Multiple sequence alignment - TraesCS1B01G285800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G285800 chr1B 100.000 5766 0 0 1771 7536 497126306 497132071 0.000000e+00 10648
1 TraesCS1B01G285800 chr1B 100.000 1426 0 0 1 1426 497124536 497125961 0.000000e+00 2634
2 TraesCS1B01G285800 chr1D 94.367 5645 188 55 1771 7343 372150491 372156077 0.000000e+00 8543
3 TraesCS1B01G285800 chr1D 94.920 1063 39 7 366 1426 372149411 372150460 0.000000e+00 1650
4 TraesCS1B01G285800 chr1D 95.166 331 16 0 1 331 372149084 372149414 2.410000e-144 523
5 TraesCS1B01G285800 chr1A 95.195 3392 98 23 1782 5128 471695805 471699176 0.000000e+00 5301
6 TraesCS1B01G285800 chr1A 90.537 2198 110 32 5125 7283 471699257 471701395 0.000000e+00 2817
7 TraesCS1B01G285800 chr1A 94.310 1441 47 8 1 1426 471694073 471695493 0.000000e+00 2174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G285800 chr1B 497124536 497132071 7535 False 6641.000000 10648 100.000000 1 7536 2 chr1B.!!$F1 7535
1 TraesCS1B01G285800 chr1D 372149084 372156077 6993 False 3572.000000 8543 94.817667 1 7343 3 chr1D.!!$F1 7342
2 TraesCS1B01G285800 chr1A 471694073 471701395 7322 False 3430.666667 5301 93.347333 1 7283 3 chr1A.!!$F1 7282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.542333 GAGGTAGAGGGGGTGAAAGC 59.458 60.000 0.00 0.0 0.00 3.51 F
193 194 0.832135 TCTTTCTGGCCTCTCCGTGT 60.832 55.000 3.32 0.0 37.80 4.49 F
739 741 1.139654 CGCCCAATGAGAGATGAAGGA 59.860 52.381 0.00 0.0 0.00 3.36 F
993 995 1.202330 CAGGAGAGGAGGCAACATCT 58.798 55.000 0.00 0.0 41.41 2.90 F
1290 1293 1.754226 CTTCCTGTACTGCTCCTCCTC 59.246 57.143 0.00 0.0 0.00 3.71 F
2103 2121 1.763770 CAGGAGGGAGTTGCAACCT 59.236 57.895 25.62 16.2 37.31 3.50 F
3854 3884 1.005340 GATTGGCGCAGAACAGAGAG 58.995 55.000 10.83 0.0 0.00 3.20 F
5421 5574 0.040067 CGTTCACCTTCTTGCCTTGC 60.040 55.000 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1098 1101 0.685097 GTGAACAGTAGGCCAGTGGA 59.315 55.000 15.20 0.0 31.20 4.02 R
2184 2202 0.184692 TGGTGTGGGCATCACTTTCA 59.815 50.000 10.14 4.3 46.20 2.69 R
2461 2482 1.827969 TGTAGGCAAAGAGAGGAGAGC 59.172 52.381 0.00 0.0 0.00 4.09 R
2848 2871 1.133823 TGTGACATTGTGTTCTGGGCT 60.134 47.619 0.00 0.0 0.00 5.19 R
3189 3212 2.447244 AGAACTGAAAGGACGCTCAG 57.553 50.000 0.00 0.0 43.90 3.35 R
3996 4026 1.485124 TCTGCTGAAGCCTAATCCGA 58.515 50.000 0.00 0.0 41.18 4.55 R
5580 5733 1.021390 CATGGACTGAACCCTCGCAC 61.021 60.000 0.00 0.0 0.00 5.34 R
7405 7617 0.033503 TCTACCATGCCCGTGAGAGA 60.034 55.000 0.00 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.353579 GCCATGAATTTGCCATTTCTGC 59.646 45.455 0.00 0.00 0.00 4.26
49 50 4.500127 TGAATTTGCCATTTCTGCTCATG 58.500 39.130 0.00 0.00 0.00 3.07
72 73 1.334054 GCGCTTCAAGCATTCTGTTG 58.666 50.000 10.73 0.00 42.58 3.33
139 140 1.372997 CAGACAGGAACCGTGTCCG 60.373 63.158 13.92 3.17 44.65 4.79
161 162 0.542333 GAGGTAGAGGGGGTGAAAGC 59.458 60.000 0.00 0.00 0.00 3.51
178 179 4.278170 TGAAAGCCACACGAAATGATCTTT 59.722 37.500 0.00 0.00 32.01 2.52
180 181 3.679389 AGCCACACGAAATGATCTTTCT 58.321 40.909 12.67 0.00 0.00 2.52
193 194 0.832135 TCTTTCTGGCCTCTCCGTGT 60.832 55.000 3.32 0.00 37.80 4.49
243 244 1.374758 AGACGCCAAGAGCTTTCCG 60.375 57.895 0.00 0.00 40.39 4.30
394 395 1.265095 TCGTAACCGATAGCGATCCAC 59.735 52.381 0.00 0.00 38.40 4.02
445 446 8.856247 GGCAACGGTAAAACTAAATTTCTATTG 58.144 33.333 0.00 0.00 0.00 1.90
457 458 6.867519 AAATTTCTATTGGACGGGGAAATT 57.132 33.333 0.00 0.00 43.71 1.82
506 507 3.099905 AGTGATGCTGACCTGTTAGCTA 58.900 45.455 14.13 0.00 42.02 3.32
634 635 2.820787 AGAAGTCTTGTGTACTCCCTCG 59.179 50.000 0.00 0.00 0.00 4.63
739 741 1.139654 CGCCCAATGAGAGATGAAGGA 59.860 52.381 0.00 0.00 0.00 3.36
776 778 3.181431 GGGCAGTATAGTAGGAGACAGGA 60.181 52.174 0.00 0.00 0.00 3.86
835 837 1.383248 CCCCTCCCCTCTCATCGTT 60.383 63.158 0.00 0.00 0.00 3.85
993 995 1.202330 CAGGAGAGGAGGCAACATCT 58.798 55.000 0.00 0.00 41.41 2.90
1033 1035 7.358770 TCCTCTTCTTTCTCCAATCTATCTG 57.641 40.000 0.00 0.00 0.00 2.90
1041 1043 8.478877 TCTTTCTCCAATCTATCTGTAGTTTCC 58.521 37.037 0.00 0.00 0.00 3.13
1065 1068 7.722728 TCCCTGTATACTTGAATACATCGTACT 59.277 37.037 4.17 0.00 40.59 2.73
1068 1071 9.395707 CTGTATACTTGAATACATCGTACTTCC 57.604 37.037 4.17 0.00 40.59 3.46
1096 1099 3.253432 CCTACGTACATGCATAGCTCTCA 59.747 47.826 0.00 0.00 0.00 3.27
1097 1100 3.085443 ACGTACATGCATAGCTCTCAC 57.915 47.619 0.00 0.00 0.00 3.51
1098 1101 2.690497 ACGTACATGCATAGCTCTCACT 59.310 45.455 0.00 0.00 0.00 3.41
1099 1102 3.243234 ACGTACATGCATAGCTCTCACTC 60.243 47.826 0.00 0.00 0.00 3.51
1100 1103 2.906691 ACATGCATAGCTCTCACTCC 57.093 50.000 0.00 0.00 0.00 3.85
1290 1293 1.754226 CTTCCTGTACTGCTCCTCCTC 59.246 57.143 0.00 0.00 0.00 3.71
1309 1312 4.162698 TCCTCCGCTCTCTAGTCTATATCC 59.837 50.000 0.00 0.00 0.00 2.59
1329 1344 3.646162 TCCCTCTGCTGTTTCTTCAACTA 59.354 43.478 0.00 0.00 36.21 2.24
1381 1398 4.677673 AAGTTGCTCCTTTTTGCATCTT 57.322 36.364 0.00 0.00 41.50 2.40
2013 2031 8.097038 TCACTAGTTTTTATCTGCTCTGTCATT 58.903 33.333 0.00 0.00 0.00 2.57
2103 2121 1.763770 CAGGAGGGAGTTGCAACCT 59.236 57.895 25.62 16.20 37.31 3.50
2184 2202 2.481969 CGGTGTCGATCCTGTCATGATT 60.482 50.000 0.00 0.00 39.00 2.57
2231 2249 6.668283 TGTAAGAGACTATAACTGCCTTTCCT 59.332 38.462 0.00 0.00 0.00 3.36
2848 2871 4.204970 AGCACTGACTCCAGCTCA 57.795 55.556 0.00 0.00 44.16 4.26
3189 3212 3.673599 GGGTCTGTGCTTTGAGCC 58.326 61.111 6.05 6.05 41.51 4.70
3218 3241 5.221342 CGTCCTTTCAGTTCTAGATATGCCT 60.221 44.000 0.00 0.00 0.00 4.75
