 0.00 0.00 3.41
161 162 8.622948 TGAGAGGGATTTTCTTTTCTTAAGTC 57.377 34.615 1.63 0.00 0.00 3.01
162 163 9.237187 GATGAGAGGGATTTTCTTTTCTTAAGT 57.763 33.333 1.63 0.00 0.00 2.24
163 164 8.681806 GGATGAGAGGGATTTTCTTTTCTTAAG 58.318 37.037 0.00 0.00 0.00 1.85
164 165 8.170061 TGGATGAGAGGGATTTTCTTTTCTTAA 58.830 33.333 0.00 0.00 0.00 1.85
165 166 7.698912 TGGATGAGAGGGATTTTCTTTTCTTA 58.301 34.615 0.00 0.00 0.00 2.10
166 167 6.555711 TGGATGAGAGGGATTTTCTTTTCTT 58.444 36.000 0.00 0.00 0.00 2.52
167 168 6.144845 TGGATGAGAGGGATTTTCTTTTCT 57.855 37.500 0.00 0.00 0.00 2.52
168 169 6.604795 TGATGGATGAGAGGGATTTTCTTTTC 59.395 38.462 0.00 0.00 0.00 2.29
169 170 6.496743 TGATGGATGAGAGGGATTTTCTTTT 58.503 36.000 0.00 0.00 0.00 2.27
170 171 6.083487 TGATGGATGAGAGGGATTTTCTTT 57.917 37.500 0.00 0.00 0.00 2.52
171 172 5.722172 TGATGGATGAGAGGGATTTTCTT 57.278 39.130 0.00 0.00 0.00 2.52
172 173 5.632118 CATGATGGATGAGAGGGATTTTCT 58.368 41.667 0.00 0.00 33.31 2.52
173 174 4.217983 GCATGATGGATGAGAGGGATTTTC 59.782 45.833 0.00 0.00 33.31 2.29
174 175 4.150359 GCATGATGGATGAGAGGGATTTT 58.850 43.478 0.00 0.00 33.31 1.82
175 176 3.499926 GGCATGATGGATGAGAGGGATTT 60.500 47.826 0.00 0.00 33.31 2.17
176 177 2.041350 GGCATGATGGATGAGAGGGATT 59.959 50.000 0.00 0.00 33.31 3.01
177 178 1.634459 GGCATGATGGATGAGAGGGAT 59.366 52.381 0.00 0.00 33.31 3.85
178 179 1.062364 GGCATGATGGATGAGAGGGA 58.938 55.000 0.00 0.00 33.31 4.20
179 180 0.769247 TGGCATGATGGATGAGAGGG 59.231 55.000 0.00 0.00 33.31 4.30
180 181 2.437413 CATGGCATGATGGATGAGAGG 58.563 52.381 22.91 0.00 33.31 3.69
181 182 2.224793 ACCATGGCATGATGGATGAGAG 60.225 50.000 28.43 9.96 45.24 3.20
182 183 1.778484 ACCATGGCATGATGGATGAGA 59.222 47.619 28.43 0.00 45.24 3.27
183 184 2.287977 ACCATGGCATGATGGATGAG 57.712 50.000 28.43 11.39 45.24 2.90
184 185 2.224843 GGTACCATGGCATGATGGATGA 60.225 50.000 28.43 2.64 45.24 2.92
185 186 2.165167 GGTACCATGGCATGATGGATG 58.835 52.381 28.43 12.82 45.24 3.51
186 187 1.782140 TGGTACCATGGCATGATGGAT 59.218 47.619 28.43 10.56 45.24 3.41
187 188 1.220703 TGGTACCATGGCATGATGGA 58.779 50.000 28.43 6.81 45.24 3.41
198 199 1.143684 GGGCTCATCACATGGTACCAT 59.856 52.381 22.23 22.23 37.08 3.55
199 200 0.546122 GGGCTCATCACATGGTACCA 59.454 55.000 18.99 18.99 0.00 3.25
200 201 0.546122 TGGGCTCATCACATGGTACC 59.454 55.000 4.43 4.43 0.00 3.34
201 202 2.498167 GATGGGCTCATCACATGGTAC 58.502 52.381 22.02 0.00 46.74 3.34
202 203 2.936919 GATGGGCTCATCACATGGTA 57.063 50.000 22.02 0.00 46.74 3.25
203 204 3.815133 GATGGGCTCATCACATGGT 57.185 52.632 22.02 0.00 46.74 3.55
216 217 1.895707 GATGCTTGGAGCCGATGGG 60.896 63.158 0.00 0.00 41.51 4.00
217 218 0.749091 TTGATGCTTGGAGCCGATGG 60.749 55.000 0.00 0.00 41.51 3.51
