Multiple sequence alignment - TraesCS1B01G284900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G284900 chr1B 100.000 2708 0 0 1 2708 495093598 495096305 0.000000e+00 5001.0
1 TraesCS1B01G284900 chr1B 82.075 106 17 2 2 106 194905102 194905206 3.710000e-14 89.8
2 TraesCS1B01G284900 chr1D 95.722 2104 40 14 633 2708 371185674 371187755 0.000000e+00 3341.0
3 TraesCS1B01G284900 chr1D 89.441 161 12 2 438 593 371185522 371185682 5.910000e-47 198.0
4 TraesCS1B01G284900 chr1D 87.179 78 8 2 2 78 146213802 146213878 1.340000e-13 87.9
5 TraesCS1B01G284900 chr1A 94.674 2084 47 23 660 2708 470299844 470301898 0.000000e+00 3175.0
6 TraesCS1B01G284900 chr1A 93.691 317 18 2 1 316 470244033 470244348 8.770000e-130 473.0
7 TraesCS1B01G284900 chr1A 90.000 80 6 2 2 80 143261317 143261239 4.770000e-18 102.0
8 TraesCS1B01G284900 chr3B 81.735 219 31 5 1423 1641 643266347 643266556 9.970000e-40 174.0
9 TraesCS1B01G284900 chr6B 90.598 117 10 1 1 116 404378220 404378104 1.300000e-33 154.0
10 TraesCS1B01G284900 chr6B 85.714 112 12 4 1 110 486567891 486567782 6.130000e-22 115.0
11 TraesCS1B01G284900 chr6B 78.761 113 21 3 1 111 22944554 22944443 3.740000e-09 73.1
12 TraesCS1B01G284900 chr2D 89.157 83 8 1 29 110 391868592 391868674 4.770000e-18 102.0
13 TraesCS1B01G284900 chr5B 81.416 113 19 2 1 111 530689854 530689742 1.030000e-14 91.6
14 TraesCS1B01G284900 chr7D 95.349 43 2 0 74 116 193588392 193588350 4.840000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G284900 chr1B 495093598 495096305 2707 False 5001.0 5001 100.0000 1 2708 1 chr1B.!!$F2 2707
1 TraesCS1B01G284900 chr1D 371185522 371187755 2233 False 1769.5 3341 92.5815 438 2708 2 chr1D.!!$F2 2270
2 TraesCS1B01G284900 chr1A 470299844 470301898 2054 False 3175.0 3175 94.6740 660 2708 1 chr1A.!!$F2 2048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 643 0.034089 TCCTCTGTGGCTCGATCAGA 60.034 55.0 0.0 8.61 36.85 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1802 0.540923 AGAGGACGGTAGTAGCTCGT 59.459 55.0 0.0 0.0 39.99 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 5.982890 AAAATACCCAACTCCAACAGATG 57.017 39.130 0.00 0.00 0.00 2.90
63 64 4.927267 AATACCCAACTCCAACAGATGA 57.073 40.909 0.00 0.00 0.00 2.92
64 65 5.456921 AATACCCAACTCCAACAGATGAT 57.543 39.130 0.00 0.00 0.00 2.45
65 66 3.077484 ACCCAACTCCAACAGATGATG 57.923 47.619 0.00 0.00 0.00 3.07
66 67 2.644299 ACCCAACTCCAACAGATGATGA 59.356 45.455 0.00 0.00 0.00 2.92
67 68 3.074390 ACCCAACTCCAACAGATGATGAA 59.926 43.478 0.00 0.00 0.00 2.57
68 69 4.264083 ACCCAACTCCAACAGATGATGAAT 60.264 41.667 0.00 0.00 0.00 2.57
69 70 5.044919 ACCCAACTCCAACAGATGATGAATA 60.045 40.000 0.00 0.00 0.00 1.75
70 71 5.887598 CCCAACTCCAACAGATGATGAATAA 59.112 40.000 0.00 0.00 0.00 1.40
71 72 6.548622 CCCAACTCCAACAGATGATGAATAAT 59.451 38.462 0.00 0.00 0.00 1.28
72 73 7.069085 CCCAACTCCAACAGATGATGAATAATT 59.931 37.037 0.00 0.00 0.00 1.40
73 74 7.919091 CCAACTCCAACAGATGATGAATAATTG 59.081 37.037 0.00 0.00 0.00 2.32
74 75 8.680001 CAACTCCAACAGATGATGAATAATTGA 58.320 33.333 0.00 0.00 0.00 2.57
75 76 8.991783 ACTCCAACAGATGATGAATAATTGAT 57.008 30.769 0.00 0.00 0.00 2.57
76 77 8.847196 ACTCCAACAGATGATGAATAATTGATG 58.153 33.333 0.00 0.00 0.00 3.07
77 78 8.983702 TCCAACAGATGATGAATAATTGATGA 57.016 30.769 0.00 0.00 0.00 2.92
78 79 9.582648 TCCAACAGATGATGAATAATTGATGAT 57.417 29.630 0.00 0.00 0.00 2.45
79 80 9.626045 CCAACAGATGATGAATAATTGATGATG 57.374 33.333 0.00 0.00 0.00 3.07
82 83 9.569122 ACAGATGATGAATAATTGATGATGACA 57.431 29.630 0.00 0.00 0.00 3.58
91 92 9.443283 GAATAATTGATGATGACAAACTAGTGC 57.557 33.333 0.00 0.00 0.00 4.40
92 93 8.743085 ATAATTGATGATGACAAACTAGTGCT 57.257 30.769 0.00 0.00 0.00 4.40
93 94 6.674694 ATTGATGATGACAAACTAGTGCTC 57.325 37.500 0.00 0.00 0.00 4.26
94 95 4.507710 TGATGATGACAAACTAGTGCTCC 58.492 43.478 0.00 0.00 0.00 4.70
95 96 4.020307 TGATGATGACAAACTAGTGCTCCA 60.020 41.667 0.00 0.00 0.00 3.86
96 97 4.350368 TGATGACAAACTAGTGCTCCAA 57.650 40.909 0.00 0.00 0.00 3.53
97 98 4.065088 TGATGACAAACTAGTGCTCCAAC 58.935 43.478 0.00 0.00 0.00 3.77
98 99 3.552132 TGACAAACTAGTGCTCCAACA 57.448 42.857 0.00 0.00 0.00 3.33
99 100 3.466836 TGACAAACTAGTGCTCCAACAG 58.533 45.455 0.00 0.00 0.00 3.16
100 101 3.133901 TGACAAACTAGTGCTCCAACAGA 59.866 43.478 0.00 0.00 0.00 3.41
101 102 4.202357 TGACAAACTAGTGCTCCAACAGAT 60.202 41.667 0.00 0.00 0.00 2.90
102 103 4.067896 ACAAACTAGTGCTCCAACAGATG 58.932 43.478 0.00 0.00 0.00 2.90
103 104 4.202357 ACAAACTAGTGCTCCAACAGATGA 60.202 41.667 0.00 0.00 0.00 2.92
104 105 4.833478 AACTAGTGCTCCAACAGATGAT 57.167 40.909 0.00 0.00 0.00 2.45
105 106 4.134379 ACTAGTGCTCCAACAGATGATG 57.866 45.455 0.00 0.00 0.00 3.07
106 107 3.517100 ACTAGTGCTCCAACAGATGATGT 59.483 43.478 0.00 0.00 46.97 3.06
107 108 4.711846 ACTAGTGCTCCAACAGATGATGTA 59.288 41.667 0.00 0.00 43.00 2.29
108 109 4.558226 AGTGCTCCAACAGATGATGTAA 57.442 40.909 0.00 0.00 43.00 2.41
109 110 4.910195 AGTGCTCCAACAGATGATGTAAA 58.090 39.130 0.00 0.00 43.00 2.01
110 111 5.316167 AGTGCTCCAACAGATGATGTAAAA 58.684 37.500 0.00 0.00 43.00 1.52
111 112 5.182001 AGTGCTCCAACAGATGATGTAAAAC 59.818 40.000 0.00 0.00 43.00 2.43
112 113 5.182001 GTGCTCCAACAGATGATGTAAAACT 59.818 40.000 0.00 0.00 43.00 2.66
113 114 6.371548 GTGCTCCAACAGATGATGTAAAACTA 59.628 38.462 0.00 0.00 43.00 2.24
114 115 6.595326 TGCTCCAACAGATGATGTAAAACTAG 59.405 38.462 0.00 0.00 43.00 2.57
115 116 6.595716 GCTCCAACAGATGATGTAAAACTAGT 59.404 38.462 0.00 0.00 43.00 2.57
116 117 7.764443 GCTCCAACAGATGATGTAAAACTAGTA 59.236 37.037 0.00 0.00 43.00 1.82
117 118 8.997621 TCCAACAGATGATGTAAAACTAGTAC 57.002 34.615 0.00 0.00 43.00 2.73
118 119 8.812972 TCCAACAGATGATGTAAAACTAGTACT 58.187 33.333 0.00 0.00 43.00 2.73
162 163 3.622166 TTTTACCAGCTACTGTAGGGC 57.378 47.619 16.09 4.10 0.00 5.19
163 164 2.241281 TTACCAGCTACTGTAGGGCA 57.759 50.000 16.09 0.00 0.00 5.36
177 178 2.521708 GGCAGCACCCCACAGTTT 60.522 61.111 0.00 0.00 0.00 2.66
178 179 2.133641 GGCAGCACCCCACAGTTTT 61.134 57.895 0.00 0.00 0.00 2.43
179 180 0.825840 GGCAGCACCCCACAGTTTTA 60.826 55.000 0.00 0.00 0.00 1.52
180 181 1.036707 GCAGCACCCCACAGTTTTAA 58.963 50.000 0.00 0.00 0.00 1.52
181 182 1.269569 GCAGCACCCCACAGTTTTAAC 60.270 52.381 0.00 0.00 0.00 2.01
182 183 2.306847 CAGCACCCCACAGTTTTAACT 58.693 47.619 0.00 0.00 40.60 2.24
183 184 2.693074 CAGCACCCCACAGTTTTAACTT 59.307 45.455 0.00 0.00 37.08 2.66
184 185 3.132111 CAGCACCCCACAGTTTTAACTTT 59.868 43.478 0.00 0.00 37.08 2.66
185 186 3.772572 AGCACCCCACAGTTTTAACTTTT 59.227 39.130 0.00 0.00 37.08 2.27
186 187 4.957327 AGCACCCCACAGTTTTAACTTTTA 59.043 37.500 0.00 0.00 37.08 1.52
187 188 5.600898 AGCACCCCACAGTTTTAACTTTTAT 59.399 36.000 0.00 0.00 37.08 1.40