3264 3287 2.978010 GTCGTTGGGTGGGCACTG 60.978 66.667 0.00 0.00 0.00 3.66
3267 3290 3.897122 GTTGGGTGGGCACTGGGA 61.897 66.667 0.00 0.00 0.00 4.37
3384 3408 3.721035 TGGCGACATCATAGTGATCTTG 58.279 45.455 0.00 0.00 34.28 3.02
3541 3565 4.883083 TGTTTTAAGAGAGAGACGTGCAT 58.117 39.130 0.00 0.00 0.00 3.96
3616 3641 6.824958 ACAGGAATTTTAGCTCCAGGTATA 57.175 37.500 0.00 0.00 33.83 1.47
3617 3642 6.592870 ACAGGAATTTTAGCTCCAGGTATAC 58.407 40.000 0.00 0.00 33.83 1.47
3744 3774 6.581388 AGATCCCAAGGTGAGATTCATTTA 57.419 37.500 0.00 0.00 0.00 1.40
3782 3812 1.808891 GCATGGCCCTGCATTTCATTC 60.809 52.381 26.10 0.00 41.87 2.67
3809 3839 3.623510 GCCATACTCTTCTTACTTGCACC 59.376 47.826 0.00 0.00 0.00 5.01
3854 3884 1.005340 GATTGGCGCAGAACAGAGAG 58.995 55.000 10.83 0.00 0.00 3.20
3996 4026 4.150897 TGTTCAGCAGTTAGAAACAGGT 57.849 40.909 0.00 0.00 0.00 4.00
4060 4090 2.087646 GCTCACAGGTTCCAATTCTCC 58.912 52.381 0.00 0.00 0.00 3.71
4075 4105 7.220030 TCCAATTCTCCAGAACATCTAATAGC 58.780 38.462 0.00 0.00 36.80 2.97
4102 4132 2.738846 CCACTATCGTTGCCATATGCTC 59.261 50.000 0.00 0.00 42.00 4.26
4200 4237 1.758936 TCTCATCCCTTGCAGCATTG 58.241 50.000 0.00 0.00 0.00 2.82
4421 4458 2.449518 TGTTCCACCTGAGGGCCA 60.450 61.111 6.18 0.00 35.63 5.36
4468 4505 3.731728 ATGACCGGCATGTGGGCT 61.732 61.111 12.45 0.00 40.61 5.19
4520 4557 3.896479 GCTTCCGGCCTTCAGAAG 58.104 61.111 14.12 14.12 39.99 2.85
4557 4594 2.096496 GCGAAGTTGCTACATGAATGCT 59.904 45.455 0.00 0.00 0.00 3.79
4582 4619 6.653320 TCCGTAGTGCTTTTAATTTGTCTGAT 59.347 34.615 0.00 0.00 0.00 2.90
4610 4647 6.054941 TGTGTGATGATTAAGGCGATGTTAT 58.945 36.000 0.00 0.00 0.00 1.89
4631 4668 2.175878 TGCTGAGTCTTCTTGCCTTC 57.824 50.000 0.00 0.00 0.00 3.46
4634 4671 3.324846 TGCTGAGTCTTCTTGCCTTCTTA 59.675 43.478 0.00 0.00 0.00 2.10
4857 4894 2.028130 GCTCTAGCTCTTGACAGGCTA 58.972 52.381 0.00 0.00 37.50 3.93
4906 4943 6.990349 TCAGGTCAGTATTTTTCTCTTCGTTT 59.010 34.615 0.00 0.00 0.00 3.60
4949 4986 4.866486 GTCAAAATCCCATGTTCTTGCATC 59.134 41.667 0.00 0.00 0.00 3.91
5216 5367 7.756272 TGCAGATAAACATCATTAGCACTTTTG 59.244 33.333 0.00 0.00 0.00 2.44
5281 5432 7.905265 TGATGTTTGTGGACCAATATTTTGAT 58.095 30.769 0.00 0.00 34.60 2.57
5298 5449 9.699410 ATATTTTGATCAATTGGTTGAGTCCTA 57.301 29.630 9.40 0.00 46.75 2.94
5301 5452 5.982356 TGATCAATTGGTTGAGTCCTAGAG 58.018 41.667 5.42 0.00 46.75 2.43
5421 5574 0.040067 CGTTCACCTTCTTGCCTTGC 60.040 55.000 0.00 0.00 0.00 4.01
5447 5600 5.670792 AATTATTCCGTGTGTCCTACTCA 57.329 39.130 0.00 0.00 0.00 3.41
5456 5609 4.558697 CGTGTGTCCTACTCACATTTCTGA 60.559 45.833 11.45 0.00 45.43 3.27
5467 5620 1.873591 ACATTTCTGACCACGTCTTGC 59.126 47.619 0.00 0.00 33.15 4.01
5468 5621 1.872952 CATTTCTGACCACGTCTTGCA 59.127 47.619 0.00 0.00 33.15 4.08
5476 5629 1.299541 CCACGTCTTGCATATCCACC 58.700 55.000 0.00 0.00 0.00 4.61
5478 5631 0.179084 ACGTCTTGCATATCCACCCG 60.179 55.000 0.00 0.00 0.00 5.28
5482 5635 2.343475 CTTGCATATCCACCCGGGCT 62.343 60.000 24.08 4.79 36.21 5.19
5491 5644 2.042261 ACCCGGGCTCCACCTATT 59.958 61.111 24.08 0.00 39.10 1.73
5504 5657 3.964031 TCCACCTATTTTTGCTGGTTGTT 59.036 39.130 0.00 0.00 0.00 2.83
5505 5658 4.038642 TCCACCTATTTTTGCTGGTTGTTC 59.961 41.667 0.00 0.00 0.00 3.18
5506 5659 4.202202 CCACCTATTTTTGCTGGTTGTTCA 60.202 41.667 0.00 0.00 0.00 3.18
5507 5660 5.355596 CACCTATTTTTGCTGGTTGTTCAA 58.644 37.500 0.00 0.00 0.00 2.69
5508 5661 5.234116 CACCTATTTTTGCTGGTTGTTCAAC 59.766 40.000 7.09 7.09 0.00 3.18
5509 5662 5.105146 ACCTATTTTTGCTGGTTGTTCAACA 60.105 36.000 15.89 0.00 0.00 3.33
5510 5663 5.463061 CCTATTTTTGCTGGTTGTTCAACAG 59.537 40.000 15.89 12.10 35.40 3.16
5511 5664 4.527509 TTTTTGCTGGTTGTTCAACAGA 57.472 36.364 15.89 3.09 34.21 3.41
5512 5665 4.734398 TTTTGCTGGTTGTTCAACAGAT 57.266 36.364 15.89 0.00 34.21 2.90
5513 5666 3.713858 TTGCTGGTTGTTCAACAGATG 57.286 42.857 15.89 5.46 34.21 2.90
5514 5667 1.337703 TGCTGGTTGTTCAACAGATGC 59.662 47.619 15.89 13.21 34.21 3.91
5515 5668 1.337703 GCTGGTTGTTCAACAGATGCA 59.662 47.619 15.89 0.00 34.21 3.96
5516 5669 2.859806 GCTGGTTGTTCAACAGATGCAC 60.860 50.000 15.89 0.00 34.21 4.57
5517 5670 2.358582 CTGGTTGTTCAACAGATGCACA 59.641 45.455 15.89 3.96 33.17 4.57
5518 5671 2.098934 TGGTTGTTCAACAGATGCACAC 59.901 45.455 15.89 0.00 34.83 3.82
5579 5732 7.608308 ATGTTTGTTGCACTTGTTGTAAAAT 57.392 28.000 0.00 0.00 30.79 1.82
5580 5733 6.825584 TGTTTGTTGCACTTGTTGTAAAATG 58.174 32.000 0.00 0.00 30.79 2.32
5603 5756 1.276421 CGAGGGTTCAGTCCATGAGTT 59.724 52.381 0.00 0.00 39.68 3.01
5604 5757 2.704572 GAGGGTTCAGTCCATGAGTTG 58.295 52.381 0.00 0.00 39.68 3.16
5605 5758 2.303022 GAGGGTTCAGTCCATGAGTTGA 59.697 50.000 0.00 0.00 39.68 3.18
5606 5759 2.039084 AGGGTTCAGTCCATGAGTTGAC 59.961 50.000 0.00 0.00 39.68 3.18
5607 5760 2.224523 GGGTTCAGTCCATGAGTTGACA 60.225 50.000 0.00 0.00 39.68 3.58
5608 5761 3.070018 GGTTCAGTCCATGAGTTGACAG 58.930 50.000 0.00 0.00 39.68 3.51
5609 5762 3.495100 GGTTCAGTCCATGAGTTGACAGT 60.495 47.826 0.00 0.00 39.68 3.55
5617 5770 5.700832 GTCCATGAGTTGACAGTTGTAATCA 59.299 40.000 0.00 0.00 0.00 2.57
5633 5786 6.525121 TGTAATCAAGAAAGAGACACAACG 57.475 37.500 0.00 0.00 0.00 4.10
5725 5878 9.367444 CACGAGATTAGTAGAAAAATAAGTGGT 57.633 33.333 0.00 0.00 0.00 4.16
5752 5905 5.598830 TGTCTTTGTGTAGGTTCTCTTCTCT 59.401 40.000 0.00 0.00 0.00 3.10
5757 5910 2.655407 TGTAGGTTCTCTTCTCTCCCCT 59.345 50.000 0.00 0.00 0.00 4.79
5786 5939 7.286546 TCTGAATAAAAGGAGATCGAGACATCT 59.713 37.037 0.00 0.00 35.70 2.90
5799 5952 3.801050 CGAGACATCTAATTGCTCCACTG 59.199 47.826 0.00 0.00 0.00 3.66
