Multiple sequence alignment - TraesCS1B01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G283500 chr1B 100.000 3936 0 0 1 3936 492332659 492336594 0.000000e+00 7269.0
1 TraesCS1B01G283500 chr1B 96.970 33 1 0 1732 1764 623911759 623911727 5.490000e-04 56.5
2 TraesCS1B01G283500 chr1B 100.000 29 0 0 1732 1760 649370571 649370543 2.000000e-03 54.7
3 TraesCS1B01G283500 chr1D 86.916 1735 105 57 1 1688 368317221 368318880 0.000000e+00 1834.0
4 TraesCS1B01G283500 chr1D 94.410 1127 60 1 2058 3184 368318912 368320035 0.000000e+00 1729.0
5 TraesCS1B01G283500 chr1D 88.976 635 66 4 3292 3924 21879384 21878752 0.000000e+00 782.0
6 TraesCS1B01G283500 chr1D 88.819 635 67 4 3292 3924 346392752 346392120 0.000000e+00 776.0
7 TraesCS1B01G283500 chr1A 93.778 1125 67 1 2058 3182 467256685 467257806 0.000000e+00 1687.0
8 TraesCS1B01G283500 chr1A 88.846 1291 56 32 474 1736 467255458 467256688 0.000000e+00 1506.0
9 TraesCS1B01G283500 chr1A 87.085 271 25 7 1 268 467226744 467227007 8.270000e-77 298.0
10 TraesCS1B01G283500 chr1A 88.235 187 22 0 265 451 467235707 467235893 1.420000e-54 224.0
11 TraesCS1B01G283500 chr5D 88.994 636 67 3 3291 3924 212256641 212256007 0.000000e+00 784.0
12 TraesCS1B01G283500 chr3A 88.836 636 65 6 3288 3922 688985532 688984902 0.000000e+00 776.0
13 TraesCS1B01G283500 chr3A 88.697 637 67 4 3292 3924 171213815 171213180 0.000000e+00 773.0
14 TraesCS1B01G283500 chr3A 88.486 634 72 1 3292 3924 505233588 505234221 0.000000e+00 765.0
15 TraesCS1B01G283500 chr7D 88.661 635 68 4 3292 3923 249618299 249618932 0.000000e+00 771.0
16 TraesCS1B01G283500 chr4A 88.644 634 70 2 3292 3924 618285833 618285201 0.000000e+00 771.0
17 TraesCS1B01G283500 chr3B 88.558 638 69 4 3288 3924 257779766 257779132 0.000000e+00 771.0
18 TraesCS1B01G283500 chr3B 93.478 46 3 0 2024 2069 816619239 816619284 7.060000e-08 69.4
19 TraesCS1B01G283500 chr4B 80.796 854 134 19 2091 2932 642457835 642457000 3.320000e-180 641.0
20 TraesCS1B01G283500 chr4B 98.182 330 5 1 1732 2061 481528782 481528454 3.410000e-160 575.0
21 TraesCS1B01G283500 chr4B 82.483 451 52 15 837 1263 642458903 642458456 1.730000e-98 370.0
22 TraesCS1B01G283500 chr4B 83.750 240 29 8 1008 1239 642463184 642462947 6.620000e-53 219.0
23 TraesCS1B01G283500 chr4B 80.620 258 33 12 1008 1257 642537199 642536951 2.420000e-42 183.0
24 TraesCS1B01G283500 chr4D 80.399 852 141 11 2091 2932 499503747 499502912 3.340000e-175 625.0
25 TraesCS1B01G283500 chr4D 82.379 454 52 14 837 1263 499504762 499504310 1.730000e-98 370.0
26 TraesCS1B01G283500 chr4D 81.667 240 34 8 1008 1239 499547312 499547075 1.440000e-44 191.0
27 TraesCS1B01G283500 chr7B 99.403 335 0 2 1728 2061 32102280 32102613 1.210000e-169 606.0
28 TraesCS1B01G283500 chr5A 79.508 854 146 15 2091 2932 680503836 680503000 7.330000e-162 580.0
29 TraesCS1B01G283500 chr5A 76.654 801 133 31 837 1591 680504893 680504101 1.030000e-105 394.0
30 TraesCS1B01G283500 chr5A 81.377 247 36 6 1001 1239 627014975 627015219 4.010000e-45 193.0
31 TraesCS1B01G283500 chr5A 78.292 281 44 12 993 1260 680692382 680692106 8.750000e-37 165.0
32 TraesCS1B01G283500 chr5A 79.752 242 36 9 1009 1239 680741688 680741927 3.150000e-36 163.0
33 TraesCS1B01G283500 chr5A 88.889 63 7 0 1528 1590 680726066 680726128 1.170000e-10 78.7
34 TraesCS1B01G283500 chrUn 95.455 330 14 1 1735 2064 49985374 49985046 3.480000e-145 525.0
35 TraesCS1B01G283500 chr7A 89.369 301 23 5 1762 2062 689388399 689388690 1.730000e-98 370.0
36 TraesCS1B01G283500 chr7A 93.684 190 8 2 1752 1941 730402553 730402368 8.330000e-72 281.0
37 TraesCS1B01G283500 chr7A 81.081 74 10 3 1998 2069 94931251 94931180 5.490000e-04 56.5
38 TraesCS1B01G283500 chr5B 86.405 331 42 2 1731 2061 96189756 96190083 3.740000e-95 359.0
39 TraesCS1B01G283500 chr5B 81.818 121 13 5 218 338 581217630 581217519 4.190000e-15 93.5
40 TraesCS1B01G283500 chr5B 94.872 39 1 1 1724 1762 334739018 334739055 4.250000e-05 60.2
41 TraesCS1B01G283500 chr6B 92.411 224 8 5 1838 2061 603068366 603068152 1.060000e-80 311.0
42 TraesCS1B01G283500 chr6B 92.857 112 6 2 1725 1835 603081366 603081256 1.130000e-35 161.0
43 TraesCS1B01G283500 chr6D 91.736 121 9 1 1856 1975 464974485 464974365 2.430000e-37 167.0
44 TraesCS1B01G283500 chr6D 82.051 78 9 4 1998 2072 25850526 25850451 1.180000e-05 62.1
45 TraesCS1B01G283500 chr2B 100.000 28 0 0 1732 1759 678165514 678165541 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G283500 chr1B 492332659 492336594 3935 False 7269.0 7269 100.0000 1 3936 1 chr1B.!!$F1 3935
1 TraesCS1B01G283500 chr1D 368317221 368320035 2814 False 1781.5 1834 90.6630 1 3184 2 chr1D.!!$F1 3183
2 TraesCS1B01G283500 chr1D 21878752 21879384 632 True 782.0 782 88.9760 3292 3924 1 chr1D.!!$R1 632
3 TraesCS1B01G283500 chr1D 346392120 346392752 632 True 776.0 776 88.8190 3292 3924 1 chr1D.!!$R2 632
4 TraesCS1B01G283500 chr1A 467255458 467257806 2348 False 1596.5 1687 91.3120 474 3182 2 chr1A.!!$F3 2708
5 TraesCS1B01G283500 chr5D 212256007 212256641 634 True 784.0 784 88.9940 3291 3924 1 chr5D.!!$R1 633
6 TraesCS1B01G283500 chr3A 688984902 688985532 630 True 776.0 776 88.8360 3288 3922 1 chr3A.!!$R2 634
7 TraesCS1B01G283500 chr3A 171213180 171213815 635 True 773.0 773 88.6970 3292 3924 1 chr3A.!!$R1 632
8 TraesCS1B01G283500 chr3A 505233588 505234221 633 False 765.0 765 88.4860 3292 3924 1 chr3A.!!$F1 632
9 TraesCS1B01G283500 chr7D 249618299 249618932 633 False 771.0 771 88.6610 3292 3923 1 chr7D.!!$F1 631
10 TraesCS1B01G283500 chr4A 618285201 618285833 632 True 771.0 771 88.6440 3292 3924 1 chr4A.!!$R1 632
11 TraesCS1B01G283500 chr3B 257779132 257779766 634 True 771.0 771 88.5580 3288 3924 1 chr3B.!!$R1 636
12 TraesCS1B01G283500 chr4B 642457000 642458903 1903 True 505.5 641 81.6395 837 2932 2 chr4B.!!$R4 2095
13 TraesCS1B01G283500 chr4D 499502912 499504762 1850 True 497.5 625 81.3890 837 2932 2 chr4D.!!$R2 2095
14 TraesCS1B01G283500 chr5A 680503000 680504893 1893 True 487.0 580 78.0810 837 2932 2 chr5A.!!$R2 2095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 872 0.108804 ACGAACCTCACGGCATGTAG 60.109 55.0 0.0 0.0 34.93 2.74 F
1832 2100 0.108520 TACATGCCGTCCCTCGAAAC 60.109 55.0 0.0 0.0 42.86 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 2127 0.034767 CAGGCATGGGAAAGAGAGCA 60.035 55.0 0.00 0.00 0.00 4.26 R
3335 3614 0.245539 ACAAAGATGGCTGCATGCAC 59.754 50.0 18.46 13.69 45.15 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 57 9.683870 AATAAAGGTATTGTTTGTCCGGTATAA 57.316 29.630 0.00 0.00 0.00 0.98
52 58 7.999450 AAAGGTATTGTTTGTCCGGTATAAA 57.001 32.000 0.00 0.00 0.00 1.40
124 130 1.544759 CGCCCAGTAACCAGAACCTTT 60.545 52.381 0.00 0.00 0.00 3.11
144 150 5.221185 CCTTTGGCCATCTATGAAGAATGTG 60.221 44.000 6.09 0.00 34.73 3.21
214 220 1.303643 GGGCCAAGAGGGAACACAG 60.304 63.158 4.39 0.00 40.01 3.66
215 221 1.456287 GGCCAAGAGGGAACACAGT 59.544 57.895 0.00 0.00 40.01 3.55
216 222 0.890996 GGCCAAGAGGGAACACAGTG 60.891 60.000 0.00 0.00 40.01 3.66
219 225 2.654863 CCAAGAGGGAACACAGTGTTT 58.345 47.619 20.07 4.54 41.28 2.83
220 226 2.358898 CCAAGAGGGAACACAGTGTTTG 59.641 50.000 20.07 12.55 41.28 2.93
222 228 3.366052 AGAGGGAACACAGTGTTTGTT 57.634 42.857 20.07 8.55 41.28 2.83
223 229 3.697166 AGAGGGAACACAGTGTTTGTTT 58.303 40.909 20.07 6.85 41.28 2.83
225 231 5.258051 AGAGGGAACACAGTGTTTGTTTTA 58.742 37.500 20.07 0.00 41.28 1.52
226 232 5.124936 AGAGGGAACACAGTGTTTGTTTTAC 59.875 40.000 20.07 5.52 41.28 2.01
227 233 4.099824 GGGAACACAGTGTTTGTTTTACG 58.900 43.478 20.07 0.00 41.28 3.18
232 241 1.331138 CAGTGTTTGTTTTACGCGGGA 59.669 47.619 12.47 0.00 0.00 5.14