188 189 6.099125 AGCACCCCACAGTTTTAACTTTTATT 59.901 34.615 0.00 0.00 37.08 1.40
189 190 7.288158 AGCACCCCACAGTTTTAACTTTTATTA 59.712 33.333 0.00 0.00 37.08 0.98
190 191 8.092068 GCACCCCACAGTTTTAACTTTTATTAT 58.908 33.333 0.00 0.00 37.08 1.28
191 192 9.990360 CACCCCACAGTTTTAACTTTTATTATT 57.010 29.630 0.00 0.00 37.08 1.40
243 244 8.462016 ACATGGAGACTAAATTACATGAAAAGC 58.538 33.333 0.00 0.00 39.08 3.51
244 245 8.680903 CATGGAGACTAAATTACATGAAAAGCT 58.319 33.333 0.00 0.00 38.29 3.74
245 246 9.905713 ATGGAGACTAAATTACATGAAAAGCTA 57.094 29.630 0.00 0.00 0.00 3.32
246 247 9.383519 TGGAGACTAAATTACATGAAAAGCTAG 57.616 33.333 0.00 1.78 0.00 3.42
247 248 9.601217 GGAGACTAAATTACATGAAAAGCTAGA 57.399 33.333 0.00 0.00 0.00 2.43
257 258 9.890629 TTACATGAAAAGCTAGATTACATCACT 57.109 29.630 0.00 1.63 0.00 3.41
258 259 8.430801 ACATGAAAAGCTAGATTACATCACTC 57.569 34.615 0.00 0.00 0.00 3.51
259 260 8.043113 ACATGAAAAGCTAGATTACATCACTCA 58.957 33.333 0.00 0.00 0.00 3.41
260 261 8.886719 CATGAAAAGCTAGATTACATCACTCAA 58.113 33.333 9.38 0.00 0.00 3.02
261 262 8.256611 TGAAAAGCTAGATTACATCACTCAAC 57.743 34.615 0.00 0.00 0.00 3.18
262 263 8.097038 TGAAAAGCTAGATTACATCACTCAACT 58.903 33.333 0.00 0.00 0.00 3.16
263 264 8.854614 AAAAGCTAGATTACATCACTCAACTT 57.145 30.769 0.00 0.00 0.00 2.66
264 265 9.944376 AAAAGCTAGATTACATCACTCAACTTA 57.056 29.630 0.00 0.00 0.00 2.24
265 266 9.944376 AAAGCTAGATTACATCACTCAACTTAA 57.056 29.630 0.00 0.00 0.00 1.85
266 267 9.593134 AAGCTAGATTACATCACTCAACTTAAG 57.407 33.333 0.00 0.00 0.00 1.85
267 268 8.200792 AGCTAGATTACATCACTCAACTTAAGG 58.799 37.037 7.53 0.00 0.00 2.69
268 269 7.982354 GCTAGATTACATCACTCAACTTAAGGT 59.018 37.037 7.53 0.00 0.00 3.50
269 270 9.307121 CTAGATTACATCACTCAACTTAAGGTG 57.693 37.037 14.69 14.69 0.00 4.00
270 271 7.106239 AGATTACATCACTCAACTTAAGGTGG 58.894 38.462 20.25 13.08 0.00 4.61
271 272 4.706842 ACATCACTCAACTTAAGGTGGT 57.293 40.909 20.25 13.70 0.00 4.16
272 273 5.818678 ACATCACTCAACTTAAGGTGGTA 57.181 39.130 20.25 1.07 0.00 3.25
273 274 5.794894 ACATCACTCAACTTAAGGTGGTAG 58.205 41.667 20.25 13.40 0.00 3.18
274 275 4.884668 TCACTCAACTTAAGGTGGTAGG 57.115 45.455 20.25 10.53 0.00 3.18
275 276 4.485875 TCACTCAACTTAAGGTGGTAGGA 58.514 43.478 20.25 10.18 0.00 2.94
276 277 4.903049 TCACTCAACTTAAGGTGGTAGGAA 59.097 41.667 20.25 0.00 0.00 3.36
277 278 5.367352 TCACTCAACTTAAGGTGGTAGGAAA 59.633 40.000 20.25 0.00 0.00 3.13
278 279 5.701290 CACTCAACTTAAGGTGGTAGGAAAG 59.299 44.000 20.25 10.62 0.00 2.62
279 280 5.605488 ACTCAACTTAAGGTGGTAGGAAAGA 59.395 40.000 20.25 0.00 0.00 2.52
280 281 6.272558 ACTCAACTTAAGGTGGTAGGAAAGAT 59.727 38.462 20.25 0.00 0.00 2.40
281 282 7.456902 ACTCAACTTAAGGTGGTAGGAAAGATA 59.543 37.037 20.25 0.00 0.00 1.98
282 283 7.618137 TCAACTTAAGGTGGTAGGAAAGATAC 58.382 38.462 20.25 0.00 0.00 2.24
283 284 6.556974 ACTTAAGGTGGTAGGAAAGATACC 57.443 41.667 7.53 0.00 42.62 2.73
284 285 5.427806 ACTTAAGGTGGTAGGAAAGATACCC 59.572 44.000 7.53 0.00 41.78 3.69
285 286 2.395619 AGGTGGTAGGAAAGATACCCG 58.604 52.381 0.00 0.00 41.78 5.28
286 287 2.113807 GGTGGTAGGAAAGATACCCGT 58.886 52.381 0.00 0.00 41.78 5.28
287 288 2.102084 GGTGGTAGGAAAGATACCCGTC 59.898 54.545 0.00 0.00 41.78 4.79
288 289 3.029570 GTGGTAGGAAAGATACCCGTCT 58.970 50.000 0.00 0.00 41.78 4.18
289 290 4.210331 GTGGTAGGAAAGATACCCGTCTA 58.790 47.826 0.00 0.00 41.78 2.59
290 291 4.646492 GTGGTAGGAAAGATACCCGTCTAA 59.354 45.833 0.00 0.00 41.78 2.10
291 292 5.303845 GTGGTAGGAAAGATACCCGTCTAAT 59.696 44.000 0.00 0.00 41.78 1.73
292 293 5.901276 TGGTAGGAAAGATACCCGTCTAATT 59.099 40.000 0.00 0.00 41.78 1.40
293 294 7.014615 GTGGTAGGAAAGATACCCGTCTAATTA 59.985 40.741 0.00 0.00 41.78 1.40
294 295 7.232127 TGGTAGGAAAGATACCCGTCTAATTAG 59.768 40.741 6.11 6.11 41.78 1.73
295 296 7.232330 GGTAGGAAAGATACCCGTCTAATTAGT 59.768 40.741 12.19 0.00 37.33 2.24
296 297 7.672122 AGGAAAGATACCCGTCTAATTAGTT 57.328 36.000 12.19 0.00 0.00 2.24
297 298 7.724287 AGGAAAGATACCCGTCTAATTAGTTC 58.276 38.462 12.19 4.84 0.00 3.01
298 299 7.343833 AGGAAAGATACCCGTCTAATTAGTTCA 59.656 37.037 12.19 0.00 0.00 3.18
299 300 8.148999 GGAAAGATACCCGTCTAATTAGTTCAT 58.851 37.037 12.19 0.00 0.00 2.57
300 301 9.194271 GAAAGATACCCGTCTAATTAGTTCATC 57.806 37.037 12.19 7.83 0.00 2.92
301 302 8.480133 AAGATACCCGTCTAATTAGTTCATCT 57.520 34.615 12.19 9.55 0.00 2.90
302 303 8.113173 AGATACCCGTCTAATTAGTTCATCTC 57.887 38.462 12.19 3.71 0.00 2.75
303 304 7.945664 AGATACCCGTCTAATTAGTTCATCTCT 59.054 37.037 12.19 5.62 0.00 3.10
304 305 9.228949 GATACCCGTCTAATTAGTTCATCTCTA 57.771 37.037 12.19 0.00 0.00 2.43
305 306 9.756571 ATACCCGTCTAATTAGTTCATCTCTAT 57.243 33.333 12.19 0.00 0.00 1.98
307 308 9.756571 ACCCGTCTAATTAGTTCATCTCTATAT 57.243 33.333 12.19 0.00 0.00 0.86
328 329 9.921637 CTATATCTACTCTTGATCCTTTGAACC 57.078 37.037 0.00 0.00 0.00 3.62
329 330 6.627087 ATCTACTCTTGATCCTTTGAACCA 57.373 37.500 0.00 0.00 0.00 3.67
330 331 6.042638 TCTACTCTTGATCCTTTGAACCAG 57.957 41.667 0.00 0.00 0.00 4.00
331 332 3.416156 ACTCTTGATCCTTTGAACCAGC 58.584 45.455 0.00 0.00 0.00 4.85
332 333 3.181440 ACTCTTGATCCTTTGAACCAGCA 60.181 43.478 0.00 0.00 0.00 4.41
333 334 3.822735 CTCTTGATCCTTTGAACCAGCAA 59.177 43.478 0.00 0.00 0.00 3.91
334 335 3.822735 TCTTGATCCTTTGAACCAGCAAG 59.177 43.478 0.00 0.00 34.41 4.01
335 336 2.517959 TGATCCTTTGAACCAGCAAGG 58.482 47.619 0.00 0.00 45.67 3.61
336 337 2.108075 TGATCCTTTGAACCAGCAAGGA 59.892 45.455 2.42 2.42 41.22 3.36
337 338 2.978156 TCCTTTGAACCAGCAAGGAT 57.022 45.000 1.83 0.00 41.22 3.24
338 339 4.018506 TGATCCTTTGAACCAGCAAGGATA 60.019 41.667 11.76 0.72 41.22 2.59
339 340 4.591321 TCCTTTGAACCAGCAAGGATAT 57.409 40.909 1.83 0.00 41.22 1.63
340 341 5.708736 TCCTTTGAACCAGCAAGGATATA 57.291 39.130 1.83 0.00 41.22 0.86
341 342 6.266131 TCCTTTGAACCAGCAAGGATATAT 57.734 37.500 1.83 0.00 41.22 0.86
342 343 7.387265 TCCTTTGAACCAGCAAGGATATATA 57.613 36.000 1.83 0.00 41.22 0.86
343 344 7.988937 TCCTTTGAACCAGCAAGGATATATAT 58.011 34.615 1.83 0.00 41.22 0.86
344 345 8.103305 TCCTTTGAACCAGCAAGGATATATATC 58.897 37.037 13.50 13.50 41.22 1.63
345 346 7.884877 CCTTTGAACCAGCAAGGATATATATCA 59.115 37.037 21.50 0.00 41.22 2.15
346 347 9.458727 CTTTGAACCAGCAAGGATATATATCAT 57.541 33.333 21.50 13.74 41.22 2.45
347 348 8.797350 TTGAACCAGCAAGGATATATATCATG 57.203 34.615 21.50 19.14 41.22 3.07
348 349 8.149631 TGAACCAGCAAGGATATATATCATGA 57.850 34.615 21.50 0.00 41.22 3.07
349 350 8.605065 TGAACCAGCAAGGATATATATCATGAA 58.395 33.333 21.50 0.00 41.22 2.57
350 351 9.624373 GAACCAGCAAGGATATATATCATGAAT 57.376 33.333 21.50 10.75 41.22 2.57
351 352 8.975663 ACCAGCAAGGATATATATCATGAATG 57.024 34.615 21.50 18.41 41.22 2.67
352 353 8.775151 ACCAGCAAGGATATATATCATGAATGA 58.225 33.333 21.50 0.00 41.22 2.57
