Multiple sequence alignment - TraesCS1B01G285500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G285500 | chr1B | 100.000 | 1630 | 0 | 0 | 827 | 2456 | 496561459 | 496559830 | 0.000000e+00 | 3011 |
1 | TraesCS1B01G285500 | chr1B | 100.000 | 536 | 0 | 0 | 1 | 536 | 496562285 | 496561750 | 0.000000e+00 | 990 |
2 | TraesCS1B01G285500 | chr1B | 90.252 | 318 | 28 | 3 | 2140 | 2456 | 496559809 | 496560124 | 1.760000e-111 | 412 |
3 | TraesCS1B01G285500 | chr1D | 92.024 | 1354 | 64 | 24 | 827 | 2143 | 371750259 | 371748913 | 0.000000e+00 | 1862 |
4 | TraesCS1B01G285500 | chr1D | 90.364 | 550 | 31 | 4 | 1 | 536 | 371750790 | 371750249 | 0.000000e+00 | 702 |
5 | TraesCS1B01G285500 | chr1A | 89.579 | 1353 | 89 | 27 | 827 | 2143 | 471488829 | 471487493 | 0.000000e+00 | 1670 |
6 | TraesCS1B01G285500 | chr1A | 88.267 | 554 | 42 | 11 | 1 | 535 | 471489369 | 471488820 | 2.060000e-180 | 641 |
7 | TraesCS1B01G285500 | chr1A | 87.988 | 333 | 33 | 5 | 2130 | 2456 | 27247559 | 27247890 | 1.070000e-103 | 387 |
8 | TraesCS1B01G285500 | chr7A | 89.506 | 324 | 29 | 5 | 2133 | 2454 | 41424868 | 41424548 | 2.940000e-109 | 405 |
9 | TraesCS1B01G285500 | chr7A | 89.655 | 319 | 28 | 3 | 2138 | 2456 | 12118927 | 12118614 | 3.800000e-108 | 401 |
10 | TraesCS1B01G285500 | chr7A | 88.889 | 315 | 30 | 2 | 2139 | 2453 | 12118591 | 12118900 | 1.380000e-102 | 383 |
11 | TraesCS1B01G285500 | chr5B | 84.923 | 325 | 36 | 9 | 2135 | 2456 | 677663549 | 677663863 | 1.420000e-82 | 316 |
12 | TraesCS1B01G285500 | chr5B | 85.174 | 317 | 35 | 9 | 2140 | 2454 | 677663885 | 677663579 | 5.100000e-82 | 315 |
13 | TraesCS1B01G285500 | chr2A | 84.326 | 319 | 46 | 4 | 2140 | 2456 | 382320757 | 382321073 | 2.370000e-80 | 309 |
14 | TraesCS1B01G285500 | chr2A | 84.539 | 304 | 41 | 6 | 2151 | 2452 | 382321083 | 382320784 | 1.850000e-76 | 296 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G285500 | chr1B | 496559830 | 496562285 | 2455 | True | 2000.5 | 3011 | 100.000 | 1 | 2456 | 2 | chr1B.!!$R1 | 2455 |
1 | TraesCS1B01G285500 | chr1D | 371748913 | 371750790 | 1877 | True | 1282.0 | 1862 | 91.194 | 1 | 2143 | 2 | chr1D.!!$R1 | 2142 |
2 | TraesCS1B01G285500 | chr1A | 471487493 | 471489369 | 1876 | True | 1155.5 | 1670 | 88.923 | 1 | 2143 | 2 | chr1A.!!$R1 | 2142 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
128 | 134 | 0.178992 | CCACCACCTTCTTGGCTTCA | 60.179 | 55.0 | 0.0 | 0.0 | 40.77 | 3.02 | F |
1108 | 1141 | 0.179200 | CATCGGTTACGCCAAGCAAC | 60.179 | 55.0 | 0.0 | 0.0 | 40.69 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1356 | 1389 | 0.178767 | CGCCCATCTGGTTCTCATCA | 59.821 | 55.000 | 0.0 | 0.0 | 36.04 | 3.07 | R |
2288 | 2360 | 1.064091 | GGTAGTACTCCCTCCGTTCCT | 60.064 | 57.143 | 0.0 | 0.0 | 0.00 | 3.36 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
85 | 91 | 1.577922 | CCGTCTGTTTCGTCGGAGA | 59.422 | 57.895 | 0.00 | 0.00 | 44.86 | 3.71 |
117 | 123 | 3.075005 | CCCGTCGATCCACCACCT | 61.075 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
122 | 128 | 1.726853 | GTCGATCCACCACCTTCTTG | 58.273 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
128 | 134 | 0.178992 | CCACCACCTTCTTGGCTTCA | 60.179 | 55.000 | 0.00 | 0.00 | 40.77 | 3.02 |
137 | 143 | 3.626670 | CCTTCTTGGCTTCACTGATGATC | 59.373 | 47.826 | 0.00 | 0.00 | 33.85 | 2.92 |
195 | 208 | 2.488952 | TGTTTGTTGCTGTAGATCGCA | 58.511 | 42.857 | 0.00 | 0.00 | 0.00 | 5.10 |
302 | 325 | 1.614850 | GGTCGATAGGTTTTTGGCCCA | 60.615 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
328 | 351 | 7.695480 | AGCACTATACTACTGTCCATATCAG | 57.305 | 40.000 | 0.00 | 0.00 | 38.68 | 2.90 |
334 | 357 | 4.219115 | ACTACTGTCCATATCAGGGTGAG | 58.781 | 47.826 | 0.00 | 0.00 | 37.25 | 3.51 |
360 | 383 | 1.128188 | GGAGTGGGGACAGAACTGGT | 61.128 | 60.000 | 6.76 | 0.00 | 44.46 | 4.00 |
368 | 391 | 3.568430 | GGGGACAGAACTGGTTTTTGTAG | 59.432 | 47.826 | 6.76 | 0.00 | 34.19 | 2.74 |
413 | 436 | 8.622157 | GTTATTAGGGGCTTCTAATTTGAACTC | 58.378 | 37.037 | 15.00 | 0.00 | 39.71 | 3.01 |
438 | 461 | 3.164268 | TCAATTGGGACAGTGATTTGGG | 58.836 | 45.455 | 5.42 | 0.00 | 42.39 | 4.12 |
455 | 478 | 0.604511 | GGGGTTGGTGTTGGTCTACG | 60.605 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
480 | 511 | 4.424626 | ACAATCACATACTCTGCTGTACG | 58.575 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
530 | 561 | 4.574013 | CCACTCTTAAGCTTTGCAGATAGG | 59.426 | 45.833 | 3.20 | 5.56 | 0.00 | 2.57 |
531 | 562 | 5.423015 | CACTCTTAAGCTTTGCAGATAGGA | 58.577 | 41.667 | 3.20 | 0.00 | 0.00 | 2.94 |
532 | 563 | 5.293079 | CACTCTTAAGCTTTGCAGATAGGAC | 59.707 | 44.000 | 3.20 | 0.00 | 0.00 | 3.85 |
533 | 564 | 5.188751 | ACTCTTAAGCTTTGCAGATAGGACT | 59.811 | 40.000 | 3.20 | 0.00 | 0.00 | 3.85 |
534 | 565 | 6.381420 | ACTCTTAAGCTTTGCAGATAGGACTA | 59.619 | 38.462 | 3.20 | 0.00 | 0.00 | 2.59 |
535 | 566 | 7.093289 | ACTCTTAAGCTTTGCAGATAGGACTAA | 60.093 | 37.037 | 3.20 | 0.00 | 0.00 | 2.24 |
987 | 1020 | 8.989653 | TTTCGACCTAATTTTGTGTTTTCTTT | 57.010 | 26.923 | 0.00 | 0.00 | 0.00 | 2.52 |
988 | 1021 | 7.979115 | TCGACCTAATTTTGTGTTTTCTTTG | 57.021 | 32.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1108 | 1141 | 0.179200 | CATCGGTTACGCCAAGCAAC | 60.179 | 55.000 | 0.00 | 0.00 | 40.69 | 4.17 |
1123 | 1156 | 2.456577 | AGCAACCACCAAACTTGTCTT | 58.543 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
1158 | 1191 | 0.839946 | ACAAGTTCAGGGTGTCTGCT | 59.160 | 50.000 | 0.00 | 0.00 | 43.06 | 4.24 |
1206 | 1239 | 2.579201 | CCGGACGGTGAAGAGCAT | 59.421 | 61.111 | 0.00 | 0.00 | 0.00 | 3.79 |
1239 | 1272 | 3.264450 | CCCCTGAAGACACCTACATTCTT | 59.736 | 47.826 | 0.00 | 0.00 | 32.14 | 2.52 |
1374 | 1407 | 2.295885 | CTTGATGAGAACCAGATGGGC | 58.704 | 52.381 | 3.48 | 0.00 | 42.05 | 5.36 |