245 254 2.730382 ACGCGGGATTAAAAGGGATTT 58.270 42.857 12.47 0.00 34.92 2.17
268 277 2.262423 AGCTCAAGGTGGAGAAACAC 57.738 50.000 0.00 0.00 40.60 3.32
286 295 2.289694 ACACCTTCCATACAGAGTGCAC 60.290 50.000 9.40 9.40 0.00 4.57
287 296 1.279271 ACCTTCCATACAGAGTGCACC 59.721 52.381 14.63 5.12 0.00 5.01
298 307 3.193263 CAGAGTGCACCTACATTAGCAG 58.807 50.000 14.63 0.00 37.72 4.24
304 313 0.839946 ACCTACATTAGCAGGGCCTG 59.160 55.000 29.44 29.44 36.15 4.85
305 314 0.109342 CCTACATTAGCAGGGCCTGG 59.891 60.000 33.43 19.21 31.21 4.45
307 316 0.546122 TACATTAGCAGGGCCTGGTG 59.454 55.000 40.63 28.74 42.42 4.17
309 318 2.615465 ATTAGCAGGGCCTGGTGCA 61.615 57.895 40.63 29.23 42.42 4.57
341 350 2.251893 CGTTCTTGCTTCTACTCGACC 58.748 52.381 0.00 0.00 0.00 4.79
365 374 5.982516 CGAAAGAAGCTAAGCTATGACTGAT 59.017 40.000 0.00 0.00 38.25 2.90
368 377 6.477053 AGAAGCTAAGCTATGACTGATGAA 57.523 37.500 0.00 0.00 38.25 2.57
452 462 3.622612 TGATCGCTGACAATGTAACCATG 59.377 43.478 0.00 0.00 0.00 3.66
453 463 3.052455 TCGCTGACAATGTAACCATGT 57.948 42.857 0.00 0.00 0.00 3.21
454 464 2.741517 TCGCTGACAATGTAACCATGTG 59.258 45.455 0.00 0.00 0.00 3.21
455 465 2.741517 CGCTGACAATGTAACCATGTGA 59.258 45.455 0.00 0.00 0.00 3.58
456 466 3.374988 CGCTGACAATGTAACCATGTGAT 59.625 43.478 0.00 0.00 0.00 3.06
457 467 4.494690 CGCTGACAATGTAACCATGTGATC 60.495 45.833 0.00 0.00 0.00 2.92
458 468 4.201950 GCTGACAATGTAACCATGTGATCC 60.202 45.833 0.00 0.00 0.00 3.36
459 469 4.269183 TGACAATGTAACCATGTGATCCC 58.731 43.478 0.00 0.00 0.00 3.85
460 470 3.278574 ACAATGTAACCATGTGATCCCG 58.721 45.455 0.00 0.00 0.00 5.14
461 471 1.967319 ATGTAACCATGTGATCCCGC 58.033 50.000 0.00 0.00 0.00 6.13
462 472 0.615850 TGTAACCATGTGATCCCGCA 59.384 50.000 0.00 0.00 37.19 5.69
463 473 1.003696 TGTAACCATGTGATCCCGCAA 59.996 47.619 0.00 0.00 36.26 4.85
464 474 2.088423 GTAACCATGTGATCCCGCAAA 58.912 47.619 0.00 0.00 36.26 3.68
465 475 1.626686 AACCATGTGATCCCGCAAAA 58.373 45.000 0.00 0.00 36.26 2.44
466 476 1.626686 ACCATGTGATCCCGCAAAAA 58.373 45.000 0.00 0.00 36.26 1.94
598 634 4.917998 GTCATTTTTCTCCTCTTTTTCGGC 59.082 41.667 0.00 0.00 0.00 5.54
625 661 0.917333 TTGAAACCCCGGGCCTCTAT 60.917 55.000 17.73 0.00 0.00 1.98
631 667 1.358152 CCCCGGGCCTCTATATCAAA 58.642 55.000 17.73 0.00 0.00 2.69
653 689 1.667830 CGACGGTTGCCATCTGTGT 60.668 57.895 0.00 0.00 0.00 3.72
659 695 2.671396 CGGTTGCCATCTGTGTAACTAC 59.329 50.000 0.00 0.00 38.04 2.73
813 851 8.644374 AGTAAAGCATATAGAGGAACTAGAGG 57.356 38.462 0.00 0.00 41.55 3.69
814 852 8.449625 AGTAAAGCATATAGAGGAACTAGAGGA 58.550 37.037 0.00 0.00 41.55 3.71
817 855 5.708230 AGCATATAGAGGAACTAGAGGAACG 59.292 44.000 0.00 0.00 41.55 3.95
818 856 5.706369 GCATATAGAGGAACTAGAGGAACGA 59.294 44.000 0.00 0.00 41.55 3.85
819 857 6.207025 GCATATAGAGGAACTAGAGGAACGAA 59.793 42.308 0.00 0.00 41.55 3.85
820 858 7.586747 CATATAGAGGAACTAGAGGAACGAAC 58.413 42.308 0.00 0.00 41.55 3.95
821 859 3.090790 AGAGGAACTAGAGGAACGAACC 58.909 50.000 0.00 0.00 41.55 3.62
822 860 3.090790 GAGGAACTAGAGGAACGAACCT 58.909 50.000 0.00 5.01 41.55 3.50
828 866 2.342648 AGGAACGAACCTCACGGC 59.657 61.111 0.00 0.00 34.98 5.68
829 867 2.029964 GGAACGAACCTCACGGCA 59.970 61.111 0.00 0.00 34.93 5.69
830 868 1.375523 GGAACGAACCTCACGGCAT 60.376 57.895 0.00 0.00 34.93 4.40
831 869 1.635663 GGAACGAACCTCACGGCATG 61.636 60.000 0.00 0.00 34.93 4.06
832 870 0.949105 GAACGAACCTCACGGCATGT 60.949 55.000 0.00 0.00 34.93 3.21
833 871 0.319083 AACGAACCTCACGGCATGTA 59.681 50.000 0.00 0.00 34.93 2.29
834 872 0.108804 ACGAACCTCACGGCATGTAG 60.109 55.000 0.00 0.00 34.93 2.74
835 873 0.806102 CGAACCTCACGGCATGTAGG 60.806 60.000 0.00 0.00 33.90 3.18
1113 1187 1.511305 CTTCCTCACGCTTCCGCTA 59.489 57.895 0.00 0.00 38.22 4.26
1136 1210 1.079819 CGATCCAGTTCTGCGTGGT 60.080 57.895 0.00 0.00 35.14 4.16
1167 1241 0.908198 GATGCCTCTCCAACCTCTGT 59.092 55.000 0.00 0.00 0.00 3.41
1297 1378 3.002862 CGTATCTTCTCTTGGGAGACGAG 59.997 52.174 3.78 0.17 45.59 4.18
1298 1379 1.178276 TCTTCTCTTGGGAGACGAGC 58.822 55.000 0.00 0.00 46.89 5.03
1305 1386 0.179111 TTGGGAGACGAGCTAATGCG 60.179 55.000 0.00 0.00 45.42 4.73
1309 1390 1.192793 GAGACGAGCTAATGCGTGAC 58.807 55.000 2.59 0.00 45.42 3.67
1327 1434 2.812591 TGACGATCTAGTTAGCCCGATC 59.187 50.000 0.00 0.00 0.00 3.69
1333 1440 3.223435 TCTAGTTAGCCCGATCTCTTGG 58.777 50.000 0.00 0.00 0.00 3.61
1399 1519 1.207089 TCGGGCTCAGGTACAATCTTG 59.793 52.381 0.00 0.00 0.00 3.02
1400 1520 1.207089 CGGGCTCAGGTACAATCTTGA 59.793 52.381 0.00 0.00 0.00 3.02
1462 1582 0.798776 GGTGAACGGCAATCTCTGTG 59.201 55.000 0.00 0.00 0.00 3.66
1657 1789 1.239347 GTTTGAGGAGGTGGAAGTGC 58.761 55.000 0.00 0.00 0.00 4.40
1688 1956 2.427095 GGCCCAAGGTAGCACAATTTAG 59.573 50.000 0.00 0.00 0.00 1.85
1697 1965 7.944729 AGGTAGCACAATTTAGTCATCAATT 57.055 32.000 0.00 0.00 0.00 2.32
1698 1966 8.353423 AGGTAGCACAATTTAGTCATCAATTT 57.647 30.769 0.00 0.00 0.00 1.82
1699 1967 9.461312 AGGTAGCACAATTTAGTCATCAATTTA 57.539 29.630 0.00 0.00 0.00 1.40
1700 1968 9.503427 GGTAGCACAATTTAGTCATCAATTTAC 57.497 33.333 0.00 0.00 0.00 2.01
1703 1971 8.462016 AGCACAATTTAGTCATCAATTTACTCC 58.538 33.333 0.00 0.00 0.00 3.85
1728 1996 7.604164 CCAGAAGTTGAAGCATTTTCTCTACTA 59.396 37.037 0.00 0.00 0.00 1.82
1729 1997 8.655092 CAGAAGTTGAAGCATTTTCTCTACTAG 58.345 37.037 0.00 0.00 0.00 2.57
1730 1998 6.976636 AGTTGAAGCATTTTCTCTACTAGC 57.023 37.500 0.00 0.00 0.00 3.42
1731 1999 6.706295 AGTTGAAGCATTTTCTCTACTAGCT 58.294 36.000 0.00 0.00 0.00 3.32
1732 2000 7.841956 AGTTGAAGCATTTTCTCTACTAGCTA 58.158 34.615 0.00 0.00 0.00 3.32
1733 2001 7.978975 AGTTGAAGCATTTTCTCTACTAGCTAG 59.021 37.037 19.44 19.44 0.00 3.42
1734 2002 7.411486 TGAAGCATTTTCTCTACTAGCTAGT 57.589 36.000 28.50 28.50 40.24 2.57
1735 2003 8.521170 TGAAGCATTTTCTCTACTAGCTAGTA 57.479 34.615 27.73 27.73 37.73 1.82
1736 2004 8.407064 TGAAGCATTTTCTCTACTAGCTAGTAC 58.593 37.037 26.36 14.76 37.73 2.73
1737 2005 8.528044 AAGCATTTTCTCTACTAGCTAGTACT 57.472 34.615 26.36 16.51 37.73 2.73
1738 2006 9.629878 AAGCATTTTCTCTACTAGCTAGTACTA 57.370 33.333 26.36 17.17 37.73 1.82
1739 2007 9.059260 AGCATTTTCTCTACTAGCTAGTACTAC 57.941 37.037 26.36 10.51 37.73 2.73
1740 2008 8.291740 GCATTTTCTCTACTAGCTAGTACTACC 58.708 40.741 26.36 7.35 37.73 3.18
1741 2009 9.563748 CATTTTCTCTACTAGCTAGTACTACCT 57.436 37.037 26.36 6.29 37.73 3.08
1742 2010 9.783081 ATTTTCTCTACTAGCTAGTACTACCTC 57.217 37.037 26.36 0.00 37.73 3.85
1743 2011 6.916360 TCTCTACTAGCTAGTACTACCTCC 57.084 45.833 26.36 0.00 37.73 4.30
1744 2012 5.476599 TCTCTACTAGCTAGTACTACCTCCG 59.523 48.000 26.36 15.52 37.73 4.63
1745 2013 5.144100 TCTACTAGCTAGTACTACCTCCGT 58.856 45.833 26.36 4.50 37.73 4.69
1746 2014 4.335400 ACTAGCTAGTACTACCTCCGTC 57.665 50.000 24.97 0.00 34.13 4.79
1747 2015 2.636647 AGCTAGTACTACCTCCGTCC 57.363 55.000 0.00 0.00 0.00 4.79
1748 2016 1.202627 AGCTAGTACTACCTCCGTCCG 60.203 57.143 0.00 0.00 0.00 4.79
1749 2017 1.876322 CTAGTACTACCTCCGTCCGG 58.124 60.000 0.00 0.00 0.00 5.14
1750 2018 1.414181 CTAGTACTACCTCCGTCCGGA 59.586 57.143 0.00 0.00 42.90 5.14
1751 2019 0.842635 AGTACTACCTCCGTCCGGAT 59.157 55.000 7.81 0.00 44.24 4.18
1752 2020 1.213926 AGTACTACCTCCGTCCGGATT 59.786 52.381 7.81 2.22 44.24 3.01
1753 2021 2.027385 GTACTACCTCCGTCCGGATTT 58.973 52.381 7.81 1.85 44.24 2.17
1754 2022 2.442236 ACTACCTCCGTCCGGATTTA 57.558 50.000 7.81 2.95 44.24 1.40
1755 2023 2.954792 ACTACCTCCGTCCGGATTTAT 58.045 47.619 7.81 0.00 44.24 1.40
1756 2024 3.303049 ACTACCTCCGTCCGGATTTATT 58.697 45.455 7.81 0.00 44.24 1.40
1757 2025 2.614829 ACCTCCGTCCGGATTTATTG 57.385 50.000 7.81 0.00 44.24 1.90
1758 2026 1.140252 ACCTCCGTCCGGATTTATTGG 59.860 52.381 7.81 8.49 44.24 3.16