353 354 9.623000 CCAGCAAGGATATATATCATGAATGAA 57.377 33.333 21.50 0.00 39.13 2.57
355 356 9.848710 AGCAAGGATATATATCATGAATGAAGG 57.151 33.333 21.50 2.97 40.69 3.46
356 357 8.566260 GCAAGGATATATATCATGAATGAAGGC 58.434 37.037 21.50 7.89 40.69 4.35
357 358 9.623000 CAAGGATATATATCATGAATGAAGGCA 57.377 33.333 21.50 0.00 40.69 4.75
358 359 9.624373 AAGGATATATATCATGAATGAAGGCAC 57.376 33.333 21.50 2.38 40.69 5.01
359 360 8.216423 AGGATATATATCATGAATGAAGGCACC 58.784 37.037 21.50 2.30 40.69 5.01
360 361 8.216423 GGATATATATCATGAATGAAGGCACCT 58.784 37.037 21.50 0.00 40.69 4.00
361 362 9.270640 GATATATATCATGAATGAAGGCACCTC 57.729 37.037 16.41 0.00 40.69 3.85
362 363 3.657398 ATCATGAATGAAGGCACCTCA 57.343 42.857 0.00 0.00 40.69 3.86
363 364 2.715046 TCATGAATGAAGGCACCTCAC 58.285 47.619 0.00 0.00 33.08 3.51
364 365 1.747355 CATGAATGAAGGCACCTCACC 59.253 52.381 0.00 0.00 0.00 4.02
365 366 0.770499 TGAATGAAGGCACCTCACCA 59.230 50.000 0.00 0.00 0.00 4.17
366 367 1.168714 GAATGAAGGCACCTCACCAC 58.831 55.000 0.00 0.00 0.00 4.16
367 368 0.773644 AATGAAGGCACCTCACCACT 59.226 50.000 0.00 0.00 0.00 4.00
368 369 0.773644 ATGAAGGCACCTCACCACTT 59.226 50.000 0.00 0.00 0.00 3.16
369 370 1.429930 TGAAGGCACCTCACCACTTA 58.570 50.000 0.00 0.00 0.00 2.24
370 371 1.071699 TGAAGGCACCTCACCACTTAC 59.928 52.381 0.00 0.00 0.00 2.34
371 372 1.348036 GAAGGCACCTCACCACTTACT 59.652 52.381 0.00 0.00 0.00 2.24
372 373 2.320681 AGGCACCTCACCACTTACTA 57.679 50.000 0.00 0.00 0.00 1.82
373 374 2.616524 AGGCACCTCACCACTTACTAA 58.383 47.619 0.00 0.00 0.00 2.24
374 375 2.976882 AGGCACCTCACCACTTACTAAA 59.023 45.455 0.00 0.00 0.00 1.85
375 376 3.587506 AGGCACCTCACCACTTACTAAAT 59.412 43.478 0.00 0.00 0.00 1.40
376 377 3.939592 GGCACCTCACCACTTACTAAATC 59.060 47.826 0.00 0.00 0.00 2.17
377 378 4.323562 GGCACCTCACCACTTACTAAATCT 60.324 45.833 0.00 0.00 0.00 2.40
378 379 4.631813 GCACCTCACCACTTACTAAATCTG 59.368 45.833 0.00 0.00 0.00 2.90
379 380 5.178797 CACCTCACCACTTACTAAATCTGG 58.821 45.833 0.00 0.00 0.00 3.86
380 381 4.225267 ACCTCACCACTTACTAAATCTGGG 59.775 45.833 0.00 0.00 0.00 4.45
381 382 4.225267 CCTCACCACTTACTAAATCTGGGT 59.775 45.833 0.00 0.00 0.00 4.51
382 383 5.416271 TCACCACTTACTAAATCTGGGTC 57.584 43.478 0.00 0.00 0.00 4.46
383 384 4.081862 TCACCACTTACTAAATCTGGGTCG 60.082 45.833 0.00 0.00 0.00 4.79
384 385 3.195661 CCACTTACTAAATCTGGGTCGC 58.804 50.000 0.00 0.00 0.00 5.19
385 386 3.118738 CCACTTACTAAATCTGGGTCGCT 60.119 47.826 0.00 0.00 0.00 4.93
386 387 4.113354 CACTTACTAAATCTGGGTCGCTC 58.887 47.826 0.00 0.00 0.00 5.03
387 388 3.767673 ACTTACTAAATCTGGGTCGCTCA 59.232 43.478 0.00 0.00 0.00 4.26
388 389 4.406003 ACTTACTAAATCTGGGTCGCTCAT 59.594 41.667 0.00 0.00 0.00 2.90
389 390 3.914426 ACTAAATCTGGGTCGCTCATT 57.086 42.857 0.00 0.00 0.00 2.57
390 391 3.798202 ACTAAATCTGGGTCGCTCATTC 58.202 45.455 0.00 0.00 0.00 2.67
391 392 1.656652 AAATCTGGGTCGCTCATTCG 58.343 50.000 0.00 0.00 0.00 3.34
392 393 0.537188 AATCTGGGTCGCTCATTCGT 59.463 50.000 0.00 0.00 0.00 3.85
393 394 0.179100 ATCTGGGTCGCTCATTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
394 395 1.215382 CTGGGTCGCTCATTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
395 396 0.389817 CTGGGTCGCTCATTCGTGAA 60.390 55.000 0.00 0.00 0.00 3.18
396 397 0.389817 TGGGTCGCTCATTCGTGAAG 60.390 55.000 0.00 0.00 0.00 3.02
397 398 0.108804 GGGTCGCTCATTCGTGAAGA 60.109 55.000 0.00 0.00 0.00 2.87
398 399 0.992802 GGTCGCTCATTCGTGAAGAC 59.007 55.000 0.00 0.00 0.00 3.01
399 400 1.402984 GGTCGCTCATTCGTGAAGACT 60.403 52.381 11.04 0.00 0.00 3.24
400 401 1.914700 GTCGCTCATTCGTGAAGACTC 59.085 52.381 0.00 0.00 0.00 3.36
401 402 1.813178 TCGCTCATTCGTGAAGACTCT 59.187 47.619 0.00 0.00 0.00 3.24
402 403 2.229062 TCGCTCATTCGTGAAGACTCTT 59.771 45.455 0.00 0.00 0.00 2.85
403 404 2.596419 CGCTCATTCGTGAAGACTCTTC 59.404 50.000 11.37 11.37 0.00 2.87
404 405 2.926838 GCTCATTCGTGAAGACTCTTCC 59.073 50.000 14.98 6.73 0.00 3.46
405 406 3.615110 GCTCATTCGTGAAGACTCTTCCA 60.615 47.826 14.98 2.41 0.00 3.53
406 407 4.753233 CTCATTCGTGAAGACTCTTCCAT 58.247 43.478 14.98 1.44 0.00 3.41
407 408 5.152623 TCATTCGTGAAGACTCTTCCATT 57.847 39.130 14.98 0.00 0.00 3.16
408 409 5.171476 TCATTCGTGAAGACTCTTCCATTC 58.829 41.667 14.98 4.11 0.00 2.67
409 410 3.594603 TCGTGAAGACTCTTCCATTCC 57.405 47.619 14.98 0.00 0.00 3.01
410 411 3.165875 TCGTGAAGACTCTTCCATTCCT 58.834 45.455 14.98 0.00 0.00 3.36
411 412 3.056536 TCGTGAAGACTCTTCCATTCCTG 60.057 47.826 14.98 0.00 0.00 3.86
412 413 3.056536 CGTGAAGACTCTTCCATTCCTGA 60.057 47.826 14.98 0.00 0.00 3.86
413 414 4.249661 GTGAAGACTCTTCCATTCCTGAC 58.750 47.826 14.98 2.01 0.00 3.51
414 415 4.020662 GTGAAGACTCTTCCATTCCTGACT 60.021 45.833 14.98 0.00 0.00 3.41
415 416 4.020751 TGAAGACTCTTCCATTCCTGACTG 60.021 45.833 14.98 0.00 0.00 3.51
416 417 3.515562 AGACTCTTCCATTCCTGACTGT 58.484 45.455 0.00 0.00 0.00 3.55
417 418 3.513515 AGACTCTTCCATTCCTGACTGTC 59.486 47.826 0.00 0.00 0.00 3.51
418 419 2.569404 ACTCTTCCATTCCTGACTGTCC 59.431 50.000 5.17 0.00 0.00 4.02
419 420 2.568956 CTCTTCCATTCCTGACTGTCCA 59.431 50.000 5.17 0.00 0.00 4.02
420 421 2.978978 TCTTCCATTCCTGACTGTCCAA 59.021 45.455 5.17 0.00 0.00 3.53
421 422 3.394274 TCTTCCATTCCTGACTGTCCAAA 59.606 43.478 5.17 0.00 0.00 3.28
422 423 4.043310 TCTTCCATTCCTGACTGTCCAAAT 59.957 41.667 5.17 0.00 0.00 2.32
423 424 5.250543 TCTTCCATTCCTGACTGTCCAAATA 59.749 40.000 5.17 0.00 0.00 1.40
424 425 5.715439 TCCATTCCTGACTGTCCAAATAT 57.285 39.130 5.17 0.00 0.00 1.28
425 426 6.078456 TCCATTCCTGACTGTCCAAATATT 57.922 37.500 5.17 0.00 0.00 1.28
426 427 6.122277 TCCATTCCTGACTGTCCAAATATTC 58.878 40.000 5.17 0.00 0.00 1.75
427 428 5.300286 CCATTCCTGACTGTCCAAATATTCC 59.700 44.000 5.17 0.00 0.00 3.01
428 429 5.512942 TTCCTGACTGTCCAAATATTCCA 57.487 39.130 5.17 0.00 0.00 3.53
429 430 5.102953 TCCTGACTGTCCAAATATTCCAG 57.897 43.478 5.17 0.00 0.00 3.86
430 431 3.629398 CCTGACTGTCCAAATATTCCAGC 59.371 47.826 5.17 0.00 0.00 4.85
431 432 4.264253 CTGACTGTCCAAATATTCCAGCA 58.736 43.478 5.17 0.00 0.00 4.41
432 433 4.661222 TGACTGTCCAAATATTCCAGCAA 58.339 39.130 5.17 0.00 0.00 3.91
433 434 4.701651 TGACTGTCCAAATATTCCAGCAAG 59.298 41.667 5.17 0.00 0.00 4.01
434 435 3.445096 ACTGTCCAAATATTCCAGCAAGC 59.555 43.478 0.00 0.00 0.00 4.01
435 436 2.760092 TGTCCAAATATTCCAGCAAGCC 59.240 45.455 0.00 0.00 0.00 4.35
436 437 2.760092 GTCCAAATATTCCAGCAAGCCA 59.240 45.455 0.00 0.00 0.00 4.75
437 438 3.385755 GTCCAAATATTCCAGCAAGCCAT 59.614 43.478 0.00 0.00 0.00 4.40
438 439 3.385433 TCCAAATATTCCAGCAAGCCATG 59.615 43.478 0.00 0.00 0.00 3.66
439 440 3.385433 CCAAATATTCCAGCAAGCCATGA 59.615 43.478 0.00 0.00 0.00 3.07
440 441 4.141892 CCAAATATTCCAGCAAGCCATGAA 60.142 41.667 0.00 0.00 0.00 2.57