1398 | 1431 | 3.118905 | GGATACCTTCTGACCTGCATC | 57.881 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1413 | 1446 | 0.183492 | GCATCTCATACCCCAAGGCA | 59.817 | 55.000 | 0.00 | 0.00 | 36.11 | 4.75 |
1469 | 1530 | 8.221766 | GGAACTCTACTAATTGTTGAAGTTTCG | 58.778 | 37.037 | 0.00 | 0.00 | 30.68 | 3.46 |
1480 | 1541 | 3.201353 | TGAAGTTTCGTGGTGGATTCA | 57.799 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
1510 | 1574 | 5.221342 | CGGTTGCCTTCTGTTATCTAGAGAT | 60.221 | 44.000 | 0.00 | 0.00 | 38.51 | 2.75 |
1524 | 1588 | 1.650528 | AGAGATATGGCTAGGTGGGC | 58.349 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1535 | 1599 | 2.872732 | CTAGGTGGGCGTATCTTCCTA | 58.127 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
1537 | 1601 | 1.217183 | AGGTGGGCGTATCTTCCTAGA | 59.783 | 52.381 | 0.00 | 0.00 | 34.21 | 2.43 |
1543 | 1607 | 4.202223 | TGGGCGTATCTTCCTAGAAATCAC | 60.202 | 45.833 | 0.00 | 0.00 | 33.20 | 3.06 |
1545 | 1609 | 5.453480 | GGGCGTATCTTCCTAGAAATCACTT | 60.453 | 44.000 | 0.00 | 0.00 | 33.20 | 3.16 |
1547 | 1611 | 6.273825 | GCGTATCTTCCTAGAAATCACTTCA | 58.726 | 40.000 | 0.00 | 0.00 | 36.40 | 3.02 |
1559 | 1623 | 7.211966 | AGAAATCACTTCAGTCTTTTGATGG | 57.788 | 36.000 | 0.00 | 0.00 | 36.40 | 3.51 |
1566 | 1630 | 3.599343 | TCAGTCTTTTGATGGGATCGTG | 58.401 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
1567 | 1631 | 3.260632 | TCAGTCTTTTGATGGGATCGTGA | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
1730 | 1799 | 0.459489 | TTTGGCCACTCTGTTTGCAC | 59.541 | 50.000 | 3.88 | 0.00 | 0.00 | 4.57 |
1732 | 1801 | 0.819259 | TGGCCACTCTGTTTGCACTC | 60.819 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1774 | 1843 | 4.381505 | GGATGTCAGGAGTTCAGAAGTCTC | 60.382 | 50.000 | 16.19 | 5.28 | 0.00 | 3.36 |
1791 | 1860 | 8.669243 | CAGAAGTCTCAACTTTTTAGTCTTTGT | 58.331 | 33.333 | 0.00 | 0.00 | 45.80 | 2.83 |
2001 | 2072 | 3.857010 | GCCAATTCCAACTTTCCAAGTCG | 60.857 | 47.826 | 0.00 | 0.00 | 41.91 | 4.18 |
2006 | 2077 | 1.333791 | CCAACTTTCCAAGTCGCGTTC | 60.334 | 52.381 | 5.77 | 0.31 | 41.91 | 3.95 |
2072 | 2144 | 9.453572 | TGTTCATGCTCTATCTTTCAGTTAAAT | 57.546 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2100 | 2172 | 3.547054 | ACTACCAACTGAAACGGTTCA | 57.453 | 42.857 | 16.40 | 16.40 | 41.57 | 3.18 |
2127 | 2199 | 3.264450 | AGGTTCCTTCCAGTAATCCAGTG | 59.736 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
2144 | 2216 | 7.986085 | ATCCAGTGCACATAATTTATACTCC | 57.014 | 36.000 | 21.04 | 0.00 | 0.00 | 3.85 |
2145 | 2217 | 6.296026 | TCCAGTGCACATAATTTATACTCCC | 58.704 | 40.000 | 21.04 | 0.00 | 0.00 | 4.30 |
2146 | 2218 | 6.101150 | TCCAGTGCACATAATTTATACTCCCT | 59.899 | 38.462 | 21.04 | 0.00 | 0.00 | 4.20 |
2147 | 2219 | 6.428159 | CCAGTGCACATAATTTATACTCCCTC | 59.572 | 42.308 | 21.04 | 0.00 | 0.00 | 4.30 |
2148 | 2220 | 6.428159 | CAGTGCACATAATTTATACTCCCTCC | 59.572 | 42.308 | 21.04 | 0.00 | 0.00 | 4.30 |
2149 | 2221 | 5.408604 | GTGCACATAATTTATACTCCCTCCG | 59.591 | 44.000 | 13.17 | 0.00 | 0.00 | 4.63 |
2150 | 2222 | 5.071250 | TGCACATAATTTATACTCCCTCCGT | 59.929 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2151 | 2223 | 5.995897 | GCACATAATTTATACTCCCTCCGTT | 59.004 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2152 | 2224 | 6.147328 | GCACATAATTTATACTCCCTCCGTTC | 59.853 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
2153 | 2225 | 6.365247 | CACATAATTTATACTCCCTCCGTTCG | 59.635 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
2154 | 2226 | 6.041296 | ACATAATTTATACTCCCTCCGTTCGT | 59.959 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2155 | 2227 | 7.231317 | ACATAATTTATACTCCCTCCGTTCGTA | 59.769 | 37.037 | 0.00 | 0.00 | 0.00 | 3.43 |
2156 | 2228 | 6.469782 | AATTTATACTCCCTCCGTTCGTAA | 57.530 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2157 | 2229 | 5.913137 | TTTATACTCCCTCCGTTCGTAAA | 57.087 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
2158 | 2230 | 6.469782 | TTTATACTCCCTCCGTTCGTAAAT | 57.530 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2159 | 2231 | 7.581213 | TTTATACTCCCTCCGTTCGTAAATA | 57.419 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2160 | 2232 | 7.765695 | TTATACTCCCTCCGTTCGTAAATAT | 57.234 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2161 | 2233 | 6.661304 | ATACTCCCTCCGTTCGTAAATATT | 57.339 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
2162 | 2234 | 5.349061 | ACTCCCTCCGTTCGTAAATATTT | 57.651 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
2163 | 2235 | 5.114081 | ACTCCCTCCGTTCGTAAATATTTG | 58.886 | 41.667 | 11.05 | 0.00 | 0.00 | 2.32 |
2164 | 2236 | 5.088680 | TCCCTCCGTTCGTAAATATTTGT | 57.911 | 39.130 | 11.05 | 0.00 | 0.00 | 2.83 |
2165 | 2237 | 5.111293 | TCCCTCCGTTCGTAAATATTTGTC | 58.889 | 41.667 | 11.05 | 3.49 | 0.00 | 3.18 |
2166 | 2238 | 5.105228 | TCCCTCCGTTCGTAAATATTTGTCT | 60.105 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
2167 | 2239 | 5.583457 | CCCTCCGTTCGTAAATATTTGTCTT | 59.417 | 40.000 | 11.05 | 0.00 | 0.00 | 3.01 |
2168 | 2240 | 6.093082 | CCCTCCGTTCGTAAATATTTGTCTTT | 59.907 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
2169 | 2241 | 7.178074 | CCTCCGTTCGTAAATATTTGTCTTTC | 58.822 | 38.462 | 11.05 | 0.00 | 0.00 | 2.62 |
2170 | 2242 | 7.064253 | CCTCCGTTCGTAAATATTTGTCTTTCT | 59.936 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
2171 | 2243 | 8.984891 | TCCGTTCGTAAATATTTGTCTTTCTA | 57.015 | 30.769 | 11.05 | 0.00 | 0.00 | 2.10 |
2172 | 2244 | 9.079833 | TCCGTTCGTAAATATTTGTCTTTCTAG | 57.920 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
2173 | 2245 | 7.844653 | CCGTTCGTAAATATTTGTCTTTCTAGC | 59.155 | 37.037 | 11.05 | 0.00 | 0.00 | 3.42 |
2174 | 2246 | 7.574481 | CGTTCGTAAATATTTGTCTTTCTAGCG | 59.426 | 37.037 | 11.05 | 0.00 | 0.00 | 4.26 |