1759 2027 1.542547 CCTCCGTCCGGATTTATTGGG 60.543 57.143 7.81 1.25 44.24 4.12
1760 2028 0.179040 TCCGTCCGGATTTATTGGGC 60.179 55.000 7.81 0.00 39.76 5.36
1761 2029 1.170290 CCGTCCGGATTTATTGGGCC 61.170 60.000 7.81 0.00 37.50 5.80
1762 2030 0.179029 CGTCCGGATTTATTGGGCCT 60.179 55.000 7.81 0.00 0.00 5.19
1763 2031 1.605753 GTCCGGATTTATTGGGCCTC 58.394 55.000 7.81 0.00 0.00 4.70
1764 2032 1.143073 GTCCGGATTTATTGGGCCTCT 59.857 52.381 7.81 0.00 0.00 3.69
1765 2033 2.370849 GTCCGGATTTATTGGGCCTCTA 59.629 50.000 7.81 0.00 0.00 2.43
1766 2034 3.050089 TCCGGATTTATTGGGCCTCTAA 58.950 45.455 0.00 0.00 0.00 2.10
1767 2035 3.072476 TCCGGATTTATTGGGCCTCTAAG 59.928 47.826 0.00 0.00 0.00 2.18
1768 2036 2.814336 CGGATTTATTGGGCCTCTAAGC 59.186 50.000 4.53 0.00 0.00 3.09
1777 2045 1.805910 GCCTCTAAGCCAAAGCAGC 59.194 57.895 0.00 0.00 43.56 5.25
1778 2046 1.661498 GCCTCTAAGCCAAAGCAGCC 61.661 60.000 0.00 0.00 43.56 4.85
1779 2047 0.322816 CCTCTAAGCCAAAGCAGCCA 60.323 55.000 0.00 0.00 43.56 4.75
1780 2048 1.538047 CTCTAAGCCAAAGCAGCCAA 58.462 50.000 0.00 0.00 43.56 4.52
1781 2049 1.888512 CTCTAAGCCAAAGCAGCCAAA 59.111 47.619 0.00 0.00 43.56 3.28
1782 2050 1.613437 TCTAAGCCAAAGCAGCCAAAC 59.387 47.619 0.00 0.00 43.56 2.93
1783 2051 0.678950 TAAGCCAAAGCAGCCAAACC 59.321 50.000 0.00 0.00 43.56 3.27
1784 2052 1.336632 AAGCCAAAGCAGCCAAACCA 61.337 50.000 0.00 0.00 43.56 3.67
1785 2053 1.145819 GCCAAAGCAGCCAAACCAA 59.854 52.632 0.00 0.00 39.53 3.67
1786 2054 0.881600 GCCAAAGCAGCCAAACCAAG 60.882 55.000 0.00 0.00 39.53 3.61
1787 2055 0.752054 CCAAAGCAGCCAAACCAAGA 59.248 50.000 0.00 0.00 0.00 3.02
1788 2056 1.269936 CCAAAGCAGCCAAACCAAGAG 60.270 52.381 0.00 0.00 0.00 2.85
1789 2057 1.682854 CAAAGCAGCCAAACCAAGAGA 59.317 47.619 0.00 0.00 0.00 3.10
1790 2058 1.322442 AAGCAGCCAAACCAAGAGAC 58.678 50.000 0.00 0.00 0.00 3.36
1791 2059 0.183492 AGCAGCCAAACCAAGAGACA 59.817 50.000 0.00 0.00 0.00 3.41
1792 2060 1.202976 AGCAGCCAAACCAAGAGACAT 60.203 47.619 0.00 0.00 0.00 3.06
1793 2061 1.615392 GCAGCCAAACCAAGAGACATT 59.385 47.619 0.00 0.00 0.00 2.71
1794 2062 2.036346 GCAGCCAAACCAAGAGACATTT 59.964 45.455 0.00 0.00 0.00 2.32
1795 2063 3.645884 CAGCCAAACCAAGAGACATTTG 58.354 45.455 0.00 0.00 32.89 2.32
1796 2064 3.318839 CAGCCAAACCAAGAGACATTTGA 59.681 43.478 0.00 0.00 34.62 2.69
1797 2065 4.021719 CAGCCAAACCAAGAGACATTTGAT 60.022 41.667 0.00 0.00 34.62 2.57
1798 2066 4.590222 AGCCAAACCAAGAGACATTTGATT 59.410 37.500 0.00 0.00 34.62 2.57
1799 2067 5.070847 AGCCAAACCAAGAGACATTTGATTT 59.929 36.000 0.00 0.00 34.62 2.17
1800 2068 6.267471 AGCCAAACCAAGAGACATTTGATTTA 59.733 34.615 0.00 0.00 34.62 1.40
1801 2069 7.038799 AGCCAAACCAAGAGACATTTGATTTAT 60.039 33.333 0.00 0.00 34.62 1.40
1802 2070 7.603784 GCCAAACCAAGAGACATTTGATTTATT 59.396 33.333 0.00 0.00 34.62 1.40
1803 2071 9.492973 CCAAACCAAGAGACATTTGATTTATTT 57.507 29.630 0.00 0.00 34.62 1.40
1805 2073 8.970691 AACCAAGAGACATTTGATTTATTTCG 57.029 30.769 0.00 0.00 0.00 3.46
1806 2074 7.029563 ACCAAGAGACATTTGATTTATTTCGC 58.970 34.615 0.00 0.00 0.00 4.70
1807 2075 7.028962 CCAAGAGACATTTGATTTATTTCGCA 58.971 34.615 0.00 0.00 0.00 5.10
1808 2076 7.219535 CCAAGAGACATTTGATTTATTTCGCAG 59.780 37.037 0.00 0.00 0.00 5.18
1809 2077 7.383102 AGAGACATTTGATTTATTTCGCAGT 57.617 32.000 0.00 0.00 0.00 4.40
1810 2078 8.492673 AGAGACATTTGATTTATTTCGCAGTA 57.507 30.769 0.00 0.00 0.00 2.74
1811 2079 8.946085 AGAGACATTTGATTTATTTCGCAGTAA 58.054 29.630 0.00 0.00 0.00 2.24
1812 2080 8.895932 AGACATTTGATTTATTTCGCAGTAAC 57.104 30.769 0.00 0.00 0.00 2.50
1813 2081 8.730680 AGACATTTGATTTATTTCGCAGTAACT 58.269 29.630 0.00 0.00 0.00 2.24
1814 2082 9.982291 GACATTTGATTTATTTCGCAGTAACTA 57.018 29.630 0.00 0.00 0.00 2.24
1815 2083 9.769093 ACATTTGATTTATTTCGCAGTAACTAC 57.231 29.630 0.00 0.00 0.00 2.73
1816 2084 9.767684 CATTTGATTTATTTCGCAGTAACTACA 57.232 29.630 0.00 0.00 0.00 2.74
1818 2086 9.767684 TTTGATTTATTTCGCAGTAACTACATG 57.232 29.630 0.00 0.00 0.00 3.21
1819 2087 7.406553 TGATTTATTTCGCAGTAACTACATGC 58.593 34.615 0.00 0.00 36.60 4.06
1820 2088 5.728351 TTATTTCGCAGTAACTACATGCC 57.272 39.130 0.00 0.00 36.60 4.40
1821 2089 1.635844 TTCGCAGTAACTACATGCCG 58.364 50.000 0.00 0.00 36.60 5.69
1822 2090 0.528924 TCGCAGTAACTACATGCCGT 59.471 50.000 0.00 0.00 36.60 5.68
1823 2091 0.921347 CGCAGTAACTACATGCCGTC 59.079 55.000 0.00 0.00 36.60 4.79
1824 2092 1.287425 GCAGTAACTACATGCCGTCC 58.713 55.000 0.00 0.00 33.81 4.79
1825 2093 1.935933 CAGTAACTACATGCCGTCCC 58.064 55.000 0.00 0.00 0.00 4.46
1826 2094 1.480954 CAGTAACTACATGCCGTCCCT 59.519 52.381 0.00 0.00 0.00 4.20
1827 2095 1.755380 AGTAACTACATGCCGTCCCTC 59.245 52.381 0.00 0.00 0.00 4.30
1828 2096 0.742505 TAACTACATGCCGTCCCTCG 59.257 55.000 0.00 0.00 39.52 4.63
1829 2097 0.968901 AACTACATGCCGTCCCTCGA 60.969 55.000 0.00 0.00 42.86 4.04
1830 2098 0.968901 ACTACATGCCGTCCCTCGAA 60.969 55.000 0.00 0.00 42.86 3.71
1831 2099 0.174845 CTACATGCCGTCCCTCGAAA 59.825 55.000 0.00 0.00 42.86 3.46
1832 2100 0.108520 TACATGCCGTCCCTCGAAAC 60.109 55.000 0.00 0.00 42.86 2.78
1833 2101 1.375396 CATGCCGTCCCTCGAAACA 60.375 57.895 0.00 0.00 42.86 2.83
1834 2102 1.375523 ATGCCGTCCCTCGAAACAC 60.376 57.895 0.00 0.00 42.86 3.32
1835 2103 3.110178 GCCGTCCCTCGAAACACG 61.110 66.667 3.36 3.36 42.86 4.49
1836 2104 2.431942 CCGTCCCTCGAAACACGG 60.432 66.667 12.71 12.71 45.38 4.94
1837 2105 3.110178 CGTCCCTCGAAACACGGC 61.110 66.667 2.55 0.00 42.86 5.68
1838 2106 3.110178 GTCCCTCGAAACACGGCG 61.110 66.667 4.80 4.80 42.82 6.46
1839 2107 3.296836 TCCCTCGAAACACGGCGA 61.297 61.111 16.62 0.00 42.82 5.54
1842 2110 2.733218 CTCGAAACACGGCGAGCA 60.733 61.111 16.62 0.00 45.97 4.26
1843 2111 2.720758 CTCGAAACACGGCGAGCAG 61.721 63.158 16.62 2.56 45.97 4.24
1855 2123 2.575993 GAGCAGCTCGGCTTCTCA 59.424 61.111 6.67 0.00 45.49 3.27
1856 2124 1.809209 GAGCAGCTCGGCTTCTCAC 60.809 63.158 6.67 0.00 45.49 3.51
1857 2125 3.184683 GCAGCTCGGCTTCTCACG 61.185 66.667 0.00 0.00 36.40 4.35
1858 2126 3.184683 CAGCTCGGCTTCTCACGC 61.185 66.667 0.00 0.00 36.40 5.34
1859 2127 3.377759 AGCTCGGCTTCTCACGCT 61.378 61.111 0.00 0.00 33.89 5.07
1860 2128 3.184683 GCTCGGCTTCTCACGCTG 61.185 66.667 0.00 0.00 35.10 5.18
1861 2129 3.184683 CTCGGCTTCTCACGCTGC 61.185 66.667 0.00 0.00 33.82 5.25
1862 2130 3.639541 CTCGGCTTCTCACGCTGCT 62.640 63.158 0.00 0.00 33.82 4.24
1863 2131 3.184683 CGGCTTCTCACGCTGCTC 61.185 66.667 0.00 0.00 0.00 4.26
1864 2132 2.264166 GGCTTCTCACGCTGCTCT 59.736 61.111 0.00 0.00 0.00 4.09
1865 2133 1.809209 GGCTTCTCACGCTGCTCTC 60.809 63.158 0.00 0.00 0.00 3.20
1866 2134 1.215117 GCTTCTCACGCTGCTCTCT 59.785 57.895 0.00 0.00 0.00 3.10
1867 2135 0.389687 GCTTCTCACGCTGCTCTCTT 60.390 55.000 0.00 0.00 0.00 2.85
1868 2136 1.938926 GCTTCTCACGCTGCTCTCTTT 60.939 52.381 0.00 0.00 0.00 2.52
1869 2137 1.991965 CTTCTCACGCTGCTCTCTTTC 59.008 52.381 0.00 0.00 0.00 2.62
1870 2138 0.244994 TCTCACGCTGCTCTCTTTCC 59.755 55.000 0.00 0.00 0.00 3.13
1871 2139 0.739112 CTCACGCTGCTCTCTTTCCC 60.739 60.000 0.00 0.00 0.00 3.97
1872 2140 1.004560 CACGCTGCTCTCTTTCCCA 60.005 57.895 0.00 0.00 0.00 4.37
1873 2141 0.392193 CACGCTGCTCTCTTTCCCAT 60.392 55.000 0.00 0.00 0.00 4.00
1874 2142 0.392193 ACGCTGCTCTCTTTCCCATG 60.392 55.000 0.00 0.00 0.00 3.66
1875 2143 1.712977 CGCTGCTCTCTTTCCCATGC 61.713 60.000 0.00 0.00 0.00 4.06
1876 2144 1.382692 GCTGCTCTCTTTCCCATGCC 61.383 60.000 0.00 0.00 0.00 4.40
1877 2145 0.255318 CTGCTCTCTTTCCCATGCCT 59.745 55.000 0.00 0.00 0.00 4.75
1878 2146 0.034767 TGCTCTCTTTCCCATGCCTG 60.035 55.000 0.00 0.00 0.00 4.85
1879 2147 1.382692 GCTCTCTTTCCCATGCCTGC 61.383 60.000 0.00 0.00 0.00 4.85
1880 2148 0.034767 CTCTCTTTCCCATGCCTGCA 60.035 55.000 0.00 0.00 0.00 4.41
