Multiple sequence alignment - TraesCS1B01G283400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G283400 chr1B 100.000 4853 0 0 1 4853 492331967 492327115 0.000000e+00 8962.0
1 TraesCS1B01G283400 chr1B 83.942 274 38 5 4582 4853 306063384 306063115 1.730000e-64 257.0
2 TraesCS1B01G283400 chr1B 81.319 182 31 1 4071 4252 539148939 539149117 1.410000e-30 145.0
3 TraesCS1B01G283400 chr1B 81.081 185 29 5 4070 4252 156856750 156856930 5.060000e-30 143.0
4 TraesCS1B01G283400 chr1D 90.205 1123 97 10 890 2005 368126871 368125755 0.000000e+00 1452.0
5 TraesCS1B01G283400 chr1D 90.000 1150 59 23 2953 4069 368279338 368278212 0.000000e+00 1435.0
6 TraesCS1B01G283400 chr1D 87.395 1190 133 13 789 1972 368281358 368280180 0.000000e+00 1351.0
7 TraesCS1B01G283400 chr1D 93.304 911 57 3 2942 3852 368117774 368116868 0.000000e+00 1341.0
8 TraesCS1B01G283400 chr1D 88.792 1142 63 34 2946 4069 367916441 367915347 0.000000e+00 1339.0
9 TraesCS1B01G283400 chr1D 86.137 981 121 13 914 1884 367918337 367917362 0.000000e+00 1044.0
10 TraesCS1B01G283400 chr1D 87.186 757 67 16 2112 2842 367917276 367916524 0.000000e+00 833.0
11 TraesCS1B01G283400 chr1D 91.767 498 39 2 304 801 368289798 368289303 0.000000e+00 691.0
12 TraesCS1B01G283400 chr1D 83.180 761 83 24 2112 2838 368280162 368279413 0.000000e+00 654.0
13 TraesCS1B01G283400 chr1D 89.778 450 45 1 2396 2845 368118431 368117983 4.210000e-160 575.0
14 TraesCS1B01G283400 chr1D 87.665 227 27 1 2126 2352 368125759 368125534 3.730000e-66 263.0
15 TraesCS1B01G283400 chr1D 87.665 227 24 1 1 227 368316541 368316319 1.340000e-65 261.0
16 TraesCS1B01G283400 chr1D 85.246 183 27 0 4070 4252 50201352 50201170 6.410000e-44 189.0
17 TraesCS1B01G283400 chr1D 94.737 38 2 0 2782 2819 58519347 58519310 5.250000e-05 60.2
18 TraesCS1B01G283400 chr1D 100.000 29 0 0 1978 2006 368280188 368280160 2.000000e-03 54.7
19 TraesCS1B01G283400 chr1A 90.074 1088 63 22 2925 4000 467192396 467191342 0.000000e+00 1369.0
20 TraesCS1B01G283400 chr1A 86.294 1182 123 22 798 1972 467194357 467193208 0.000000e+00 1249.0
21 TraesCS1B01G283400 chr1A 89.290 803 70 8 1 802 467226053 467225266 0.000000e+00 992.0
22 TraesCS1B01G283400 chr1A 83.286 706 84 17 2163 2836 467193156 467192453 1.920000e-173 619.0
23 TraesCS1B01G283400 chr1A 97.368 114 3 0 2007 2120 502769457 502769344 1.380000e-45 195.0
24 TraesCS1B01G283400 chr1A 97.101 69 2 0 4001 4069 467191256 467191188 3.070000e-22 117.0
25 TraesCS1B01G283400 chr1A 94.737 38 2 0 2782 2819 57211077 57211040 5.250000e-05 60.2
26 TraesCS1B01G283400 chr7D 95.477 796 32 3 1021 1813 521903253 521904047 0.000000e+00 1267.0
27 TraesCS1B01G283400 chr7D 84.615 481 54 10 2112 2572 521904172 521904652 1.230000e-125 460.0
28 TraesCS1B01G283400 chr7D 82.540 441 46 17 2614 3051 521904728 521905140 4.620000e-95 359.0
29 TraesCS1B01G283400 chr7D 97.297 111 3 0 2003 2113 248393402 248393512 6.410000e-44 189.0
30 TraesCS1B01G283400 chr7D 90.909 121 9 1 1888 2006 521904054 521904174 1.400000e-35 161.0
31 TraesCS1B01G283400 chr6A 96.011 727 26 1 1021 1744 93887318 93888044 0.000000e+00 1179.0
32 TraesCS1B01G283400 chr6A 94.737 38 2 0 2782 2819 607805862 607805825 5.250000e-05 60.2
33 TraesCS1B01G283400 chr5A 94.558 735 29 3 1021 1744 549973368 549974102 0.000000e+00 1125.0
34 TraesCS1B01G283400 chr5A 83.812 766 86 22 2112 2839 549974106 549974871 0.000000e+00 693.0