2175 | 2247 | 8.589629 | GTTCGTAAATATTTGTCTTTCTAGCGA | 58.410 | 33.333 | 11.05 | 3.14 | 0.00 | 4.93 |
2176 | 2248 | 8.867112 | TCGTAAATATTTGTCTTTCTAGCGAT | 57.133 | 30.769 | 11.05 | 0.00 | 0.00 | 4.58 |
2177 | 2249 | 9.309516 | TCGTAAATATTTGTCTTTCTAGCGATT | 57.690 | 29.630 | 11.05 | 0.00 | 0.00 | 3.34 |
2178 | 2250 | 9.916397 | CGTAAATATTTGTCTTTCTAGCGATTT | 57.084 | 29.630 | 11.05 | 0.00 | 0.00 | 2.17 |
2182 | 2254 | 9.774742 | AATATTTGTCTTTCTAGCGATTTCAAC | 57.225 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2183 | 2255 | 6.612247 | TTTGTCTTTCTAGCGATTTCAACA | 57.388 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2184 | 2256 | 6.612247 | TTGTCTTTCTAGCGATTTCAACAA | 57.388 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2185 | 2257 | 6.228273 | TGTCTTTCTAGCGATTTCAACAAG | 57.772 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
2186 | 2258 | 5.758296 | TGTCTTTCTAGCGATTTCAACAAGT | 59.242 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2187 | 2259 | 6.074005 | GTCTTTCTAGCGATTTCAACAAGTG | 58.926 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2188 | 2260 | 5.989168 | TCTTTCTAGCGATTTCAACAAGTGA | 59.011 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2189 | 2261 | 5.591643 | TTCTAGCGATTTCAACAAGTGAC | 57.408 | 39.130 | 0.00 | 0.00 | 35.39 | 3.67 |
2190 | 2262 | 4.883083 | TCTAGCGATTTCAACAAGTGACT | 58.117 | 39.130 | 0.00 | 0.00 | 35.39 | 3.41 |
2191 | 2263 | 6.020971 | TCTAGCGATTTCAACAAGTGACTA | 57.979 | 37.500 | 0.00 | 0.00 | 35.39 | 2.59 |
2192 | 2264 | 4.992381 | AGCGATTTCAACAAGTGACTAC | 57.008 | 40.909 | 0.00 | 0.00 | 35.39 | 2.73 |
2193 | 2265 | 4.377021 | AGCGATTTCAACAAGTGACTACA | 58.623 | 39.130 | 0.00 | 0.00 | 35.39 | 2.74 |
2194 | 2266 | 4.997395 | AGCGATTTCAACAAGTGACTACAT | 59.003 | 37.500 | 0.00 | 0.00 | 35.39 | 2.29 |
2195 | 2267 | 6.163476 | AGCGATTTCAACAAGTGACTACATA | 58.837 | 36.000 | 0.00 | 0.00 | 35.39 | 2.29 |
2196 | 2268 | 6.090898 | AGCGATTTCAACAAGTGACTACATAC | 59.909 | 38.462 | 0.00 | 0.00 | 35.39 | 2.39 |
2197 | 2269 | 6.458503 | CGATTTCAACAAGTGACTACATACG | 58.541 | 40.000 | 0.00 | 0.00 | 35.39 | 3.06 |
2198 | 2270 | 6.307077 | CGATTTCAACAAGTGACTACATACGA | 59.693 | 38.462 | 0.00 | 0.00 | 35.39 | 3.43 |
2199 | 2271 | 7.148869 | CGATTTCAACAAGTGACTACATACGAA | 60.149 | 37.037 | 0.00 | 0.00 | 35.39 | 3.85 |
2200 | 2272 | 7.402811 | TTTCAACAAGTGACTACATACGAAG | 57.597 | 36.000 | 0.00 | 0.00 | 35.39 | 3.79 |
2201 | 2273 | 4.921515 | TCAACAAGTGACTACATACGAAGC | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2202 | 2274 | 4.514781 | ACAAGTGACTACATACGAAGCA | 57.485 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
2203 | 2275 | 4.878439 | ACAAGTGACTACATACGAAGCAA | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2204 | 2276 | 5.294356 | ACAAGTGACTACATACGAAGCAAA | 58.706 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
2205 | 2277 | 5.756347 | ACAAGTGACTACATACGAAGCAAAA | 59.244 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2206 | 2278 | 6.426937 | ACAAGTGACTACATACGAAGCAAAAT | 59.573 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2207 | 2279 | 6.408858 | AGTGACTACATACGAAGCAAAATG | 57.591 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2208 | 2280 | 6.163476 | AGTGACTACATACGAAGCAAAATGA | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2209 | 2281 | 6.311445 | AGTGACTACATACGAAGCAAAATGAG | 59.689 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2210 | 2282 | 6.090898 | GTGACTACATACGAAGCAAAATGAGT | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2211 | 2283 | 6.090763 | TGACTACATACGAAGCAAAATGAGTG | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2212 | 2284 | 6.163476 | ACTACATACGAAGCAAAATGAGTGA | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2213 | 2285 | 5.940192 | ACATACGAAGCAAAATGAGTGAA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
2214 | 2286 | 6.500684 | ACATACGAAGCAAAATGAGTGAAT | 57.499 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2215 | 2287 | 6.546395 | ACATACGAAGCAAAATGAGTGAATC | 58.454 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2216 | 2288 | 6.372659 | ACATACGAAGCAAAATGAGTGAATCT | 59.627 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2217 | 2289 | 7.549134 | ACATACGAAGCAAAATGAGTGAATCTA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2218 | 2290 | 6.170675 | ACGAAGCAAAATGAGTGAATCTAC | 57.829 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
2219 | 2291 | 5.700832 | ACGAAGCAAAATGAGTGAATCTACA | 59.299 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2220 | 2292 | 6.017933 | CGAAGCAAAATGAGTGAATCTACAC | 58.982 | 40.000 | 0.00 | 0.00 | 40.60 | 2.90 |
2253 | 2325 | 7.956328 | ATGTCTATATACATCCGTATGTGGT | 57.044 | 36.000 | 3.56 | 0.00 | 45.99 | 4.16 |
2255 | 2327 | 8.502105 | TGTCTATATACATCCGTATGTGGTAG | 57.498 | 38.462 | 3.56 | 3.93 | 45.99 | 3.18 |
2256 | 2328 | 8.105197 | TGTCTATATACATCCGTATGTGGTAGT | 58.895 | 37.037 | 3.56 | 0.00 | 45.99 | 2.73 |
2257 | 2329 | 8.610896 | GTCTATATACATCCGTATGTGGTAGTC | 58.389 | 40.741 | 3.56 | 0.00 | 45.99 | 2.59 |
2258 | 2330 | 6.770746 | ATATACATCCGTATGTGGTAGTCC | 57.229 | 41.667 | 3.56 | 0.00 | 45.99 | 3.85 |
2259 | 2331 | 2.742348 | ACATCCGTATGTGGTAGTCCA | 58.258 | 47.619 | 0.00 | 0.00 | 44.79 | 4.02 |
2260 | 2332 | 3.305720 | ACATCCGTATGTGGTAGTCCAT | 58.694 | 45.455 | 0.00 | 0.00 | 44.79 | 3.41 |
2261 | 2333 | 3.709653 | ACATCCGTATGTGGTAGTCCATT | 59.290 | 43.478 | 0.00 | 0.00 | 44.79 | 3.16 |
2262 | 2334 | 4.163458 | ACATCCGTATGTGGTAGTCCATTT | 59.837 | 41.667 | 0.00 | 0.00 | 44.79 | 2.32 |
2263 | 2335 | 5.364446 | ACATCCGTATGTGGTAGTCCATTTA | 59.636 | 40.000 | 0.00 | 0.00 | 44.79 | 1.40 |
2264 | 2336 | 5.936187 | TCCGTATGTGGTAGTCCATTTAA | 57.064 | 39.130 | 0.00 | 0.00 | 46.20 | 1.52 |
2265 | 2337 | 6.297080 | TCCGTATGTGGTAGTCCATTTAAA | 57.703 | 37.500 | 0.00 | 0.00 | 46.20 | 1.52 |