441 442 5.421277 CAAATATTCCAGCAAGCCATGAAA 58.579 37.500 0.00 0.00 0.00 2.69
442 443 5.680594 AATATTCCAGCAAGCCATGAAAA 57.319 34.783 0.00 0.00 0.00 2.29
443 444 5.881923 ATATTCCAGCAAGCCATGAAAAT 57.118 34.783 0.00 0.00 0.00 1.82
444 445 3.598019 TTCCAGCAAGCCATGAAAATC 57.402 42.857 0.00 0.00 0.00 2.17
445 446 1.826720 TCCAGCAAGCCATGAAAATCC 59.173 47.619 0.00 0.00 0.00 3.01
446 447 1.470285 CCAGCAAGCCATGAAAATCCG 60.470 52.381 0.00 0.00 0.00 4.18
452 453 0.101219 GCCATGAAAATCCGCTCACC 59.899 55.000 0.00 0.00 0.00 4.02
462 463 2.391389 CCGCTCACCGAAGAAAGGC 61.391 63.158 0.00 0.00 40.02 4.35
465 466 0.519077 GCTCACCGAAGAAAGGCTTG 59.481 55.000 0.00 0.00 36.83 4.01
487 488 3.867984 GCCAAAGTCTCTTCTAGCAGCTT 60.868 47.826 0.00 0.00 0.00 3.74
503 504 4.549458 GCAGCTTGCACAAATTTTCTCTA 58.451 39.130 0.00 0.00 44.26 2.43
530 535 2.610833 CACCATGTGACCAATCGATCTG 59.389 50.000 0.00 0.00 35.23 2.90
593 598 7.881643 ACTATCATCGCAATAGATCAGAAAC 57.118 36.000 0.00 0.00 32.22 2.78
594 599 7.436933 ACTATCATCGCAATAGATCAGAAACA 58.563 34.615 0.00 0.00 32.22 2.83
595 600 6.782298 ATCATCGCAATAGATCAGAAACAG 57.218 37.500 0.00 0.00 0.00 3.16
596 601 5.906073 TCATCGCAATAGATCAGAAACAGA 58.094 37.500 0.00 0.00 0.00 3.41
597 602 6.340522 TCATCGCAATAGATCAGAAACAGAA 58.659 36.000 0.00 0.00 0.00 3.02
598 603 6.818142 TCATCGCAATAGATCAGAAACAGAAA 59.182 34.615 0.00 0.00 0.00 2.52
599 604 6.653273 TCGCAATAGATCAGAAACAGAAAG 57.347 37.500 0.00 0.00 0.00 2.62
600 605 6.166279 TCGCAATAGATCAGAAACAGAAAGT 58.834 36.000 0.00 0.00 0.00 2.66
601 606 6.650807 TCGCAATAGATCAGAAACAGAAAGTT 59.349 34.615 0.00 0.00 43.89 2.66
602 607 6.958193 CGCAATAGATCAGAAACAGAAAGTTC 59.042 38.462 0.00 0.00 40.26 3.01
603 608 7.247019 GCAATAGATCAGAAACAGAAAGTTCC 58.753 38.462 0.00 0.00 40.26 3.62
604 609 7.120432 GCAATAGATCAGAAACAGAAAGTTCCT 59.880 37.037 0.00 0.00 40.26 3.36
605 610 8.663911 CAATAGATCAGAAACAGAAAGTTCCTC 58.336 37.037 0.00 0.00 40.26 3.71
606 611 6.432403 AGATCAGAAACAGAAAGTTCCTCT 57.568 37.500 0.00 0.00 40.26 3.69
607 612 6.229733 AGATCAGAAACAGAAAGTTCCTCTG 58.770 40.000 3.47 3.47 42.49 3.35
617 622 7.183580 CAGAAAGTTCCTCTGTAAGTGAAAG 57.816 40.000 0.00 0.00 36.38 2.62
618 623 6.763610 CAGAAAGTTCCTCTGTAAGTGAAAGT 59.236 38.462 0.00 0.00 36.38 2.66
619 624 7.281100 CAGAAAGTTCCTCTGTAAGTGAAAGTT 59.719 37.037 0.00 0.00 36.38 2.66
620 625 7.496263 AGAAAGTTCCTCTGTAAGTGAAAGTTC 59.504 37.037 0.00 0.00 33.76 3.01
621 626 5.612351 AGTTCCTCTGTAAGTGAAAGTTCC 58.388 41.667 0.00 0.00 33.76 3.62
622 627 5.367060 AGTTCCTCTGTAAGTGAAAGTTCCT 59.633 40.000 0.00 0.00 33.76 3.36
623 628 5.470047 TCCTCTGTAAGTGAAAGTTCCTC 57.530 43.478 0.00 0.00 33.76 3.71
624 629 5.148502 TCCTCTGTAAGTGAAAGTTCCTCT 58.851 41.667 0.00 0.00 33.76 3.69
625 630 5.011125 TCCTCTGTAAGTGAAAGTTCCTCTG 59.989 44.000 0.00 0.00 33.76 3.35
626 631 5.221541 CCTCTGTAAGTGAAAGTTCCTCTGT 60.222 44.000 0.00 0.00 33.76 3.41
627 632 5.601662 TCTGTAAGTGAAAGTTCCTCTGTG 58.398 41.667 0.00 0.00 33.76 3.66
628 633 4.703897 TGTAAGTGAAAGTTCCTCTGTGG 58.296 43.478 0.00 0.00 37.10 4.17
629 634 2.262423 AGTGAAAGTTCCTCTGTGGC 57.738 50.000 0.00 0.00 35.26 5.01
630 635 1.771255 AGTGAAAGTTCCTCTGTGGCT 59.229 47.619 0.00 0.00 35.26 4.75
631 636 2.147150 GTGAAAGTTCCTCTGTGGCTC 58.853 52.381 0.00 0.00 35.26 4.70
632 637 1.270305 TGAAAGTTCCTCTGTGGCTCG 60.270 52.381 0.00 0.00 35.26 5.03
633 638 1.000955 GAAAGTTCCTCTGTGGCTCGA 59.999 52.381 0.00 0.00 35.26 4.04
634 639 1.270907 AAGTTCCTCTGTGGCTCGAT 58.729 50.000 0.00 0.00 35.26 3.59
635 640 0.820871 AGTTCCTCTGTGGCTCGATC 59.179 55.000 0.00 0.00 35.26 3.69
636 641 0.532573 GTTCCTCTGTGGCTCGATCA 59.467 55.000 0.00 0.00 35.26 2.92
637 642 0.820226 TTCCTCTGTGGCTCGATCAG 59.180 55.000 0.00 0.00 35.26 2.90
638 643 0.034089 TCCTCTGTGGCTCGATCAGA 60.034 55.000 0.00 8.61 36.85 3.27
639 644 0.820226 CCTCTGTGGCTCGATCAGAA 59.180 55.000 9.68 0.00 37.68 3.02
640 645 1.205655 CCTCTGTGGCTCGATCAGAAA 59.794 52.381 9.68 0.00 37.68 2.52
654 659 3.622166 TCAGAAATTACGGACCTTCCC 57.378 47.619 0.00 0.00 31.13 3.97
669 674 1.407258 CTTCCCAGACCTCTTAGCGAG 59.593 57.143 0.00 0.00 39.57 5.03
706 711 1.282570 CACACATCGCCAACCACAC 59.717 57.895 0.00 0.00 0.00 3.82
707 712 1.153066 ACACATCGCCAACCACACA 60.153 52.632 0.00 0.00 0.00 3.72
708 713 0.749818 ACACATCGCCAACCACACAA 60.750 50.000 0.00 0.00 0.00 3.33
709 714 0.317770 CACATCGCCAACCACACAAC 60.318 55.000 0.00 0.00 0.00 3.32
710 715 0.465460 ACATCGCCAACCACACAACT 60.465 50.000 0.00 0.00 0.00 3.16
711 716 1.202710 ACATCGCCAACCACACAACTA 60.203 47.619 0.00 0.00 0.00 2.24
712 717 1.196808 CATCGCCAACCACACAACTAC 59.803 52.381 0.00 0.00 0.00 2.73
713 718 0.178301 TCGCCAACCACACAACTACA 59.822 50.000 0.00 0.00 0.00 2.74
729 734 3.379452 ACTACAGGAATGAGAAGAGGGG 58.621 50.000 0.00 0.00 0.00 4.79
843 850 6.072112 TCTGTTCAAGGCAATAAAGAACAC 57.928 37.500 0.00 0.00 42.35 3.32
1022 1034 3.958860 AGTGCCCTTCCAAGCGCT 61.959 61.111 2.64 2.64 44.68 5.92
1168 1185 3.226347 GTCGGCTATTTAATTGCATCGC 58.774 45.455 12.72 2.66 32.56 4.58
1240 1257 5.062183 TGTTTTATGTTTGAGATCGAGCGAG 59.938 40.000 0.00 0.00 0.00 5.03
1491 1517 4.406173 CCGAGCTCGTGCGTGTCT 62.406 66.667 32.41 0.00 45.42 3.41
1641 1667 0.888619 TGCTCCTCGACTTCAACGAT 59.111 50.000 0.00 0.00 39.02 3.73
1695 1721 2.282180 GGCAAAGTCGGCAAGGGA 60.282 61.111 0.00 0.00 0.00 4.20
1778 1804 2.727647 GCCTAGCTGCGATCGACG 60.728 66.667 21.57 9.58 45.66 5.12
1779 1805 3.023118 CCTAGCTGCGATCGACGA 58.977 61.111 21.57 0.00 45.77 4.20
1780 1806 1.082431 CCTAGCTGCGATCGACGAG 60.082 63.158 21.57 11.86 45.77 4.18
1781 1807 1.724234 CTAGCTGCGATCGACGAGC 60.724 63.158 21.57 20.83 45.77 5.03
1782 1808 3.513438 AGCTGCGATCGACGAGCT 61.513 61.111 23.31 23.31 44.12 4.09
1783 1809 0.878961 TAGCTGCGATCGACGAGCTA 60.879 55.000 26.86 26.86 45.60 3.32
1784 1810 2.006587 GCTGCGATCGACGAGCTAC 61.007 63.158 21.57 3.86 45.77 3.58
1785 1811 1.644372 CTGCGATCGACGAGCTACT 59.356 57.895 21.57 0.00 45.77 2.57
1806 1832 1.962100 ACCGTCCTCTTTCGTTTCTCT 59.038 47.619 0.00 0.00 0.00 3.10
2058 2091 6.663734 AGGTTTTATAGAAGGCAGTAATGCT 58.336 36.000 15.61 0.00 34.73 3.79
2162 2195 1.921887 TCATTTCATACGGACGAACGC 59.078 47.619 0.00 0.00 37.37 4.84
2165 2198 1.597797 TTCATACGGACGAACGCCCT 61.598 55.000 0.00 0.00 37.37 5.19
2362 2414 3.681897 ACTACTACGTACTCAGAACACGG 59.318 47.826 8.03 0.00 39.91 4.94
2384 2436 7.225341 CACGGAAAGATCATCATGAGATTAACA 59.775 37.037 0.09 0.00 30.20 2.41
2385 2437 7.935755 ACGGAAAGATCATCATGAGATTAACAT 59.064 33.333 0.09 0.00 30.20 2.71
2386 2438 8.228464 CGGAAAGATCATCATGAGATTAACATG 58.772 37.037 0.09 0.00 44.20 3.21
2577 2631 0.179048 CAGGCACGCATGGGAAGATA 60.179 55.000 17.76 0.00 0.00 1.98