218 219 1.097232 TTTGATGCTTGGAGCCGATG 58.903 50.000 0.00 0.00 41.51 3.84
219 220 2.062971 ATTTGATGCTTGGAGCCGAT 57.937 45.000 0.00 0.00 41.51 4.18
220 221 1.473677 CAATTTGATGCTTGGAGCCGA 59.526 47.619 0.00 0.00 41.51 5.54
221 222 1.470285 CCAATTTGATGCTTGGAGCCG 60.470 52.381 0.00 0.00 43.83 5.52
222 223 1.741394 GCCAATTTGATGCTTGGAGCC 60.741 52.381 4.43 0.00 43.83 4.70
223 224 1.066716 TGCCAATTTGATGCTTGGAGC 60.067 47.619 4.43 0.00 43.83 4.70
224 225 3.322211 TTGCCAATTTGATGCTTGGAG 57.678 42.857 4.43 0.00 43.83 3.86
225 226 3.666274 CTTTGCCAATTTGATGCTTGGA 58.334 40.909 4.43 0.00 43.83 3.53
226 227 2.160813 GCTTTGCCAATTTGATGCTTGG 59.839 45.455 0.00 0.00 43.93 3.61
227 228 2.159761 CGCTTTGCCAATTTGATGCTTG 60.160 45.455 0.00 0.00 0.00 4.01
228 229 2.070783 CGCTTTGCCAATTTGATGCTT 58.929 42.857 0.00 0.00 0.00 3.91
229 230 1.673626 CCGCTTTGCCAATTTGATGCT 60.674 47.619 0.00 0.00 0.00 3.79
230 231 0.722848 CCGCTTTGCCAATTTGATGC 59.277 50.000 0.00 0.00 0.00 3.91
231 232 1.727880 CACCGCTTTGCCAATTTGATG 59.272 47.619 0.00 0.00 0.00 3.07
232 233 1.940752 GCACCGCTTTGCCAATTTGAT 60.941 47.619 0.00 0.00 36.42 2.57
233 234 0.599728 GCACCGCTTTGCCAATTTGA 60.600 50.000 0.00 0.00 36.42 2.69
234 235 0.879400 TGCACCGCTTTGCCAATTTG 60.879 50.000 4.15 0.00 42.25 2.32
235 236 0.879839 GTGCACCGCTTTGCCAATTT 60.880 50.000 5.22 0.00 42.25 1.82
236 237 1.300853 GTGCACCGCTTTGCCAATT 60.301 52.632 5.22 0.00 42.25 2.32
237 238 2.025767 TTGTGCACCGCTTTGCCAAT 62.026 50.000 15.69 0.00 42.25 3.16
238 239 2.230994 TTTGTGCACCGCTTTGCCAA 62.231 50.000 15.69 0.00 42.25 4.52
239 240 2.230994 TTTTGTGCACCGCTTTGCCA 62.231 50.000 15.69 0.00 42.25 4.92
240 241 1.086634 TTTTTGTGCACCGCTTTGCC 61.087 50.000 15.69 0.00 42.25 4.52
241 242 0.026156 GTTTTTGTGCACCGCTTTGC 59.974 50.000 15.69 0.00 43.31 3.68
242 243 1.354040 TGTTTTTGTGCACCGCTTTG 58.646 45.000 15.69 0.00 0.00 2.77
243 244 2.086054 TTGTTTTTGTGCACCGCTTT 57.914 40.000 15.69 0.00 0.00 3.51
244 245 2.086054 TTTGTTTTTGTGCACCGCTT 57.914 40.000 15.69 0.00 0.00 4.68
245 246 2.086054 TTTTGTTTTTGTGCACCGCT 57.914 40.000 15.69 0.00 0.00 5.52
246 247 2.500888 GTTTTTGTTTTTGTGCACCGC 58.499 42.857 15.69 0.36 0.00 5.68
247 248 2.155924 ACGTTTTTGTTTTTGTGCACCG 59.844 40.909 15.69 8.25 0.00 4.94
248 249 3.059529 ACACGTTTTTGTTTTTGTGCACC 60.060 39.130 15.69 0.00 0.00 5.01
249 250 4.121961 ACACGTTTTTGTTTTTGTGCAC 57.878 36.364 10.75 10.75 0.00 4.57
250 251 3.121328 CGACACGTTTTTGTTTTTGTGCA 60.121 39.130 0.00 0.00 0.00 4.57
251 252 3.121295 ACGACACGTTTTTGTTTTTGTGC 60.121 39.130 0.00 0.00 36.35 4.57
252 253 4.085517 ACACGACACGTTTTTGTTTTTGTG 60.086 37.500 0.00 0.00 38.32 3.33