2266 | 2338 | 6.709281 | TCCGTATGTGGTAGTCCATTTAAAA | 58.291 | 36.000 | 0.00 | 0.00 | 46.20 | 1.52 |
2267 | 2339 | 7.340256 | TCCGTATGTGGTAGTCCATTTAAAAT | 58.660 | 34.615 | 0.00 | 0.00 | 46.20 | 1.82 |
2268 | 2340 | 8.484575 | TCCGTATGTGGTAGTCCATTTAAAATA | 58.515 | 33.333 | 0.00 | 0.00 | 46.20 | 1.40 |
2269 | 2341 | 9.280174 | CCGTATGTGGTAGTCCATTTAAAATAT | 57.720 | 33.333 | 0.00 | 0.00 | 46.20 | 1.28 |
2295 | 2367 | 9.595823 | TCTAAGAAGACAAATATTTAGGAACGG | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
2296 | 2368 | 9.595823 | CTAAGAAGACAAATATTTAGGAACGGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
2297 | 2369 | 8.494016 | AAGAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
2298 | 2370 | 7.048512 | AGAAGACAAATATTTAGGAACGGAGG | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2299 | 2371 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2300 | 2372 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2301 | 2373 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2302 | 2374 | 5.191124 | ACAAATATTTAGGAACGGAGGGAGT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2303 | 2375 | 6.384886 | ACAAATATTTAGGAACGGAGGGAGTA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2304 | 2376 | 6.416631 | AATATTTAGGAACGGAGGGAGTAC | 57.583 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2305 | 2377 | 3.463048 | TTTAGGAACGGAGGGAGTACT | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
2306 | 2378 | 4.591321 | TTTAGGAACGGAGGGAGTACTA | 57.409 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
2307 | 2379 | 2.433662 | AGGAACGGAGGGAGTACTAC | 57.566 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2308 | 2380 | 1.064091 | AGGAACGGAGGGAGTACTACC | 60.064 | 57.143 | 17.30 | 17.30 | 0.00 | 3.18 |
2310 | 2382 | 2.173569 | GGAACGGAGGGAGTACTACCTA | 59.826 | 54.545 | 27.44 | 0.00 | 46.12 | 3.08 |
2311 | 2383 | 3.372025 | GGAACGGAGGGAGTACTACCTAA | 60.372 | 52.174 | 27.44 | 0.00 | 46.12 | 2.69 |
2312 | 2384 | 4.273318 | GAACGGAGGGAGTACTACCTAAA | 58.727 | 47.826 | 27.44 | 0.00 | 46.12 | 1.85 |
2313 | 2385 | 4.533001 | ACGGAGGGAGTACTACCTAAAT | 57.467 | 45.455 | 27.44 | 11.95 | 46.12 | 1.40 |
2314 | 2386 | 5.653255 | ACGGAGGGAGTACTACCTAAATA | 57.347 | 43.478 | 27.44 | 0.00 | 46.12 | 1.40 |
2315 | 2387 | 5.380900 | ACGGAGGGAGTACTACCTAAATAC | 58.619 | 45.833 | 27.44 | 13.69 | 46.12 | 1.89 |
2316 | 2388 | 5.133491 | ACGGAGGGAGTACTACCTAAATACT | 59.867 | 44.000 | 27.44 | 2.59 | 46.12 | 2.12 |
2317 | 2389 | 5.704978 | CGGAGGGAGTACTACCTAAATACTC | 59.295 | 48.000 | 27.44 | 12.43 | 46.12 | 2.59 |
2323 | 2395 | 5.629125 | AGTACTACCTAAATACTCCCTCCG | 58.371 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
2324 | 2396 | 4.533001 | ACTACCTAAATACTCCCTCCGT | 57.467 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2325 | 2397 | 4.876580 | ACTACCTAAATACTCCCTCCGTT | 58.123 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
2326 | 2398 | 4.892345 | ACTACCTAAATACTCCCTCCGTTC | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
2327 | 2399 | 3.036819 | ACCTAAATACTCCCTCCGTTCC | 58.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2328 | 2400 | 3.306613 | CCTAAATACTCCCTCCGTTCCT | 58.693 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2329 | 2401 | 4.078980 | ACCTAAATACTCCCTCCGTTCCTA | 60.079 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
2330 | 2402 | 4.897670 | CCTAAATACTCCCTCCGTTCCTAA | 59.102 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
2331 | 2403 | 5.364735 | CCTAAATACTCCCTCCGTTCCTAAA | 59.635 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2332 | 2404 | 5.970501 | AAATACTCCCTCCGTTCCTAAAT | 57.029 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2333 | 2405 | 7.234166 | CCTAAATACTCCCTCCGTTCCTAAATA | 59.766 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
2334 | 2406 | 7.628501 | AAATACTCCCTCCGTTCCTAAATAT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2335 | 2407 | 7.628501 | AATACTCCCTCCGTTCCTAAATATT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2336 | 2408 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
2337 | 2409 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
2338 | 2410 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
2339 | 2411 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
2340 | 2412 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
2341 | 2413 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
2342 | 2414 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
2343 | 2415 | 7.201705 | CCCTCCGTTCCTAAATATTTGTCTTTC | 60.202 | 40.741 | 11.05 | 0.00 | 0.00 | 2.62 |
2344 | 2416 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTTCT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
2345 | 2417 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTTCTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
2346 | 2418 | 9.595823 | TCCGTTCCTAAATATTTGTCTTTCTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
2347 | 2419 | 9.595823 | CCGTTCCTAAATATTTGTCTTTCTAGA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
2418 | 2490 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
2419 | 2491 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
2420 | 2492 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
2421 | 2493 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
2422 | 2494 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2423 | 2495 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2424 | 2496 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
2425 | 2497 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
2426 | 2498 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