1881 2149 0.627451 TCTCTTTCCCATGCCTGCAT 59.373 50.000 0.00 0.00 37.08 3.96
1888 2156 2.974717 CATGCCTGCATGCACCAA 59.025 55.556 18.46 4.99 45.71 3.67
1889 2157 1.520192 CATGCCTGCATGCACCAAT 59.480 52.632 18.46 7.36 45.71 3.16
1890 2158 0.529773 CATGCCTGCATGCACCAATC 60.530 55.000 18.46 4.70 45.71 2.67
1891 2159 0.973496 ATGCCTGCATGCACCAATCA 60.973 50.000 18.46 10.35 45.48 2.57
1892 2160 1.153706 GCCTGCATGCACCAATCAC 60.154 57.895 18.46 0.00 0.00 3.06
1893 2161 1.601419 GCCTGCATGCACCAATCACT 61.601 55.000 18.46 0.00 0.00 3.41
1894 2162 0.892755 CCTGCATGCACCAATCACTT 59.107 50.000 18.46 0.00 0.00 3.16
1895 2163 1.135199 CCTGCATGCACCAATCACTTC 60.135 52.381 18.46 0.00 0.00 3.01
1896 2164 1.816835 CTGCATGCACCAATCACTTCT 59.183 47.619 18.46 0.00 0.00 2.85
1897 2165 1.814394 TGCATGCACCAATCACTTCTC 59.186 47.619 18.46 0.00 0.00 2.87
1898 2166 1.814394 GCATGCACCAATCACTTCTCA 59.186 47.619 14.21 0.00 0.00 3.27
1899 2167 2.229543 GCATGCACCAATCACTTCTCAA 59.770 45.455 14.21 0.00 0.00 3.02
1900 2168 3.119245 GCATGCACCAATCACTTCTCAAT 60.119 43.478 14.21 0.00 0.00 2.57
1901 2169 4.669318 CATGCACCAATCACTTCTCAATC 58.331 43.478 0.00 0.00 0.00 2.67
1902 2170 3.084039 TGCACCAATCACTTCTCAATCC 58.916 45.455 0.00 0.00 0.00 3.01
1903 2171 2.424956 GCACCAATCACTTCTCAATCCC 59.575 50.000 0.00 0.00 0.00 3.85
1904 2172 3.689347 CACCAATCACTTCTCAATCCCA 58.311 45.455 0.00 0.00 0.00 4.37
1905 2173 3.693085 CACCAATCACTTCTCAATCCCAG 59.307 47.826 0.00 0.00 0.00 4.45
1906 2174 2.686915 CCAATCACTTCTCAATCCCAGC 59.313 50.000 0.00 0.00 0.00 4.85
1907 2175 3.618351 CAATCACTTCTCAATCCCAGCT 58.382 45.455 0.00 0.00 0.00 4.24
1908 2176 3.557228 ATCACTTCTCAATCCCAGCTC 57.443 47.619 0.00 0.00 0.00 4.09
1909 2177 2.259917 TCACTTCTCAATCCCAGCTCA 58.740 47.619 0.00 0.00 0.00 4.26
1910 2178 2.027745 TCACTTCTCAATCCCAGCTCAC 60.028 50.000 0.00 0.00 0.00 3.51
1911 2179 1.066573 ACTTCTCAATCCCAGCTCACG 60.067 52.381 0.00 0.00 0.00 4.35
1912 2180 0.391661 TTCTCAATCCCAGCTCACGC 60.392 55.000 0.00 0.00 0.00 5.34
1914 2182 0.392193 CTCAATCCCAGCTCACGCTT 60.392 55.000 0.00 0.00 46.47 4.68
1915 2183 0.674581 TCAATCCCAGCTCACGCTTG 60.675 55.000 0.00 0.00 46.47 4.01
1916 2184 2.042831 AATCCCAGCTCACGCTTGC 61.043 57.895 0.00 0.00 46.47 4.01
1917 2185 2.753009 AATCCCAGCTCACGCTTGCA 62.753 55.000 0.00 0.00 46.47 4.08
1918 2186 2.547640 ATCCCAGCTCACGCTTGCAT 62.548 55.000 0.00 0.00 46.47 3.96
1919 2187 2.483745 CCAGCTCACGCTTGCATG 59.516 61.111 0.00 0.00 46.47 4.06
1920 2188 2.202440 CAGCTCACGCTTGCATGC 60.202 61.111 11.82 11.82 46.47 4.06
1921 2189 2.670592 AGCTCACGCTTGCATGCA 60.671 55.556 18.46 18.46 46.47 3.96
1922 2190 2.044555 AGCTCACGCTTGCATGCAT 61.045 52.632 23.37 2.82 46.47 3.96
1923 2191 1.872234 GCTCACGCTTGCATGCATG 60.872 57.895 23.37 24.36 0.00 4.06
1955 2223 2.535574 GCAATTAGCGTGGCATTAAAGC 59.464 45.455 0.00 0.00 0.00 3.51
1956 2224 3.734902 GCAATTAGCGTGGCATTAAAGCT 60.735 43.478 2.30 0.00 41.45 3.74
1957 2225 3.971032 ATTAGCGTGGCATTAAAGCTC 57.029 42.857 2.30 0.00 39.14 4.09
1958 2226 1.663695 TAGCGTGGCATTAAAGCTCC 58.336 50.000 2.30 0.00 39.14 4.70
1959 2227 0.035056 AGCGTGGCATTAAAGCTCCT 60.035 50.000 2.30 0.00 31.94 3.69
1960 2228 0.099436 GCGTGGCATTAAAGCTCCTG 59.901 55.000 2.30 0.00 34.17 3.86
1961 2229 0.099436 CGTGGCATTAAAGCTCCTGC 59.901 55.000 2.30 0.00 40.05 4.85
1976 2244 5.376854 GCTCCTGCTTTTTAGATGTTTCA 57.623 39.130 0.00 0.00 36.03 2.69
1977 2245 5.397326 GCTCCTGCTTTTTAGATGTTTCAG 58.603 41.667 0.00 0.00 36.03 3.02
1978 2246 5.620879 GCTCCTGCTTTTTAGATGTTTCAGG 60.621 44.000 0.00 0.00 40.73 3.86
1979 2247 4.766891 TCCTGCTTTTTAGATGTTTCAGGG 59.233 41.667 0.00 0.00 40.03 4.45
1980 2248 4.524328 CCTGCTTTTTAGATGTTTCAGGGT 59.476 41.667 0.00 0.00 36.96 4.34
1981 2249 5.011023 CCTGCTTTTTAGATGTTTCAGGGTT 59.989 40.000 0.00 0.00 36.96 4.11
1982 2250 5.841810 TGCTTTTTAGATGTTTCAGGGTTG 58.158 37.500 0.00 0.00 0.00 3.77
1983 2251 5.362430 TGCTTTTTAGATGTTTCAGGGTTGT 59.638 36.000 0.00 0.00 0.00 3.32
1984 2252 6.127196 TGCTTTTTAGATGTTTCAGGGTTGTT 60.127 34.615 0.00 0.00 0.00 2.83
1985 2253 6.761242 GCTTTTTAGATGTTTCAGGGTTGTTT 59.239 34.615 0.00 0.00 0.00 2.83
1986 2254 7.279981 GCTTTTTAGATGTTTCAGGGTTGTTTT 59.720 33.333 0.00 0.00 0.00 2.43
1987 2255 8.710835 TTTTTAGATGTTTCAGGGTTGTTTTC 57.289 30.769 0.00 0.00 0.00 2.29
1988 2256 7.654022 TTTAGATGTTTCAGGGTTGTTTTCT 57.346 32.000 0.00 0.00 0.00 2.52
1989 2257 8.754991 TTTAGATGTTTCAGGGTTGTTTTCTA 57.245 30.769 0.00 0.00 0.00 2.10
1990 2258 6.884280 AGATGTTTCAGGGTTGTTTTCTAG 57.116 37.500 0.00 0.00 0.00 2.43
1991 2259 6.601332 AGATGTTTCAGGGTTGTTTTCTAGA 58.399 36.000 0.00 0.00 0.00 2.43
1992 2260 6.486993 AGATGTTTCAGGGTTGTTTTCTAGAC 59.513 38.462 0.00 0.00 0.00 2.59
1993 2261 4.573201 TGTTTCAGGGTTGTTTTCTAGACG 59.427 41.667 0.00 0.00 0.00 4.18
1994 2262 3.396260 TCAGGGTTGTTTTCTAGACGG 57.604 47.619 0.00 0.00 0.00 4.79
1995 2263 2.038033 TCAGGGTTGTTTTCTAGACGGG 59.962 50.000 0.00 0.00 0.00 5.28
1996 2264 1.350019 AGGGTTGTTTTCTAGACGGGG 59.650 52.381 0.00 0.00 0.00 5.73
1997 2265 1.612462 GGGTTGTTTTCTAGACGGGGG 60.612 57.143 0.00 0.00 0.00 5.40
2012 2280 3.664240 GGGGGCCTTATAAATCCGG 57.336 57.895 0.84 0.00 0.00 5.14
2013 2281 1.069775 GGGGGCCTTATAAATCCGGA 58.930 55.000 6.61 6.61 0.00 5.14
2014 2282 1.271762 GGGGGCCTTATAAATCCGGAC 60.272 57.143 6.12 0.00 0.00 4.79
2015 2283 1.703513 GGGGCCTTATAAATCCGGACT 59.296 52.381 6.12 0.00 0.00 3.85
2016 2284 2.908351 GGGGCCTTATAAATCCGGACTA 59.092 50.000 6.12 0.97 0.00 2.59
2017 2285 3.522343 GGGGCCTTATAAATCCGGACTAT 59.478 47.826 6.12 9.81 0.00 2.12
2018 2286 4.718276 GGGGCCTTATAAATCCGGACTATA 59.282 45.833 6.12 8.70 0.00 1.31
2019 2287 5.396101 GGGGCCTTATAAATCCGGACTATAC 60.396 48.000 6.12 0.10 0.00 1.47
2020 2288 5.424573 GGGCCTTATAAATCCGGACTATACT 59.575 44.000 6.12 0.00 0.00 2.12
2021 2289 6.406737 GGGCCTTATAAATCCGGACTATACTC 60.407 46.154 6.12 3.34 0.00 2.59
2022 2290 6.380560 GGCCTTATAAATCCGGACTATACTCT 59.619 42.308 6.12 0.00 0.00 3.24
2023 2291 7.259161 GCCTTATAAATCCGGACTATACTCTG 58.741 42.308 6.12 1.69 0.00 3.35
2024 2292 7.093858 GCCTTATAAATCCGGACTATACTCTGT 60.094 40.741 6.12 0.00 0.00 3.41
2025 2293 8.244802 CCTTATAAATCCGGACTATACTCTGTG 58.755 40.741 6.12 0.00 0.00 3.66
2026 2294 4.939052 AAATCCGGACTATACTCTGTGG 57.061 45.455 6.12 0.00 0.00 4.17
2027 2295 1.688772 TCCGGACTATACTCTGTGGC 58.311 55.000 0.00 0.00 0.00 5.01
2028 2296 1.214673 TCCGGACTATACTCTGTGGCT 59.785 52.381 0.00 0.00 0.00 4.75
2029 2297 2.032620 CCGGACTATACTCTGTGGCTT 58.967 52.381 0.00 0.00 0.00 4.35
2030 2298 3.117776 TCCGGACTATACTCTGTGGCTTA 60.118 47.826 0.00 0.00 0.00 3.09
2031 2299 3.004524 CCGGACTATACTCTGTGGCTTAC 59.995 52.174 0.00 0.00 0.00 2.34
2032 2300 3.303857 CGGACTATACTCTGTGGCTTACG 60.304 52.174 0.00 0.00 0.00 3.18
2033 2301 3.004524 GGACTATACTCTGTGGCTTACGG 59.995 52.174 0.00 0.00 36.99 4.02
2034 2302 2.957006 ACTATACTCTGTGGCTTACGGG 59.043 50.000 0.00 0.00 36.28 5.28
2035 2303 1.861982 ATACTCTGTGGCTTACGGGT 58.138 50.000 0.00 2.02 36.28 5.28
2036 2304 1.180029 TACTCTGTGGCTTACGGGTC 58.820 55.000 0.00 0.00 36.28 4.46
2037 2305 1.218316 CTCTGTGGCTTACGGGTCC 59.782 63.158 0.00 0.00 36.28 4.46
2038 2306 1.534476 TCTGTGGCTTACGGGTCCA 60.534 57.895 0.00 0.00 36.28 4.02
2039 2307 1.122632 TCTGTGGCTTACGGGTCCAA 61.123 55.000 0.00 0.00 36.28 3.53
2040 2308 0.035439 CTGTGGCTTACGGGTCCAAT 60.035 55.000 0.00 0.00 31.71 3.16
2041 2309 1.208535 CTGTGGCTTACGGGTCCAATA 59.791 52.381 0.00 0.00 31.71 1.90
2042 2310 1.629353 TGTGGCTTACGGGTCCAATAA 59.371 47.619 0.00 0.00 0.00 1.40
2043 2311 2.040012 TGTGGCTTACGGGTCCAATAAA 59.960 45.455 0.00 0.00 0.00 1.40