6067 6248 3.983344 GCTTTGCATCTTTCGTTGTCATT 59.017 39.130 0.00 0.00 0.00 2.57
6189 6372 6.549433 AACCCGTTTCACTGACCTAATATA 57.451 37.500 0.00 0.00 0.00 0.86
6368 6551 1.402259 CCTCGCGAGTAAGACAGACAT 59.598 52.381 32.41 0.00 0.00 3.06
6415 6599 9.335891 GTATAATACTCAGAATCACATCTCACG 57.664 37.037 0.00 0.00 0.00 4.35
6445 6629 5.692204 CGTATACTCTTTCGATTGCAGGAAT 59.308 40.000 0.56 0.00 0.00 3.01
6457 6641 1.406180 TGCAGGAATTTCATGATGCCG 59.594 47.619 14.80 0.00 27.97 5.69
6506 6690 0.033796 CCAGGCCATTCACCATCAGT 60.034 55.000 5.01 0.00 0.00 3.41
6508 6692 0.107508 AGGCCATTCACCATCAGTCG 60.108 55.000 5.01 0.00 0.00 4.18
6553 6737 1.885233 TGAAGCATCGCACAAATTCCA 59.115 42.857 0.00 0.00 0.00 3.53
6558 6742 2.865670 GCATCGCACAAATTCCACCAAA 60.866 45.455 0.00 0.00 0.00 3.28
6559 6743 3.388308 CATCGCACAAATTCCACCAAAA 58.612 40.909 0.00 0.00 0.00 2.44
6560 6744 3.526931 TCGCACAAATTCCACCAAAAA 57.473 38.095 0.00 0.00 0.00 1.94
6581 6765 0.606944 AAGAGACGCGAGGAGACTGT 60.607 55.000 15.93 0.00 44.43 3.55
6592 6776 3.119316 CGAGGAGACTGTAGCATTGTTCT 60.119 47.826 0.00 0.00 44.43 3.01
6593 6777 4.180057 GAGGAGACTGTAGCATTGTTCTG 58.820 47.826 0.00 0.00 44.43 3.02
6597 6781 4.310769 AGACTGTAGCATTGTTCTGTCAC 58.689 43.478 0.00 0.00 33.43 3.67
6690 6875 4.089361 CCAAGGGAAGAAATTAACTGGCT 58.911 43.478 0.00 0.00 0.00 4.75
6911 7098 9.277783 CGGAGGAATAAACAATTAATCTGATCT 57.722 33.333 0.00 0.00 0.00 2.75
6974 7161 6.904463 TTACCTAATTTGTCCCCTCAAAAC 57.096 37.500 0.00 0.00 40.05 2.43
7013 7200 2.593346 TGCGATGTTGCAACCTTTTT 57.407 40.000 26.14 6.46 43.02 1.94
7035 7222 1.668751 TCCCGATATTGAAACTTGCGC 59.331 47.619 0.00 0.00 0.00 6.09
7287 7497 0.919710 ACAAAGCTTAGGGGCCTAGG 59.080 55.000 3.67 3.67 0.00 3.02
7322 7534 1.600916 AACAAAGCTCACTCCCGGC 60.601 57.895 0.00 0.00 0.00 6.13
7336 7548 1.889105 CCGGCATGGTCTTGATCCG 60.889 63.158 0.00 0.00 36.90 4.18
7337 7549 2.537560 CGGCATGGTCTTGATCCGC 61.538 63.158 0.00 0.00 0.00 5.54
7341 7553 3.106986 ATGGTCTTGATCCGCGGGG 62.107 63.158 27.83 13.31 0.00 5.73
7359 7571 4.862823 CCGACCCTCCCTCCCTCC 62.863 77.778 0.00 0.00 0.00 4.30
7360 7572 4.862823 CGACCCTCCCTCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
7361 7573 4.500826 GACCCTCCCTCCCTCCCC 62.501 77.778 0.00 0.00 0.00 4.81
7376 7588 3.700350 CCCCCACTCTCTCCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
7377 7589 2.041405 CCCCACTCTCTCCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
7378 7590 2.041405 CCCACTCTCTCCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
7379 7591 2.041405 CCACTCTCTCCCCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
7380 7592 2.041405 CACTCTCTCCCCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
7381 7593 3.369388 ACTCTCTCCCCCTCCCCC 61.369 72.222 0.00 0.00 0.00 5.40
7382 7594 3.039526 CTCTCTCCCCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
7383 7595 3.036959 TCTCTCCCCCTCCCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
7384 7596 4.179599 CTCTCCCCCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
7391 7603 4.179599 CCTCCCCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
7392 7604 4.179599 CTCCCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
7395 7607 4.179599 CCCCTCCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
7396 7608 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
7397 7609 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
7398 7610 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
7399 7611 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
7400 7612 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
7401 7613 2.612251 CCTCCCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
7402 7614 2.612251 CTCCCTCCCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
7403 7615 2.018086 CTCCCTCCCTCCCTCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
7404 7616 1.550374 TCCCTCCCTCCCTCTCCTT 60.550 63.158 0.00 0.00 0.00 3.36
7405 7617 1.162951 TCCCTCCCTCCCTCTCCTTT 61.163 60.000 0.00 0.00 0.00 3.11
7406 7618 0.692756 CCCTCCCTCCCTCTCCTTTC 60.693 65.000 0.00 0.00 0.00 2.62
7407 7619 0.341609 CCTCCCTCCCTCTCCTTTCT 59.658 60.000 0.00 0.00 0.00 2.52
7408 7620 1.691163 CCTCCCTCCCTCTCCTTTCTC 60.691 61.905 0.00 0.00 0.00 2.87
7409 7621 1.290732 CTCCCTCCCTCTCCTTTCTCT 59.709 57.143 0.00 0.00 0.00 3.10
7410 7622 1.289530 TCCCTCCCTCTCCTTTCTCTC 59.710 57.143 0.00 0.00 0.00 3.20
7411 7623 1.007721 CCCTCCCTCTCCTTTCTCTCA 59.992 57.143 0.00 0.00 0.00 3.27
7412 7624 2.107366 CCTCCCTCTCCTTTCTCTCAC 58.893 57.143 0.00 0.00 0.00 3.51
7413 7625 1.748493 CTCCCTCTCCTTTCTCTCACG 59.252 57.143 0.00 0.00 0.00 4.35
7414 7626 0.820871 CCCTCTCCTTTCTCTCACGG 59.179 60.000 0.00 0.00 0.00 4.94
7415 7627 0.820871 CCTCTCCTTTCTCTCACGGG 59.179 60.000 0.00 0.00 0.00 5.28
7416 7628 0.174617 CTCTCCTTTCTCTCACGGGC 59.825 60.000 0.00 0.00 0.00 6.13
7417 7629 0.541998 TCTCCTTTCTCTCACGGGCA 60.542 55.000 0.00 0.00 0.00 5.36
7418 7630 0.539051 CTCCTTTCTCTCACGGGCAT 59.461 55.000 0.00 0.00 0.00 4.40
7419 7631 0.250234 TCCTTTCTCTCACGGGCATG 59.750 55.000 0.00 0.00 0.00 4.06
7420 7632 0.745845 CCTTTCTCTCACGGGCATGG 60.746 60.000 0.00 0.00 0.00 3.66
7421 7633 0.036010 CTTTCTCTCACGGGCATGGT 60.036 55.000 0.00 0.00 0.00 3.55
7422 7634 1.207089 CTTTCTCTCACGGGCATGGTA 59.793 52.381 0.00 0.00 0.00 3.25
7423 7635 0.824109 TTCTCTCACGGGCATGGTAG 59.176 55.000 0.00 0.00 0.00 3.18
7424 7636 0.033503 TCTCTCACGGGCATGGTAGA 60.034 55.000 0.00 0.00 0.00 2.59
7425 7637 0.387202 CTCTCACGGGCATGGTAGAG 59.613 60.000 0.00 0.00 0.00 2.43