35 TraesCS1B01G283400 chr3B 79.961 514 71 18 4368 4853 199615372 199615881 2.780000e-92 350.0
36 TraesCS1B01G283400 chr3B 79.806 515 71 18 4368 4853 199611379 199611889 1.290000e-90 344.0
37 TraesCS1B01G283400 chr3B 79.727 513 72 17 4368 4853 199555702 199556209 4.650000e-90 342.0
38 TraesCS1B01G283400 chr3B 79.572 514 72 18 4368 4853 199559686 199560194 2.160000e-88 337.0
39 TraesCS1B01G283400 chr3B 85.437 309 39 5 4070 4373 199597127 199597434 2.820000e-82 316.0
40 TraesCS1B01G283400 chr3B 85.161 310 38 7 4070 4373 199552788 199553095 1.310000e-80 311.0
41 TraesCS1B01G283400 chr3B 92.913 127 9 0 2004 2130 592826284 592826158 8.290000e-43 185.0
42 TraesCS1B01G283400 chr2D 83.601 311 34 11 4071 4373 650310449 650310750 4.780000e-70 276.0
43 TraesCS1B01G283400 chr2A 84.861 251 36 2 3518 3767 747382179 747382428 8.060000e-63 252.0
44 TraesCS1B01G283400 chr6D 99.115 113 1 0 2003 2115 63720137 63720249 2.290000e-48 204.0
45 TraesCS1B01G283400 chr3A 97.368 114 3 0 2003 2116 46169211 46169098 1.380000e-45 195.0
46 TraesCS1B01G283400 chr3A 97.297 111 3 0 2004 2114 182618995 182619105 6.410000e-44 189.0
47 TraesCS1B01G283400 chr7A 93.023 129 8 1 2007 2134 381253923 381254051 2.310000e-43 187.0
48 TraesCS1B01G283400 chrUn 94.309 123 3 4 1994 2114 352766996 352766876 8.290000e-43 185.0
49 TraesCS1B01G283400 chrUn 93.966 116 7 0 2004 2119 27987410 27987525 4.990000e-40 176.0
50 TraesCS1B01G283400 chr2B 82.778 180 24 5 4070 4247 51188119 51187945 2.340000e-33 154.0
51 TraesCS1B01G283400 chr2B 90.909 77 7 0 3057 3133 752854079 752854003 2.390000e-18 104.0
52 TraesCS1B01G283400 chr4B 83.333 168 25 3 4081 4247 207429401 207429236 8.410000e-33 152.0
53 TraesCS1B01G283400 chr4B 81.461 178 31 2 4075 4251 126972435 126972259 1.410000e-30 145.0
54 TraesCS1B01G283400 chr3D 78.469 209 45 0 58 266 541629787 541629579 2.360000e-28 137.0
55 TraesCS1B01G283400 chr4A 77.119 236 46 8 133 365 158797196 158797426 3.940000e-26 130.0
56 TraesCS1B01G283400 chr7B 75.000 244 49 9 24 262 125393951 125394187 8.590000e-18 102.0
57 TraesCS1B01G283400 chr5B 80.357 112 20 2 138 248 111904291 111904401 3.110000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G283400 chr1B 492327115 492331967 4852 True 8962.000 8962 100.000000 1 4853 1 chr1B.!!$R2 4852
1 TraesCS1B01G283400 chr1D 367915347 367918337 2990 True 1072.000 1339 87.371667 914 4069 3 chr1D.!!$R5 3155
2 TraesCS1B01G283400 chr1D 368116868 368118431 1563 True 958.000 1341 91.541000 2396 3852 2 chr1D.!!$R6 1456
3 TraesCS1B01G283400 chr1D 368278212 368281358 3146 True 873.675 1435 90.143750 789 4069 4 chr1D.!!$R8 3280
4 TraesCS1B01G283400 chr1D 368125534 368126871 1337 True 857.500 1452 88.935000 890 2352 2 chr1D.!!$R7 1462
5 TraesCS1B01G283400 chr1A 467225266 467226053 787 True 992.000 992 89.290000 1 802 1 chr1A.!!$R2 801
6 TraesCS1B01G283400 chr1A 467191188 467194357 3169 True 838.500 1369 89.188750 798 4069 4 chr1A.!!$R4 3271
7 TraesCS1B01G283400 chr7D 521903253 521905140 1887 False 561.750 1267 88.385250 1021 3051 4 chr7D.!!$F2 2030
8 TraesCS1B01G283400 chr6A 93887318 93888044 726 False 1179.000 1179 96.011000 1021 1744 1 chr6A.!!$F1 723
9 TraesCS1B01G283400 chr5A 549973368 549974871 1503 False 909.000 1125 89.185000 1021 2839 2 chr5A.!!$F1 1818
10 TraesCS1B01G283400 chr3B 199611379 199615881 4502 False 347.000 350 79.883500 4368 4853 2 chr3B.!!$F3 485