2044 2312 2.421073 GTGGCTTACGGGTCCAATAAAC 59.579 50.000 0.00 0.00 0.00 2.01
2045 2313 2.019249 GGCTTACGGGTCCAATAAACC 58.981 52.381 0.00 0.00 35.97 3.27
2050 2318 3.179925 GGGTCCAATAAACCCGGAC 57.820 57.895 0.73 0.00 46.66 4.79
2052 2320 2.771435 GTCCAATAAACCCGGACGG 58.229 57.895 0.73 3.25 39.86 4.79
2053 2321 0.249955 GTCCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 39.86 4.69
2054 2322 0.538118 TCCAATAAACCCGGACGGAG 59.462 55.000 13.13 5.04 37.50 4.63
2055 2323 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
2062 2330 2.274760 CCGGACGGAGGGAGTAGT 59.725 66.667 4.40 0.00 37.50 2.73
2151 2419 9.653287 TCGGATACCATATTCACTGATATTTTC 57.347 33.333 0.00 0.00 0.00 2.29
2152 2420 9.658799 CGGATACCATATTCACTGATATTTTCT 57.341 33.333 0.00 0.00 0.00 2.52
2291 2565 0.809385 TTCTACGACGCCAAGGAGAG 59.191 55.000 0.00 0.00 0.00 3.20
2350 2624 3.589988 GATCTGCTTCTCGGTTTCTTGA 58.410 45.455 0.00 0.00 0.00 3.02
2487 2765 5.970095 GCTTCATAGCAGGTGGATACCCG 62.970 56.522 0.00 0.00 46.95 5.28
2523 2801 1.921869 ATCCACCCCTTAGCCCGTTG 61.922 60.000 0.00 0.00 0.00 4.10
2548 2826 1.004080 CACCCTGACTGCTCCACTG 60.004 63.158 0.00 0.00 0.00 3.66
2697 2975 0.459237 CCTCTGCGATGTCTGTGACC 60.459 60.000 0.00 0.00 0.00 4.02
2751 3029 2.947652 GGTGGAGATGGACATTGACATG 59.052 50.000 0.00 0.00 36.34 3.21
2822 3100 3.056107 TGCAGACCAGTTACTGTATCCAC 60.056 47.826 11.68 4.67 36.62 4.02
2851 3129 1.896660 TTCCGTTGTCTTGCAGGCC 60.897 57.895 0.00 0.00 0.00 5.19
2965 3243 1.004044 CCTGTTGAGATGAGCCTGGTT 59.996 52.381 0.00 0.00 0.00 3.67
2997 3275 1.555075 TGATCAGTAAGTCCTGGTGGC 59.445 52.381 0.00 0.00 33.14 5.01
3049 3327 3.695606 TGGTGCCGTGCTCTCCTC 61.696 66.667 0.00 0.00 0.00 3.71
3086 3364 4.600111 TGTCCAGTCCCCTTACAAACTTAT 59.400 41.667 0.00 0.00 0.00 1.73
3102 3380 6.449698 CAAACTTATTTGGTGTCTGAATGCT 58.550 36.000 0.00 0.00 41.39 3.79
3137 3415 1.771854 TGTGGTGGTTTCCTTGCTCTA 59.228 47.619 0.00 0.00 0.00 2.43
3156 3434 8.032952 TGCTCTAAATGTAAAACTGTGATGAG 57.967 34.615 0.00 0.00 0.00 2.90
3280 3558 9.456147 TTCGGGAAAATGAACTCTTATTATTGA 57.544 29.630 0.00 0.00 0.00 2.57
3281 3559 9.627123 TCGGGAAAATGAACTCTTATTATTGAT 57.373 29.630 0.00 0.00 0.00 2.57
3335 3614 1.230635 CCGGCCTCTGCATTAATCGG 61.231 60.000 0.00 0.00 40.13 4.18
3353 3632 0.459585 GGTGCATGCAGCCATCTTTG 60.460 55.000 34.26 0.00 44.83 2.77
3368 3647 9.079833 CAGCCATCTTTGTTAATTATTTCACAG 57.920 33.333 0.00 0.00 0.00 3.66
3481 3760 0.246360 ATCGGTGTTGTCGCTGATCA 59.754 50.000 0.00 0.00 43.98 2.92
3517 3796 2.904866 GACCAACAGCCGGTGCAA 60.905 61.111 1.90 0.00 41.13 4.08
3562 3843 1.131826 CACGTTTTAGAAGCCGCCG 59.868 57.895 0.00 0.00 0.00 6.46
3575 3856 1.439228 CCGCCGTCATCATCAGACT 59.561 57.895 0.00 0.00 33.89 3.24
3598 3879 4.272489 ACTGACTCATCTTCAGGAGAGAG 58.728 47.826 4.48 4.44 44.19 3.20
3599 3880 4.018506 ACTGACTCATCTTCAGGAGAGAGA 60.019 45.833 10.58 0.00 44.19 3.10
3619 3903 2.125552 CGCATCGTCCTTGCCAGA 60.126 61.111 0.00 0.00 36.75 3.86
3641 3925 4.129737 ACATCCGTCGAGGCCACG 62.130 66.667 17.19 17.19 40.77 4.94
3643 3927 3.518998 ATCCGTCGAGGCCACGAG 61.519 66.667 26.08 18.09 42.88 4.18
3654 3938 2.361610 CCACGAGGCAGCCCAATT 60.362 61.111 8.22 0.00 0.00 2.32
3741 4025 1.142667 TGACAACCAGGCATGACTCAA 59.857 47.619 0.00 0.00 0.00 3.02
3752 4036 2.416836 GCATGACTCAACGTAGCACCTA 60.417 50.000 0.00 0.00 0.00 3.08
3803 4087 0.322975 AGCTCCATGCAAGACGAAGT 59.677 50.000 0.00 0.00 46.28 3.01
3930 4214 4.629523 GGTTTCCCCCGTGTGCGA 62.630 66.667 0.00 0.00 41.33 5.10
3931 4215 2.359478 GTTTCCCCCGTGTGCGAT 60.359 61.111 0.00 0.00 41.33 4.58
3932 4216 1.078988 GTTTCCCCCGTGTGCGATA 60.079 57.895 0.00 0.00 41.33 2.92
3933 4217 1.087771 GTTTCCCCCGTGTGCGATAG 61.088 60.000 0.00 0.00 41.33 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.292713 ACCGGACAAACAATACCTTTATTTT 57.707 32.000 9.46 0.00 0.00 1.82
24 25 6.904463 ACCGGACAAACAATACCTTTATTT 57.096 33.333 9.46 0.00 0.00 1.40
25 26 9.683870 TTATACCGGACAAACAATACCTTTATT 57.316 29.630 9.46 0.00 0.00 1.40
26 27 9.683870 TTTATACCGGACAAACAATACCTTTAT 57.316 29.630 9.46 0.00 0.00 1.40
30 31 7.114095 ACATTTATACCGGACAAACAATACCT 58.886 34.615 9.46 0.00 0.00 3.08
31 32 7.324354 ACATTTATACCGGACAAACAATACC 57.676 36.000 9.46 0.00 0.00 2.73
42 48 7.176490 CCCCCATAATAAACATTTATACCGGA 58.824 38.462 9.46 0.00 33.25 5.14
43 49 7.399245 CCCCCATAATAAACATTTATACCGG 57.601 40.000 0.00 0.00 33.25 5.28
70 76 1.723220 GCCTGGTAACCGAGTTTCTC 58.277 55.000 0.00 0.00 0.00 2.87
99 105 1.350071 TCTGGTTACTGGGCGGTAAA 58.650 50.000 3.84 0.00 34.11 2.01
109 115 1.497286 TGGCCAAAGGTTCTGGTTACT 59.503 47.619 0.61 0.00 36.24 2.24
124 130 3.216800 GCACATTCTTCATAGATGGCCA 58.783 45.455 8.56 8.56 0.00 5.36
144 150 5.915196 GTGTGAAGTTATGACAAAGAAAGGC 59.085 40.000 0.00 0.00 0.00 4.35
183 189 4.568592 CCTCTTGGCCCTTCTAGAACAATT 60.569 45.833 0.00 0.00 0.00 2.32
214 220 2.691984 ATCCCGCGTAAAACAAACAC 57.308 45.000 4.92 0.00 0.00 3.32
215 221 4.825546 TTAATCCCGCGTAAAACAAACA 57.174 36.364 4.92 0.00 0.00 2.83
216 222 5.117440 CCTTTTAATCCCGCGTAAAACAAAC 59.883 40.000 4.92 0.00 0.00 2.93
219 225 3.190953 CCCTTTTAATCCCGCGTAAAACA 59.809 43.478 4.92 0.00 0.00 2.83
220 226 3.439825 TCCCTTTTAATCCCGCGTAAAAC 59.560 43.478 4.92 0.00 0.00 2.43
222 228 3.347077 TCCCTTTTAATCCCGCGTAAA 57.653 42.857 4.92 0.00 0.00 2.01
223 229 3.564053 ATCCCTTTTAATCCCGCGTAA 57.436 42.857 4.92 0.00 0.00 3.18
225 231 2.430248 AATCCCTTTTAATCCCGCGT 57.570 45.000 4.92 0.00 0.00 6.01
226 232 2.685897 TGAAATCCCTTTTAATCCCGCG 59.314 45.455 0.00 0.00 0.00 6.46
227 233 4.937201 ATGAAATCCCTTTTAATCCCGC 57.063 40.909 0.00 0.00 0.00 6.13
232 241 7.841222 ACCTTGAGCTATGAAATCCCTTTTAAT 59.159 33.333 0.00 0.00 0.00 1.40
245 254 3.582647 TGTTTCTCCACCTTGAGCTATGA 59.417 43.478 0.00 0.00 32.22 2.15
268 277 1.556911 AGGTGCACTCTGTATGGAAGG 59.443 52.381 17.98 0.00 0.00 3.46
286 295 0.109342 CCAGGCCCTGCTAATGTAGG 59.891 60.000 4.81 0.00 44.34 3.18
287 296 0.839946 ACCAGGCCCTGCTAATGTAG 59.160 55.000 4.81 0.00 0.00 2.74
309 318 1.873486 GCAAGAACGGCAATTTGGCTT 60.873 47.619 19.30 8.66 41.25 4.35
314 323 3.821033 AGTAGAAGCAAGAACGGCAATTT 59.179 39.130 0.00 0.00 0.00 1.82
322 331 2.095364 TCGGTCGAGTAGAAGCAAGAAC 60.095 50.000 0.00 0.00 0.00 3.01
341 350 5.344066 TCAGTCATAGCTTAGCTTCTTTCG 58.656 41.667 13.44 0.00 40.44 3.46
411 421 7.334421 AGCGATCACAACACAGATAAAAACTAT 59.666 33.333 0.00 0.00 0.00 2.12
419 429 3.056891 TGTCAGCGATCACAACACAGATA 60.057 43.478 0.00 0.00 0.00 1.98
423 433 1.946745 TTGTCAGCGATCACAACACA 58.053 45.000 0.00 0.00 0.00 3.72
426 436 4.394795 GTTACATTGTCAGCGATCACAAC 58.605 43.478 0.00 0.00 35.37 3.32
427 437 3.435327 GGTTACATTGTCAGCGATCACAA 59.565 43.478 0.00 0.00 36.94 3.33
432 442 3.374988 CACATGGTTACATTGTCAGCGAT 59.625 43.478 0.00 0.00 34.35 4.58
466 476 2.894126 TCGGGCACATGGTTACATTTTT 59.106 40.909 0.00 0.00 34.35 1.94
467 477 2.520069 TCGGGCACATGGTTACATTTT 58.480 42.857 0.00 0.00 34.35 1.82
468 478 2.208132 TCGGGCACATGGTTACATTT 57.792 45.000 0.00 0.00 34.35 2.32
469 479 2.435372 ATCGGGCACATGGTTACATT 57.565 45.000 0.00 0.00 34.35 2.71
470 480 2.435372 AATCGGGCACATGGTTACAT 57.565 45.000 0.00 0.00 37.99 2.29
471 481 3.351794 TTAATCGGGCACATGGTTACA 57.648 42.857 0.00 0.00 0.00 2.41
472 482 6.877322 AGTATATTAATCGGGCACATGGTTAC 59.123 38.462 0.00 0.00 0.00 2.50
473 483 7.011499 AGTATATTAATCGGGCACATGGTTA 57.989 36.000 0.00 0.00 0.00 2.85
474 484 5.876357 AGTATATTAATCGGGCACATGGTT 58.124 37.500 0.00 0.00 0.00 3.67
475 485 5.499004 AGTATATTAATCGGGCACATGGT 57.501 39.130 0.00 0.00 0.00 3.55
476 486 5.063438 CGAAGTATATTAATCGGGCACATGG 59.937 44.000 0.00 0.00 0.00 3.66
477 487 5.445939 GCGAAGTATATTAATCGGGCACATG 60.446 44.000 0.00 0.00 35.91 3.21