7426 7638 1.043116 TCTCACGGGCATGGTAGAGG 61.043 60.000 0.00 0.00 0.00 3.69
7427 7639 1.305802 TCACGGGCATGGTAGAGGT 60.306 57.895 0.00 0.00 0.00 3.85
7428 7640 1.153369 CACGGGCATGGTAGAGGTG 60.153 63.158 0.00 0.00 0.00 4.00
7429 7641 2.367202 ACGGGCATGGTAGAGGTGG 61.367 63.158 0.00 0.00 0.00 4.61
7430 7642 2.193248 GGGCATGGTAGAGGTGGC 59.807 66.667 0.00 0.00 37.66 5.01
7431 7643 2.203070 GGCATGGTAGAGGTGGCG 60.203 66.667 0.00 0.00 0.00 5.69
7432 7644 2.203070 GCATGGTAGAGGTGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
7433 7645 2.203070 CATGGTAGAGGTGGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
7434 7646 2.365635 ATGGTAGAGGTGGCGGCT 60.366 61.111 11.43 0.00 0.00 5.52
7435 7647 2.435693 ATGGTAGAGGTGGCGGCTC 61.436 63.158 11.43 6.49 0.00 4.70
7436 7648 2.760385 GGTAGAGGTGGCGGCTCT 60.760 66.667 11.43 7.54 0.00 4.09
7437 7649 2.496817 GTAGAGGTGGCGGCTCTG 59.503 66.667 11.43 0.00 0.00 3.35
7438 7650 2.759973 TAGAGGTGGCGGCTCTGG 60.760 66.667 11.43 0.00 0.00 3.86
7439 7651 3.296842 TAGAGGTGGCGGCTCTGGA 62.297 63.158 11.43 0.00 0.00 3.86
7440 7652 2.589610 TAGAGGTGGCGGCTCTGGAT 62.590 60.000 11.43 0.00 0.00 3.41
7441 7653 3.453070 GAGGTGGCGGCTCTGGATC 62.453 68.421 11.43 0.82 0.00 3.36
7442 7654 4.554036 GGTGGCGGCTCTGGATCC 62.554 72.222 11.43 4.20 0.00 3.36
7443 7655 3.785859 GTGGCGGCTCTGGATCCA 61.786 66.667 15.27 15.27 0.00 3.41
7444 7656 2.769621 TGGCGGCTCTGGATCCAT 60.770 61.111 16.63 0.00 0.00 3.41
7445 7657 2.377810 TGGCGGCTCTGGATCCATT 61.378 57.895 16.63 0.00 0.00 3.16
7446 7658 1.895707 GGCGGCTCTGGATCCATTG 60.896 63.158 16.63 12.11 0.00 2.82
7447 7659 1.895707 GCGGCTCTGGATCCATTGG 60.896 63.158 16.63 9.48 0.00 3.16
7448 7660 1.528824 CGGCTCTGGATCCATTGGT 59.471 57.895 16.63 0.00 0.00 3.67
7449 7661 0.816825 CGGCTCTGGATCCATTGGTG 60.817 60.000 16.63 6.04 0.00 4.17
7450 7662 0.548031 GGCTCTGGATCCATTGGTGA 59.452 55.000 16.63 7.71 0.00 4.02
7451 7663 1.064463 GGCTCTGGATCCATTGGTGAA 60.064 52.381 16.63 0.00 0.00 3.18
7452 7664 2.295885 GCTCTGGATCCATTGGTGAAG 58.704 52.381 16.63 0.36 0.00 3.02
7453 7665 2.928334 CTCTGGATCCATTGGTGAAGG 58.072 52.381 16.63 0.00 0.00 3.46
7454 7666 2.507058 CTCTGGATCCATTGGTGAAGGA 59.493 50.000 16.63 4.60 35.59 3.36
7455 7667 2.507058 TCTGGATCCATTGGTGAAGGAG 59.493 50.000 16.63 0.00 34.40 3.69
7456 7668 2.240667 CTGGATCCATTGGTGAAGGAGT 59.759 50.000 16.63 0.00 34.40 3.85
7457 7669 2.025981 TGGATCCATTGGTGAAGGAGTG 60.026 50.000 11.44 0.00 34.40 3.51
7458 7670 2.648059 GATCCATTGGTGAAGGAGTGG 58.352 52.381 1.86 0.00 34.40 4.00
7459 7671 1.444933 TCCATTGGTGAAGGAGTGGT 58.555 50.000 1.86 0.00 0.00 4.16
7460 7672 1.073763 TCCATTGGTGAAGGAGTGGTG 59.926 52.381 1.86 0.00 0.00 4.17
7461 7673 1.538047 CATTGGTGAAGGAGTGGTGG 58.462 55.000 0.00 0.00 0.00 4.61
7462 7674 0.405585 ATTGGTGAAGGAGTGGTGGG 59.594 55.000 0.00 0.00 0.00 4.61
7463 7675 1.715019 TTGGTGAAGGAGTGGTGGGG 61.715 60.000 0.00 0.00 0.00 4.96
7464 7676 2.757077 GTGAAGGAGTGGTGGGGG 59.243 66.667 0.00 0.00 0.00 5.40
7465 7677 1.846124 GTGAAGGAGTGGTGGGGGA 60.846 63.158 0.00 0.00 0.00 4.81
7466 7678 1.846124 TGAAGGAGTGGTGGGGGAC 60.846 63.158 0.00 0.00 0.00 4.46
7467 7679 1.846124 GAAGGAGTGGTGGGGGACA 60.846 63.158 0.00 0.00 0.00 4.02
7468 7680 1.386772 AAGGAGTGGTGGGGGACAA 60.387 57.895 0.00 0.00 0.00 3.18
7469 7681 0.996762 AAGGAGTGGTGGGGGACAAA 60.997 55.000 0.00 0.00 0.00 2.83
7470 7682 1.074951 GGAGTGGTGGGGGACAAAG 59.925 63.158 0.00 0.00 0.00 2.77
7471 7683 1.716028 GGAGTGGTGGGGGACAAAGT 61.716 60.000 0.00 0.00 0.00 2.66
7472 7684 0.537371 GAGTGGTGGGGGACAAAGTG 60.537 60.000 0.00 0.00 0.00 3.16
7473 7685 1.530655 GTGGTGGGGGACAAAGTGG 60.531 63.158 0.00 0.00 0.00 4.00
7474 7686 2.009882 TGGTGGGGGACAAAGTGGT 61.010 57.895 0.00 0.00 0.00 4.16
7475 7687 1.530655 GGTGGGGGACAAAGTGGTG 60.531 63.158 0.00 0.00 0.00 4.17
7476 7688 1.534697 GTGGGGGACAAAGTGGTGA 59.465 57.895 0.00 0.00 0.00 4.02
7477 7689 0.106419 GTGGGGGACAAAGTGGTGAA 60.106 55.000 0.00 0.00 0.00 3.18
7478 7690 0.106419 TGGGGGACAAAGTGGTGAAC 60.106 55.000 0.00 0.00 0.00 3.18
7479 7691 0.106419 GGGGGACAAAGTGGTGAACA 60.106 55.000 0.00 0.00 0.00 3.18
7480 7692 1.318576 GGGGACAAAGTGGTGAACAG 58.681 55.000 0.00 0.00 0.00 3.16
7481 7693 1.133915 GGGGACAAAGTGGTGAACAGA 60.134 52.381 0.00 0.00 0.00 3.41
7482 7694 2.222027 GGGACAAAGTGGTGAACAGAG 58.778 52.381 0.00 0.00 0.00 3.35
7483 7695 1.604278 GGACAAAGTGGTGAACAGAGC 59.396 52.381 0.00 0.00 0.00 4.09
7484 7696 1.604278 GACAAAGTGGTGAACAGAGCC 59.396 52.381 0.00 0.00 0.00 4.70
7485 7697 0.588252 CAAAGTGGTGAACAGAGCCG 59.412 55.000 0.00 0.00 0.00 5.52
7486 7698 0.535102 AAAGTGGTGAACAGAGCCGG 60.535 55.000 0.00 0.00 0.00 6.13
7487 7699 2.358737 GTGGTGAACAGAGCCGGG 60.359 66.667 2.18 0.00 0.00 5.73
7488 7700 4.329545 TGGTGAACAGAGCCGGGC 62.330 66.667 12.11 12.11 0.00 6.13
7489 7701 4.329545 GGTGAACAGAGCCGGGCA 62.330 66.667 23.09 0.00 0.00 5.36
7490 7702 3.050275 GTGAACAGAGCCGGGCAC 61.050 66.667 23.09 15.87 0.00 5.01
7503 7715 2.044946 GGCACCTTGGCTGGTAGG 60.045 66.667 2.68 0.00 40.14 3.18
7504 7716 2.044946 GCACCTTGGCTGGTAGGG 60.045 66.667 2.68 0.00 38.45 3.53
7505 7717 2.677228 CACCTTGGCTGGTAGGGG 59.323 66.667 2.68 0.00 38.45 4.79
7506 7718 2.614013 ACCTTGGCTGGTAGGGGG 60.614 66.667 1.08 0.00 38.79 5.40
7521 7733 3.846430 GGGGGCCGTTACGAGAGG 61.846 72.222 6.24 0.00 0.00 3.69
7522 7734 3.846430 GGGGCCGTTACGAGAGGG 61.846 72.222 6.24 0.00 0.00 4.30
7523 7735 2.757099 GGGCCGTTACGAGAGGGA 60.757 66.667 6.24 0.00 0.00 4.20
7524 7736 2.353610 GGGCCGTTACGAGAGGGAA 61.354 63.158 6.24 0.00 0.00 3.97