11 TraesCS1B01G283400 chr3B 199552788 199560194 7406 False 330.000 342 81.486667 4070 4853 3 chr3B.!!$F2 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 530 0.023354 CCGAAGTCGACGCGATTTTC 59.977 55.0 27.39 16.26 43.02 2.29 F
858 860 0.378962 ATAGTCTCAGTCTCGCGTGC 59.621 55.0 5.77 0.00 0.00 5.34 F
2232 2276 0.530744 CCCTGTTCGTCTCGATTCCA 59.469 55.0 0.00 0.00 35.23 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 1910 0.035056 GGCCACAAGTATCAGCCAGT 60.035 55.0 0.00 0.00 43.32 4.00 R
2315 2359 0.742990 CTCACCGGCGCTGGATAAAA 60.743 55.0 41.14 18.84 0.00 1.52 R
3922 4187 0.108804 AACACATCGCCTAGTCCACG 60.109 55.0 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.840005 TCGCACCAACGCACACCA 62.840 61.111 0.00 0.00 0.00 4.17
23 24 4.605967 CGCACCAACGCACACCAC 62.606 66.667 0.00 0.00 0.00 4.16
25 26 4.605967 CACCAACGCACACCACGC 62.606 66.667 0.00 0.00 0.00 5.34
54 55 0.462759 GCCTCACTAAGCCGCTCAAT 60.463 55.000 0.00 0.00 0.00 2.57
56 57 1.134699 CCTCACTAAGCCGCTCAATGA 60.135 52.381 0.00 0.00 0.00 2.57
57 58 1.929836 CTCACTAAGCCGCTCAATGAC 59.070 52.381 0.00 0.00 0.00 3.06
100 101 0.251165 ACCAAACCCTTAGCACGCAT 60.251 50.000 0.00 0.00 0.00 4.73
102 103 0.171007 CAAACCCTTAGCACGCATGG 59.829 55.000 0.00 0.00 0.00 3.66
125 126 4.026475 GTGTTCACACGCTCTAGAATATGC 60.026 45.833 0.00 0.00 37.10 3.14
138 139 7.095691 GCTCTAGAATATGCTGTTGTCATCTTC 60.096 40.741 0.00 0.00 31.29 2.87
143 144 0.716108 GCTGTTGTCATCTTCCGTCG 59.284 55.000 0.00 0.00 0.00 5.12
156 157 1.108776 TCCGTCGTCCCATCTTTAGG 58.891 55.000 0.00 0.00 0.00 2.69
217 218 0.535335 ACGCCACCACGTCAATAGAT 59.465 50.000 0.00 0.00 44.43 1.98
238 239 2.890474 GCCACCATCCTACACGCG 60.890 66.667 3.53 3.53 0.00 6.01
272 273 1.079127 CCAACGCCGAGACTCCATT 60.079 57.895 0.00 0.00 0.00 3.16
273 274 1.361668 CCAACGCCGAGACTCCATTG 61.362 60.000 0.00 0.00 0.00 2.82
274 275 1.741770 AACGCCGAGACTCCATTGC 60.742 57.895 0.00 0.00 0.00 3.56
279 280 1.522355 CGAGACTCCATTGCGCCAT 60.522 57.895 4.18 0.00 0.00 4.40
281 282 2.056481 GAGACTCCATTGCGCCATGC 62.056 60.000 15.68 2.58 46.70 4.06
282 283 3.129913 GACTCCATTGCGCCATGCC 62.130 63.158 15.68 1.54 45.60 4.40
316 317 2.009774 ACTGTTGATGCGGTAAGATGC 58.990 47.619 0.00 0.00 0.00 3.91
328 329 1.258982 GTAAGATGCAACATCGCTCCG 59.741 52.381 0.00 0.00 0.00 4.63
336 337 3.267860 CATCGCTCCGCCTCTTGC 61.268 66.667 0.00 0.00 0.00 4.01
355 356 2.047844 CCCTCGTGTCAGCACCTG 60.048 66.667 0.00 0.00 42.39 4.00
366 367 2.165437 GTCAGCACCTGTTCCAAAACAA 59.835 45.455 0.00 0.00 44.53 2.83
373 374 0.761802 TGTTCCAAAACAATGCCCCC 59.238 50.000 0.00 0.00 42.34 5.40
376 377 0.189574 TCCAAAACAATGCCCCCAGA 59.810 50.000 0.00 0.00 0.00 3.86
408 410 1.156736 CCGAAGGCTTTGTCATCGTT 58.843 50.000 13.34 0.00 46.14 3.85
416 418 1.588404 CTTTGTCATCGTTCGATCCGG 59.412 52.381 4.67 0.00 0.00 5.14
417 419 0.179121 TTGTCATCGTTCGATCCGGG 60.179 55.000 0.00 0.00 0.00 5.73
421 423 0.384309 CATCGTTCGATCCGGGAGAA 59.616 55.000 0.00 1.98 0.00 2.87
442 444 4.871871 ACCAGATCTAGAGTTCTCCTCA 57.128 45.455 0.00 0.00 43.12 3.86
451 453 2.765699 AGAGTTCTCCTCAGAGCATTCC 59.234 50.000 0.00 0.00 43.12 3.01
460 462 4.918201 GAGCATTCCGAGCGGGGG 62.918 72.222 9.29 0.40 37.01 5.40
476 478 3.050275 GGGACGCAGACTGCCAAC 61.050 66.667 21.55 12.31 41.12 3.77
485 487 1.862201 CAGACTGCCAACGACGTTAAA 59.138 47.619 13.77 1.07 0.00 1.52
487 489 0.584876 ACTGCCAACGACGTTAAAGC 59.415 50.000 13.77 16.23 0.00 3.51