253 254 4.043073 ACACGACACGTTTTTGTTTTTGT 58.957 34.783 0.00 0.00 38.32 2.83
254 255 4.616747 ACACGACACGTTTTTGTTTTTG 57.383 36.364 0.00 0.00 38.32 2.44
255 256 4.148522 GGAACACGACACGTTTTTGTTTTT 59.851 37.500 4.67 0.00 38.32 1.94
256 257 3.669588 GGAACACGACACGTTTTTGTTTT 59.330 39.130 4.67 0.00 38.32 2.43
257 258 3.236005 GGAACACGACACGTTTTTGTTT 58.764 40.909 4.67 0.00 38.32 2.83
258 259 2.853963 GGAACACGACACGTTTTTGTT 58.146 42.857 3.14 3.14 38.32 2.83
259 260 2.530832 GGAACACGACACGTTTTTGT 57.469 45.000 0.00 0.00 38.32 2.83
272 273 2.476534 TTCCTACGGACGCGGAACAC 62.477 60.000 12.47 0.00 32.19 3.32
273 274 1.597797 ATTCCTACGGACGCGGAACA 61.598 55.000 12.47 0.00 39.43 3.18
274 275 0.459063 AATTCCTACGGACGCGGAAC 60.459 55.000 12.47 0.71 39.43 3.62
275 276 0.247185 AAATTCCTACGGACGCGGAA 59.753 50.000 12.47 15.25 40.75 4.30
276 277 0.247185 AAAATTCCTACGGACGCGGA 59.753 50.000 12.47 0.00 0.00 5.54
277 278 0.372334 CAAAATTCCTACGGACGCGG 59.628 55.000 12.47 0.00 0.00 6.46
278 279 1.073177 ACAAAATTCCTACGGACGCG 58.927 50.000 3.53 3.53 0.00 6.01
279 280 3.187842 AGAAACAAAATTCCTACGGACGC 59.812 43.478 0.00 0.00 0.00 5.19
280 281 5.352643 AAGAAACAAAATTCCTACGGACG 57.647 39.130 0.00 0.00 0.00 4.79
281 282 7.997107 AAAAAGAAACAAAATTCCTACGGAC 57.003 32.000 0.00 0.00 0.00 4.79
306 307 9.377312 CAGAAACAAAATTCCCAGTTCTAAAAA 57.623 29.630 0.00 0.00 0.00 1.94
307 308 8.754080 TCAGAAACAAAATTCCCAGTTCTAAAA 58.246 29.630 0.00 0.00 0.00 1.52
308 309 8.299990 TCAGAAACAAAATTCCCAGTTCTAAA 57.700 30.769 0.00 0.00 0.00 1.85
309 310 7.889873 TCAGAAACAAAATTCCCAGTTCTAA 57.110 32.000 0.00 0.00 0.00 2.10
310 311 7.889873 TTCAGAAACAAAATTCCCAGTTCTA 57.110 32.000 0.00 0.00 0.00 2.10
311 312 6.790232 TTCAGAAACAAAATTCCCAGTTCT 57.210 33.333 0.00 0.00 0.00 3.01
312 313 9.143631 CATATTCAGAAACAAAATTCCCAGTTC 57.856 33.333 0.00 0.00 0.00 3.01
313 314 8.869109 TCATATTCAGAAACAAAATTCCCAGTT 58.131 29.630 0.00 0.00 0.00 3.16
314 315 8.421249 TCATATTCAGAAACAAAATTCCCAGT 57.579 30.769 0.00 0.00 0.00 4.00
315 316 9.525409 GATCATATTCAGAAACAAAATTCCCAG 57.475 33.333 0.00 0.00 0.00 4.45
316 317 9.033711 TGATCATATTCAGAAACAAAATTCCCA 57.966 29.630 0.00 0.00 0.00 4.37
317 318 9.525409 CTGATCATATTCAGAAACAAAATTCCC 57.475 33.333 0.00 0.00 44.88 3.97
335 336 1.629043 GGGTACCGGCTCTGATCATA 58.371 55.000 0.00 0.00 40.86 2.15
349 350 1.127951 CACTTGCGATGAAACGGGTAC 59.872 52.381 0.00 0.00 0.00 3.34
350 351 1.434555 CACTTGCGATGAAACGGGTA 58.565 50.000 0.00 0.00 0.00 3.69
352 353 1.154225 GCACTTGCGATGAAACGGG 60.154 57.895 0.00 0.00 0.00 5.28
353 354 1.154225 GGCACTTGCGATGAAACGG 60.154 57.895 0.00 0.00 43.26 4.44
355 356 1.154225 CGGGCACTTGCGATGAAAC 60.154 57.895 0.00 0.00 43.26 2.78