7525 7737 1.141234 GGCCGTTACGAGAGGGAAG 59.859 63.158 6.24 0.00 0.00 3.46
7526 7738 1.318158 GGCCGTTACGAGAGGGAAGA 61.318 60.000 6.24 0.00 0.00 2.87
7527 7739 0.745468 GCCGTTACGAGAGGGAAGAT 59.255 55.000 6.24 0.00 0.00 2.40
7528 7740 1.136500 GCCGTTACGAGAGGGAAGATT 59.864 52.381 6.24 0.00 0.00 2.40
7529 7741 2.810650 CCGTTACGAGAGGGAAGATTG 58.189 52.381 6.24 0.00 0.00 2.67
7530 7742 2.165845 CCGTTACGAGAGGGAAGATTGT 59.834 50.000 6.24 0.00 0.00 2.71
7531 7743 3.179830 CGTTACGAGAGGGAAGATTGTG 58.820 50.000 0.00 0.00 0.00 3.33
7532 7744 2.930682 GTTACGAGAGGGAAGATTGTGC 59.069 50.000 0.00 0.00 0.00 4.57
7533 7745 1.270907 ACGAGAGGGAAGATTGTGCT 58.729 50.000 0.00 0.00 0.00 4.40
7534 7746 2.457598 ACGAGAGGGAAGATTGTGCTA 58.542 47.619 0.00 0.00 0.00 3.49
7535 7747 3.034635 ACGAGAGGGAAGATTGTGCTAT 58.965 45.455 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.334054 GCTTGAAGCGCAAACATGAG 58.666 50.000 11.47 3.19 35.74 2.90
49 50 1.717645 CAGAATGCTTGAAGCGCAAAC 59.282 47.619 11.47 0.08 46.26 2.93
72 73 6.826893 TTTGCAAAGAACAATCAAGTTAGC 57.173 33.333 8.05 0.00 0.00 3.09
139 140 3.155167 CACCCCCTCTACCTCCGC 61.155 72.222 0.00 0.00 0.00 5.54
147 148 1.774217 TGTGGCTTTCACCCCCTCT 60.774 57.895 0.00 0.00 45.48 3.69
161 162 3.426695 GCCAGAAAGATCATTTCGTGTGG 60.427 47.826 13.84 13.84 33.45 4.17
165 166 3.054802 AGAGGCCAGAAAGATCATTTCGT 60.055 43.478 5.01 0.00 33.86 3.85
178 179 2.680352 GGACACGGAGAGGCCAGA 60.680 66.667 5.01 0.00 35.94 3.86
180 181 2.111999 CTTTGGACACGGAGAGGCCA 62.112 60.000 5.01 0.00 35.94 5.36
193 194 5.329035 GCAGATTTGCTTAATCCTTTGGA 57.671 39.130 0.00 0.00 46.95 3.53
217 218 1.989430 CTCTTGGCGTCTGAGTTCTC 58.011 55.000 0.00 0.00 0.00 2.87
243 244 4.332819 AGCGAAAGTGCATTTATACTCACC 59.667 41.667 0.00 0.00 37.31 4.02
394 395 2.475818 TGCTCTGTTTGCAAATGCTTG 58.524 42.857 16.21 6.49 42.66 4.01
426 427 8.186163 CCCCGTCCAATAGAAATTTAGTTTTAC 58.814 37.037 0.00 0.00 0.00 2.01
445 446 8.139350 CCAAATACTAAAATAATTTCCCCGTCC 58.861 37.037 0.00 0.00 0.00 4.79
457 458 4.630505 TGTCACGCGCCAAATACTAAAATA 59.369 37.500 5.73 0.00 0.00 1.40
506 507 8.489489 TGCTCATTTGAGATTATCCTTACTTCT 58.511 33.333 11.70 0.00 44.74 2.85
634 635 6.823689 AGAACAGAGAGACAGAGAGATAAGAC 59.176 42.308 0.00 0.00 0.00 3.01
776 778 0.980423 GGGCTTTCTCTGTCAGGAGT 59.020 55.000 0.00 0.00 35.11 3.85
835 837 5.126869 CAGATTTCACAGGCTAGAGAGAGAA 59.873 44.000 0.00 0.00 0.00 2.87
993 995 8.441311 AAGAAGAGGAGCATACCATATGATAA 57.559 34.615 3.65 0.00 0.00 1.75
1041 1043 9.395707 GAAGTACGATGTATTCAAGTATACAGG 57.604 37.037 5.50 0.00 42.49 4.00
1068 1071 5.048643 AGCTATGCATGTACGTAGGAACTAG 60.049 44.000 10.16 0.00 44.14 2.57
1071 1074 3.978687 AGCTATGCATGTACGTAGGAAC 58.021 45.455 10.16 0.00 31.06 3.62
1096 1099 0.977395 GAACAGTAGGCCAGTGGAGT 59.023 55.000 15.20 0.34 31.20 3.85
1097 1100 0.976641 TGAACAGTAGGCCAGTGGAG 59.023 55.000 15.20 0.00 31.20 3.86
1098 1101 0.685097 GTGAACAGTAGGCCAGTGGA 59.315 55.000 15.20 0.00 31.20 4.02
1099 1102 0.687354 AGTGAACAGTAGGCCAGTGG 59.313 55.000 5.01 4.20 31.20 4.00
1100 1103 2.146342 CAAGTGAACAGTAGGCCAGTG 58.854 52.381 5.01 7.00 0.00 3.66
1290 1293 4.163458 AGAGGGATATAGACTAGAGAGCGG 59.837 50.000 0.00 0.00 0.00 5.52
1309 1312 4.636249 AGTAGTTGAAGAAACAGCAGAGG 58.364 43.478 0.00 0.00 41.61 3.69
1329 1344 2.291465 TGTTGTCTTCGCACGTACTAGT 59.709 45.455 0.00 0.00 0.00 2.57
2160 2178 3.718210 GACAGGATCGACACCGGCC 62.718 68.421 0.00 0.00 36.24 6.13
2184 2202 0.184692 TGGTGTGGGCATCACTTTCA 59.815 50.000 10.14 4.30 46.20 2.69
2231 2249 5.947663 AGAAAGGGAGAGAAGAGATCGATA 58.052 41.667 0.00 0.00 0.00 2.92
2413 2431 2.168106 TCACACCATTTTTGCTGTTGCT 59.832 40.909 0.00 0.00 40.48 3.91
2461 2482 1.827969 TGTAGGCAAAGAGAGGAGAGC 59.172 52.381 0.00 0.00 0.00 4.09
2848 2871 1.133823 TGTGACATTGTGTTCTGGGCT 60.134 47.619 0.00 0.00 0.00 5.19
3189 3212 2.447244 AGAACTGAAAGGACGCTCAG 57.553 50.000 0.00 0.00 43.90 3.35
3218 3241 7.865385 CCATGAACTCGGTTTTTCTATTCAAAA 59.135 33.333 0.00 0.00 0.00 2.44
3264 3287 6.515035 CGGTTCTAGAAATATGCCATTTTCCC 60.515 42.308 6.78 0.00 33.30 3.97
3267 3290 5.594317 AGCGGTTCTAGAAATATGCCATTTT 59.406 36.000 6.78 0.00 0.00 1.82
3344 3368 4.613622 CGCCAATCATCTTTTTGTCGACTT 60.614 41.667 17.92 0.00 0.00 3.01
3345 3369 3.120199 CGCCAATCATCTTTTTGTCGACT 60.120 43.478 17.92 0.00 0.00 4.18
3346 3370 3.120338 TCGCCAATCATCTTTTTGTCGAC 60.120 43.478 9.11 9.11 0.00 4.20
3350 3374 4.218200 TGATGTCGCCAATCATCTTTTTGT 59.782 37.500 0.00 0.00 40.46 2.83
3384 3408 5.745227 TCTATCCATCAAAAGGAGGAACAC 58.255 41.667 0.00 0.00 38.83 3.32
3690 3720 3.129988 GCCATCTTTTCTTGTGGATCCAG 59.870 47.826 16.81 3.53 33.53 3.86
3744 3774 3.591196 TGCAAGCAACAAACTGAAACT 57.409 38.095 0.00 0.00 0.00 2.66
3809 3839 8.973378 CGCCTTTCAGTCTAAGAAATAATAGAG 58.027 37.037 0.00 0.00 34.75 2.43
3854 3884 2.511145 CTGCTCTTCCTCGCAGCC 60.511 66.667 0.00 0.00 45.90 4.85
3996 4026 1.485124 TCTGCTGAAGCCTAATCCGA 58.515 50.000 0.00 0.00 41.18 4.55
4060 4090 6.765036 AGTGGTGAATGCTATTAGATGTTCTG 59.235 38.462 0.00 0.00 0.00 3.02
4102 4132 9.793245 CCTGAAACGATATTATTAAAGCGTTAG 57.207 33.333 1.79 0.00 40.52 2.34
4200 4237 1.332375 TGGTAACGTTGTGAAGCTTGC 59.668 47.619 11.99 0.00 42.51 4.01
4264 4301 3.206150 GGCATACTCCATGTCGAACATT 58.794 45.455 0.00 0.00 36.53 2.71
4358 4395 2.100631 CGACAATGGTGCCGAGGTC 61.101 63.158 0.00 0.00 0.00 3.85
4421 4458 4.148825 GTCGGACCTGGCGAGCAT 62.149 66.667 0.00 0.00 0.00 3.79
4520 4557 1.226717 CGCGCTAGACCTTGAGGAC 60.227 63.158 5.56 0.00 38.94 3.85
4557 4594 5.992829 TCAGACAAATTAAAAGCACTACGGA 59.007 36.000 0.00 0.00 0.00 4.69