489 491 1.154543 GCCAACGACGTTAAAGCCG 60.155 57.895 13.77 0.00 0.00 5.52
524 526 2.099831 GACCGAAGTCGACGCGAT 59.900 61.111 27.39 16.25 43.02 4.58
525 527 1.513586 GACCGAAGTCGACGCGATT 60.514 57.895 27.39 17.20 43.02 3.34
526 528 1.069378 GACCGAAGTCGACGCGATTT 61.069 55.000 27.39 10.56 43.02 2.17
527 529 0.665369 ACCGAAGTCGACGCGATTTT 60.665 50.000 27.39 9.88 43.02 1.82
528 530 0.023354 CCGAAGTCGACGCGATTTTC 59.977 55.000 27.39 16.26 43.02 2.29
529 531 0.706184 CGAAGTCGACGCGATTTTCA 59.294 50.000 23.33 0.00 43.02 2.69
530 532 1.265923 CGAAGTCGACGCGATTTTCAG 60.266 52.381 23.33 8.52 43.02 3.02
531 533 0.438830 AAGTCGACGCGATTTTCAGC 59.561 50.000 15.93 0.00 38.42 4.26
549 551 3.986006 GACAGACGCGTCACCCCA 61.986 66.667 37.85 0.00 35.88 4.96
567 569 2.766925 AACCCTGCAGCTGGTTCCA 61.767 57.895 18.53 3.54 40.87 3.53
570 572 1.303888 CCTGCAGCTGGTTCCACAT 60.304 57.895 17.12 0.00 0.00 3.21
572 574 1.642037 CTGCAGCTGGTTCCACATCG 61.642 60.000 17.12 0.00 0.00 3.84
618 620 3.717294 GAGGACCACCACGCCCAT 61.717 66.667 0.00 0.00 38.94 4.00
706 708 6.823689 AGAACAGAGGTTATAAATGTCGCAAT 59.176 34.615 0.00 0.00 37.36 3.56
739 741 7.067116 GCATATATGTGAAAAATGTTGCATGC 58.933 34.615 11.82 11.82 0.00 4.06
744 746 3.247173 GTGAAAAATGTTGCATGCGGAAA 59.753 39.130 14.09 0.00 0.00 3.13
776 778 0.689623 GCCATGAGGGATCGGAGATT 59.310 55.000 0.00 0.00 38.32 2.40
808 810 3.181454 ACAAGAAATGTTCGGTGAGAGGT 60.181 43.478 2.88 0.00 40.06 3.85
853 855 3.001838 CGTGAGGAATAGTCTCAGTCTCG 59.998 52.174 0.00 0.00 41.32 4.04
855 857 1.944024 AGGAATAGTCTCAGTCTCGCG 59.056 52.381 0.00 0.00 0.00 5.87
856 858 1.671845 GGAATAGTCTCAGTCTCGCGT 59.328 52.381 5.77 0.00 0.00 6.01
857 859 2.539953 GGAATAGTCTCAGTCTCGCGTG 60.540 54.545 5.77 3.13 0.00 5.34
858 860 0.378962 ATAGTCTCAGTCTCGCGTGC 59.621 55.000 5.77 0.00 0.00 5.34
859 861 1.967597 TAGTCTCAGTCTCGCGTGCG 61.968 60.000 5.77 8.14 41.35 5.34
860 862 3.047877 TCTCAGTCTCGCGTGCGA 61.048 61.111 16.78 16.78 46.87 5.10
1050 1060 2.175202 CTGAGCCCACTGTACTCTCTT 58.825 52.381 0.00 0.00 0.00 2.85
1157 1178 3.691342 CCAGGCCAACCTCGACGA 61.691 66.667 5.01 0.00 46.34 4.20
1223 1244 2.738521 CGAGAACACCACCGGCAG 60.739 66.667 0.00 0.00 0.00 4.85
1226 1247 1.816863 GAGAACACCACCGGCAGAGA 61.817 60.000 0.00 0.00 0.00 3.10
1362 1383 1.531423 AGTCCACGCTCTTCTACGAA 58.469 50.000 0.00 0.00 0.00 3.85
1828 1859 2.432456 CTGCAGAACGCGCTGGTA 60.432 61.111 8.42 0.00 46.97 3.25
1861 1894 2.608546 CCGTCAACTTTGTTGTCCGTAA 59.391 45.455 9.78 0.00 0.00 3.18
1877 1910 1.980844 CGTAAGCTCACGCGTTTCTAA 59.019 47.619 10.22 0.00 42.32 2.10
1886 1919 1.337823 ACGCGTTTCTAACTGGCTGAT 60.338 47.619 5.58 0.00 0.00 2.90
1945 1978 3.303066 CGTGTCAATCTTGCGTCTTTGAA 60.303 43.478 0.00 0.00 30.51 2.69
2006 2041 2.505405 TCAGACAGCGACTGAACTAGT 58.495 47.619 12.77 0.00 44.02 2.57
2007 2042 3.671716 TCAGACAGCGACTGAACTAGTA 58.328 45.455 12.77 0.00 40.53 1.82
2008 2043 3.436015 TCAGACAGCGACTGAACTAGTAC 59.564 47.826 12.77 0.00 40.53 2.73
2009 2044 3.437395 CAGACAGCGACTGAACTAGTACT 59.563 47.826 12.77 0.00 40.53 2.73
2010 2045 3.685756 AGACAGCGACTGAACTAGTACTC 59.314 47.826 12.77 0.00 40.53 2.59
2011 2046 2.748532 ACAGCGACTGAACTAGTACTCC 59.251 50.000 12.77 0.00 40.53 3.85
2012 2047 2.097791 CAGCGACTGAACTAGTACTCCC 59.902 54.545 0.00 0.00 40.53 4.30
2013 2048 2.026075 AGCGACTGAACTAGTACTCCCT 60.026 50.000 0.00 0.00 40.53 4.20
2014 2049 2.355444 GCGACTGAACTAGTACTCCCTC 59.645 54.545 0.00 0.00 40.53 4.30