356 357 0.320858 TACGGGCACTTGCGATGAAA 60.321 50.000 0.00 0.00 43.26 2.69
357 358 1.017177 GTACGGGCACTTGCGATGAA 61.017 55.000 0.00 0.00 43.26 2.57
359 360 2.798501 CGTACGGGCACTTGCGATG 61.799 63.158 7.57 0.00 43.26 3.84
360 361 2.508439 CGTACGGGCACTTGCGAT 60.508 61.111 7.57 0.00 43.26 4.58
400 403 2.519175 CGGCGTGGCACGGTTATAC 61.519 63.158 37.33 21.20 42.82 1.47
485 519 1.302285 CTTGTGAGGCAGGCAGGAT 59.698 57.895 0.00 0.00 0.00 3.24
487 521 1.673665 GACTTGTGAGGCAGGCAGG 60.674 63.158 0.00 0.00 0.00 4.85
514 548 6.266786 TGATGATAGCTACACCTTCGGAAATA 59.733 38.462 0.00 0.00 0.00 1.40
522 556 5.297776 GTGCAATTGATGATAGCTACACCTT 59.702 40.000 10.34 0.00 0.00 3.50
523 557 4.818546 GTGCAATTGATGATAGCTACACCT 59.181 41.667 10.34 0.00 0.00 4.00
526 560 3.809279 CCGTGCAATTGATGATAGCTACA 59.191 43.478 10.34 0.00 0.00 2.74
532 566 3.118445 TCTGGTCCGTGCAATTGATGATA 60.118 43.478 10.34 0.00 0.00 2.15
537 571 0.396435 ACTCTGGTCCGTGCAATTGA 59.604 50.000 10.34 0.00 0.00 2.57
541 575 1.069090 GTGACTCTGGTCCGTGCAA 59.931 57.895 0.00 0.00 41.47 4.08
556 590 0.322726 CCAGGCCATGTCACATGTGA 60.323 55.000 24.56 24.56 37.24 3.58
557 591 1.940883 GCCAGGCCATGTCACATGTG 61.941 60.000 20.18 20.18 0.00 3.21
558 592 1.679977 GCCAGGCCATGTCACATGT 60.680 57.895 16.74 0.00 0.00 3.21
559 593 1.040893 ATGCCAGGCCATGTCACATG 61.041 55.000 11.18 11.18 0.00 3.21
563 598 0.032912 AATCATGCCAGGCCATGTCA 60.033 50.000 9.64 0.00 42.44 3.58
571 606 0.680921 AACGGACCAATCATGCCAGG 60.681 55.000 0.00 0.00 0.00 4.45
575 610 1.809207 CCCAACGGACCAATCATGC 59.191 57.895 0.00 0.00 0.00 4.06
669 705 9.787435 CTTGCAAATAGTACTACCCCATTATTA 57.213 33.333 4.31 0.00 0.00 0.98
671 707 8.041143 TCTTGCAAATAGTACTACCCCATTAT 57.959 34.615 4.31 0.00 0.00 1.28
678 720 5.041940 CGTCCTCTTGCAAATAGTACTACC 58.958 45.833 4.31 0.00 0.00 3.18
699 741 4.280929 TCATTGATTAGGTGATCGGATCGT 59.719 41.667 12.99 3.47 0.00 3.73
700 742 4.809673 TCATTGATTAGGTGATCGGATCG 58.190 43.478 12.99 0.00 0.00 3.69
751 795 9.722056 GATCGCTACATTGATTATGTTTTCTTT 57.278 29.630 0.00 0.00 45.19 2.52
909 953 4.154347 GGCCGGAGCAGAGGACTG 62.154 72.222 5.05 0.00 45.91 3.51
1143 1201 7.669722 GGGGAAATGATAGCTTGGATTGTTATA 59.330 37.037 0.00 0.00 0.00 0.98
1156 1214 1.133668 AGTGCTGGGGGAAATGATAGC 60.134 52.381 0.00 0.00 0.00 2.97
1157 1215 2.954318 CAAGTGCTGGGGGAAATGATAG 59.046 50.000 0.00 0.00 0.00 2.08
1223 1285 1.210722 TGGTGTGTTAACTCCTGCACA 59.789 47.619 7.22 0.00 40.09 4.57
1224 1286 1.602377 GTGGTGTGTTAACTCCTGCAC 59.398 52.381 7.22 7.91 40.09 4.57
1318 1423 0.038166 ATTTCATGCTCACCCGTGGT 59.962 50.000 0.00 0.00 35.62 4.16
1337 1450 6.446318 GCACAAGGTAAGTTTCATGATTGAA 58.554 36.000 8.09 0.00 40.09 2.69