478 488 4.630069 GCGAAGTATATTAATCGGGCACAT 59.370 41.667 0.00 0.00 35.91 3.21
535 549 9.896645 AAATCTTCTCTTCTATTTGCACAGATA 57.103 29.630 0.00 0.00 0.00 1.98
573 609 6.503524 CCGAAAAAGAGGAGAAAAATGACAA 58.496 36.000 0.00 0.00 0.00 3.18
598 634 0.462047 CCGGGGTTTCAATCTCCTCG 60.462 60.000 0.00 0.00 43.82 4.63
625 661 1.062258 GCAACCGTCGTCGTTTGATA 58.938 50.000 15.52 0.00 40.88 2.15
631 667 2.431942 GATGGCAACCGTCGTCGT 60.432 61.111 0.71 0.00 35.01 4.34
644 680 8.095169 ACTAAGAAAAGGTAGTTACACAGATGG 58.905 37.037 0.00 0.00 0.00 3.51
653 689 8.025445 GTGATGTCGACTAAGAAAAGGTAGTTA 58.975 37.037 17.92 0.00 30.65 2.24
659 695 3.933332 GGGTGATGTCGACTAAGAAAAGG 59.067 47.826 17.92 0.00 0.00 3.11
703 740 1.071814 TGGTTTAGCCCACCGACAC 59.928 57.895 0.00 0.00 37.07 3.67
821 859 3.264897 GCGCCTACATGCCGTGAG 61.265 66.667 0.00 0.00 0.00 3.51
822 860 4.075854 TGCGCCTACATGCCGTGA 62.076 61.111 4.18 0.00 0.00 4.35
823 861 3.864686 GTGCGCCTACATGCCGTG 61.865 66.667 4.18 0.00 0.00 4.94
824 862 4.082523 AGTGCGCCTACATGCCGT 62.083 61.111 4.18 0.00 0.00 5.68
825 863 3.264897 GAGTGCGCCTACATGCCG 61.265 66.667 4.18 0.00 0.00 5.69
826 864 3.264897 CGAGTGCGCCTACATGCC 61.265 66.667 4.18 0.00 0.00 4.40
980 1046 1.479323 TGGGTGCAGACTATTCGTACC 59.521 52.381 0.00 0.00 33.47 3.34
1113 1187 1.227380 GCAGAACTGGATCGCGGAT 60.227 57.895 6.13 0.00 0.00 4.18
1289 1363 0.100682 TCACGCATTAGCTCGTCTCC 59.899 55.000 0.00 0.00 36.73 3.71
1297 1378 3.001395 ACTAGATCGTCACGCATTAGC 57.999 47.619 0.00 0.00 37.42 3.09
1298 1379 4.613448 GCTAACTAGATCGTCACGCATTAG 59.387 45.833 0.00 0.00 0.00 1.73
1305 1386 1.945394 TCGGGCTAACTAGATCGTCAC 59.055 52.381 0.00 0.00 0.00 3.67
1309 1390 3.340034 AGAGATCGGGCTAACTAGATCG 58.660 50.000 0.00 0.00 42.94 3.69
1327 1434 5.656213 AATCAAGAATTCAAGGCCAAGAG 57.344 39.130 5.01 0.00 0.00 2.85
1399 1519 0.949105 AACGCATCGTGGGTGAAGTC 60.949 55.000 8.09 0.00 43.03 3.01
1400 1520 0.949105 GAACGCATCGTGGGTGAAGT 60.949 55.000 8.09 0.00 43.03 3.01
1462 1582 1.541588 GTCCATGACTTTCCAACAGCC 59.458 52.381 0.00 0.00 0.00 4.85
1657 1789 3.052082 CTTGGGCCAGCTGACACG 61.052 66.667 17.39 5.24 0.00 4.49
1688 1956 7.672983 TCAACTTCTGGAGTAAATTGATGAC 57.327 36.000 0.00 0.00 37.72 3.06
1697 1965 6.772716 AGAAAATGCTTCAACTTCTGGAGTAA 59.227 34.615 0.00 0.00 37.72 2.24
1698 1966 6.299141 AGAAAATGCTTCAACTTCTGGAGTA 58.701 36.000 0.00 0.00 37.72 2.59
1699 1967 5.136105 AGAAAATGCTTCAACTTCTGGAGT 58.864 37.500 0.00 0.00 41.47 3.85
1700 1968 5.472820 AGAGAAAATGCTTCAACTTCTGGAG 59.527 40.000 0.00 0.00 33.10 3.86
1701 1969 5.380043 AGAGAAAATGCTTCAACTTCTGGA 58.620 37.500 0.00 0.00 0.00 3.86
1702 1970 5.702349 AGAGAAAATGCTTCAACTTCTGG 57.298 39.130 0.00 0.00 0.00 3.86
1703 1971 7.432350 AGTAGAGAAAATGCTTCAACTTCTG 57.568 36.000 0.00 0.00 0.00 3.02
1728 1996 1.202627 CGGACGGAGGTAGTACTAGCT 60.203 57.143 29.81 29.81 45.49 3.32
1729 1997 1.224965 CGGACGGAGGTAGTACTAGC 58.775 60.000 21.85 21.85 0.00 3.42
1730 1998 1.414181 TCCGGACGGAGGTAGTACTAG 59.586 57.143 9.76 0.00 39.76 2.57
1731 1999 1.496060 TCCGGACGGAGGTAGTACTA 58.504 55.000 9.76 0.00 39.76 1.82
1732 2000 2.300996 TCCGGACGGAGGTAGTACT 58.699 57.895 9.76 0.00 39.76 2.73
1733 2001 4.963878 TCCGGACGGAGGTAGTAC 57.036 61.111 9.76 0.00 39.76 2.73
1742 2010 1.170290 GGCCCAATAAATCCGGACGG 61.170 60.000 6.12 3.96 0.00 4.79
1743 2011 0.179029 AGGCCCAATAAATCCGGACG 60.179 55.000 6.12 0.00 0.00 4.79
1744 2012 1.143073 AGAGGCCCAATAAATCCGGAC 59.857 52.381 6.12 0.00 0.00 4.79
1745 2013 1.518367 AGAGGCCCAATAAATCCGGA 58.482 50.000 6.61 6.61 0.00 5.14
1746 2014 3.412386 CTTAGAGGCCCAATAAATCCGG 58.588 50.000 0.00 0.00 0.00 5.14
1747 2015 2.814336 GCTTAGAGGCCCAATAAATCCG 59.186 50.000 0.00 0.00 0.00 4.18
1748 2016 3.157881 GGCTTAGAGGCCCAATAAATCC 58.842 50.000 0.00 0.00 45.92 3.01
1759 2027 1.661498 GGCTGCTTTGGCTTAGAGGC 61.661 60.000 0.00 0.00 41.77 4.70
1760 2028 0.322816 TGGCTGCTTTGGCTTAGAGG 60.323 55.000 0.00 0.00 39.59 3.69
1761 2029 1.538047 TTGGCTGCTTTGGCTTAGAG 58.462 50.000 0.00 0.00 39.59 2.43
1762 2030 1.613437 GTTTGGCTGCTTTGGCTTAGA 59.387 47.619 0.00 0.00 39.59 2.10
1763 2031 1.337167 GGTTTGGCTGCTTTGGCTTAG 60.337 52.381 0.00 0.00 39.59 2.18
1764 2032 0.678950 GGTTTGGCTGCTTTGGCTTA 59.321 50.000 0.00 0.00 39.59 3.09
1765 2033 1.336632 TGGTTTGGCTGCTTTGGCTT 61.337 50.000 0.00 0.00 39.59 4.35
1766 2034 1.336632 TTGGTTTGGCTGCTTTGGCT 61.337 50.000 0.00 0.00 39.59 4.75
1767 2035 0.881600 CTTGGTTTGGCTGCTTTGGC 60.882 55.000 0.00 0.00 39.26 4.52
1768 2036 0.752054 TCTTGGTTTGGCTGCTTTGG 59.248 50.000 0.00 0.00 0.00 3.28
1769 2037 1.682854 TCTCTTGGTTTGGCTGCTTTG 59.317 47.619 0.00 0.00 0.00 2.77
1770 2038 1.683385 GTCTCTTGGTTTGGCTGCTTT 59.317 47.619 0.00 0.00 0.00 3.51
1771 2039 1.322442 GTCTCTTGGTTTGGCTGCTT 58.678 50.000 0.00 0.00 0.00 3.91
1772 2040 0.183492 TGTCTCTTGGTTTGGCTGCT 59.817 50.000 0.00 0.00 0.00 4.24
1773 2041 1.251251 ATGTCTCTTGGTTTGGCTGC 58.749 50.000 0.00 0.00 0.00 5.25
1774 2042 3.318839 TCAAATGTCTCTTGGTTTGGCTG 59.681 43.478 0.00 0.00 33.55 4.85
1775 2043 3.565307 TCAAATGTCTCTTGGTTTGGCT 58.435 40.909 0.00 0.00 33.55 4.75
1776 2044 4.525912 ATCAAATGTCTCTTGGTTTGGC 57.474 40.909 0.00 0.00 33.55 4.52
1777 2045 9.492973 AAATAAATCAAATGTCTCTTGGTTTGG 57.507 29.630 4.48 0.00 37.59 3.28
1779 2047 9.410556 CGAAATAAATCAAATGTCTCTTGGTTT 57.589 29.630 0.11 0.11 39.71 3.27
1780 2048 7.542130 GCGAAATAAATCAAATGTCTCTTGGTT 59.458 33.333 0.00 0.00 0.00 3.67
1781 2049 7.029563 GCGAAATAAATCAAATGTCTCTTGGT 58.970 34.615 0.00 0.00 0.00 3.67
1782 2050 7.028962 TGCGAAATAAATCAAATGTCTCTTGG 58.971 34.615 0.00 0.00 0.00 3.61
1783 2051 7.752239 ACTGCGAAATAAATCAAATGTCTCTTG 59.248 33.333 0.00 0.00 0.00 3.02
1784 2052 7.820648 ACTGCGAAATAAATCAAATGTCTCTT 58.179 30.769 0.00 0.00 0.00 2.85
1785 2053 7.383102 ACTGCGAAATAAATCAAATGTCTCT 57.617 32.000 0.00 0.00 0.00 3.10
1786 2054 9.000018 GTTACTGCGAAATAAATCAAATGTCTC 58.000 33.333 0.00 0.00 0.00 3.36
1787 2055 8.730680 AGTTACTGCGAAATAAATCAAATGTCT 58.269 29.630 0.00 0.00 0.00 3.41
1788 2056 8.895932 AGTTACTGCGAAATAAATCAAATGTC 57.104 30.769 0.00 0.00 0.00 3.06
1789 2057 9.769093 GTAGTTACTGCGAAATAAATCAAATGT 57.231 29.630 0.00 0.00 0.00 2.71
1790 2058 9.767684 TGTAGTTACTGCGAAATAAATCAAATG 57.232 29.630 0.00 0.00 0.00 2.32
1792 2060 9.767684 CATGTAGTTACTGCGAAATAAATCAAA 57.232 29.630 0.00 0.00 0.00 2.69
1793 2061 7.908082 GCATGTAGTTACTGCGAAATAAATCAA 59.092 33.333 0.00 0.00 0.00 2.57
1794 2062 7.406553 GCATGTAGTTACTGCGAAATAAATCA 58.593 34.615 0.00 0.00 0.00 2.57
1795 2063 6.851330 GGCATGTAGTTACTGCGAAATAAATC 59.149 38.462 0.00 0.00 36.76 2.17
1796 2064 6.511121 CGGCATGTAGTTACTGCGAAATAAAT 60.511 38.462 0.00 0.00 36.76 1.40
1797 2065 5.220510 CGGCATGTAGTTACTGCGAAATAAA 60.221 40.000 0.00 0.00 36.76 1.40
1798 2066 4.269123 CGGCATGTAGTTACTGCGAAATAA 59.731 41.667 0.00 0.00 36.76 1.40
1799 2067 3.799963 CGGCATGTAGTTACTGCGAAATA 59.200 43.478 0.00 0.00 36.76 1.40
1800 2068 2.607635 CGGCATGTAGTTACTGCGAAAT 59.392 45.455 0.00 0.00 36.76 2.17
1801 2069 1.996898 CGGCATGTAGTTACTGCGAAA 59.003 47.619 0.00 0.00 36.76 3.46
1802 2070 1.067425 ACGGCATGTAGTTACTGCGAA 60.067 47.619 0.00 0.00 36.76 4.70
1803 2071 0.528924 ACGGCATGTAGTTACTGCGA 59.471 50.000 0.00 0.00 36.76 5.10
1804 2072 0.921347 GACGGCATGTAGTTACTGCG 59.079 55.000 0.00 0.00 36.76 5.18
1805 2073 1.287425 GGACGGCATGTAGTTACTGC 58.713 55.000 0.00 0.00 35.16 4.40
1806 2074 1.480954 AGGGACGGCATGTAGTTACTG 59.519 52.381 0.00 0.00 0.00 2.74
1807 2075 1.755380 GAGGGACGGCATGTAGTTACT 59.245 52.381 0.00 0.00 0.00 2.24
1808 2076 1.535437 CGAGGGACGGCATGTAGTTAC 60.535 57.143 0.00 0.00 38.46 2.50
1809 2077 0.742505 CGAGGGACGGCATGTAGTTA 59.257 55.000 0.00 0.00 38.46 2.24