2704 2758 1.141881 GCATCGATCGTGTCAGGGT 59.858 57.895 15.94 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.074648 TCATCTGTTGGAGTTGGGTATTTTT 58.925 36.000 0.00 0.00 0.00 1.94
40 41 5.640147 TCATCTGTTGGAGTTGGGTATTTT 58.360 37.500 0.00 0.00 0.00 1.82
41 42 5.255397 TCATCTGTTGGAGTTGGGTATTT 57.745 39.130 0.00 0.00 0.00 1.40
42 43 4.927267 TCATCTGTTGGAGTTGGGTATT 57.073 40.909 0.00 0.00 0.00 1.89
43 44 4.474651 TCATCATCTGTTGGAGTTGGGTAT 59.525 41.667 0.00 0.00 0.00 2.73
44 45 3.843619 TCATCATCTGTTGGAGTTGGGTA 59.156 43.478 0.00 0.00 0.00 3.69
45 46 2.644299 TCATCATCTGTTGGAGTTGGGT 59.356 45.455 0.00 0.00 0.00 4.51
46 47 3.354948 TCATCATCTGTTGGAGTTGGG 57.645 47.619 0.00 0.00 0.00 4.12
47 48 7.578310 ATTATTCATCATCTGTTGGAGTTGG 57.422 36.000 0.00 0.00 0.00 3.77
48 49 8.680001 TCAATTATTCATCATCTGTTGGAGTTG 58.320 33.333 0.00 0.00 0.00 3.16
49 50 8.812513 TCAATTATTCATCATCTGTTGGAGTT 57.187 30.769 0.00 0.00 0.00 3.01
50 51 8.847196 CATCAATTATTCATCATCTGTTGGAGT 58.153 33.333 0.00 0.00 0.00 3.85
51 52 9.063615 TCATCAATTATTCATCATCTGTTGGAG 57.936 33.333 0.00 0.00 0.00 3.86
52 53 8.983702 TCATCAATTATTCATCATCTGTTGGA 57.016 30.769 0.00 0.00 0.00 3.53
53 54 9.626045 CATCATCAATTATTCATCATCTGTTGG 57.374 33.333 0.00 0.00 0.00 3.77
56 57 9.569122 TGTCATCATCAATTATTCATCATCTGT 57.431 29.630 0.00 0.00 0.00 3.41
65 66 9.443283 GCACTAGTTTGTCATCATCAATTATTC 57.557 33.333 0.00 0.00 0.00 1.75
66 67 9.182214 AGCACTAGTTTGTCATCATCAATTATT 57.818 29.630 0.00 0.00 0.00 1.40
67 68 8.743085 AGCACTAGTTTGTCATCATCAATTAT 57.257 30.769 0.00 0.00 0.00 1.28
68 69 7.280876 GGAGCACTAGTTTGTCATCATCAATTA 59.719 37.037 0.00 0.00 0.00 1.40
69 70 6.094603 GGAGCACTAGTTTGTCATCATCAATT 59.905 38.462 0.00 0.00 0.00 2.32
70 71 5.587844 GGAGCACTAGTTTGTCATCATCAAT 59.412 40.000 0.00 0.00 0.00 2.57
71 72 4.937620 GGAGCACTAGTTTGTCATCATCAA 59.062 41.667 0.00 0.00 0.00 2.57
72 73 4.020307 TGGAGCACTAGTTTGTCATCATCA 60.020 41.667 0.00 0.00 0.00 3.07
73 74 4.507710 TGGAGCACTAGTTTGTCATCATC 58.492 43.478 0.00 0.00 0.00 2.92
74 75 4.558226 TGGAGCACTAGTTTGTCATCAT 57.442 40.909 0.00 0.00 0.00 2.45
75 76 4.065088 GTTGGAGCACTAGTTTGTCATCA 58.935 43.478 0.00 0.00 0.00 3.07
76 77 4.065088 TGTTGGAGCACTAGTTTGTCATC 58.935 43.478 0.00 0.00 0.00 2.92
77 78 4.067896 CTGTTGGAGCACTAGTTTGTCAT 58.932 43.478 0.00 0.00 0.00 3.06
78 79 3.133901 TCTGTTGGAGCACTAGTTTGTCA 59.866 43.478 0.00 0.00 0.00 3.58
79 80 3.728845 TCTGTTGGAGCACTAGTTTGTC 58.271 45.455 0.00 0.00 0.00 3.18
80 81 3.838244 TCTGTTGGAGCACTAGTTTGT 57.162 42.857 0.00 0.00 0.00 2.83
81 82 4.318332 TCATCTGTTGGAGCACTAGTTTG 58.682 43.478 0.00 0.00 0.00 2.93
82 83 4.623932 TCATCTGTTGGAGCACTAGTTT 57.376 40.909 0.00 0.00 0.00 2.66
83 84 4.019860 ACATCATCTGTTGGAGCACTAGTT 60.020 41.667 0.00 0.00 32.90 2.24
84 85 3.517100 ACATCATCTGTTGGAGCACTAGT 59.483 43.478 0.00 0.00 32.90 2.57
85 86 4.134379 ACATCATCTGTTGGAGCACTAG 57.866 45.455 0.00 0.00 32.90 2.57
86 87 5.675684 TTACATCATCTGTTGGAGCACTA 57.324 39.130 0.00 0.00 39.39 2.74
87 88 4.558226 TTACATCATCTGTTGGAGCACT 57.442 40.909 0.00 0.00 39.39 4.40
88 89 5.182001 AGTTTTACATCATCTGTTGGAGCAC 59.818 40.000 0.00 0.00 39.39 4.40
89 90 5.316167 AGTTTTACATCATCTGTTGGAGCA 58.684 37.500 0.00 0.00 39.39 4.26
90 91 5.886960 AGTTTTACATCATCTGTTGGAGC 57.113 39.130 0.00 0.00 39.39 4.70
91 92 9.088512 GTACTAGTTTTACATCATCTGTTGGAG 57.911 37.037 0.00 0.00 39.39 3.86
92 93 8.812972 AGTACTAGTTTTACATCATCTGTTGGA 58.187 33.333 0.00 0.00 39.39 3.53
141 142 3.328343 TGCCCTACAGTAGCTGGTAAAAA 59.672 43.478 1.50 0.00 35.51 1.94
142 143 2.907696 TGCCCTACAGTAGCTGGTAAAA 59.092 45.455 1.50 0.00 35.51 1.52
143 144 2.500098 CTGCCCTACAGTAGCTGGTAAA 59.500 50.000 1.50 0.00 41.86 2.01
144 145 2.108168 CTGCCCTACAGTAGCTGGTAA 58.892 52.381 1.50 0.00 41.86 2.85
145 146 1.776662 CTGCCCTACAGTAGCTGGTA 58.223 55.000 1.50 0.00 41.86 3.25
146 147 2.596776 CTGCCCTACAGTAGCTGGT 58.403 57.895 1.50 0.00 41.86 4.00
160 161 0.825840 TAAAACTGTGGGGTGCTGCC 60.826 55.000 0.00 0.00 0.00 4.85
161 162 1.036707 TTAAAACTGTGGGGTGCTGC 58.963 50.000 0.00 0.00 0.00 5.25
162 163 2.306847 AGTTAAAACTGTGGGGTGCTG 58.693 47.619 0.00 0.00 37.98 4.41
163 164 2.748209 AGTTAAAACTGTGGGGTGCT 57.252 45.000 0.00 0.00 37.98 4.40
164 165 3.812156 AAAGTTAAAACTGTGGGGTGC 57.188 42.857 0.00 0.00 39.66 5.01
165 166 9.990360 AATAATAAAAGTTAAAACTGTGGGGTG 57.010 29.630 0.00 0.00 39.66 4.61
217 218 8.462016 GCTTTTCATGTAATTTAGTCTCCATGT 58.538 33.333 0.00 0.00 33.27 3.21
218 219 8.680903 AGCTTTTCATGTAATTTAGTCTCCATG 58.319 33.333 0.00 0.00 0.00 3.66
219 220 8.814038 AGCTTTTCATGTAATTTAGTCTCCAT 57.186 30.769 0.00 0.00 0.00 3.41
220 221 9.383519 CTAGCTTTTCATGTAATTTAGTCTCCA 57.616 33.333 0.00 0.00 0.00 3.86
221 222 9.601217 TCTAGCTTTTCATGTAATTTAGTCTCC 57.399 33.333 0.00 0.00 0.00 3.71
231 232 9.890629 AGTGATGTAATCTAGCTTTTCATGTAA 57.109 29.630 0.00 0.00 45.81 2.41
232 233 9.534565 GAGTGATGTAATCTAGCTTTTCATGTA 57.465 33.333 0.00 0.00 45.81 2.29
233 234 8.043113 TGAGTGATGTAATCTAGCTTTTCATGT 58.957 33.333 0.00 0.00 45.81 3.21
234 235 8.429493 TGAGTGATGTAATCTAGCTTTTCATG 57.571 34.615 0.00 0.00 45.81 3.07
235 236 8.887717 GTTGAGTGATGTAATCTAGCTTTTCAT 58.112 33.333 0.00 0.00 45.81 2.57
236 237 8.097038 AGTTGAGTGATGTAATCTAGCTTTTCA 58.903 33.333 0.00 0.00 45.81 2.69
237 238 8.485976 AGTTGAGTGATGTAATCTAGCTTTTC 57.514 34.615 0.00 0.00 45.81 2.29
238 239 8.854614 AAGTTGAGTGATGTAATCTAGCTTTT 57.145 30.769 0.00 0.00 45.81 2.27
239 240 9.944376 TTAAGTTGAGTGATGTAATCTAGCTTT 57.056 29.630 0.00 0.00 45.81 3.51
240 241 9.593134 CTTAAGTTGAGTGATGTAATCTAGCTT 57.407 33.333 0.00 0.00 45.81 3.74
241 242 8.200792 CCTTAAGTTGAGTGATGTAATCTAGCT 58.799 37.037 0.97 0.00 45.81 3.32
242 243 7.982354 ACCTTAAGTTGAGTGATGTAATCTAGC 59.018 37.037 0.97 0.00 45.81 3.42
243 244 9.307121 CACCTTAAGTTGAGTGATGTAATCTAG 57.693 37.037 0.97 0.00 45.81 2.43
244 245 8.258007 CCACCTTAAGTTGAGTGATGTAATCTA 58.742 37.037 0.87 0.00 45.81 1.98
245 246 7.106239 CCACCTTAAGTTGAGTGATGTAATCT 58.894 38.462 0.87 0.00 45.81 2.40
246 247 6.879458 ACCACCTTAAGTTGAGTGATGTAATC 59.121 38.462 0.87 0.00 45.83 1.75
247 248 6.779860 ACCACCTTAAGTTGAGTGATGTAAT 58.220 36.000 0.87 0.00 31.79 1.89
248 249 6.182507 ACCACCTTAAGTTGAGTGATGTAA 57.817 37.500 0.87 0.00 31.79 2.41
249 250 5.818678 ACCACCTTAAGTTGAGTGATGTA 57.181 39.130 0.87 0.00 31.79 2.29
250 251 4.706842 ACCACCTTAAGTTGAGTGATGT 57.293 40.909 0.87 0.00 31.79 3.06
251 252 5.046591 TCCTACCACCTTAAGTTGAGTGATG 60.047 44.000 0.87 0.00 31.79 3.07
252 253 5.091552 TCCTACCACCTTAAGTTGAGTGAT 58.908 41.667 0.87 0.00 31.79 3.06
253 254 4.485875 TCCTACCACCTTAAGTTGAGTGA 58.514 43.478 0.87 0.00 31.79 3.41
254 255 4.884668 TCCTACCACCTTAAGTTGAGTG 57.115 45.455 0.87 2.35 0.00 3.51
255 256 5.605488 TCTTTCCTACCACCTTAAGTTGAGT 59.395 40.000 0.87 1.04 0.00 3.41