1361 1474 0.234884 GGTCTGCGAAACTGAAACCG 59.765 55.000 0.00 0.00 0.00 4.44
1377 1490 1.135053 GGCGTAAAGAGTGAGGAGGTC 60.135 57.143 0.00 0.00 0.00 3.85
1642 1811 5.819379 CAGAAAGAATATCTTGTGCCTAGCA 59.181 40.000 0.00 0.00 36.71 3.49
1782 3990 6.313905 ACAGAGACTTTTAGTAATCGGCATTG 59.686 38.462 0.00 0.00 0.00 2.82
1801 4009 7.668469 TGTATCTTACTAGGTTTGTCACAGAGA 59.332 37.037 0.00 0.00 0.00 3.10
1802 4010 7.755822 GTGTATCTTACTAGGTTTGTCACAGAG 59.244 40.741 0.00 0.00 0.00 3.35
1803 4011 7.231925 TGTGTATCTTACTAGGTTTGTCACAGA 59.768 37.037 0.00 0.00 0.00 3.41
1804 4012 7.328737 GTGTGTATCTTACTAGGTTTGTCACAG 59.671 40.741 0.00 0.00 32.90 3.66
1805 4013 7.149973 GTGTGTATCTTACTAGGTTTGTCACA 58.850 38.462 0.00 0.00 0.00 3.58
1810 4021 6.931838 TCCTGTGTGTATCTTACTAGGTTTG 58.068 40.000 0.00 0.00 0.00 2.93
1893 4104 9.787435 CTCCTAGACTACTATGAAGAACTGTAT 57.213 37.037 0.00 0.00 0.00 2.29
1894 4105 8.990203 TCTCCTAGACTACTATGAAGAACTGTA 58.010 37.037 0.00 0.00 0.00 2.74
1895 4106 7.863722 TCTCCTAGACTACTATGAAGAACTGT 58.136 38.462 0.00 0.00 0.00 3.55
1896 4107 8.918202 ATCTCCTAGACTACTATGAAGAACTG 57.082 38.462 0.00 0.00 0.00 3.16
1897 4108 8.719596 TGATCTCCTAGACTACTATGAAGAACT 58.280 37.037 0.00 0.00 0.00 3.01
1898 4109 8.911918 TGATCTCCTAGACTACTATGAAGAAC 57.088 38.462 0.00 0.00 0.00 3.01
1899 4110 9.922477 TTTGATCTCCTAGACTACTATGAAGAA 57.078 33.333 0.00 0.00 0.00 2.52
1907 4118 9.138596 GACCTAAATTTGATCTCCTAGACTACT 57.861 37.037 0.00 0.00 0.00 2.57
1908 4119 9.138596 AGACCTAAATTTGATCTCCTAGACTAC 57.861 37.037 0.00 0.00 0.00 2.73
1909 4120 9.716556 AAGACCTAAATTTGATCTCCTAGACTA 57.283 33.333 0.00 0.00 0.00 2.59
1910 4121 8.482128 CAAGACCTAAATTTGATCTCCTAGACT 58.518 37.037 0.00 0.00 0.00 3.24
1911 4122 8.261522 ACAAGACCTAAATTTGATCTCCTAGAC 58.738 37.037 0.00 0.00 0.00 2.59
1912 4123 8.260818 CACAAGACCTAAATTTGATCTCCTAGA 58.739 37.037 0.00 0.00 0.00 2.43
1913 4124 7.011857 GCACAAGACCTAAATTTGATCTCCTAG 59.988 40.741 0.00 0.00 0.00 3.02
1914 4125 6.823689 GCACAAGACCTAAATTTGATCTCCTA 59.176 38.462 0.00 0.00 0.00 2.94
1915 4126 5.649831 GCACAAGACCTAAATTTGATCTCCT 59.350 40.000 0.00 0.00 0.00 3.69
1916 4127 5.649831 AGCACAAGACCTAAATTTGATCTCC 59.350 40.000 0.00 0.00 0.00 3.71
1917 4128 6.183360 GGAGCACAAGACCTAAATTTGATCTC 60.183 42.308 0.00 0.00 0.00 2.75
1918 4129 5.649831 GGAGCACAAGACCTAAATTTGATCT 59.350 40.000 0.00 0.00 0.00 2.75
1919 4130 5.649831 AGGAGCACAAGACCTAAATTTGATC 59.350 40.000 0.00 0.00 31.78 2.92
1920 4131 5.574188 AGGAGCACAAGACCTAAATTTGAT 58.426 37.500 0.00 0.00 31.78 2.57
1921 4132 4.985538 AGGAGCACAAGACCTAAATTTGA 58.014 39.130 0.00 0.00 31.78 2.69
1922 4133 5.712152 AAGGAGCACAAGACCTAAATTTG 57.288 39.130 0.00 0.00 33.34 2.32