1810 2078 0.968901 TCGAGGGACGGCATGTAGTT 60.969 55.000 0.00 0.00 42.82 2.24
1811 2079 0.968901 TTCGAGGGACGGCATGTAGT 60.969 55.000 0.00 0.00 42.82 2.73
1812 2080 0.174845 TTTCGAGGGACGGCATGTAG 59.825 55.000 0.00 0.00 42.82 2.74
1813 2081 0.108520 GTTTCGAGGGACGGCATGTA 60.109 55.000 0.00 0.00 42.82 2.29
1814 2082 1.375523 GTTTCGAGGGACGGCATGT 60.376 57.895 0.00 0.00 42.82 3.21
1815 2083 1.375396 TGTTTCGAGGGACGGCATG 60.375 57.895 0.00 0.00 42.82 4.06
1816 2084 1.375523 GTGTTTCGAGGGACGGCAT 60.376 57.895 0.00 0.00 42.82 4.40
1817 2085 2.029964 GTGTTTCGAGGGACGGCA 59.970 61.111 0.00 0.00 42.82 5.69
1818 2086 3.110178 CGTGTTTCGAGGGACGGC 61.110 66.667 4.73 0.00 42.86 5.68
1819 2087 2.431942 CCGTGTTTCGAGGGACGG 60.432 66.667 14.36 14.36 44.86 4.79
1820 2088 3.110178 GCCGTGTTTCGAGGGACG 61.110 66.667 5.48 5.48 42.86 4.79
1821 2089 3.110178 CGCCGTGTTTCGAGGGAC 61.110 66.667 0.00 0.00 42.86 4.46
1822 2090 3.277211 CTCGCCGTGTTTCGAGGGA 62.277 63.158 3.96 0.00 45.89 4.20
1823 2091 2.809601 CTCGCCGTGTTTCGAGGG 60.810 66.667 3.96 0.00 45.89 4.30
1826 2094 2.733218 CTGCTCGCCGTGTTTCGA 60.733 61.111 0.00 0.00 42.86 3.71
1827 2095 4.430423 GCTGCTCGCCGTGTTTCG 62.430 66.667 0.00 0.00 39.52 3.46
1828 2096 3.016474 GAGCTGCTCGCCGTGTTTC 62.016 63.158 14.68 0.00 40.39 2.78
1829 2097 3.044305 GAGCTGCTCGCCGTGTTT 61.044 61.111 14.68 0.00 40.39 2.83
1836 2104 4.810661 AGAAGCCGAGCTGCTCGC 62.811 66.667 38.61 32.27 41.37 5.03
1840 2108 3.184683 CGTGAGAAGCCGAGCTGC 61.185 66.667 0.00 0.00 39.62 5.25
1841 2109 3.184683 GCGTGAGAAGCCGAGCTG 61.185 66.667 0.00 0.00 39.62 4.24
1842 2110 3.377759 AGCGTGAGAAGCCGAGCT 61.378 61.111 0.00 0.00 42.56 4.09
1843 2111 3.184683 CAGCGTGAGAAGCCGAGC 61.185 66.667 0.00 0.00 34.64 5.03
1844 2112 3.184683 GCAGCGTGAGAAGCCGAG 61.185 66.667 0.00 0.00 34.64 4.63
1845 2113 3.633094 GAGCAGCGTGAGAAGCCGA 62.633 63.158 0.00 0.00 33.67 5.54
1846 2114 3.184683 GAGCAGCGTGAGAAGCCG 61.185 66.667 0.00 0.00 33.67 5.52
1847 2115 1.809209 GAGAGCAGCGTGAGAAGCC 60.809 63.158 0.00 0.00 33.67 4.35
1848 2116 0.389687 AAGAGAGCAGCGTGAGAAGC 60.390 55.000 0.00 0.00 0.00 3.86
1849 2117 1.991965 GAAAGAGAGCAGCGTGAGAAG 59.008 52.381 0.00 0.00 0.00 2.85
1850 2118 1.337260 GGAAAGAGAGCAGCGTGAGAA 60.337 52.381 0.00 0.00 0.00 2.87
1851 2119 0.244994 GGAAAGAGAGCAGCGTGAGA 59.755 55.000 0.00 0.00 0.00 3.27
1852 2120 0.739112 GGGAAAGAGAGCAGCGTGAG 60.739 60.000 0.00 0.00 0.00 3.51
1853 2121 1.293498 GGGAAAGAGAGCAGCGTGA 59.707 57.895 0.00 0.00 0.00 4.35
1854 2122 0.392193 ATGGGAAAGAGAGCAGCGTG 60.392 55.000 0.00 0.00 0.00 5.34
1855 2123 0.392193 CATGGGAAAGAGAGCAGCGT 60.392 55.000 0.00 0.00 0.00 5.07
1856 2124 1.712977 GCATGGGAAAGAGAGCAGCG 61.713 60.000 0.00 0.00 0.00 5.18
1857 2125 1.382692 GGCATGGGAAAGAGAGCAGC 61.383 60.000 0.00 0.00 0.00 5.25
1858 2126 0.255318 AGGCATGGGAAAGAGAGCAG 59.745 55.000 0.00 0.00 0.00 4.24
1859 2127 0.034767 CAGGCATGGGAAAGAGAGCA 60.035 55.000 0.00 0.00 0.00 4.26
1860 2128 1.382692 GCAGGCATGGGAAAGAGAGC 61.383 60.000 0.00 0.00 0.00 4.09
1861 2129 0.034767 TGCAGGCATGGGAAAGAGAG 60.035 55.000 0.00 0.00 0.00 3.20
1862 2130 0.627451 ATGCAGGCATGGGAAAGAGA 59.373 50.000 5.87 0.00 35.03 3.10
1863 2131 3.202548 ATGCAGGCATGGGAAAGAG 57.797 52.632 5.87 0.00 35.03 2.85
1872 2140 0.973496 TGATTGGTGCATGCAGGCAT 60.973 50.000 30.32 13.72 46.92 4.40
1873 2141 1.606889 TGATTGGTGCATGCAGGCA 60.607 52.632 24.07 24.07 42.53 4.75
1874 2142 1.153706 GTGATTGGTGCATGCAGGC 60.154 57.895 23.41 18.05 0.00 4.85
1875 2143 0.892755 AAGTGATTGGTGCATGCAGG 59.107 50.000 23.41 0.00 0.00 4.85
1876 2144 1.816835 AGAAGTGATTGGTGCATGCAG 59.183 47.619 23.41 0.00 0.00 4.41
1877 2145 1.814394 GAGAAGTGATTGGTGCATGCA 59.186 47.619 18.46 18.46 0.00 3.96
1878 2146 1.814394 TGAGAAGTGATTGGTGCATGC 59.186 47.619 11.82 11.82 0.00 4.06
1879 2147 4.439700 GGATTGAGAAGTGATTGGTGCATG 60.440 45.833 0.00 0.00 0.00 4.06
1880 2148 3.698040 GGATTGAGAAGTGATTGGTGCAT 59.302 43.478 0.00 0.00 0.00 3.96
1881 2149 3.084039 GGATTGAGAAGTGATTGGTGCA 58.916 45.455 0.00 0.00 0.00 4.57
1882 2150 2.424956 GGGATTGAGAAGTGATTGGTGC 59.575 50.000 0.00 0.00 0.00 5.01
1883 2151 3.689347 TGGGATTGAGAAGTGATTGGTG 58.311 45.455 0.00 0.00 0.00 4.17
1884 2152 3.875369 GCTGGGATTGAGAAGTGATTGGT 60.875 47.826 0.00 0.00 0.00 3.67
1885 2153 2.686915 GCTGGGATTGAGAAGTGATTGG 59.313 50.000 0.00 0.00 0.00 3.16
1886 2154 3.618351 AGCTGGGATTGAGAAGTGATTG 58.382 45.455 0.00 0.00 0.00 2.67
1887 2155 3.265221 TGAGCTGGGATTGAGAAGTGATT 59.735 43.478 0.00 0.00 0.00 2.57
1888 2156 2.842496 TGAGCTGGGATTGAGAAGTGAT 59.158 45.455 0.00 0.00 0.00 3.06
1889 2157 2.027745 GTGAGCTGGGATTGAGAAGTGA 60.028 50.000 0.00 0.00 0.00 3.41
1890 2158 2.354259 GTGAGCTGGGATTGAGAAGTG 58.646 52.381 0.00 0.00 0.00 3.16
1891 2159 1.066573 CGTGAGCTGGGATTGAGAAGT 60.067 52.381 0.00 0.00 0.00 3.01
1892 2160 1.649664 CGTGAGCTGGGATTGAGAAG 58.350 55.000 0.00 0.00 0.00 2.85
1893 2161 3.840831 CGTGAGCTGGGATTGAGAA 57.159 52.632 0.00 0.00 0.00 2.87
1927 2195 0.657840 CCACGCTAATTGCACTAGGC 59.342 55.000 0.00 0.00 43.06 3.93
1928 2196 0.657840 GCCACGCTAATTGCACTAGG 59.342 55.000 0.00 0.00 43.06 3.02
1929 2197 1.368641 TGCCACGCTAATTGCACTAG 58.631 50.000 0.00 0.00 43.06 2.57
1930 2198 2.036958 ATGCCACGCTAATTGCACTA 57.963 45.000 0.00 0.00 43.06 2.74
1931 2199 1.176527 AATGCCACGCTAATTGCACT 58.823 45.000 0.00 0.00 43.06 4.40
1932 2200 2.842208 TAATGCCACGCTAATTGCAC 57.158 45.000 0.00 0.00 43.06 4.57
1933 2201 3.768406 CTTTAATGCCACGCTAATTGCA 58.232 40.909 0.00 0.00 43.06 4.08
1934 2202 2.535574 GCTTTAATGCCACGCTAATTGC 59.464 45.455 1.93 0.00 38.57 3.56
1935 2203 4.032703 AGCTTTAATGCCACGCTAATTG 57.967 40.909 9.56 0.00 0.00 2.32
1936 2204 3.066760 GGAGCTTTAATGCCACGCTAATT 59.933 43.478 9.56 0.00 0.00 1.40
1937 2205 2.618709 GGAGCTTTAATGCCACGCTAAT 59.381 45.455 9.56 0.00 0.00 1.73
1938 2206 2.014128 GGAGCTTTAATGCCACGCTAA 58.986 47.619 9.56 0.00 0.00 3.09
1939 2207 1.209504 AGGAGCTTTAATGCCACGCTA 59.790 47.619 9.56 0.00 0.00 4.26
1940 2208 0.035056 AGGAGCTTTAATGCCACGCT 60.035 50.000 9.56 0.00 0.00 5.07
1941 2209 0.099436 CAGGAGCTTTAATGCCACGC 59.901 55.000 9.56 0.00 0.00 5.34
1942 2210 0.099436 GCAGGAGCTTTAATGCCACG 59.901 55.000 9.56 0.00 37.91 4.94
1954 2222 5.376854 TGAAACATCTAAAAAGCAGGAGC 57.623 39.130 0.00 0.00 42.56 4.70
1955 2223 5.105997 CCCTGAAACATCTAAAAAGCAGGAG 60.106 44.000 0.00 0.00 43.22 3.69
1956 2224 4.766891 CCCTGAAACATCTAAAAAGCAGGA 59.233 41.667 0.00 0.00 43.22 3.86
1957 2225 4.524328 ACCCTGAAACATCTAAAAAGCAGG 59.476 41.667 0.00 0.00 40.92 4.85
1958 2226 5.712152 ACCCTGAAACATCTAAAAAGCAG 57.288 39.130 0.00 0.00 0.00 4.24
1959 2227 5.362430 ACAACCCTGAAACATCTAAAAAGCA 59.638 36.000 0.00 0.00 0.00 3.91
1960 2228 5.842907 ACAACCCTGAAACATCTAAAAAGC 58.157 37.500 0.00 0.00 0.00 3.51
1961 2229 8.716646 AAAACAACCCTGAAACATCTAAAAAG 57.283 30.769 0.00 0.00 0.00 2.27
1962 2230 8.536175 AGAAAACAACCCTGAAACATCTAAAAA 58.464 29.630 0.00 0.00 0.00 1.94
1963 2231 8.073467 AGAAAACAACCCTGAAACATCTAAAA 57.927 30.769 0.00 0.00 0.00 1.52
1964 2232 7.654022 AGAAAACAACCCTGAAACATCTAAA 57.346 32.000 0.00 0.00 0.00 1.85
1965 2233 8.215050 TCTAGAAAACAACCCTGAAACATCTAA 58.785 33.333 0.00 0.00 0.00 2.10
1966 2234 7.660208 GTCTAGAAAACAACCCTGAAACATCTA 59.340 37.037 0.00 0.00 0.00 1.98
1967 2235 6.486993 GTCTAGAAAACAACCCTGAAACATCT 59.513 38.462 0.00 0.00 0.00 2.90
1968 2236 6.565999 CGTCTAGAAAACAACCCTGAAACATC 60.566 42.308 0.00 0.00 0.00 3.06
1969 2237 5.238650 CGTCTAGAAAACAACCCTGAAACAT 59.761 40.000 0.00 0.00 0.00 2.71
1970 2238 4.573201 CGTCTAGAAAACAACCCTGAAACA 59.427 41.667 0.00 0.00 0.00 2.83
1971 2239 4.024302 CCGTCTAGAAAACAACCCTGAAAC 60.024 45.833 0.00 0.00 0.00 2.78