256 257 6.110411 TCTTTCCTACCACCTTAAGTTGAG 57.890 41.667 0.87 0.00 0.00 3.02
257 258 6.697641 ATCTTTCCTACCACCTTAAGTTGA 57.302 37.500 0.87 0.00 0.00 3.18
258 259 6.822170 GGTATCTTTCCTACCACCTTAAGTTG 59.178 42.308 0.97 0.00 38.81 3.16
259 260 6.069789 GGGTATCTTTCCTACCACCTTAAGTT 60.070 42.308 0.97 0.00 40.41 2.66
260 261 5.427806 GGGTATCTTTCCTACCACCTTAAGT 59.572 44.000 0.97 0.00 40.41 2.24
261 262 5.452917 CGGGTATCTTTCCTACCACCTTAAG 60.453 48.000 0.00 0.00 40.41 1.85
262 263 4.406649 CGGGTATCTTTCCTACCACCTTAA 59.593 45.833 2.25 0.00 40.41 1.85
263 264 3.962718 CGGGTATCTTTCCTACCACCTTA 59.037 47.826 2.25 0.00 40.41 2.69
264 265 2.770232 CGGGTATCTTTCCTACCACCTT 59.230 50.000 2.25 0.00 40.41 3.50
265 266 2.292719 ACGGGTATCTTTCCTACCACCT 60.293 50.000 2.25 0.00 40.41 4.00
266 267 2.102084 GACGGGTATCTTTCCTACCACC 59.898 54.545 2.25 0.00 40.41 4.61
267 268 3.029570 AGACGGGTATCTTTCCTACCAC 58.970 50.000 2.25 0.00 40.41 4.16
268 269 3.393426 AGACGGGTATCTTTCCTACCA 57.607 47.619 2.25 0.00 40.41 3.25
269 270 6.416631 AATTAGACGGGTATCTTTCCTACC 57.583 41.667 0.00 0.00 38.33 3.18
270 271 8.175925 ACTAATTAGACGGGTATCTTTCCTAC 57.824 38.462 19.38 0.00 0.00 3.18
271 272 8.773033 AACTAATTAGACGGGTATCTTTCCTA 57.227 34.615 19.38 0.00 0.00 2.94
272 273 7.343833 TGAACTAATTAGACGGGTATCTTTCCT 59.656 37.037 19.38 0.00 0.00 3.36
273 274 7.495055 TGAACTAATTAGACGGGTATCTTTCC 58.505 38.462 19.38 0.00 0.00 3.13
274 275 9.194271 GATGAACTAATTAGACGGGTATCTTTC 57.806 37.037 19.38 8.46 0.00 2.62
275 276 8.925338 AGATGAACTAATTAGACGGGTATCTTT 58.075 33.333 19.38 0.00 0.00 2.52
276 277 8.480133 AGATGAACTAATTAGACGGGTATCTT 57.520 34.615 19.38 0.00 0.00 2.40
277 278 7.945664 AGAGATGAACTAATTAGACGGGTATCT 59.054 37.037 19.38 15.71 0.00 1.98
278 279 8.113173 AGAGATGAACTAATTAGACGGGTATC 57.887 38.462 19.38 12.11 0.00 2.24
279 280 9.756571 ATAGAGATGAACTAATTAGACGGGTAT 57.243 33.333 19.38 4.70 0.00 2.73
281 282 9.756571 ATATAGAGATGAACTAATTAGACGGGT 57.243 33.333 19.38 1.24 0.00 5.28
302 303 9.921637 GGTTCAAAGGATCAAGAGTAGATATAG 57.078 37.037 0.00 0.00 0.00 1.31
303 304 9.434275 TGGTTCAAAGGATCAAGAGTAGATATA 57.566 33.333 0.00 0.00 0.00 0.86
304 305 8.324191 TGGTTCAAAGGATCAAGAGTAGATAT 57.676 34.615 0.00 0.00 0.00 1.63
305 306 7.633772 GCTGGTTCAAAGGATCAAGAGTAGATA 60.634 40.741 0.00 0.00 0.00 1.98
306 307 6.627087 TGGTTCAAAGGATCAAGAGTAGAT 57.373 37.500 0.00 0.00 0.00 1.98
307 308 5.569630 GCTGGTTCAAAGGATCAAGAGTAGA 60.570 44.000 0.00 0.00 0.00 2.59
308 309 4.633565 GCTGGTTCAAAGGATCAAGAGTAG 59.366 45.833 0.00 0.00 0.00 2.57
309 310 4.041567 TGCTGGTTCAAAGGATCAAGAGTA 59.958 41.667 0.00 0.00 0.00 2.59
310 311 3.181440 TGCTGGTTCAAAGGATCAAGAGT 60.181 43.478 0.00 0.00 0.00 3.24
311 312 3.415212 TGCTGGTTCAAAGGATCAAGAG 58.585 45.455 0.00 0.00 0.00 2.85
312 313 3.507162 TGCTGGTTCAAAGGATCAAGA 57.493 42.857 0.00 0.00 0.00 3.02
313 314 3.057033 CCTTGCTGGTTCAAAGGATCAAG 60.057 47.826 0.00 0.00 0.00 3.02
314 315 2.892852 CCTTGCTGGTTCAAAGGATCAA 59.107 45.455 0.00 0.00 0.00 2.57
315 316 2.108075 TCCTTGCTGGTTCAAAGGATCA 59.892 45.455 0.00 0.00 37.07 2.92
316 317 2.795329 TCCTTGCTGGTTCAAAGGATC 58.205 47.619 0.00 0.00 37.07 3.36
317 318 2.978156 TCCTTGCTGGTTCAAAGGAT 57.022 45.000 0.00 0.00 37.07 3.24
318 319 2.978156 ATCCTTGCTGGTTCAAAGGA 57.022 45.000 5.88 5.88 37.07 3.36
319 320 7.884877 TGATATATATCCTTGCTGGTTCAAAGG 59.115 37.037 18.12 0.00 37.07 3.11
320 321 8.853077 TGATATATATCCTTGCTGGTTCAAAG 57.147 34.615 18.12 0.00 37.07 2.77
321 322 9.234827 CATGATATATATCCTTGCTGGTTCAAA 57.765 33.333 18.12 0.00 37.07 2.69
322 323 8.605065 TCATGATATATATCCTTGCTGGTTCAA 58.395 33.333 18.12 0.00 37.07 2.69
323 324 8.149631 TCATGATATATATCCTTGCTGGTTCA 57.850 34.615 18.12 0.00 37.07 3.18
324 325 9.624373 ATTCATGATATATATCCTTGCTGGTTC 57.376 33.333 18.12 0.00 37.07 3.62
325 326 9.404848 CATTCATGATATATATCCTTGCTGGTT 57.595 33.333 18.12 1.05 37.07 3.67
326 327 8.775151 TCATTCATGATATATATCCTTGCTGGT 58.225 33.333 18.12 3.24 37.07 4.00
327 328 9.623000 TTCATTCATGATATATATCCTTGCTGG 57.377 33.333 18.12 9.28 36.56 4.85
329 330 9.848710 CCTTCATTCATGATATATATCCTTGCT 57.151 33.333 18.12 6.22 36.56 3.91
330 331 8.566260 GCCTTCATTCATGATATATATCCTTGC 58.434 37.037 18.12 5.03 36.56 4.01
331 332 9.623000 TGCCTTCATTCATGATATATATCCTTG 57.377 33.333 18.12 15.28 36.56 3.61
332 333 9.624373 GTGCCTTCATTCATGATATATATCCTT 57.376 33.333 18.12 5.13 36.56 3.36
333 334 8.216423 GGTGCCTTCATTCATGATATATATCCT 58.784 37.037 18.12 7.39 36.56 3.24
334 335 8.216423 AGGTGCCTTCATTCATGATATATATCC 58.784 37.037 18.12 3.42 36.56 2.59
335 336 9.270640 GAGGTGCCTTCATTCATGATATATATC 57.729 37.037 14.77 14.77 36.56 1.63
336 337 8.775151 TGAGGTGCCTTCATTCATGATATATAT 58.225 33.333 0.00 0.00 36.56 0.86
337 338 8.043113 GTGAGGTGCCTTCATTCATGATATATA 58.957 37.037 0.00 0.00 36.56 0.86
338 339 6.883217 GTGAGGTGCCTTCATTCATGATATAT 59.117 38.462 0.00 0.00 36.56 0.86
339 340 6.233434 GTGAGGTGCCTTCATTCATGATATA 58.767 40.000 0.00 0.00 36.56 0.86
340 341 5.068636 GTGAGGTGCCTTCATTCATGATAT 58.931 41.667 0.00 0.00 36.56 1.63
341 342 4.454678 GTGAGGTGCCTTCATTCATGATA 58.545 43.478 0.00 0.00 36.56 2.15
342 343 3.285484 GTGAGGTGCCTTCATTCATGAT 58.715 45.455 0.00 0.00 36.56 2.45
343 344 2.618816 GGTGAGGTGCCTTCATTCATGA 60.619 50.000 0.00 0.00 34.44 3.07
344 345 1.747355 GGTGAGGTGCCTTCATTCATG 59.253 52.381 0.00 0.00 0.00 3.07
345 346 1.355381 TGGTGAGGTGCCTTCATTCAT 59.645 47.619 0.00 0.00 0.00 2.57
346 347 0.770499 TGGTGAGGTGCCTTCATTCA 59.230 50.000 0.00 0.00 0.00 2.57
347 348 1.168714 GTGGTGAGGTGCCTTCATTC 58.831 55.000 0.00 0.00 0.00 2.67
348 349 0.773644 AGTGGTGAGGTGCCTTCATT 59.226 50.000 0.00 0.00 0.00 2.57
349 350 0.773644 AAGTGGTGAGGTGCCTTCAT 59.226 50.000 0.00 0.00 0.00 2.57
350 351 1.071699 GTAAGTGGTGAGGTGCCTTCA 59.928 52.381 0.00 0.00 0.00 3.02
351 352 1.348036 AGTAAGTGGTGAGGTGCCTTC 59.652 52.381 0.00 0.00 0.00 3.46
352 353 1.435256 AGTAAGTGGTGAGGTGCCTT 58.565 50.000 0.00 0.00 0.00 4.35
353 354 2.320681 TAGTAAGTGGTGAGGTGCCT 57.679 50.000 0.00 0.00 0.00 4.75
354 355 3.412237 TTTAGTAAGTGGTGAGGTGCC 57.588 47.619 0.00 0.00 0.00 5.01
355 356 4.631813 CAGATTTAGTAAGTGGTGAGGTGC 59.368 45.833 0.00 0.00 0.00 5.01
356 357 5.178797 CCAGATTTAGTAAGTGGTGAGGTG 58.821 45.833 1.55 0.00 0.00 4.00
357 358 4.225267 CCCAGATTTAGTAAGTGGTGAGGT 59.775 45.833 7.06 0.00 0.00 3.85
358 359 4.225267 ACCCAGATTTAGTAAGTGGTGAGG 59.775 45.833 7.06 0.00 0.00 3.86
359 360 5.420409 GACCCAGATTTAGTAAGTGGTGAG 58.580 45.833 7.06 0.00 0.00 3.51
360 361 4.081862 CGACCCAGATTTAGTAAGTGGTGA 60.082 45.833 7.06 0.00 0.00 4.02
361 362 4.181578 CGACCCAGATTTAGTAAGTGGTG 58.818 47.826 7.06 3.05 0.00 4.17
362 363 3.369157 GCGACCCAGATTTAGTAAGTGGT 60.369 47.826 0.00 0.00 0.00 4.16