1923 4134 5.833131 TGAAAGGAGCACAAGACCTAAATTT 59.167 36.000 0.00 0.00 33.34 1.82
1924 4135 5.385198 TGAAAGGAGCACAAGACCTAAATT 58.615 37.500 0.00 0.00 33.34 1.82
1925 4136 4.985538 TGAAAGGAGCACAAGACCTAAAT 58.014 39.130 0.00 0.00 33.34 1.40
1926 4137 4.102524 TCTGAAAGGAGCACAAGACCTAAA 59.897 41.667 0.00 0.00 33.34 1.85
1927 4138 3.646162 TCTGAAAGGAGCACAAGACCTAA 59.354 43.478 0.00 0.00 33.34 2.69
1928 4139 3.239449 TCTGAAAGGAGCACAAGACCTA 58.761 45.455 0.00 0.00 33.34 3.08
1929 4140 2.050144 TCTGAAAGGAGCACAAGACCT 58.950 47.619 0.00 0.00 35.36 3.85
1930 4141 2.550830 TCTGAAAGGAGCACAAGACC 57.449 50.000 0.00 0.00 0.00 3.85
1931 4142 2.161211 GCATCTGAAAGGAGCACAAGAC 59.839 50.000 0.00 0.00 34.90 3.01
1932 4143 2.224597 TGCATCTGAAAGGAGCACAAGA 60.225 45.455 0.00 0.00 38.76 3.02
1933 4144 2.156917 TGCATCTGAAAGGAGCACAAG 58.843 47.619 0.00 0.00 38.76 3.16
1934 4145 2.275134 TGCATCTGAAAGGAGCACAA 57.725 45.000 0.00 0.00 38.76 3.33
1935 4146 2.275134 TTGCATCTGAAAGGAGCACA 57.725 45.000 0.00 0.00 42.17 4.57
1936 4147 3.648339 TTTTGCATCTGAAAGGAGCAC 57.352 42.857 0.00 0.00 42.17 4.40
1937 4148 3.194116 GGATTTTGCATCTGAAAGGAGCA 59.806 43.478 0.00 0.00 41.12 4.26
1938 4149 3.429960 GGGATTTTGCATCTGAAAGGAGC 60.430 47.826 0.00 0.00 35.25 4.70
1939 4150 3.131755 GGGGATTTTGCATCTGAAAGGAG 59.868 47.826 0.00 0.00 0.00 3.69
1940 4151 3.099141 GGGGATTTTGCATCTGAAAGGA 58.901 45.455 0.00 0.00 0.00 3.36
1941 4152 2.833338 TGGGGATTTTGCATCTGAAAGG 59.167 45.455 0.00 0.00 0.00 3.11
1942 4153 3.765511 TCTGGGGATTTTGCATCTGAAAG 59.234 43.478 0.00 0.00 0.00 2.62
1943 4154 3.777087 TCTGGGGATTTTGCATCTGAAA 58.223 40.909 0.00 0.00 0.00 2.69
1944 4155 3.454719 TCTGGGGATTTTGCATCTGAA 57.545 42.857 0.00 0.00 0.00 3.02
1945 4156 3.091545 GTTCTGGGGATTTTGCATCTGA 58.908 45.455 0.00 0.00 0.00 3.27
1946 4157 2.827322 TGTTCTGGGGATTTTGCATCTG 59.173 45.455 0.00 0.00 0.00 2.90
1947 4158 3.094572 CTGTTCTGGGGATTTTGCATCT 58.905 45.455 0.00 0.00 0.00 2.90
1948 4159 2.417787 GCTGTTCTGGGGATTTTGCATC 60.418 50.000 0.00 0.00 0.00 3.91
1949 4160 1.551883 GCTGTTCTGGGGATTTTGCAT 59.448 47.619 0.00 0.00 0.00 3.96
1950 4161 0.968405 GCTGTTCTGGGGATTTTGCA 59.032 50.000 0.00 0.00 0.00 4.08
1951 4162 0.968405 TGCTGTTCTGGGGATTTTGC 59.032 50.000 0.00 0.00 0.00 3.68
1952 4163 2.028748 CCTTGCTGTTCTGGGGATTTTG 60.029 50.000 0.00 0.00 0.00 2.44
1953 4164 2.250924 CCTTGCTGTTCTGGGGATTTT 58.749 47.619 0.00 0.00 0.00 1.82
1954 4165 1.147817 ACCTTGCTGTTCTGGGGATTT 59.852 47.619 0.00 0.00 0.00 2.17
1955 4166 0.779997 ACCTTGCTGTTCTGGGGATT 59.220 50.000 0.00 0.00 0.00 3.01
1956 4167 1.668826 TACCTTGCTGTTCTGGGGAT 58.331 50.000 0.00 0.00 0.00 3.85