1972 2240 4.131596 CCGTCTAGAAAACAACCCTGAAA 58.868 43.478 0.00 0.00 0.00 2.69
1973 2241 3.495453 CCCGTCTAGAAAACAACCCTGAA 60.495 47.826 0.00 0.00 0.00 3.02
1974 2242 2.038033 CCCGTCTAGAAAACAACCCTGA 59.962 50.000 0.00 0.00 0.00 3.86
1975 2243 2.423577 CCCGTCTAGAAAACAACCCTG 58.576 52.381 0.00 0.00 0.00 4.45
1976 2244 1.350019 CCCCGTCTAGAAAACAACCCT 59.650 52.381 0.00 0.00 0.00 4.34
1977 2245 1.612462 CCCCCGTCTAGAAAACAACCC 60.612 57.143 0.00 0.00 0.00 4.11
1978 2246 1.817357 CCCCCGTCTAGAAAACAACC 58.183 55.000 0.00 0.00 0.00 3.77
1994 2262 1.069775 TCCGGATTTATAAGGCCCCC 58.930 55.000 0.00 0.00 0.00 5.40
1995 2263 1.703513 AGTCCGGATTTATAAGGCCCC 59.296 52.381 7.81 0.00 0.00 5.80
1996 2264 4.838904 ATAGTCCGGATTTATAAGGCCC 57.161 45.455 7.81 0.00 0.00 5.80
1997 2265 6.380560 AGAGTATAGTCCGGATTTATAAGGCC 59.619 42.308 7.81 0.00 0.00 5.19
1998 2266 7.093858 ACAGAGTATAGTCCGGATTTATAAGGC 60.094 40.741 7.81 6.64 0.00 4.35
1999 2267 8.244802 CACAGAGTATAGTCCGGATTTATAAGG 58.755 40.741 7.81 6.64 0.00 2.69
2000 2268 8.244802 CCACAGAGTATAGTCCGGATTTATAAG 58.755 40.741 7.81 7.24 0.00 1.73
2001 2269 7.309621 GCCACAGAGTATAGTCCGGATTTATAA 60.310 40.741 7.81 0.00 0.00 0.98
2002 2270 6.152323 GCCACAGAGTATAGTCCGGATTTATA 59.848 42.308 7.81 10.80 0.00 0.98
2003 2271 5.047235 GCCACAGAGTATAGTCCGGATTTAT 60.047 44.000 7.81 11.85 0.00 1.40
2004 2272 4.280174 GCCACAGAGTATAGTCCGGATTTA 59.720 45.833 7.81 4.00 0.00 1.40
2005 2273 3.069729 GCCACAGAGTATAGTCCGGATTT 59.930 47.826 7.81 1.29 0.00 2.17
2006 2274 2.628657 GCCACAGAGTATAGTCCGGATT 59.371 50.000 7.81 5.90 0.00 3.01
2007 2275 2.158445 AGCCACAGAGTATAGTCCGGAT 60.158 50.000 7.81 0.00 0.00 4.18
2008 2276 1.214673 AGCCACAGAGTATAGTCCGGA 59.785 52.381 0.00 0.00 0.00 5.14
2009 2277 1.693627 AGCCACAGAGTATAGTCCGG 58.306 55.000 3.84 0.00 0.00 5.14
2010 2278 3.303857 CGTAAGCCACAGAGTATAGTCCG 60.304 52.174 3.84 0.00 0.00 4.79
2011 2279 3.004524 CCGTAAGCCACAGAGTATAGTCC 59.995 52.174 3.84 0.00 0.00 3.85
2012 2280 3.004524 CCCGTAAGCCACAGAGTATAGTC 59.995 52.174 0.00 0.00 0.00 2.59
2013 2281 2.957006 CCCGTAAGCCACAGAGTATAGT 59.043 50.000 0.00 0.00 0.00 2.12
2014 2282 2.957006 ACCCGTAAGCCACAGAGTATAG 59.043 50.000 0.00 0.00 0.00 1.31
2015 2283 2.954318 GACCCGTAAGCCACAGAGTATA 59.046 50.000 0.00 0.00 0.00 1.47
2016 2284 1.755380 GACCCGTAAGCCACAGAGTAT 59.245 52.381 0.00 0.00 0.00 2.12
2017 2285 1.180029 GACCCGTAAGCCACAGAGTA 58.820 55.000 0.00 0.00 0.00 2.59
2018 2286 1.542187 GGACCCGTAAGCCACAGAGT 61.542 60.000 0.00 0.00 0.00 3.24
2019 2287 1.218316 GGACCCGTAAGCCACAGAG 59.782 63.158 0.00 0.00 0.00 3.35
2020 2288 1.122632 TTGGACCCGTAAGCCACAGA 61.123 55.000 0.00 0.00 0.00 3.41
2021 2289 0.035439 ATTGGACCCGTAAGCCACAG 60.035 55.000 0.00 0.00 0.00 3.66
2022 2290 1.277579 TATTGGACCCGTAAGCCACA 58.722 50.000 0.00 0.00 0.00 4.17
2023 2291 2.406596 TTATTGGACCCGTAAGCCAC 57.593 50.000 0.00 0.00 0.00 5.01
2024 2292 2.618559 GGTTTATTGGACCCGTAAGCCA 60.619 50.000 11.57 0.00 31.44 4.75
2025 2293 2.019249 GGTTTATTGGACCCGTAAGCC 58.981 52.381 4.00 4.00 0.00 4.35
2026 2294 2.019249 GGGTTTATTGGACCCGTAAGC 58.981 52.381 0.00 0.00 46.71 3.09
2034 2302 0.249955 TCCGTCCGGGTTTATTGGAC 59.750 55.000 0.00 0.55 46.91 4.02
2035 2303 0.538118 CTCCGTCCGGGTTTATTGGA 59.462 55.000 0.00 0.00 37.00 3.53
2036 2304 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
2037 2305 0.463116 CCCTCCGTCCGGGTTTATTG 60.463 60.000 0.00 0.00 36.91 1.90
2038 2306 0.618393 TCCCTCCGTCCGGGTTTATT 60.618 55.000 0.00 0.00 42.56 1.40
2039 2307 1.002017 TCCCTCCGTCCGGGTTTAT 59.998 57.895 0.00 0.00 42.56 1.40
2040 2308 1.683365 CTCCCTCCGTCCGGGTTTA 60.683 63.158 0.00 0.00 42.56 2.01
2041 2309 2.445492 TACTCCCTCCGTCCGGGTTT 62.445 60.000 0.00 0.00 42.56 3.27
2042 2310 2.850828 CTACTCCCTCCGTCCGGGTT 62.851 65.000 0.00 0.00 42.56 4.11
2043 2311 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
2044 2312 1.987807 TACTACTCCCTCCGTCCGGG 61.988 65.000 0.00 0.00 43.38 5.73
2045 2313 0.107017 TTACTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
2046 2314 1.020437 GTTACTACTCCCTCCGTCCG 58.980 60.000 0.00 0.00 0.00 4.79
2047 2315 2.433662 AGTTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
2048 2316 4.946772 AGTTAAGTTACTACTCCCTCCGTC 59.053 45.833 0.00 0.00 31.99 4.79
2049 2317 4.928263 AGTTAAGTTACTACTCCCTCCGT 58.072 43.478 0.00 0.00 31.99 4.69
2050 2318 5.393896 CCAAGTTAAGTTACTACTCCCTCCG 60.394 48.000 0.00 0.00 31.99 4.63
2051 2319 5.718607 TCCAAGTTAAGTTACTACTCCCTCC 59.281 44.000 0.00 0.00 31.99 4.30
2052 2320 6.847421 TCCAAGTTAAGTTACTACTCCCTC 57.153 41.667 0.00 0.00 31.99 4.30
2053 2321 7.809880 AATCCAAGTTAAGTTACTACTCCCT 57.190 36.000 0.00 0.00 31.99 4.20
2151 2419 0.393808 CACCGGTTCCCATGGGTAAG 60.394 60.000 30.28 17.33 36.47 2.34
2152 2420 1.686416 CACCGGTTCCCATGGGTAA 59.314 57.895 30.28 19.40 36.47 2.85
2291 2565 3.004106 GCATTCAGCATACATGACCTTCC 59.996 47.826 0.00 0.00 44.79 3.46
2350 2624 1.060163 ACACAGCCCAGTGGGTAAGT 61.060 55.000 29.23 20.91 46.51 2.24
2487 2765 1.996191 GGATTCAGCAACGTCTCAGTC 59.004 52.381 0.00 0.00 0.00 3.51
2560 2838 4.675976 TGAAGTTCTTTGGTTCTACGGA 57.324 40.909 4.17 0.00 0.00 4.69
2565 2843 4.141158 AGACCCATGAAGTTCTTTGGTTCT 60.141 41.667 15.15 15.15 0.00 3.01
2697 2975 4.034258 CTGCCACGCCAGTGCTTG 62.034 66.667 0.00 0.00 46.62 4.01
2751 3029 6.252228 CCTTATTACGTACCTCTTGTTTCGTC 59.748 42.308 0.00 0.00 37.45 4.20
2798 3076 4.959839 TGGATACAGTAACTGGTCTGCATA 59.040 41.667 0.00 0.00 46.17 3.14
2799 3077 3.774766 TGGATACAGTAACTGGTCTGCAT 59.225 43.478 0.00 0.00 46.17 3.96
2800 3078 3.169908 TGGATACAGTAACTGGTCTGCA 58.830 45.455 0.00 0.00 46.17 4.41
2835 3113 3.726517 CGGCCTGCAAGACAACGG 61.727 66.667 0.00 0.00 34.07 4.44
2965 3243 4.520111 ACTTACTGATCAAGCAAATGCACA 59.480 37.500 8.28 0.00 45.16 4.57
2997 3275 8.930760 TCAAATTAAACAGAACCAAAACAACTG 58.069 29.630 0.00 0.00 35.14 3.16
3049 3327 5.696724 GGGACTGGACAAAACGATCATATAG 59.303 44.000 0.00 0.00 0.00 1.31
3086 3364 2.886523 CCTCAAGCATTCAGACACCAAA 59.113 45.455 0.00 0.00 0.00 3.28
3102 3380 2.426738 CACCACAAAACAGAAGCCTCAA 59.573 45.455 0.00 0.00 0.00 3.02
3137 3415 9.950680 CTTGTAACTCATCACAGTTTTACATTT 57.049 29.630 0.00 0.00 37.75 2.32
3254 3532 9.456147 TCAATAATAAGAGTTCATTTTCCCGAA 57.544 29.630 0.00 0.00 0.00 4.30
3255 3533 9.627123 ATCAATAATAAGAGTTCATTTTCCCGA 57.373 29.630 0.00 0.00 0.00 5.14
3329 3608 0.466007 ATGGCTGCATGCACCGATTA 60.466 50.000 18.46 7.78 45.15 1.75
3335 3614 0.245539 ACAAAGATGGCTGCATGCAC 59.754 50.000 18.46 13.69 45.15 4.57
3353 3632 8.547967 TGTGAGACCTCTGTGAAATAATTAAC 57.452 34.615 0.00 0.00 0.00 2.01
3368 3647 5.724328 TGATGTATGTTCTTGTGAGACCTC 58.276 41.667 0.00 0.00 0.00 3.85
3481 3760 3.243975 GGTCCCGATACGTTATGTGGATT 60.244 47.826 0.00 0.00 0.00 3.01
3517 3796 3.118775 TGTGATGTGCGCTTTAGATAGGT 60.119 43.478 9.73 0.00 0.00 3.08
3522 3801 1.398041 GCATGTGATGTGCGCTTTAGA 59.602 47.619 9.73 0.00 32.29 2.10
3575 3856 5.190726 TCTCTCTCCTGAAGATGAGTCAGTA 59.809 44.000 0.00 0.00 40.83 2.74
3582 3863 3.485394 CGGATCTCTCTCCTGAAGATGA 58.515 50.000 0.00 0.00 32.19 2.92
3598 3879 2.247437 GGCAAGGACGATGCGGATC 61.247 63.158 6.88 6.88 44.75 3.36
3599 3880 2.203070 GGCAAGGACGATGCGGAT 60.203 61.111 0.00 0.00 44.75 4.18
3685 3969 4.326826 ACAAATCTTCCTGATTCTTCGCA 58.673 39.130 0.00 0.00 43.99 5.10
3723 4007 1.609208 GTTGAGTCATGCCTGGTTGT 58.391 50.000 0.00 0.00 0.00 3.32
3752 4036 1.123077 TCAAGTCATGCCTAGCCGAT 58.877 50.000 0.00 0.00 0.00 4.18
3803 4087 1.229209 GAGGTGGGAGGTGGAGTGA 60.229 63.158 0.00 0.00 0.00 3.41
3854 4138 2.417339 CGGTGTCGTTTCTCTCTTGA 57.583 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.