2427 | 2499 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2428 | 2500 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2429 | 2501 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2430 | 2502 | 5.079689 | TCATTTTGCTCCGTATGTAGTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2431 | 2503 | 4.868171 | TCATTTTGCTCCGTATGTAGTCAC | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2432 | 2504 | 4.530710 | TTTTGCTCCGTATGTAGTCACT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2433 | 2505 | 4.530710 | TTTGCTCCGTATGTAGTCACTT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2434 | 2506 | 3.503827 | TGCTCCGTATGTAGTCACTTG | 57.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2435 | 2507 | 2.165641 | TGCTCCGTATGTAGTCACTTGG | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2436 | 2508 | 2.165845 | GCTCCGTATGTAGTCACTTGGT | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2437 | 2509 | 3.770666 | CTCCGTATGTAGTCACTTGGTG | 58.229 | 50.000 | 0.00 | 0.00 | 34.45 | 4.17 |
2438 | 2510 | 3.423749 | TCCGTATGTAGTCACTTGGTGA | 58.576 | 45.455 | 0.00 | 0.00 | 40.50 | 4.02 |
2439 | 2511 | 3.827876 | TCCGTATGTAGTCACTTGGTGAA | 59.172 | 43.478 | 1.77 | 0.00 | 44.49 | 3.18 |
2440 | 2512 | 4.281435 | TCCGTATGTAGTCACTTGGTGAAA | 59.719 | 41.667 | 1.77 | 0.00 | 44.49 | 2.69 |
2441 | 2513 | 5.046878 | TCCGTATGTAGTCACTTGGTGAAAT | 60.047 | 40.000 | 1.77 | 0.00 | 44.49 | 2.17 |
2442 | 2514 | 5.063438 | CCGTATGTAGTCACTTGGTGAAATG | 59.937 | 44.000 | 1.77 | 0.00 | 44.49 | 2.32 |
2443 | 2515 | 5.637810 | CGTATGTAGTCACTTGGTGAAATGT | 59.362 | 40.000 | 1.77 | 0.00 | 44.49 | 2.71 |
2444 | 2516 | 6.183360 | CGTATGTAGTCACTTGGTGAAATGTC | 60.183 | 42.308 | 1.77 | 0.00 | 44.49 | 3.06 |
2445 | 2517 | 5.290493 | TGTAGTCACTTGGTGAAATGTCT | 57.710 | 39.130 | 1.77 | 0.00 | 44.49 | 3.41 |
2446 | 2518 | 6.413783 | TGTAGTCACTTGGTGAAATGTCTA | 57.586 | 37.500 | 1.77 | 0.00 | 44.49 | 2.59 |
2447 | 2519 | 6.455647 | TGTAGTCACTTGGTGAAATGTCTAG | 58.544 | 40.000 | 1.77 | 0.00 | 44.49 | 2.43 |
2448 | 2520 | 5.808366 | AGTCACTTGGTGAAATGTCTAGA | 57.192 | 39.130 | 1.77 | 0.00 | 44.49 | 2.43 |
2449 | 2521 | 6.174720 | AGTCACTTGGTGAAATGTCTAGAA | 57.825 | 37.500 | 0.00 | 0.00 | 44.49 | 2.10 |
2450 | 2522 | 6.591935 | AGTCACTTGGTGAAATGTCTAGAAA | 58.408 | 36.000 | 0.00 | 0.00 | 44.49 | 2.52 |
2451 | 2523 | 6.708054 | AGTCACTTGGTGAAATGTCTAGAAAG | 59.292 | 38.462 | 0.00 | 0.00 | 44.49 | 2.62 |
2452 | 2524 | 6.706270 | GTCACTTGGTGAAATGTCTAGAAAGA | 59.294 | 38.462 | 0.00 | 0.00 | 44.49 | 2.52 |
2453 | 2525 | 6.706270 | TCACTTGGTGAAATGTCTAGAAAGAC | 59.294 | 38.462 | 0.00 | 0.00 | 44.54 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
111 | 117 | 0.846693 | AGTGAAGCCAAGAAGGTGGT | 59.153 | 50.000 | 0.00 | 0.00 | 41.12 | 4.16 |
117 | 123 | 3.055891 | TCGATCATCAGTGAAGCCAAGAA | 60.056 | 43.478 | 0.00 | 0.00 | 38.01 | 2.52 |
122 | 128 | 2.057316 | CGATCGATCATCAGTGAAGCC | 58.943 | 52.381 | 24.40 | 0.00 | 38.01 | 4.35 |
195 | 208 | 2.629656 | GCGCATCACAACCAAGGCT | 61.630 | 57.895 | 0.30 | 0.00 | 0.00 | 4.58 |
302 | 325 | 9.402320 | CTGATATGGACAGTAGTATAGTGCTAT | 57.598 | 37.037 | 0.00 | 0.00 | 45.90 | 2.97 |
328 | 351 | 2.284995 | ACTCCCCAGAGCTCACCC | 60.285 | 66.667 | 17.77 | 0.00 | 44.65 | 4.61 |
334 | 357 | 3.403558 | GTCCCCACTCCCCAGAGC | 61.404 | 72.222 | 0.00 | 0.00 | 44.65 | 4.09 |
360 | 383 | 7.346751 | AGCAAGTGGATTTCTTCTACAAAAA | 57.653 | 32.000 | 0.00 | 0.00 | 38.25 | 1.94 |
413 | 436 | 4.503741 | AATCACTGTCCCAATTGAAACG | 57.496 | 40.909 | 7.12 | 4.24 | 0.00 | 3.60 |
438 | 461 | 1.342174 | TCTCGTAGACCAACACCAACC | 59.658 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
455 | 478 | 4.753233 | ACAGCAGAGTATGTGATTGTCTC | 58.247 | 43.478 | 0.00 | 0.00 | 25.68 | 3.36 |
826 | 857 | 9.610705 | ATGCATATGATCAACATTAGTCCTATC | 57.389 | 33.333 | 6.97 | 0.00 | 40.07 | 2.08 |
827 | 858 | 9.392259 | CATGCATATGATCAACATTAGTCCTAT | 57.608 | 33.333 | 6.97 | 0.00 | 40.07 | 2.57 |
828 | 859 | 8.596293 | TCATGCATATGATCAACATTAGTCCTA | 58.404 | 33.333 | 6.97 | 0.00 | 38.37 | 2.94 |
829 | 860 | 7.455891 | TCATGCATATGATCAACATTAGTCCT | 58.544 | 34.615 | 6.97 | 0.00 | 38.37 | 3.85 |
830 | 861 | 7.677454 | TCATGCATATGATCAACATTAGTCC | 57.323 | 36.000 | 6.97 | 0.00 | 38.37 | 3.85 |
945 | 976 | 8.732746 | AGGTCGAAATAAAAGTATAACAGCAT | 57.267 | 30.769 | 0.00 | 0.00 | 0.00 | 3.79 |
987 | 1020 | 5.048083 | GGCAGTTGACATTTTTCTGATACCA | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
988 | 1021 | 5.048083 | TGGCAGTTGACATTTTTCTGATACC | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
996 | 1029 | 2.431782 | AGCAGTGGCAGTTGACATTTTT | 59.568 | 40.909 | 0.00 | 0.00 | 44.61 | 1.94 |
1108 | 1141 | 1.402787 | AGGCAAGACAAGTTTGGTGG | 58.597 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1123 | 1156 | 4.098914 | ACTTGTTTGACATCCTTAGGCA | 57.901 | 40.909 | 0.00 | 0.00 | 0.00 | 4.75 |
1206 | 1239 | 0.401738 | CTTCAGGGGCCTCAAACTCA | 59.598 | 55.000 | 4.79 | 0.00 | 0.00 | 3.41 |
1356 | 1389 | 0.178767 | CGCCCATCTGGTTCTCATCA | 59.821 | 55.000 | 0.00 | 0.00 | 36.04 | 3.07 |
1374 | 1407 | 1.683917 | CAGGTCAGAAGGTATCCCTCG | 59.316 | 57.143 | 0.00 | 0.00 | 41.56 | 4.63 |
1398 | 1431 | 2.579873 | CAATCTGCCTTGGGGTATGAG | 58.420 | 52.381 | 0.00 | 0.00 | 34.45 | 2.90 |
1413 | 1446 | 2.228822 | GTGGGTTTGAATGACGCAATCT | 59.771 | 45.455 | 0.00 | 0.00 | 40.87 | 2.40 |
1460 | 1493 | 3.201353 | TGAATCCACCACGAAACTTCA | 57.799 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
1461 | 1494 | 4.023193 | ACAATGAATCCACCACGAAACTTC | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1462 | 1495 | 3.888930 | ACAATGAATCCACCACGAAACTT | 59.111 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
1464 | 1497 | 3.915437 | ACAATGAATCCACCACGAAAC | 57.085 | 42.857 | 0.00 | 0.00 | 0.00 | 2.78 |
1465 | 1498 | 3.058570 | CGAACAATGAATCCACCACGAAA | 60.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