363 364 3.118738 AGCGACCCAGATTTAGTAAGTGG 60.119 47.826 0.00 2.42 0.00 4.00
364 365 4.113354 GAGCGACCCAGATTTAGTAAGTG 58.887 47.826 0.00 0.00 0.00 3.16
365 366 3.767673 TGAGCGACCCAGATTTAGTAAGT 59.232 43.478 0.00 0.00 0.00 2.24
366 367 4.386867 TGAGCGACCCAGATTTAGTAAG 57.613 45.455 0.00 0.00 0.00 2.34
367 368 5.353394 AATGAGCGACCCAGATTTAGTAA 57.647 39.130 0.00 0.00 0.00 2.24
368 369 4.499188 CGAATGAGCGACCCAGATTTAGTA 60.499 45.833 0.00 0.00 0.00 1.82
369 370 3.738281 CGAATGAGCGACCCAGATTTAGT 60.738 47.826 0.00 0.00 0.00 2.24
370 371 2.797156 CGAATGAGCGACCCAGATTTAG 59.203 50.000 0.00 0.00 0.00 1.85
371 372 2.167693 ACGAATGAGCGACCCAGATTTA 59.832 45.455 0.00 0.00 34.83 1.40
372 373 1.066143 ACGAATGAGCGACCCAGATTT 60.066 47.619 0.00 0.00 34.83 2.17
373 374 0.537188 ACGAATGAGCGACCCAGATT 59.463 50.000 0.00 0.00 34.83 2.40
374 375 0.179100 CACGAATGAGCGACCCAGAT 60.179 55.000 0.00 0.00 34.83 2.90
375 376 1.215382 CACGAATGAGCGACCCAGA 59.785 57.895 0.00 0.00 34.83 3.86
376 377 0.389817 TTCACGAATGAGCGACCCAG 60.390 55.000 0.00 0.00 35.83 4.45
377 378 0.389817 CTTCACGAATGAGCGACCCA 60.390 55.000 0.00 0.00 35.83 4.51
378 379 0.108804 TCTTCACGAATGAGCGACCC 60.109 55.000 0.00 0.00 35.83 4.46
379 380 0.992802 GTCTTCACGAATGAGCGACC 59.007 55.000 0.00 0.00 35.83 4.79
380 381 1.914700 GAGTCTTCACGAATGAGCGAC 59.085 52.381 0.00 0.00 37.36 5.19
381 382 1.813178 AGAGTCTTCACGAATGAGCGA 59.187 47.619 0.00 0.00 35.83 4.93
382 383 2.270275 AGAGTCTTCACGAATGAGCG 57.730 50.000 0.00 0.00 35.83 5.03
383 384 2.926838 GGAAGAGTCTTCACGAATGAGC 59.073 50.000 29.36 9.21 35.83 4.26
384 385 4.179926 TGGAAGAGTCTTCACGAATGAG 57.820 45.455 29.36 0.00 35.83 2.90
385 386 4.808414 ATGGAAGAGTCTTCACGAATGA 57.192 40.909 29.36 8.39 0.00 2.57
386 387 4.331168 GGAATGGAAGAGTCTTCACGAATG 59.669 45.833 29.36 0.00 0.00 2.67
387 388 4.223923 AGGAATGGAAGAGTCTTCACGAAT 59.776 41.667 29.36 16.25 0.00 3.34
388 389 3.578716 AGGAATGGAAGAGTCTTCACGAA 59.421 43.478 29.36 14.92 0.00 3.85
389 390 3.056536 CAGGAATGGAAGAGTCTTCACGA 60.057 47.826 29.36 15.74 0.00 4.35
390 391 3.056536 TCAGGAATGGAAGAGTCTTCACG 60.057 47.826 29.36 12.21 0.00 4.35
391 392 4.020662 AGTCAGGAATGGAAGAGTCTTCAC 60.021 45.833 29.36 20.18 0.00 3.18
392 393 4.020751 CAGTCAGGAATGGAAGAGTCTTCA 60.021 45.833 29.36 17.96 0.00 3.02
393 394 4.020662 ACAGTCAGGAATGGAAGAGTCTTC 60.021 45.833 22.47 22.47 0.00 2.87
394 395 3.906846 ACAGTCAGGAATGGAAGAGTCTT 59.093 43.478 4.68 4.68 0.00 3.01
395 396 3.513515 GACAGTCAGGAATGGAAGAGTCT 59.486 47.826 1.62 0.00 0.00 3.24
396 397 3.368948 GGACAGTCAGGAATGGAAGAGTC 60.369 52.174 2.17 0.00 0.00 3.36
397 398 2.569404 GGACAGTCAGGAATGGAAGAGT 59.431 50.000 2.17 0.00 0.00 3.24
398 399 2.568956 TGGACAGTCAGGAATGGAAGAG 59.431 50.000 2.17 0.00 0.00 2.85
399 400 2.619931 TGGACAGTCAGGAATGGAAGA 58.380 47.619 2.17 0.00 0.00 2.87
400 401 3.423539 TTGGACAGTCAGGAATGGAAG 57.576 47.619 2.17 0.00 0.00 3.46
401 402 3.874383 TTTGGACAGTCAGGAATGGAA 57.126 42.857 2.17 0.00 0.00 3.53
402 403 5.715439 ATATTTGGACAGTCAGGAATGGA 57.285 39.130 2.17 0.00 0.00 3.41
403 404 5.300286 GGAATATTTGGACAGTCAGGAATGG 59.700 44.000 2.17 0.00 0.00 3.16
404 405 5.887598 TGGAATATTTGGACAGTCAGGAATG 59.112 40.000 2.17 0.00 0.00 2.67
405 406 6.078456 TGGAATATTTGGACAGTCAGGAAT 57.922 37.500 2.17 2.18 0.00 3.01
406 407 5.500234 CTGGAATATTTGGACAGTCAGGAA 58.500 41.667 2.17 0.00 0.00 3.36
407 408 4.626287 GCTGGAATATTTGGACAGTCAGGA 60.626 45.833 2.17 0.00 0.00 3.86
408 409 3.629398 GCTGGAATATTTGGACAGTCAGG 59.371 47.826 2.17 0.00 0.00 3.86
409 410 4.264253 TGCTGGAATATTTGGACAGTCAG 58.736 43.478 2.17 0.00 0.00 3.51
410 411 4.299586 TGCTGGAATATTTGGACAGTCA 57.700 40.909 2.17 7.34 0.00 3.41
411 412 4.439289 GCTTGCTGGAATATTTGGACAGTC 60.439 45.833 0.00 0.00 0.00 3.51
412 413 3.445096 GCTTGCTGGAATATTTGGACAGT 59.555 43.478 10.20 0.00 0.00 3.55
413 414 3.181483 GGCTTGCTGGAATATTTGGACAG 60.181 47.826 0.00 0.00 0.00 3.51
414 415 2.760092 GGCTTGCTGGAATATTTGGACA 59.240 45.455 0.00 0.00 0.00 4.02
415 416 2.760092 TGGCTTGCTGGAATATTTGGAC 59.240 45.455 0.00 0.00 0.00 4.02
416 417 3.098774 TGGCTTGCTGGAATATTTGGA 57.901 42.857 0.00 0.00 0.00 3.53
417 418 3.385433 TCATGGCTTGCTGGAATATTTGG 59.615 43.478 0.00 0.00 0.00 3.28
418 419 4.659111 TCATGGCTTGCTGGAATATTTG 57.341 40.909 0.00 0.00 0.00 2.32
419 420 5.680594 TTTCATGGCTTGCTGGAATATTT 57.319 34.783 0.00 0.00 0.00 1.40
420 421 5.680594 TTTTCATGGCTTGCTGGAATATT 57.319 34.783 0.00 0.00 0.00 1.28
421 422 5.221581 GGATTTTCATGGCTTGCTGGAATAT 60.222 40.000 0.00 0.00 0.00 1.28
422 423 4.099881 GGATTTTCATGGCTTGCTGGAATA 59.900 41.667 0.00 0.00 0.00 1.75
423 424 3.118519 GGATTTTCATGGCTTGCTGGAAT 60.119 43.478 0.00 0.00 0.00 3.01
424 425 2.234414 GGATTTTCATGGCTTGCTGGAA 59.766 45.455 0.00 0.00 0.00 3.53
425 426 1.826720 GGATTTTCATGGCTTGCTGGA 59.173 47.619 0.00 0.00 0.00 3.86
426 427 1.470285 CGGATTTTCATGGCTTGCTGG 60.470 52.381 0.00 0.00 0.00 4.85
427 428 1.917273 CGGATTTTCATGGCTTGCTG 58.083 50.000 0.00 0.00 0.00 4.41
428 429 0.174162 GCGGATTTTCATGGCTTGCT 59.826 50.000 0.00 0.00 0.00 3.91
429 430 0.174162 AGCGGATTTTCATGGCTTGC 59.826 50.000 0.00 0.00 0.00 4.01
430 431 1.473677 TGAGCGGATTTTCATGGCTTG 59.526 47.619 0.00 0.00 33.40 4.01
431 432 1.474077 GTGAGCGGATTTTCATGGCTT 59.526 47.619 0.00 0.00 33.40 4.35
432 433 1.098050 GTGAGCGGATTTTCATGGCT 58.902 50.000 0.00 0.00 36.51 4.75
433 434 0.101219 GGTGAGCGGATTTTCATGGC 59.899 55.000 0.00 0.00 0.00 4.40
434 435 0.378257 CGGTGAGCGGATTTTCATGG 59.622 55.000 0.00 0.00 0.00 3.66
435 436 1.368641 TCGGTGAGCGGATTTTCATG 58.631 50.000 3.57 0.00 0.00 3.07
436 437 2.009774 CTTCGGTGAGCGGATTTTCAT 58.990 47.619 3.57 0.00 0.00 2.57
437 438 1.001520 TCTTCGGTGAGCGGATTTTCA 59.998 47.619 3.57 0.00 0.00 2.69
438 439 1.722011 TCTTCGGTGAGCGGATTTTC 58.278 50.000 3.57 0.00 0.00 2.29
439 440 2.178912 TTCTTCGGTGAGCGGATTTT 57.821 45.000 3.57 0.00 0.00 1.82
440 441 2.076863 CTTTCTTCGGTGAGCGGATTT 58.923 47.619 3.57 0.00 0.00 2.17
441 442 1.676014 CCTTTCTTCGGTGAGCGGATT 60.676 52.381 3.57 0.00 0.00 3.01
442 443 0.108138 CCTTTCTTCGGTGAGCGGAT 60.108 55.000 3.57 0.00 0.00 4.18
443 444 1.292223 CCTTTCTTCGGTGAGCGGA 59.708 57.895 3.57 0.00 0.00 5.54
444 445 2.391389 GCCTTTCTTCGGTGAGCGG 61.391 63.158 3.57 0.00 0.00 5.52
445 446 0.951040 AAGCCTTTCTTCGGTGAGCG 60.951 55.000 0.00 0.00 0.00 5.03
446 447 0.519077 CAAGCCTTTCTTCGGTGAGC 59.481 55.000 0.00 0.00 31.27 4.26
452 453 1.338020 ACTTTGGCAAGCCTTTCTTCG 59.662 47.619 12.96 0.00 36.94 3.79
462 463 3.668447 TGCTAGAAGAGACTTTGGCAAG 58.332 45.455 0.00 0.00 35.92 4.01
465 466 2.006169 GCTGCTAGAAGAGACTTTGGC 58.994 52.381 0.27 0.00 0.00 4.52
487 488 5.008613 GTGTGGACTAGAGAAAATTTGTGCA 59.991 40.000 0.00 0.00 0.00 4.57