2015 2050 2.944349 CGACTGAACTAGTACTCCCTCC 59.056 54.545 0.00 0.00 40.53 4.30
2016 2051 2.944349 GACTGAACTAGTACTCCCTCCG 59.056 54.545 0.00 0.00 40.53 4.63
2017 2052 2.308275 ACTGAACTAGTACTCCCTCCGT 59.692 50.000 0.00 0.00 38.04 4.69
2018 2053 3.245193 ACTGAACTAGTACTCCCTCCGTT 60.245 47.826 0.00 0.00 38.04 4.44
2019 2054 3.350833 TGAACTAGTACTCCCTCCGTTC 58.649 50.000 0.00 5.12 0.00 3.95
2020 2055 2.433662 ACTAGTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
2021 2056 1.637553 ACTAGTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
2022 2057 2.042162 ACTAGTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
2023 2058 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2024 2059 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2025 2060 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2026 2061 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2027 2062 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2028 2063 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2029 2064 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2030 2065 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2031 2066 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2032 2067 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2033 2068 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2034 2069 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2035 2070 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2036 2071 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2037 2072 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2038 2073 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2039 2074 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2040 2075 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2041 2076 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2042 2077 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2043 2078 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2044 2079 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2045 2080 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2046 2081 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2047 2082 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2048 2083 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2049 2084 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2050 2085 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2051 2086 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2052 2087 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2053 2088 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2054 2089 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2055 2090 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2056 2091 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2057 2092 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2058 2093 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2059 2094 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2087 2122 8.712228 ACATCTAGATACATCCATACTTGTGA 57.288 34.615 4.54 0.00 0.00 3.58
2088 2123 8.580720 ACATCTAGATACATCCATACTTGTGAC 58.419 37.037 4.54 0.00 0.00 3.67
2089 2124 8.579863 CATCTAGATACATCCATACTTGTGACA 58.420 37.037 4.54 0.00 0.00 3.58
2090 2125 8.533569 TCTAGATACATCCATACTTGTGACAA 57.466 34.615 0.00 0.00 0.00 3.18