1957 4168 1.281867 CATACCTTGCTGTTCTGGGGA 59.718 52.381 0.00 0.00 0.00 4.81
1958 4169 1.281867 TCATACCTTGCTGTTCTGGGG 59.718 52.381 0.00 0.00 0.00 4.96
1959 4170 2.026822 ACTCATACCTTGCTGTTCTGGG 60.027 50.000 0.00 0.00 0.00 4.45
1960 4171 3.265791 GACTCATACCTTGCTGTTCTGG 58.734 50.000 0.00 0.00 0.00 3.86
1961 4172 3.055530 AGGACTCATACCTTGCTGTTCTG 60.056 47.826 0.00 0.00 33.55 3.02
1962 4173 3.177228 AGGACTCATACCTTGCTGTTCT 58.823 45.455 0.00 0.00 33.55 3.01
1963 4174 3.618690 AGGACTCATACCTTGCTGTTC 57.381 47.619 0.00 0.00 33.55 3.18
1964 4175 4.286032 TGTTAGGACTCATACCTTGCTGTT 59.714 41.667 0.00 0.00 38.76 3.16
1965 4176 3.838317 TGTTAGGACTCATACCTTGCTGT 59.162 43.478 0.00 0.00 38.76 4.40
1966 4177 4.471904 TGTTAGGACTCATACCTTGCTG 57.528 45.455 0.00 0.00 38.76 4.41
1967 4178 4.286032 TGTTGTTAGGACTCATACCTTGCT 59.714 41.667 0.00 0.00 38.76 3.91
1968 4179 4.575885 TGTTGTTAGGACTCATACCTTGC 58.424 43.478 0.00 0.00 38.76 4.01
1969 4180 6.231211 ACTTGTTGTTAGGACTCATACCTTG 58.769 40.000 0.00 0.00 38.76 3.61
1970 4181 6.435292 ACTTGTTGTTAGGACTCATACCTT 57.565 37.500 0.00 0.00 38.76 3.50
1971 4182 6.042781 TCAACTTGTTGTTAGGACTCATACCT 59.957 38.462 12.44 0.00 41.05 3.08
1972 4183 6.228258 TCAACTTGTTGTTAGGACTCATACC 58.772 40.000 12.44 0.00 37.07 2.73
1973 4184 7.724305 TTCAACTTGTTGTTAGGACTCATAC 57.276 36.000 12.44 0.00 37.07 2.39
1974 4185 8.918202 AATTCAACTTGTTGTTAGGACTCATA 57.082 30.769 12.44 0.00 37.07 2.15
1975 4186 7.823745 AATTCAACTTGTTGTTAGGACTCAT 57.176 32.000 12.44 0.00 37.07 2.90
1976 4187 8.208224 TCTAATTCAACTTGTTGTTAGGACTCA 58.792 33.333 16.64 3.22 37.07 3.41
1995 4206 8.762426 AGTTTTCGTAACTGACACTTCTAATTC 58.238 33.333 5.17 0.00 0.00 2.17
2003 4214 5.282510 CAGAGAGTTTTCGTAACTGACACT 58.717 41.667 9.76 2.40 0.00 3.55
2066 4290 7.961351 AGAAAGAGGATAAGGATGATACACAG 58.039 38.462 0.00 0.00 0.00 3.66
2072 4296 9.218525 TCTGTAAAGAAAGAGGATAAGGATGAT 57.781 33.333 0.00 0.00 0.00 2.45
2076 4300 9.892130 GATTTCTGTAAAGAAAGAGGATAAGGA 57.108 33.333 13.45 0.00 40.56 3.36
2172 4478 7.083875 TCTTATTGCCAGTTTGCTATGTTAC 57.916 36.000 0.00 0.00 0.00 2.50
2227 4533 5.123979 CCAGCTTGTATGGGTCTTAAAGTTC 59.876 44.000 0.00 0.00 33.94 3.01
2268 4574 3.553096 GCTAGCACTTATCCACGCTGTAT 60.553 47.826 10.63 0.00 35.93 2.29
2301 4607 2.692041 GGATCTGCAGAAAATGAAGGGG 59.308 50.000 22.50 0.00 34.92 4.79
2394 4702 6.263842 ACATATAATGGCATCACAAACCTCTG 59.736 38.462 0.00 0.00 33.60 3.35
2496 4808 0.291989 CGCGATCGTTCTTCTTGACG 59.708 55.000 17.81 3.49 0.00 4.35
2514 4826 0.978385 GCATCGCGATAAGCTCTACG 59.022 55.000 23.22 7.11 45.59 3.51
2585 4897 8.424133 TCTGCTGATCTGCTATTAATAGTGAAA 58.576 33.333 23.02 12.21 32.96 2.69
2695 5010 5.499139 TTGTCAAGACATTTCTGTTCCAC 57.501 39.130 3.43 0.00 41.52 4.02