1469 | 1530 | 2.159382 | ACCGAACAATGAATCCACCAC | 58.841 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
1480 | 1541 | 1.981256 | ACAGAAGGCAACCGAACAAT | 58.019 | 45.000 | 0.00 | 0.00 | 37.17 | 2.71 |
1510 | 1574 | 1.203137 | AGATACGCCCACCTAGCCATA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
1524 | 1588 | 7.484975 | ACTGAAGTGATTTCTAGGAAGATACG | 58.515 | 38.462 | 0.00 | 0.00 | 36.71 | 3.06 |
1535 | 1599 | 6.208204 | CCCATCAAAAGACTGAAGTGATTTCT | 59.792 | 38.462 | 0.00 | 0.00 | 36.71 | 2.52 |
1537 | 1601 | 6.070656 | TCCCATCAAAAGACTGAAGTGATTT | 58.929 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1543 | 1607 | 4.093998 | CACGATCCCATCAAAAGACTGAAG | 59.906 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1545 | 1609 | 3.260632 | TCACGATCCCATCAAAAGACTGA | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1547 | 1611 | 3.981071 | TCACGATCCCATCAAAAGACT | 57.019 | 42.857 | 0.00 | 0.00 | 0.00 | 3.24 |
1559 | 1623 | 6.447162 | TGTCACAACTCATATATCACGATCC | 58.553 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1622 | 1686 | 2.095110 | CGAATTGCTGCAATCTGGACAA | 60.095 | 45.455 | 26.40 | 0.00 | 32.43 | 3.18 |
1626 | 1690 | 2.163010 | AGTTCGAATTGCTGCAATCTGG | 59.837 | 45.455 | 26.40 | 18.00 | 32.43 | 3.86 |
1730 | 1799 | 6.633500 | TCCATTCAAGTAACCAAAACAGAG | 57.367 | 37.500 | 0.00 | 0.00 | 0.00 | 3.35 |
1732 | 1801 | 6.748132 | ACATCCATTCAAGTAACCAAAACAG | 58.252 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1802 | 1871 | 5.051153 | GCTAGGACCAAGCTATTCAGTTAC | 58.949 | 45.833 | 0.00 | 0.00 | 37.01 | 2.50 |
1803 | 1872 | 4.202121 | CGCTAGGACCAAGCTATTCAGTTA | 60.202 | 45.833 | 0.00 | 0.00 | 37.85 | 2.24 |
1804 | 1873 | 3.430929 | CGCTAGGACCAAGCTATTCAGTT | 60.431 | 47.826 | 0.00 | 0.00 | 37.85 | 3.16 |
1808 | 1877 | 1.503294 | GCGCTAGGACCAAGCTATTC | 58.497 | 55.000 | 0.00 | 0.00 | 37.85 | 1.75 |
2001 | 2072 | 2.536803 | TGTTAACTGAACTGACGAACGC | 59.463 | 45.455 | 7.22 | 0.00 | 38.98 | 4.84 |
2006 | 2077 | 4.109766 | TCACTGTGTTAACTGAACTGACG | 58.890 | 43.478 | 7.79 | 0.00 | 38.98 | 4.35 |
2072 | 2144 | 7.895759 | ACCGTTTCAGTTGGTAGTAGTTTATA | 58.104 | 34.615 | 0.00 | 0.00 | 33.25 | 0.98 |
2073 | 2145 | 6.762333 | ACCGTTTCAGTTGGTAGTAGTTTAT | 58.238 | 36.000 | 0.00 | 0.00 | 33.25 | 1.40 |
2085 | 2157 | 3.304659 | CCTCCATTGAACCGTTTCAGTTG | 60.305 | 47.826 | 0.00 | 0.00 | 42.79 | 3.16 |
2100 | 2172 | 4.079730 | GGATTACTGGAAGGAACCTCCATT | 60.080 | 45.833 | 10.67 | 8.79 | 41.57 | 3.16 |
2127 | 2199 | 5.548406 | ACGGAGGGAGTATAAATTATGTGC | 58.452 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
2143 | 2215 | 5.114081 | AGACAAATATTTACGAACGGAGGG | 58.886 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2144 | 2216 | 6.657836 | AAGACAAATATTTACGAACGGAGG | 57.342 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
2145 | 2217 | 7.960793 | AGAAAGACAAATATTTACGAACGGAG | 58.039 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
2146 | 2218 | 7.894376 | AGAAAGACAAATATTTACGAACGGA | 57.106 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2147 | 2219 | 7.844653 | GCTAGAAAGACAAATATTTACGAACGG | 59.155 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
2148 | 2220 | 7.574481 | CGCTAGAAAGACAAATATTTACGAACG | 59.426 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2149 | 2221 | 8.589629 | TCGCTAGAAAGACAAATATTTACGAAC | 58.410 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
2150 | 2222 | 8.692110 | TCGCTAGAAAGACAAATATTTACGAA | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
2151 | 2223 | 8.867112 | ATCGCTAGAAAGACAAATATTTACGA | 57.133 | 30.769 | 0.00 | 0.00 | 0.00 | 3.43 |
2152 | 2224 | 9.916397 | AAATCGCTAGAAAGACAAATATTTACG | 57.084 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2156 | 2228 | 9.774742 | GTTGAAATCGCTAGAAAGACAAATATT | 57.225 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
2157 | 2229 | 8.946085 | TGTTGAAATCGCTAGAAAGACAAATAT | 58.054 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
2158 | 2230 | 8.317891 | TGTTGAAATCGCTAGAAAGACAAATA | 57.682 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2159 | 2231 | 7.202016 | TGTTGAAATCGCTAGAAAGACAAAT | 57.798 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2160 | 2232 | 6.612247 | TGTTGAAATCGCTAGAAAGACAAA | 57.388 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2161 | 2233 | 6.260050 | ACTTGTTGAAATCGCTAGAAAGACAA | 59.740 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2162 | 2234 | 5.758296 | ACTTGTTGAAATCGCTAGAAAGACA | 59.242 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2163 | 2235 | 6.073765 | TCACTTGTTGAAATCGCTAGAAAGAC | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2164 | 2236 | 5.989168 | TCACTTGTTGAAATCGCTAGAAAGA | 59.011 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2165 | 2237 | 6.073548 | AGTCACTTGTTGAAATCGCTAGAAAG | 60.074 | 38.462 | 0.00 | 0.00 | 35.39 | 2.62 |
2166 | 2238 | 5.758296 | AGTCACTTGTTGAAATCGCTAGAAA | 59.242 | 36.000 | 0.00 | 0.00 | 35.39 | 2.52 |
2167 | 2239 | 5.297547 | AGTCACTTGTTGAAATCGCTAGAA | 58.702 | 37.500 | 0.00 | 0.00 | 35.39 | 2.10 |
2168 | 2240 | 4.883083 | AGTCACTTGTTGAAATCGCTAGA | 58.117 | 39.130 | 0.00 | 0.00 | 35.39 | 2.43 |
2169 | 2241 | 5.633601 | TGTAGTCACTTGTTGAAATCGCTAG | 59.366 | 40.000 | 0.00 | 0.00 | 35.39 | 3.42 |
2170 | 2242 | 5.534407 | TGTAGTCACTTGTTGAAATCGCTA | 58.466 | 37.500 | 0.00 | 0.00 | 35.39 | 4.26 |
2171 | 2243 | 4.377021 | TGTAGTCACTTGTTGAAATCGCT | 58.623 | 39.130 | 0.00 | 0.00 | 35.39 | 4.93 |
2172 | 2244 | 4.725556 | TGTAGTCACTTGTTGAAATCGC | 57.274 | 40.909 | 0.00 | 0.00 | 35.39 | 4.58 |
2173 | 2245 | 6.307077 | TCGTATGTAGTCACTTGTTGAAATCG | 59.693 | 38.462 | 0.00 | 0.00 | 35.39 | 3.34 |
2174 | 2246 | 7.576750 | TCGTATGTAGTCACTTGTTGAAATC | 57.423 | 36.000 | 0.00 | 0.00 | 35.39 | 2.17 |