2091 2126 8.633561 TCTAGATACATCCATACTTGTGACAAG 58.366 37.037 22.73 22.73 0.00 3.16
2092 2127 7.187824 AGATACATCCATACTTGTGACAAGT 57.812 36.000 30.73 30.73 0.00 3.16
2093 2128 8.306313 AGATACATCCATACTTGTGACAAGTA 57.694 34.615 32.63 32.63 37.18 2.24
2094 2129 8.758829 AGATACATCCATACTTGTGACAAGTAA 58.241 33.333 33.69 21.95 36.45 2.24
2095 2130 9.547753 GATACATCCATACTTGTGACAAGTAAT 57.452 33.333 33.69 23.14 36.45 1.89
2096 2131 9.905713 ATACATCCATACTTGTGACAAGTAATT 57.094 29.630 33.69 20.38 36.45 1.40
2097 2132 8.268850 ACATCCATACTTGTGACAAGTAATTC 57.731 34.615 33.69 0.00 36.45 2.17
2098 2133 6.961359 TCCATACTTGTGACAAGTAATTCG 57.039 37.500 33.69 23.26 36.45 3.34
2099 2134 5.872617 TCCATACTTGTGACAAGTAATTCGG 59.127 40.000 33.69 28.68 36.45 4.30
2100 2135 5.872617 CCATACTTGTGACAAGTAATTCGGA 59.127 40.000 33.69 17.46 36.45 4.55
2101 2136 6.370442 CCATACTTGTGACAAGTAATTCGGAA 59.630 38.462 33.69 16.81 36.45 4.30
2102 2137 5.668558 ACTTGTGACAAGTAATTCGGAAC 57.331 39.130 27.82 0.00 0.00 3.62
2103 2138 5.403166 TACTTGTGACAAGTAATTCGGAACG 59.597 40.000 29.84 3.58 40.66 3.95
2104 2139 6.735419 TACTTGTGACAAGTAATTCGGAACGA 60.735 38.462 29.84 9.87 43.82 3.85
2158 2193 1.338107 TCCTTTTGACTGAGAGCGGA 58.662 50.000 0.00 0.00 0.00 5.54
2214 2258 2.182842 CGCCACAGCCAAGATAGCC 61.183 63.158 0.00 0.00 34.57 3.93
2226 2270 1.025812 AGATAGCCCTGTTCGTCTCG 58.974 55.000 0.00 0.00 0.00 4.04
2232 2276 0.530744 CCCTGTTCGTCTCGATTCCA 59.469 55.000 0.00 0.00 35.23 3.53
2240 2284 0.723981 GTCTCGATTCCAGTTGCTGC 59.276 55.000 0.00 0.00 0.00 5.25
2254 2298 3.663176 CTGCCGTGCTGTTGGTGG 61.663 66.667 0.00 0.00 0.00 4.61
2271 2315 2.479560 GGTGGTGTTGACAGTTGCTTTC 60.480 50.000 0.00 0.00 0.00 2.62
2277 2321 5.334414 GGTGTTGACAGTTGCTTTCTATCTG 60.334 44.000 0.00 0.00 0.00 2.90
2303 2347 3.467803 AGAGGAAGAACAAGAAACCACG 58.532 45.455 0.00 0.00 0.00 4.94
2315 2359 1.444119 AAACCACGCGAACATGTGCT 61.444 50.000 15.93 0.00 34.77 4.40
2316 2360 1.444119 AACCACGCGAACATGTGCTT 61.444 50.000 15.93 0.00 34.77 3.91
2317 2361 1.282570 CCACGCGAACATGTGCTTT 59.717 52.632 15.93 0.00 34.77 3.51
2352 2396 3.994392 GTGAGTGCTTCTTGGTCGATTAA 59.006 43.478 0.00 0.00 0.00 1.40
2356 2400 7.011482 GTGAGTGCTTCTTGGTCGATTAATTAT 59.989 37.037 0.00 0.00 0.00 1.28
2357 2401 8.201464 TGAGTGCTTCTTGGTCGATTAATTATA 58.799 33.333 0.00 0.00 0.00 0.98
2358 2402 9.209175 GAGTGCTTCTTGGTCGATTAATTATAT 57.791 33.333 0.00 0.00 0.00 0.86
2359 2403 9.561069 AGTGCTTCTTGGTCGATTAATTATATT 57.439 29.630 0.00 0.00 0.00 1.28
2425 2498 3.054065 TCTGTGAGCAGAGAGTGAGGATA 60.054 47.826 0.00 0.00 45.94 2.59
2499 2573 0.951040 CGGCCACTGACAACTTCTCC 60.951 60.000 2.24 0.00 0.00 3.71
2555 2630 4.032104 GCCGGTCTACAAAGTAATAACACG 59.968 45.833 1.90 0.00 0.00 4.49
2560 2635 6.091305 GGTCTACAAAGTAATAACACGGAACC 59.909 42.308 0.00 0.00 0.00 3.62
2582 2668 7.410120 ACCTGGAACATGAGAAATTAATTCC 57.590 36.000 0.00 0.00 36.72 3.01
2593 2683 5.816682 AGAAATTAATTCCTCCGTTCCTGT 58.183 37.500 0.10 0.00 38.94 4.00
2596 2686 5.687166 ATTAATTCCTCCGTTCCTGTACA 57.313 39.130 0.00 0.00 0.00 2.90
2615 2721 5.636121 TGTACATAACAATCGACTTGGTGTC 59.364 40.000 7.97 0.00 39.30 3.67
2842 2964 1.947456 GATTCTATTCGGTTGGTGCCC 59.053 52.381 0.00 0.00 0.00 5.36
2845 2967 1.074084 TCTATTCGGTTGGTGCCCAAA 59.926 47.619 8.06 0.00 45.73 3.28
2846 2968 1.201414 CTATTCGGTTGGTGCCCAAAC 59.799 52.381 10.93 10.93 45.73 2.93
2857 2995 6.460953 GGTTGGTGCCCAAACTGTTATATATG 60.461 42.308 13.08 0.00 46.75 1.78