4582 4619 4.574892 TCGCCTTAATCATCACACAAAGA 58.425 39.130 0.00 0.00 0.00 2.52
4610 4647 3.517100 AGAAGGCAAGAAGACTCAGCATA 59.483 43.478 0.00 0.00 30.53 3.14
4683 4720 1.604593 GTTGCACATCCCCAGCAGT 60.605 57.895 0.00 0.00 39.72 4.40
4920 4957 1.176527 CATGGGATTTTGACGGCAGT 58.823 50.000 0.00 0.00 0.00 4.40
5178 5329 5.683681 TGTTTATCTGCATGATCTAGCCAA 58.316 37.500 0.00 0.00 36.65 4.52
5281 5432 6.042638 CTTCTCTAGGACTCAACCAATTGA 57.957 41.667 7.12 0.00 42.73 2.57
5342 5495 8.254508 AGAAAGTGATAGGTGTTTATGTCTCTC 58.745 37.037 0.00 0.00 0.00 3.20
5421 5574 7.709182 TGAGTAGGACACACGGAATAATTTATG 59.291 37.037 0.00 0.00 0.00 1.90
5447 5600 1.873591 GCAAGACGTGGTCAGAAATGT 59.126 47.619 0.00 0.00 34.60 2.71
5456 5609 1.406887 GGTGGATATGCAAGACGTGGT 60.407 52.381 0.00 0.00 0.00 4.16
5467 5620 2.146724 TGGAGCCCGGGTGGATATG 61.147 63.158 24.63 0.00 37.49 1.78
5468 5621 2.147387 GTGGAGCCCGGGTGGATAT 61.147 63.158 24.63 0.77 37.49 1.63
5476 5629 1.102978 CAAAAATAGGTGGAGCCCGG 58.897 55.000 0.00 0.00 38.26 5.73
5478 5631 1.478105 CAGCAAAAATAGGTGGAGCCC 59.522 52.381 0.00 0.00 38.26 5.19
5491 5644 4.431809 CATCTGTTGAACAACCAGCAAAA 58.568 39.130 13.87 0.00 40.46 2.44
5504 5657 5.993441 CCAGATATATGTGTGCATCTGTTGA 59.007 40.000 8.88 0.00 41.76 3.18
5505 5658 5.993441 TCCAGATATATGTGTGCATCTGTTG 59.007 40.000 8.88 0.00 41.76 3.33
5506 5659 6.178607 TCCAGATATATGTGTGCATCTGTT 57.821 37.500 8.88 0.00 41.76 3.16
5507 5660 5.813513 TCCAGATATATGTGTGCATCTGT 57.186 39.130 8.88 0.00 41.76 3.41
5508 5661 5.993441 TGTTCCAGATATATGTGTGCATCTG 59.007 40.000 8.88 3.24 42.57 2.90
5509 5662 6.178607 TGTTCCAGATATATGTGTGCATCT 57.821 37.500 8.88 0.00 36.58 2.90
5510 5663 5.106791 GCTGTTCCAGATATATGTGTGCATC 60.107 44.000 8.88 0.00 33.46 3.91
5511 5664 4.758674 GCTGTTCCAGATATATGTGTGCAT 59.241 41.667 8.88 0.00 34.87 3.96
5512 5665 4.129380 GCTGTTCCAGATATATGTGTGCA 58.871 43.478 8.88 4.26 32.44 4.57
5513 5666 4.384056 AGCTGTTCCAGATATATGTGTGC 58.616 43.478 8.88 5.41 32.44 4.57
5514 5667 5.237996 CCAAGCTGTTCCAGATATATGTGTG 59.762 44.000 8.88 1.49 32.44 3.82
5515 5668 5.130975 TCCAAGCTGTTCCAGATATATGTGT 59.869 40.000 8.88 0.00 32.44 3.72
5516 5669 5.614308 TCCAAGCTGTTCCAGATATATGTG 58.386 41.667 2.86 2.86 32.44 3.21
5517 5670 5.894298 TCCAAGCTGTTCCAGATATATGT 57.106 39.130 0.00 0.00 32.44 2.29
5518 5671 6.470278 TGATCCAAGCTGTTCCAGATATATG 58.530 40.000 0.00 0.00 32.44 1.78
5579 5732 1.480212 ATGGACTGAACCCTCGCACA 61.480 55.000 0.00 0.00 0.00 4.57
5580 5733 1.021390 CATGGACTGAACCCTCGCAC 61.021 60.000 0.00 0.00 0.00 5.34
5603 5756 7.224753 GTGTCTCTTTCTTGATTACAACTGTCA 59.775 37.037 0.00 0.00 32.27 3.58
5604 5757 7.224753 TGTGTCTCTTTCTTGATTACAACTGTC 59.775 37.037 0.00 0.00 32.27 3.51
5605 5758 7.047891 TGTGTCTCTTTCTTGATTACAACTGT 58.952 34.615 0.00 0.00 32.27 3.55
5606 5759 7.482654 TGTGTCTCTTTCTTGATTACAACTG 57.517 36.000 0.00 0.00 32.27 3.16
5607 5760 7.254455 CGTTGTGTCTCTTTCTTGATTACAACT 60.254 37.037 0.00 0.00 38.90 3.16
5608 5761 6.846283 CGTTGTGTCTCTTTCTTGATTACAAC 59.154 38.462 0.00 0.00 38.38 3.32
5609 5762 6.759356 TCGTTGTGTCTCTTTCTTGATTACAA 59.241 34.615 0.00 0.00 34.65 2.41
5617 5770 3.821421 AGGTCGTTGTGTCTCTTTCTT 57.179 42.857 0.00 0.00 0.00 2.52
5633 5786 6.026947 TCTCTAAGTGCTCAAGTTTAGGTC 57.973 41.667 0.00 0.00 0.00 3.85
5725 5878 7.963532 AGAAGAGAACCTACACAAAGACAATA 58.036 34.615 0.00 0.00 0.00 1.90
5735 5888 2.761767 GGGGAGAGAAGAGAACCTACAC 59.238 54.545 0.00 0.00 0.00 2.90
5757 5910 8.914011 TGTCTCGATCTCCTTTTATTCAGATAA 58.086 33.333 0.00 0.00 0.00 1.75
5799 5952 6.127730 CCACAAACCACAACCTAAATATCTCC 60.128 42.308 0.00 0.00 0.00 3.71
5815 5968 7.124448 ACCAAAGTAAAGTTTATCCACAAACCA 59.876 33.333 0.00 0.00 38.86 3.67
5916 6089 6.161855 TGCTATGTAGGATCTTAACACAGG 57.838 41.667 0.00 0.00 0.00 4.00
5965 6142 1.644509 ACTCTAGGGTGTGTGATGCA 58.355 50.000 0.00 0.00 0.00 3.96
6015 6193 2.432146 CTGCTTGAGACATGGGCTAGTA 59.568 50.000 0.00 0.00 0.00 1.82
6162 6345 1.875514 GGTCAGTGAAACGGGTTAACC 59.124 52.381 16.85 16.85 45.86 2.85
6189 6372 2.563620 TCACTTGCAATGCCATGTTGAT 59.436 40.909 1.53 0.00 0.00 2.57
6251 6434 1.990060 CCTGGTGGTGAGGATCCGT 60.990 63.158 5.98 0.00 31.48 4.69
6278 6461 2.282958 AGGGAGACGAAGCACCGA 60.283 61.111 4.78 0.00 0.00 4.69
6368 6551 3.507622 ACTGTTGATGAGTGAGATCGTCA 59.492 43.478 0.00 0.00 42.16 4.35
6415 6599 1.003116 TCGAAAGAGTATACGCCGAGC 60.003 52.381 2.68 0.00 34.84 5.03
6445 6629 2.945008 GACATTCTCCGGCATCATGAAA 59.055 45.455 0.00 0.00 0.00 2.69
6457 6641 2.167281 TGCTGTAGAGCTGACATTCTCC 59.833 50.000 13.66 0.00 46.39 3.71
6506 6690 0.944386 GAGAACTGGTTTTGCTGCGA 59.056 50.000 0.00 0.00 0.00 5.10
6508 6692 0.040067 CGGAGAACTGGTTTTGCTGC 60.040 55.000 0.00 0.00 0.00 5.25
6559 6743 1.614413 AGTCTCCTCGCGTCTCTTTTT 59.386 47.619 5.77 0.00 0.00 1.94
6560 6744 1.068194 CAGTCTCCTCGCGTCTCTTTT 60.068 52.381 5.77 0.00 0.00 2.27
6561 6745 0.523966 CAGTCTCCTCGCGTCTCTTT 59.476 55.000 5.77 0.00 0.00 2.52
6564 6748 0.653636 CTACAGTCTCCTCGCGTCTC 59.346 60.000 5.77 0.00 0.00 3.36
6566 6750 1.062845 GCTACAGTCTCCTCGCGTC 59.937 63.158 5.77 0.00 0.00 5.19
6577 6761 3.403038 GGTGACAGAACAATGCTACAGT 58.597 45.455 0.00 0.00 0.00 3.55
6581 6765 2.805671 CAACGGTGACAGAACAATGCTA 59.194 45.455 0.00 0.00 0.00 3.49
6592 6776 4.938832 CCCAATATCTTAACAACGGTGACA 59.061 41.667 7.88 0.00 0.00 3.58
6593 6777 5.180271 TCCCAATATCTTAACAACGGTGAC 58.820 41.667 7.88 0.00 0.00 3.67
6597 6781 5.067283 CCCTTTCCCAATATCTTAACAACGG 59.933 44.000 0.00 0.00 0.00 4.44
6690 6875 1.596752 AACACACGCGATGAGCCAA 60.597 52.632 15.93 0.00 44.76 4.52