2175 | 2247 | 7.360101 | GCTTCGTATGTAGTCACTTGTTGAAAT | 60.360 | 37.037 | 0.00 | 0.00 | 35.39 | 2.17 |
2176 | 2248 | 6.073980 | GCTTCGTATGTAGTCACTTGTTGAAA | 60.074 | 38.462 | 0.00 | 0.00 | 35.39 | 2.69 |
2177 | 2249 | 5.404366 | GCTTCGTATGTAGTCACTTGTTGAA | 59.596 | 40.000 | 0.00 | 0.00 | 35.39 | 2.69 |
2178 | 2250 | 4.921515 | GCTTCGTATGTAGTCACTTGTTGA | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2179 | 2251 | 4.684242 | TGCTTCGTATGTAGTCACTTGTTG | 59.316 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2180 | 2252 | 4.878439 | TGCTTCGTATGTAGTCACTTGTT | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2181 | 2253 | 4.514781 | TGCTTCGTATGTAGTCACTTGT | 57.485 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2182 | 2254 | 5.839262 | TTTGCTTCGTATGTAGTCACTTG | 57.161 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2183 | 2255 | 6.649141 | TCATTTTGCTTCGTATGTAGTCACTT | 59.351 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2184 | 2256 | 6.163476 | TCATTTTGCTTCGTATGTAGTCACT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2185 | 2257 | 6.090898 | ACTCATTTTGCTTCGTATGTAGTCAC | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
2186 | 2258 | 6.090763 | CACTCATTTTGCTTCGTATGTAGTCA | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2187 | 2259 | 6.310467 | TCACTCATTTTGCTTCGTATGTAGTC | 59.690 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2188 | 2260 | 6.163476 | TCACTCATTTTGCTTCGTATGTAGT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2189 | 2261 | 6.647212 | TCACTCATTTTGCTTCGTATGTAG | 57.353 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2190 | 2262 | 7.549134 | AGATTCACTCATTTTGCTTCGTATGTA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2191 | 2263 | 5.940192 | TTCACTCATTTTGCTTCGTATGT | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
2192 | 2264 | 6.779117 | AGATTCACTCATTTTGCTTCGTATG | 58.221 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2193 | 2265 | 6.992063 | AGATTCACTCATTTTGCTTCGTAT | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2194 | 2266 | 6.871492 | TGTAGATTCACTCATTTTGCTTCGTA | 59.129 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
2195 | 2267 | 5.700832 | TGTAGATTCACTCATTTTGCTTCGT | 59.299 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2196 | 2268 | 6.017933 | GTGTAGATTCACTCATTTTGCTTCG | 58.982 | 40.000 | 0.00 | 0.00 | 35.68 | 3.79 |
2197 | 2269 | 7.138692 | AGTGTAGATTCACTCATTTTGCTTC | 57.861 | 36.000 | 0.00 | 0.00 | 44.07 | 3.86 |
2227 | 2299 | 9.470399 | ACCACATACGGATGTATATAGACATAA | 57.530 | 33.333 | 14.23 | 0.77 | 44.82 | 1.90 |
2229 | 2301 | 7.956328 | ACCACATACGGATGTATATAGACAT | 57.044 | 36.000 | 14.23 | 12.70 | 44.82 | 3.06 |
2230 | 2302 | 8.105197 | ACTACCACATACGGATGTATATAGACA | 58.895 | 37.037 | 22.62 | 2.07 | 44.82 | 3.41 |
2231 | 2303 | 8.503458 | ACTACCACATACGGATGTATATAGAC | 57.497 | 38.462 | 22.62 | 0.00 | 44.82 | 2.59 |
2232 | 2304 | 7.772292 | GGACTACCACATACGGATGTATATAGA | 59.228 | 40.741 | 22.62 | 5.04 | 44.82 | 1.98 |
2233 | 2305 | 7.555195 | TGGACTACCACATACGGATGTATATAG | 59.445 | 40.741 | 14.23 | 16.35 | 44.82 | 1.31 |
2234 | 2306 | 7.404481 | TGGACTACCACATACGGATGTATATA | 58.596 | 38.462 | 14.23 | 5.36 | 44.82 | 0.86 |
2235 | 2307 | 6.250711 | TGGACTACCACATACGGATGTATAT | 58.749 | 40.000 | 14.23 | 4.37 | 44.82 | 0.86 |
2236 | 2308 | 5.633117 | TGGACTACCACATACGGATGTATA | 58.367 | 41.667 | 14.23 | 8.27 | 44.82 | 1.47 |
2237 | 2309 | 4.476297 | TGGACTACCACATACGGATGTAT | 58.524 | 43.478 | 14.23 | 7.46 | 44.82 | 2.29 |
2238 | 2310 | 3.900971 | TGGACTACCACATACGGATGTA | 58.099 | 45.455 | 14.23 | 0.00 | 44.82 | 2.29 |
2269 | 2341 | 9.595823 | CCGTTCCTAAATATTTGTCTTCTTAGA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
2270 | 2342 | 9.595823 | TCCGTTCCTAAATATTTGTCTTCTTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.18 |
2271 | 2343 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTCTTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
2272 | 2344 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTCTT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
2273 | 2345 | 7.048512 | CCTCCGTTCCTAAATATTTGTCTTCT | 58.951 | 38.462 | 11.05 | 0.00 | 0.00 | 2.85 |
2274 | 2346 | 6.260271 | CCCTCCGTTCCTAAATATTTGTCTTC | 59.740 | 42.308 | 11.05 | 0.00 | 0.00 | 2.87 |
2275 | 2347 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
2276 | 2348 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
2277 | 2349 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
2278 | 2350 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
2279 | 2351 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
2280 | 2352 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
2281 | 2353 | 6.141790 | AGTACTCCCTCCGTTCCTAAATATT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2282 | 2354 | 5.713807 | AGTACTCCCTCCGTTCCTAAATAT | 58.286 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
2283 | 2355 | 5.134725 | AGTACTCCCTCCGTTCCTAAATA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2284 | 2356 | 3.991683 | AGTACTCCCTCCGTTCCTAAAT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2285 | 2357 | 3.463048 | AGTACTCCCTCCGTTCCTAAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2286 | 2358 | 3.372025 | GGTAGTACTCCCTCCGTTCCTAA | 60.372 | 52.174 | 0.00 | 0.00 | 0.00 | 2.69 |
2287 | 2359 | 2.173569 | GGTAGTACTCCCTCCGTTCCTA | 59.826 | 54.545 | 0.00 | 0.00 | 0.00 | 2.94 |
2288 | 2360 | 1.064091 | GGTAGTACTCCCTCCGTTCCT | 60.064 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
2289 | 2361 | 1.064091 | AGGTAGTACTCCCTCCGTTCC | 60.064 | 57.143 | 0.11 | 0.00 | 0.00 | 3.62 |
2290 | 2362 | 2.433662 | AGGTAGTACTCCCTCCGTTC | 57.566 | 55.000 | 0.11 | 0.00 | 0.00 | 3.95 |
2291 | 2363 | 4.322057 | TTTAGGTAGTACTCCCTCCGTT | 57.678 | 45.455 | 10.79 | 0.00 | 32.08 | 4.44 |