2859 2997 5.825679 TGGTGCCCAAACTGTTATATATGTC 59.174 40.000 0.00 0.00 0.00 3.06
2890 3028 4.153117 GCGACATTCAGTTTCAAGTCATCT 59.847 41.667 0.00 0.00 0.00 2.90
2896 3034 5.447624 TCAGTTTCAAGTCATCTCGTACA 57.552 39.130 0.00 0.00 0.00 2.90
2899 3084 7.251281 TCAGTTTCAAGTCATCTCGTACATAG 58.749 38.462 0.00 0.00 0.00 2.23
2903 3088 9.011407 GTTTCAAGTCATCTCGTACATAGTAAG 57.989 37.037 0.00 0.00 0.00 2.34
2905 3090 7.694886 TCAAGTCATCTCGTACATAGTAAGTG 58.305 38.462 0.00 0.00 0.00 3.16
2918 3103 5.117592 ACATAGTAAGTGTACGTGTTTTCGC 59.882 40.000 0.00 0.00 33.12 4.70
2922 3107 2.273557 AGTGTACGTGTTTTCGCACTT 58.726 42.857 0.00 0.00 37.24 3.16
2989 3226 2.349755 GAGCTTACGTGGGGGCAA 59.650 61.111 0.00 0.00 0.00 4.52
3046 3283 5.372373 CTCCTTTACCTCCATGAAGATTCC 58.628 45.833 0.00 0.00 0.00 3.01
3052 3289 2.707791 CCTCCATGAAGATTCCAGGCTA 59.292 50.000 0.00 0.00 0.00 3.93
3124 3361 1.879575 TGAACCCCAAGATCTCCGAT 58.120 50.000 0.00 0.00 0.00 4.18
3238 3475 7.413988 CGAACAGCAATAAGTAATTCATGGTGA 60.414 37.037 20.01 0.00 39.03 4.02
3245 3482 9.040939 CAATAAGTAATTCATGGTGATGTACGA 57.959 33.333 0.00 0.00 0.00 3.43
3249 3486 6.980978 AGTAATTCATGGTGATGTACGAGAAG 59.019 38.462 0.00 0.00 0.00 2.85
3253 3490 0.454600 GGTGATGTACGAGAAGCCGA 59.545 55.000 0.00 0.00 0.00 5.54
3280 3521 0.028110 GCTAGCTAACAATGCGGTGC 59.972 55.000 7.70 0.00 35.28 5.01
3309 3550 0.039472 AATGCAGTGGGTACATGGCA 59.961 50.000 0.00 0.00 40.90 4.92
3414 3655 1.010419 GCCGCAACAATTTCAGCCAG 61.010 55.000 0.00 0.00 0.00 4.85
3474 3730 1.369091 GGGTGTGACCGTGATCATGC 61.369 60.000 9.58 0.00 39.83 4.06
3488 3744 3.324556 TGATCATGCCGGATCAGTCAATA 59.675 43.478 5.05 0.00 46.46 1.90
3506 3771 9.224267 CAGTCAATATAACTGGCTAATTATGCT 57.776 33.333 9.35 0.00 40.36 3.79
3843 4108 0.685097 CCTCCGTTTCTGACCTGGAA 59.315 55.000 0.00 0.00 0.00 3.53
3881 4146 3.444034 GGCCTGAAAAATAGGGTGTTCTC 59.556 47.826 0.00 0.00 35.80 2.87
3922 4187 1.405105 TCCAAACTTTCAGCAGTGTGC 59.595 47.619 0.00 0.00 45.46 4.57
3931 4196 3.862124 GCAGTGTGCGTGGACTAG 58.138 61.111 0.00 0.00 31.71 2.57
3932 4197 1.738099 GCAGTGTGCGTGGACTAGG 60.738 63.158 0.00 0.00 31.71 3.02
3933 4198 1.738099 CAGTGTGCGTGGACTAGGC 60.738 63.158 0.00 0.00 40.51 3.93
3935 4200 2.986979 TGTGCGTGGACTAGGCGA 60.987 61.111 0.00 0.00 42.95 5.54
3944 4216 3.592059 GTGGACTAGGCGATGTGTTAAA 58.408 45.455 0.00 0.00 0.00 1.52
3954 4226 6.483687 AGGCGATGTGTTAAATCGTTTATTC 58.516 36.000 9.18 0.00 46.70 1.75
4058 4426 7.345691 TGGTGTAATCATTGATATGGTCACTT 58.654 34.615 0.00 0.00 36.32 3.16
4070 4438 9.443323 TTGATATGGTCACTTATTCTTTTTCGA 57.557 29.630 0.00 0.00 36.32 3.71
4071 4439 9.443323 TGATATGGTCACTTATTCTTTTTCGAA 57.557 29.630 0.00 0.00 0.00 3.71
4217 4585 5.527214 TCCATCTAATGATGTTAAACGGCAG 59.473 40.000 5.48 0.00 46.38 4.85
4219 4587 6.205464 CCATCTAATGATGTTAAACGGCAGAT 59.795 38.462 5.48 0.00 46.38 2.90
4220 4588 7.387673 CCATCTAATGATGTTAAACGGCAGATA 59.612 37.037 5.48 0.00 46.38 1.98
4221 4589 7.946655 TCTAATGATGTTAAACGGCAGATAG 57.053 36.000 0.00 0.00 0.00 2.08
4224 4592 6.851222 ATGATGTTAAACGGCAGATAGAAG 57.149 37.500 0.00 0.00 0.00 2.85
4238 4606 6.122964 GCAGATAGAAGGACATTTTTACCCT 58.877 40.000 0.00 0.00 0.00 4.34
4241 4609 7.829211 CAGATAGAAGGACATTTTTACCCTTGA 59.171 37.037 0.00 0.00 38.97 3.02
4254 4622 7.817418 TTTTACCCTTGATGTAATATGAGCC 57.183 36.000 0.00 0.00 0.00 4.70
4257 4625 3.244561 CCCTTGATGTAATATGAGCCGGT 60.245 47.826 1.90 0.00 0.00 5.28