6911 7098 1.406898 TGTCGTTTTGGCAAATGCTCA 59.593 42.857 14.29 8.60 41.70 4.26
6974 7161 6.559810 TCGCAAATCAGGTAATGGTTTATTG 58.440 36.000 0.00 0.00 40.35 1.90
7013 7200 3.426963 GCGCAAGTTTCAATATCGGGAAA 60.427 43.478 0.30 0.00 41.68 3.13
7026 7213 2.203337 TGGCCTCAGCGCAAGTTT 60.203 55.556 11.47 0.00 41.24 2.66
7035 7222 3.633986 GGATAATTTTGTCCTGGCCTCAG 59.366 47.826 3.32 0.00 40.59 3.35
7287 7497 5.751243 TTTGTTGTTCTGTTCTTAGCCTC 57.249 39.130 0.00 0.00 0.00 4.70
7294 7504 4.265073 AGTGAGCTTTGTTGTTCTGTTCT 58.735 39.130 0.00 0.00 0.00 3.01
7295 7505 4.496507 GGAGTGAGCTTTGTTGTTCTGTTC 60.497 45.833 0.00 0.00 0.00 3.18
7297 7507 2.945668 GGAGTGAGCTTTGTTGTTCTGT 59.054 45.455 0.00 0.00 0.00 3.41
7298 7508 2.291741 GGGAGTGAGCTTTGTTGTTCTG 59.708 50.000 0.00 0.00 0.00 3.02
7299 7509 2.576615 GGGAGTGAGCTTTGTTGTTCT 58.423 47.619 0.00 0.00 0.00 3.01
7300 7510 1.264288 CGGGAGTGAGCTTTGTTGTTC 59.736 52.381 0.00 0.00 0.00 3.18
7322 7534 1.889105 CCCGCGGATCAAGACCATG 60.889 63.158 30.73 0.00 0.00 3.66
7342 7554 4.862823 GGAGGGAGGGAGGGTCGG 62.863 77.778 0.00 0.00 0.00 4.79
7343 7555 4.862823 GGGAGGGAGGGAGGGTCG 62.863 77.778 0.00 0.00 0.00 4.79
7344 7556 4.500826 GGGGAGGGAGGGAGGGTC 62.501 77.778 0.00 0.00 0.00 4.46
7359 7571 3.700350 AGGGGGAGAGAGTGGGGG 61.700 72.222 0.00 0.00 0.00 5.40
7360 7572 2.041405 GAGGGGGAGAGAGTGGGG 60.041 72.222 0.00 0.00 0.00 4.96
7361 7573 2.041405 GGAGGGGGAGAGAGTGGG 60.041 72.222 0.00 0.00 0.00 4.61
7362 7574 2.041405 GGGAGGGGGAGAGAGTGG 60.041 72.222 0.00 0.00 0.00 4.00
7363 7575 2.041405 GGGGAGGGGGAGAGAGTG 60.041 72.222 0.00 0.00 0.00 3.51
7364 7576 3.369388 GGGGGAGGGGGAGAGAGT 61.369 72.222 0.00 0.00 0.00 3.24
7365 7577 3.039526 AGGGGGAGGGGGAGAGAG 61.040 72.222 0.00 0.00 0.00 3.20
7366 7578 3.036959 GAGGGGGAGGGGGAGAGA 61.037 72.222 0.00 0.00 0.00 3.10
7367 7579 4.179599 GGAGGGGGAGGGGGAGAG 62.180 77.778 0.00 0.00 0.00 3.20
7374 7586 4.179599 GAGGGAGGGAGGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
7375 7587 4.179599 GGAGGGAGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
7378 7590 4.179599 GAGGGAGGGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
7379 7591 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
7380 7592 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
7381 7593 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
7382 7594 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
7383 7595 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
7384 7596 2.612251 GAGAGGGAGGGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
7385 7597 1.598856 AAGGAGAGGGAGGGAGGGAG 61.599 65.000 0.00 0.00 0.00 4.30
7386 7598 1.162951 AAAGGAGAGGGAGGGAGGGA 61.163 60.000 0.00 0.00 0.00 4.20
7387 7599 0.692756 GAAAGGAGAGGGAGGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
7388 7600 0.341609 AGAAAGGAGAGGGAGGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
7389 7601 1.290732 AGAGAAAGGAGAGGGAGGGAG 59.709 57.143 0.00 0.00 0.00 4.30
7390 7602 1.289530 GAGAGAAAGGAGAGGGAGGGA 59.710 57.143 0.00 0.00 0.00 4.20
7391 7603 1.007721 TGAGAGAAAGGAGAGGGAGGG 59.992 57.143 0.00 0.00 0.00 4.30
7392 7604 2.107366 GTGAGAGAAAGGAGAGGGAGG 58.893 57.143 0.00 0.00 0.00 4.30
7393 7605 1.748493 CGTGAGAGAAAGGAGAGGGAG 59.252 57.143 0.00 0.00 0.00 4.30
7394 7606 1.617263 CCGTGAGAGAAAGGAGAGGGA 60.617 57.143 0.00 0.00 0.00 4.20
7395 7607 0.820871 CCGTGAGAGAAAGGAGAGGG 59.179 60.000 0.00 0.00 0.00 4.30
7396 7608 0.820871 CCCGTGAGAGAAAGGAGAGG 59.179 60.000 0.00 0.00 0.00 3.69
7397 7609 0.174617 GCCCGTGAGAGAAAGGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
7398 7610 0.541998 TGCCCGTGAGAGAAAGGAGA 60.542 55.000 0.00 0.00 0.00 3.71
7399 7611 0.539051 ATGCCCGTGAGAGAAAGGAG 59.461 55.000 0.00 0.00 0.00 3.69
7400 7612 0.250234 CATGCCCGTGAGAGAAAGGA 59.750 55.000 0.00 0.00 0.00 3.36
7401 7613 0.745845 CCATGCCCGTGAGAGAAAGG 60.746 60.000 0.00 0.00 0.00 3.11
7402 7614 0.036010 ACCATGCCCGTGAGAGAAAG 60.036 55.000 0.00 0.00 0.00 2.62
7403 7615 1.207089 CTACCATGCCCGTGAGAGAAA 59.793 52.381 0.00 0.00 0.00 2.52
7404 7616 0.824109 CTACCATGCCCGTGAGAGAA 59.176 55.000 0.00 0.00 0.00 2.87
7405 7617 0.033503 TCTACCATGCCCGTGAGAGA 60.034 55.000 0.00 0.00 0.00 3.10
7406 7618 0.387202 CTCTACCATGCCCGTGAGAG 59.613 60.000 0.00 0.00 0.00 3.20
7407 7619 1.043116 CCTCTACCATGCCCGTGAGA 61.043 60.000 0.00 0.00 0.00 3.27
7408 7620 1.330655 ACCTCTACCATGCCCGTGAG 61.331 60.000 0.00 0.00 0.00 3.51
7409 7621 1.305802 ACCTCTACCATGCCCGTGA 60.306 57.895 0.00 0.00 0.00 4.35
7410 7622 1.153369 CACCTCTACCATGCCCGTG 60.153 63.158 0.00 0.00 0.00 4.94
7411 7623 2.367202 CCACCTCTACCATGCCCGT 61.367 63.158 0.00 0.00 0.00 5.28
7412 7624 2.505982 CCACCTCTACCATGCCCG 59.494 66.667 0.00 0.00 0.00 6.13
7413 7625 2.193248 GCCACCTCTACCATGCCC 59.807 66.667 0.00 0.00 0.00 5.36
7414 7626 2.203070 CGCCACCTCTACCATGCC 60.203 66.667 0.00 0.00 0.00 4.40
7415 7627 2.203070 CCGCCACCTCTACCATGC 60.203 66.667 0.00 0.00 0.00 4.06
7416 7628 2.203070 GCCGCCACCTCTACCATG 60.203 66.667 0.00 0.00 0.00 3.66
7417 7629 2.365635 AGCCGCCACCTCTACCAT 60.366 61.111 0.00 0.00 0.00 3.55
7418 7630 3.075005 GAGCCGCCACCTCTACCA 61.075 66.667 0.00 0.00 0.00 3.25
7419 7631 2.760385 AGAGCCGCCACCTCTACC 60.760 66.667 0.00 0.00 37.88 3.18
7420 7632 2.496817 CAGAGCCGCCACCTCTAC 59.503 66.667 0.00 0.00 37.57 2.59
7421 7633 2.589610 ATCCAGAGCCGCCACCTCTA 62.590 60.000 0.00 0.00 37.57 2.43
7422 7634 3.991924 ATCCAGAGCCGCCACCTCT 62.992 63.158 0.00 0.00 40.17 3.69