2292 | 2364 | 4.533001 | ATTTAGGTAGTACTCCCTCCGT | 57.467 | 45.455 | 10.79 | 0.00 | 32.08 | 4.69 |
2293 | 2365 | 5.629125 | AGTATTTAGGTAGTACTCCCTCCG | 58.371 | 45.833 | 10.79 | 0.00 | 32.08 | 4.63 |
2299 | 2371 | 5.704978 | CGGAGGGAGTATTTAGGTAGTACTC | 59.295 | 48.000 | 0.00 | 3.76 | 42.14 | 2.59 |
2300 | 2372 | 5.133491 | ACGGAGGGAGTATTTAGGTAGTACT | 59.867 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2301 | 2373 | 5.380900 | ACGGAGGGAGTATTTAGGTAGTAC | 58.619 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
2302 | 2374 | 5.653255 | ACGGAGGGAGTATTTAGGTAGTA | 57.347 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2303 | 2375 | 4.533001 | ACGGAGGGAGTATTTAGGTAGT | 57.467 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
2304 | 2376 | 4.280425 | GGAACGGAGGGAGTATTTAGGTAG | 59.720 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2305 | 2377 | 4.078980 | AGGAACGGAGGGAGTATTTAGGTA | 60.079 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
2306 | 2378 | 3.036819 | GGAACGGAGGGAGTATTTAGGT | 58.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2307 | 2379 | 3.306613 | AGGAACGGAGGGAGTATTTAGG | 58.693 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2308 | 2380 | 6.475596 | TTTAGGAACGGAGGGAGTATTTAG | 57.524 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2309 | 2381 | 8.731591 | ATATTTAGGAACGGAGGGAGTATTTA | 57.268 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2310 | 2382 | 5.970501 | ATTTAGGAACGGAGGGAGTATTT | 57.029 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2311 | 2383 | 7.628501 | AATATTTAGGAACGGAGGGAGTATT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2312 | 2384 | 7.072076 | ACAAATATTTAGGAACGGAGGGAGTAT | 59.928 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2313 | 2385 | 6.384886 | ACAAATATTTAGGAACGGAGGGAGTA | 59.615 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2314 | 2386 | 5.191124 | ACAAATATTTAGGAACGGAGGGAGT | 59.809 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2315 | 2387 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2316 | 2388 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2317 | 2389 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2318 | 2390 | 7.553044 | AGAAAGACAAATATTTAGGAACGGAGG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2319 | 2391 | 8.494016 | AGAAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
2320 | 2392 | 9.595823 | CTAGAAAGACAAATATTTAGGAACGGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
2321 | 2393 | 9.595823 | TCTAGAAAGACAAATATTTAGGAACGG | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
2340 | 2412 | 9.527157 | TGGTAATCCATTTGAAATGTCTAGAAA | 57.473 | 29.630 | 15.93 | 0.00 | 39.03 | 2.52 |
2396 | 2468 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
2397 | 2469 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2398 | 2470 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2399 | 2471 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
2400 | 2472 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
2401 | 2473 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2402 | 2474 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2403 | 2475 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2404 | 2476 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2405 | 2477 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2406 | 2478 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2407 | 2479 | 5.005779 | GTGACTACATACGGAGCAAAATGAG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2408 | 2480 | 4.868171 | GTGACTACATACGGAGCAAAATGA | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2409 | 2481 | 4.870426 | AGTGACTACATACGGAGCAAAATG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2410 | 2482 | 5.086104 | AGTGACTACATACGGAGCAAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
2411 | 2483 | 4.530710 | AGTGACTACATACGGAGCAAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
2412 | 2484 | 4.242475 | CAAGTGACTACATACGGAGCAAA | 58.758 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
2413 | 2485 | 3.368013 | CCAAGTGACTACATACGGAGCAA | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
2414 | 2486 | 2.165641 | CCAAGTGACTACATACGGAGCA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2415 | 2487 | 2.165845 | ACCAAGTGACTACATACGGAGC | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2416 | 2488 | 3.442625 | TCACCAAGTGACTACATACGGAG | 59.557 | 47.826 | 0.00 | 0.00 | 37.67 | 4.63 |
2417 | 2489 | 3.423749 | TCACCAAGTGACTACATACGGA | 58.576 | 45.455 | 0.00 | 0.00 | 37.67 | 4.69 |
2418 | 2490 | 3.861276 | TCACCAAGTGACTACATACGG | 57.139 | 47.619 | 0.00 | 0.00 | 37.67 | 4.02 |
2419 | 2491 | 5.637810 | ACATTTCACCAAGTGACTACATACG | 59.362 | 40.000 | 0.00 | 0.00 | 42.60 | 3.06 |
2420 | 2492 | 6.874134 | AGACATTTCACCAAGTGACTACATAC | 59.126 | 38.462 | 0.00 | 0.00 | 42.60 | 2.39 |
2421 | 2493 | 7.004555 | AGACATTTCACCAAGTGACTACATA | 57.995 | 36.000 | 0.00 | 0.00 | 42.60 | 2.29 |
2422 | 2494 | 5.869579 | AGACATTTCACCAAGTGACTACAT | 58.130 | 37.500 | 0.00 | 0.00 | 42.60 | 2.29 |
2423 | 2495 | 5.290493 | AGACATTTCACCAAGTGACTACA | 57.710 | 39.130 | 0.00 | 0.00 | 42.60 | 2.74 |
2424 | 2496 | 6.688578 | TCTAGACATTTCACCAAGTGACTAC | 58.311 | 40.000 | 0.00 | 0.00 | 42.60 | 2.73 |
2425 | 2497 | 6.911250 | TCTAGACATTTCACCAAGTGACTA | 57.089 | 37.500 | 0.00 | 0.00 | 42.60 | 2.59 |
2426 | 2498 | 5.808366 | TCTAGACATTTCACCAAGTGACT | 57.192 | 39.130 | 0.00 | 0.00 | 42.60 | 3.41 |
2427 | 2499 | 6.706270 | TCTTTCTAGACATTTCACCAAGTGAC | 59.294 | 38.462 | 0.00 | 0.00 | 42.60 | 3.67 |
2428 | 2500 | 6.826668 | TCTTTCTAGACATTTCACCAAGTGA | 58.173 | 36.000 | 0.00 | 0.00 | 41.09 | 3.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.