497 498 3.961480 CACATGGTGTGGACTAGAGAA 57.039 47.619 0.00 0.00 44.27 2.87
552 557 7.650903 CGATGATAGTTGATGAACAGATCAGAA 59.349 37.037 14.63 0.00 42.53 3.02
561 566 7.643528 TCTATTGCGATGATAGTTGATGAAC 57.356 36.000 0.00 0.00 0.00 3.18
593 598 6.763610 ACTTTCACTTACAGAGGAACTTTCTG 59.236 38.462 0.98 0.98 45.89 3.02
594 599 6.890293 ACTTTCACTTACAGAGGAACTTTCT 58.110 36.000 0.00 0.00 41.55 2.52
595 600 7.254829 GGAACTTTCACTTACAGAGGAACTTTC 60.255 40.741 0.00 0.00 41.55 2.62
596 601 6.542735 GGAACTTTCACTTACAGAGGAACTTT 59.457 38.462 0.00 0.00 41.55 2.66
597 602 6.056236 GGAACTTTCACTTACAGAGGAACTT 58.944 40.000 0.00 0.00 41.55 2.66
598 603 5.367060 AGGAACTTTCACTTACAGAGGAACT 59.633 40.000 0.00 0.00 36.38 3.01
599 604 5.612351 AGGAACTTTCACTTACAGAGGAAC 58.388 41.667 0.00 0.00 27.25 3.62
600 605 5.602978 AGAGGAACTTTCACTTACAGAGGAA 59.397 40.000 0.00 0.00 41.55 3.36
601 606 5.011125 CAGAGGAACTTTCACTTACAGAGGA 59.989 44.000 0.00 0.00 41.55 3.71
602 607 5.221541 ACAGAGGAACTTTCACTTACAGAGG 60.222 44.000 0.00 0.00 41.55 3.69
603 608 5.694006 CACAGAGGAACTTTCACTTACAGAG 59.306 44.000 0.00 0.00 41.55 3.35
604 609 5.453339 CCACAGAGGAACTTTCACTTACAGA 60.453 44.000 0.00 0.00 41.55 3.41
605 610 4.752101 CCACAGAGGAACTTTCACTTACAG 59.248 45.833 0.00 0.00 41.55 2.74
606 611 4.703897 CCACAGAGGAACTTTCACTTACA 58.296 43.478 0.00 0.00 41.55 2.41
607 612 3.498777 GCCACAGAGGAACTTTCACTTAC 59.501 47.826 0.00 0.00 41.55 2.34
608 613 3.391296 AGCCACAGAGGAACTTTCACTTA 59.609 43.478 0.00 0.00 41.55 2.24
609 614 2.173569 AGCCACAGAGGAACTTTCACTT 59.826 45.455 0.00 0.00 41.55 3.16
610 615 1.771255 AGCCACAGAGGAACTTTCACT 59.229 47.619 0.00 0.00 41.55 3.41
611 616 2.147150 GAGCCACAGAGGAACTTTCAC 58.853 52.381 0.00 0.00 41.55 3.18
612 617 1.270305 CGAGCCACAGAGGAACTTTCA 60.270 52.381 0.00 0.00 41.55 2.69
613 618 1.000955 TCGAGCCACAGAGGAACTTTC 59.999 52.381 0.00 0.00 41.55 2.62
614 619 1.048601 TCGAGCCACAGAGGAACTTT 58.951 50.000 0.00 0.00 41.55 2.66
615 620 1.205893 GATCGAGCCACAGAGGAACTT 59.794 52.381 0.00 0.00 41.55 2.66
617 622 0.532573 TGATCGAGCCACAGAGGAAC 59.467 55.000 0.00 0.00 41.22 3.62
618 623 0.820226 CTGATCGAGCCACAGAGGAA 59.180 55.000 0.00 0.00 41.22 3.36
619 624 0.034089 TCTGATCGAGCCACAGAGGA 60.034 55.000 0.00 0.00 41.22 3.71
620 625 0.820226 TTCTGATCGAGCCACAGAGG 59.180 55.000 0.00 0.00 40.82 3.69
621 626 2.662006 TTTCTGATCGAGCCACAGAG 57.338 50.000 0.00 0.00 40.82 3.35
622 627 3.616956 AATTTCTGATCGAGCCACAGA 57.383 42.857 0.00 4.36 38.61 3.41
623 628 3.243877 CGTAATTTCTGATCGAGCCACAG 59.756 47.826 0.00 1.90 0.00 3.66
624 629 3.186909 CGTAATTTCTGATCGAGCCACA 58.813 45.455 0.00 0.00 0.00 4.17
625 630 2.540101 CCGTAATTTCTGATCGAGCCAC 59.460 50.000 0.00 0.00 0.00 5.01
626 631 2.429250 TCCGTAATTTCTGATCGAGCCA 59.571 45.455 0.00 0.00 0.00 4.75
627 632 2.795470 GTCCGTAATTTCTGATCGAGCC 59.205 50.000 0.00 0.00 0.00 4.70
628 633 2.795470 GGTCCGTAATTTCTGATCGAGC 59.205 50.000 0.00 0.00 0.00 5.03
629 634 4.308899 AGGTCCGTAATTTCTGATCGAG 57.691 45.455 0.00 0.00 0.00 4.04
630 635 4.441079 GGAAGGTCCGTAATTTCTGATCGA 60.441 45.833 0.00 0.00 0.00 3.59
631 636 3.802685 GGAAGGTCCGTAATTTCTGATCG 59.197 47.826 0.00 0.00 0.00 3.69
632 637 4.127907 GGGAAGGTCCGTAATTTCTGATC 58.872 47.826 0.00 0.00 37.43 2.92
633 638 3.521937 TGGGAAGGTCCGTAATTTCTGAT 59.478 43.478 0.00 0.00 37.43 2.90
634 639 2.907696 TGGGAAGGTCCGTAATTTCTGA 59.092 45.455 0.00 0.00 37.43 3.27
635 640 3.055385 TCTGGGAAGGTCCGTAATTTCTG 60.055 47.826 0.00 0.00 37.43 3.02
636 641 3.055312 GTCTGGGAAGGTCCGTAATTTCT 60.055 47.826 0.00 0.00 37.43 2.52
637 642 3.268330 GTCTGGGAAGGTCCGTAATTTC 58.732 50.000 0.00 0.00 37.43 2.17
638 643 2.026542 GGTCTGGGAAGGTCCGTAATTT 60.027 50.000 0.00 0.00 37.43 1.82
639 644 1.558294 GGTCTGGGAAGGTCCGTAATT 59.442 52.381 0.00 0.00 37.43 1.40
640 645 1.201424 GGTCTGGGAAGGTCCGTAAT 58.799 55.000 0.00 0.00 37.43 1.89
669 674 6.158598 TGTGTGTTAGGTTAAATCGTAGTCC 58.841 40.000 0.00 0.00 0.00 3.85
676 681 4.393680 TGGCGATGTGTGTTAGGTTAAATC 59.606 41.667 0.00 0.00 0.00 2.17
706 711 4.383552 CCCCTCTTCTCATTCCTGTAGTTG 60.384 50.000 0.00 0.00 0.00 3.16
707 712 3.777522 CCCCTCTTCTCATTCCTGTAGTT 59.222 47.826 0.00 0.00 0.00 2.24
708 713 3.379452 CCCCTCTTCTCATTCCTGTAGT 58.621 50.000 0.00 0.00 0.00 2.73
709 714 2.103941 GCCCCTCTTCTCATTCCTGTAG 59.896 54.545 0.00 0.00 0.00 2.74
710 715 2.119495 GCCCCTCTTCTCATTCCTGTA 58.881 52.381 0.00 0.00 0.00 2.74
711 716 0.915364 GCCCCTCTTCTCATTCCTGT 59.085 55.000 0.00 0.00 0.00 4.00
712 717 0.182299 GGCCCCTCTTCTCATTCCTG 59.818 60.000 0.00 0.00 0.00 3.86
713 718 0.045469 AGGCCCCTCTTCTCATTCCT 59.955 55.000 0.00 0.00 0.00 3.36
729 734 3.381045 GTTTTGCAAGTAAAGGTCAGGC 58.619 45.455 0.00 0.00 0.00 4.85
843 850 0.684479 TCGAGGTGGAGAGGTGATGG 60.684 60.000 0.00 0.00 0.00 3.51
1022 1034 0.912487 ATAGGGTGGTTTGGAGGCGA 60.912 55.000 0.00 0.00 0.00 5.54
1141 1158 3.486875 GCAATTAAATAGCCGACGTTGCT 60.487 43.478 16.33 16.33 42.81 3.91
1240 1257 5.240183 ACCAAATATAGCTCATGTCATGCAC 59.760 40.000 8.03 2.63 0.00 4.57
1283 1300 1.005037 CTAACTCCGCACAGCACCA 60.005 57.895 0.00 0.00 0.00 4.17
1288 1305 1.728971 CTTCAAGCTAACTCCGCACAG 59.271 52.381 0.00 0.00 0.00 3.66
1683 1709 2.358737 CGCTTTCCCTTGCCGACT 60.359 61.111 0.00 0.00 0.00 4.18
1771 1797 1.192090 GACGGTAGTAGCTCGTCGATC 59.808 57.143 8.85 0.00 42.60 3.69
1776 1802 0.540923 AGAGGACGGTAGTAGCTCGT 59.459 55.000 0.00 0.00 39.99 4.18
1777 1803 1.666054 AAGAGGACGGTAGTAGCTCG 58.334 55.000 0.00 0.00 0.00 5.03
1778 1804 2.031930 CGAAAGAGGACGGTAGTAGCTC 59.968 54.545 0.00 0.00 0.00 4.09
1779 1805 2.015587 CGAAAGAGGACGGTAGTAGCT 58.984 52.381 0.00 0.00 0.00 3.32
1780 1806 1.742268 ACGAAAGAGGACGGTAGTAGC 59.258 52.381 0.00 0.00 0.00 3.58
1781 1807 4.155644 AGAAACGAAAGAGGACGGTAGTAG 59.844 45.833 0.00 0.00 0.00 2.57
1782 1808 4.074970 AGAAACGAAAGAGGACGGTAGTA 58.925 43.478 0.00 0.00 0.00 1.82
1783 1809 2.889678 AGAAACGAAAGAGGACGGTAGT 59.110 45.455 0.00 0.00 0.00 2.73
1784 1810 3.190953 AGAGAAACGAAAGAGGACGGTAG 59.809 47.826 0.00 0.00 0.00 3.18
1785 1811 3.152341 AGAGAAACGAAAGAGGACGGTA 58.848 45.455 0.00 0.00 0.00 4.02
1806 1832 2.241190 ACGCACGCACACGATTGAA 61.241 52.632 0.00 0.00 43.93 2.69
2058 2091 3.379445 GGACGGGGCGAGACAAGA 61.379 66.667 0.00 0.00 0.00 3.02
2384 2436 3.209410 GCCCGAGTCTTCATTCATTCAT 58.791 45.455 0.00 0.00 0.00 2.57
2385 2437 2.027285 TGCCCGAGTCTTCATTCATTCA 60.027 45.455 0.00 0.00 0.00 2.57
2386 2438 2.611292 CTGCCCGAGTCTTCATTCATTC 59.389 50.000 0.00 0.00 0.00 2.67
2387 2439 2.026822 ACTGCCCGAGTCTTCATTCATT 60.027 45.455 0.00 0.00 0.00 2.57
2440 2492 3.572632 ATTAGTGCATGCATGGTCTCT 57.427 42.857 25.64 17.00 0.00 3.10
2577 2631 1.633945 GAATGACCCTAACCACCCAGT 59.366 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.