2974 5306 8.913487 TTAACCTTAAGGACAAAAGGAGTAAG 57.087 34.615 28.52 0.00 44.27 2.34
3027 5359 8.083462 TCTTTGTTACATACTTGTGTAGCTTG 57.917 34.615 0.00 0.00 36.91 4.01
3244 5779 6.071560 TGTTGATAGAACAGTAGTCGAATGGT 60.072 38.462 0.00 0.00 0.00 3.55
3290 5825 8.659527 TGTATTTAGGATCTCATGCAAAGGATA 58.340 33.333 0.00 0.00 0.00 2.59
3324 6026 6.788243 TGCAACTAAATCTTGTGAGCATATG 58.212 36.000 0.00 0.00 0.00 1.78
3382 6084 3.490761 CGATTAATCCAATGGCCACAACC 60.491 47.826 8.16 0.00 0.00 3.77
3412 6114 4.318831 CGACTCCAACAAACTTACTTCAGC 60.319 45.833 0.00 0.00 0.00 4.26
3504 6228 0.185175 TGTAGCTCCTCCATCGGCTA 59.815 55.000 0.00 0.00 36.40 3.93
3515 6239 3.851098 CAACTTCTGTACCTGTAGCTCC 58.149 50.000 0.00 0.00 0.00 4.70
3644 6368 3.128349 GGAGCTGACTTTGTACGTTGAA 58.872 45.455 0.00 0.00 0.00 2.69
3811 6558 7.400599 TGTTACCAAGTATGTACTGGACTAG 57.599 40.000 5.17 0.00 36.50 2.57
3849 6596 7.765695 ACCACTGTAACTGATGATGAATTTT 57.234 32.000 0.00 0.00 0.00 1.82
3928 6680 7.342026 AGTTAATCTTGGAACTTTCACCTGTTT 59.658 33.333 0.00 0.00 31.83 2.83
4087 6840 1.953231 GCCCAAGGCCAATCAGAAGC 61.953 60.000 5.01 0.00 44.06 3.86
4149 6902 7.068470 TGGCATAGCATCTTTGACATGAAATTA 59.932 33.333 0.00 0.00 26.11 1.40
4226 6981 9.173939 CTTAGAAAATGGAATGATAAATGCGAC 57.826 33.333 0.00 0.00 0.00 5.19
4255 7010 9.797642 ATATGATGTTTCAAGTTGCATATCCTA 57.202 29.630 0.00 0.00 34.96 2.94
4351 7108 2.677542 TATGATAGAGGCGGAGGTGT 57.322 50.000 0.00 0.00 0.00 4.16
4352 7109 2.232452 CCTTATGATAGAGGCGGAGGTG 59.768 54.545 0.00 0.00 0.00 4.00
4353 7110 2.530701 CCTTATGATAGAGGCGGAGGT 58.469 52.381 0.00 0.00 0.00 3.85
4354 7111 1.827969 CCCTTATGATAGAGGCGGAGG 59.172 57.143 0.00 0.00 0.00 4.30
4355 7112 2.757868 CTCCCTTATGATAGAGGCGGAG 59.242 54.545 0.00 0.00 0.00 4.63
4356 7113 2.378886 TCTCCCTTATGATAGAGGCGGA 59.621 50.000 0.00 0.00 0.00 5.54
4357 7114 2.808919 TCTCCCTTATGATAGAGGCGG 58.191 52.381 0.00 0.00 0.00 6.13
4358 7115 4.082845 TCTTCTCCCTTATGATAGAGGCG 58.917 47.826 0.00 0.00 0.00 5.52
4359 7116 6.426646 TTTCTTCTCCCTTATGATAGAGGC 57.573 41.667 0.00 0.00 0.00 4.70
4384 7141 6.097412 TGAGCTGTGTCATGTATCTCTGTAAT 59.903 38.462 0.00 0.00 0.00 1.89
4403 7160 2.289010 GGTTTTTCCCCATGTTGAGCTG 60.289 50.000 0.00 0.00 0.00 4.24
4450 7207 3.572255 AGCTCCTACTCAATGCTACTAGC 59.428 47.826 0.61 0.61 42.82 3.42
4513 7270 2.504585 TCTGATTGCCTGAGAAGATGCT 59.495 45.455 0.00 0.00 0.00 3.79
4588 7345 2.272146 GAATGGGGAAGCGCCTGA 59.728 61.111 2.29 0.00 37.37 3.86
4590 7347 2.273449 CAGAATGGGGAAGCGCCT 59.727 61.111 2.29 0.00 37.37 5.52
4606 7363 3.797039 CAAGTGTGAGGAAGAACTGTCA 58.203 45.455 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.