7423 7635 3.453070 GATCCAGAGCCGCCACCTC 62.453 68.421 0.00 0.00 0.00 3.85
7424 7636 3.474570 GATCCAGAGCCGCCACCT 61.475 66.667 0.00 0.00 0.00 4.00
7425 7637 4.554036 GGATCCAGAGCCGCCACC 62.554 72.222 6.95 0.00 0.00 4.61
7426 7638 2.615227 AATGGATCCAGAGCCGCCAC 62.615 60.000 21.33 0.00 40.42 5.01
7427 7639 2.377810 AATGGATCCAGAGCCGCCA 61.378 57.895 21.33 0.00 40.42 5.69
7428 7640 1.895707 CAATGGATCCAGAGCCGCC 60.896 63.158 21.33 0.00 40.42 6.13
7429 7641 1.895707 CCAATGGATCCAGAGCCGC 60.896 63.158 21.33 0.00 40.42 6.53
7430 7642 0.816825 CACCAATGGATCCAGAGCCG 60.817 60.000 21.33 7.95 40.42 5.52
7431 7643 0.548031 TCACCAATGGATCCAGAGCC 59.452 55.000 21.33 0.00 37.40 4.70
7432 7644 2.295885 CTTCACCAATGGATCCAGAGC 58.704 52.381 21.33 0.00 0.00 4.09
7433 7645 2.507058 TCCTTCACCAATGGATCCAGAG 59.493 50.000 21.33 14.39 0.00 3.35
7434 7646 2.507058 CTCCTTCACCAATGGATCCAGA 59.493 50.000 21.33 8.61 0.00 3.86
7435 7647 2.240667 ACTCCTTCACCAATGGATCCAG 59.759 50.000 21.33 9.32 0.00 3.86
7436 7648 2.025981 CACTCCTTCACCAATGGATCCA 60.026 50.000 18.88 18.88 0.00 3.41
7437 7649 2.648059 CACTCCTTCACCAATGGATCC 58.352 52.381 6.16 4.20 0.00 3.36
7438 7650 2.025887 ACCACTCCTTCACCAATGGATC 60.026 50.000 6.16 0.00 0.00 3.36
7439 7651 1.995542 ACCACTCCTTCACCAATGGAT 59.004 47.619 6.16 0.00 0.00 3.41
7440 7652 1.073763 CACCACTCCTTCACCAATGGA 59.926 52.381 6.16 0.00 0.00 3.41
7441 7653 1.538047 CACCACTCCTTCACCAATGG 58.462 55.000 0.00 0.00 0.00 3.16
7442 7654 1.538047 CCACCACTCCTTCACCAATG 58.462 55.000 0.00 0.00 0.00 2.82
7443 7655 0.405585 CCCACCACTCCTTCACCAAT 59.594 55.000 0.00 0.00 0.00 3.16
7444 7656 1.715019 CCCCACCACTCCTTCACCAA 61.715 60.000 0.00 0.00 0.00 3.67
7445 7657 2.153401 CCCCACCACTCCTTCACCA 61.153 63.158 0.00 0.00 0.00 4.17
7446 7658 2.757077 CCCCACCACTCCTTCACC 59.243 66.667 0.00 0.00 0.00 4.02
7447 7659 1.846124 TCCCCCACCACTCCTTCAC 60.846 63.158 0.00 0.00 0.00 3.18
7448 7660 1.846124 GTCCCCCACCACTCCTTCA 60.846 63.158 0.00 0.00 0.00 3.02
7449 7661 1.423794 TTGTCCCCCACCACTCCTTC 61.424 60.000 0.00 0.00 0.00 3.46
7450 7662 0.996762 TTTGTCCCCCACCACTCCTT 60.997 55.000 0.00 0.00 0.00 3.36
7451 7663 1.386772 TTTGTCCCCCACCACTCCT 60.387 57.895 0.00 0.00 0.00 3.69
7452 7664 1.074951 CTTTGTCCCCCACCACTCC 59.925 63.158 0.00 0.00 0.00 3.85
7453 7665 0.537371 CACTTTGTCCCCCACCACTC 60.537 60.000 0.00 0.00 0.00 3.51
7454 7666 1.536676 CACTTTGTCCCCCACCACT 59.463 57.895 0.00 0.00 0.00 4.00
7455 7667 1.530655 CCACTTTGTCCCCCACCAC 60.531 63.158 0.00 0.00 0.00 4.16
7456 7668 2.009882 ACCACTTTGTCCCCCACCA 61.010 57.895 0.00 0.00 0.00 4.17
7457 7669 1.530655 CACCACTTTGTCCCCCACC 60.531 63.158 0.00 0.00 0.00 4.61
7458 7670 0.106419 TTCACCACTTTGTCCCCCAC 60.106 55.000 0.00 0.00 0.00 4.61
7459 7671 0.106419 GTTCACCACTTTGTCCCCCA 60.106 55.000 0.00 0.00 0.00 4.96
7460 7672 0.106419 TGTTCACCACTTTGTCCCCC 60.106 55.000 0.00 0.00 0.00 5.40
7461 7673 1.133915 TCTGTTCACCACTTTGTCCCC 60.134 52.381 0.00 0.00 0.00 4.81
7462 7674 2.222027 CTCTGTTCACCACTTTGTCCC 58.778 52.381 0.00 0.00 0.00 4.46
7463 7675 1.604278 GCTCTGTTCACCACTTTGTCC 59.396 52.381 0.00 0.00 0.00 4.02
7464 7676 1.604278 GGCTCTGTTCACCACTTTGTC 59.396 52.381 0.00 0.00 0.00 3.18
7465 7677 1.680338 GGCTCTGTTCACCACTTTGT 58.320 50.000 0.00 0.00 0.00 2.83
7466 7678 0.588252 CGGCTCTGTTCACCACTTTG 59.412 55.000 0.00 0.00 0.00 2.77
7467 7679 0.535102 CCGGCTCTGTTCACCACTTT 60.535 55.000 0.00 0.00 0.00 2.66
7468 7680 1.071471 CCGGCTCTGTTCACCACTT 59.929 57.895 0.00 0.00 0.00 3.16
7469 7681 2.743718 CCGGCTCTGTTCACCACT 59.256 61.111 0.00 0.00 0.00 4.00
7470 7682 2.358737 CCCGGCTCTGTTCACCAC 60.359 66.667 0.00 0.00 0.00 4.16
7471 7683 4.329545 GCCCGGCTCTGTTCACCA 62.330 66.667 0.71 0.00 0.00 4.17
7472 7684 4.329545 TGCCCGGCTCTGTTCACC 62.330 66.667 11.61 0.00 0.00 4.02
7473 7685 3.050275 GTGCCCGGCTCTGTTCAC 61.050 66.667 11.61 0.00 0.00 3.18
7474 7686 4.329545 GGTGCCCGGCTCTGTTCA 62.330 66.667 11.61 0.00 0.00 3.18
7475 7687 3.553095 AAGGTGCCCGGCTCTGTTC 62.553 63.158 11.61 0.00 0.00 3.18
7476 7688 3.570212 AAGGTGCCCGGCTCTGTT 61.570 61.111 11.61 2.63 0.00 3.16
7477 7689 4.335647 CAAGGTGCCCGGCTCTGT 62.336 66.667 11.61 0.00 0.00 3.41
7484 7696 3.976701 CTACCAGCCAAGGTGCCCG 62.977 68.421 3.52 0.00 43.14 6.13
7485 7697 2.044946 CTACCAGCCAAGGTGCCC 60.045 66.667 3.52 0.00 43.14 5.36
7486 7698 2.044946 CCTACCAGCCAAGGTGCC 60.045 66.667 3.52 0.00 43.14 5.01
7487 7699 2.044946 CCCTACCAGCCAAGGTGC 60.045 66.667 3.52 0.00 43.14 5.01
7488 7700 2.677228 CCCCTACCAGCCAAGGTG 59.323 66.667 3.52 0.00 43.14 4.00
7489 7701 2.614013 CCCCCTACCAGCCAAGGT 60.614 66.667 0.00 0.00 45.72 3.50
7504 7716 3.846430 CCTCTCGTAACGGCCCCC 61.846 72.222 0.00 0.00 0.00 5.40
7505 7717 3.846430 CCCTCTCGTAACGGCCCC 61.846 72.222 0.00 0.00 0.00 5.80
7506 7718 2.294132 CTTCCCTCTCGTAACGGCCC 62.294 65.000 0.00 0.00 0.00 5.80
7507 7719 1.141234 CTTCCCTCTCGTAACGGCC 59.859 63.158 0.00 0.00 0.00 6.13
7508 7720 0.745468 ATCTTCCCTCTCGTAACGGC 59.255 55.000 0.00 0.00 0.00 5.68
7509 7721 2.165845 ACAATCTTCCCTCTCGTAACGG 59.834 50.000 0.00 0.00 0.00 4.44
7510 7722 3.179830 CACAATCTTCCCTCTCGTAACG 58.820 50.000 0.00 0.00 0.00 3.18
7511 7723 2.930682 GCACAATCTTCCCTCTCGTAAC 59.069 50.000 0.00 0.00 0.00 2.50
7512 7724 2.832129 AGCACAATCTTCCCTCTCGTAA 59.168 45.455 0.00 0.00 0.00 3.18
7513 7725 2.457598 AGCACAATCTTCCCTCTCGTA 58.542 47.619 0.00 0.00 0.00 3.43
7514 7726 1.270907 AGCACAATCTTCCCTCTCGT 58.729 50.000 0.00 0.00 0.00 4.18
7515 7727 3.742433 ATAGCACAATCTTCCCTCTCG 57.258 47.619 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.