4264 4632 3.641436 TGTAATATGAGCCGGTCATCTGT 59.359 43.478 16.19 6.16 42.80 3.41
4265 4633 3.845781 AATATGAGCCGGTCATCTGTT 57.154 42.857 16.19 7.87 42.80 3.16
4272 4640 1.238439 CCGGTCATCTGTTGCAAGTT 58.762 50.000 0.00 0.00 0.00 2.66
4281 4649 2.203337 TTGCAAGTTGCCCGCTCT 60.203 55.556 24.59 0.00 44.23 4.09
4283 4651 3.435186 GCAAGTTGCCCGCTCTCC 61.435 66.667 17.36 0.00 37.42 3.71
4287 4655 2.579684 AAGTTGCCCGCTCTCCGATC 62.580 60.000 0.00 0.00 40.02 3.69
4304 4672 2.776370 ATCCATGCATCCATCCCCGC 62.776 60.000 0.00 0.00 0.00 6.13
4326 4699 0.801067 CTACTAAGCACGACACGCCC 60.801 60.000 0.00 0.00 0.00 6.13
4357 4730 1.167851 GCATTGGCTCAACAGCTACA 58.832 50.000 0.00 0.00 46.03 2.74
4360 4733 2.340210 TTGGCTCAACAGCTACACAA 57.660 45.000 0.00 0.00 46.03 3.33
4363 4736 1.593196 GCTCAACAGCTACACAACCA 58.407 50.000 0.00 0.00 43.09 3.67
4370 7355 0.665369 AGCTACACAACCACGTACGC 60.665 55.000 16.72 0.00 0.00 4.42
4380 7365 1.349259 CCACGTACGCACTAACCAGC 61.349 60.000 16.72 0.00 0.00 4.85
4383 7368 0.388134 CGTACGCACTAACCAGCTGT 60.388 55.000 13.81 0.00 0.00 4.40
4384 7369 1.068474 GTACGCACTAACCAGCTGTG 58.932 55.000 13.81 4.85 35.08 3.66
4391 7376 1.542030 ACTAACCAGCTGTGTCTCTCG 59.458 52.381 13.81 0.00 0.00 4.04
4395 7380 0.034059 CCAGCTGTGTCTCTCGGTTT 59.966 55.000 13.81 0.00 0.00 3.27
4398 7383 1.412710 AGCTGTGTCTCTCGGTTTCAA 59.587 47.619 0.00 0.00 0.00 2.69
4441 7426 1.891919 GGTTTGGCTGCACGAGTCA 60.892 57.895 0.50 0.00 33.14 3.41
4445 7430 2.433318 GGCTGCACGAGTCACCTC 60.433 66.667 0.50 0.00 0.00 3.85
4498 7510 3.261951 CGTTACGCGCATCCTGGG 61.262 66.667 5.73 0.00 0.00 4.45
4512 7524 0.835941 CCTGGGCAGAGAGCTTGTAT 59.164 55.000 0.00 0.00 44.79 2.29
4517 7529 1.124462 GCAGAGAGCTTGTATACGCG 58.876 55.000 3.53 3.53 41.15 6.01
4529 7541 4.158020 TGTATACGCGTGTACACAAGAA 57.842 40.909 35.36 18.24 35.15 2.52
4534 7546 2.291465 ACGCGTGTACACAAGAACTAGA 59.709 45.455 24.98 0.00 0.00 2.43
4548 7560 8.386606 CACAAGAACTAGAATAAGCACTTGATC 58.613 37.037 0.00 0.00 36.89 2.92
4551 7563 9.678260 AAGAACTAGAATAAGCACTTGATCAAT 57.322 29.630 8.96 0.00 0.00 2.57
4552 7564 9.678260 AGAACTAGAATAAGCACTTGATCAATT 57.322 29.630 8.96 0.00 0.00 2.32
4576 7588 0.887387 TTGGAACTTGGCTACGCACC 60.887 55.000 0.00 0.00 0.00 5.01
4577 7589 1.003718 GGAACTTGGCTACGCACCT 60.004 57.895 0.00 0.00 0.00 4.00
4584 7596 1.218316 GGCTACGCACCTAGCAACT 59.782 57.895 5.29 0.00 46.13 3.16
4592 7604 1.609841 GCACCTAGCAACTAAACCGGT 60.610 52.381 0.00 0.00 44.79 5.28
4595 7607 2.028385 ACCTAGCAACTAAACCGGTCAG 60.028 50.000 8.04 11.40 0.00 3.51
4599 7611 3.858247 AGCAACTAAACCGGTCAGATAC 58.142 45.455 19.99 5.99 0.00 2.24
4610 7622 1.667724 GGTCAGATACACACATGCAGC 59.332 52.381 0.00 0.00 0.00 5.25
4625 7637 3.782632 CAGCCAGAGATCTGCATGT 57.217 52.632 0.00 0.00 42.47 3.21
4639 7651 2.230025 CTGCATGTAGCTACTCGGCTAT 59.770 50.000 23.84 5.91 44.98 2.97
4640 7652 3.418047 TGCATGTAGCTACTCGGCTATA 58.582 45.455 23.84 2.09 44.98 1.31
4648 7660 2.771089 CTACTCGGCTATACGTACCCA 58.229 52.381 0.00 0.00 34.94 4.51
4649 7661 1.312815 ACTCGGCTATACGTACCCAC 58.687 55.000 0.00 0.00 34.94 4.61
4652 7664 3.076621 CTCGGCTATACGTACCCACATA 58.923 50.000 0.00 0.00 34.94 2.29
4666 7678 2.627699 CCCACATACAACAAACCAAGCT 59.372 45.455 0.00 0.00 0.00 3.74
4667 7679 3.823873 CCCACATACAACAAACCAAGCTA 59.176 43.478 0.00 0.00 0.00 3.32
4669 7681 4.475944 CACATACAACAAACCAAGCTAGC 58.524 43.478 6.62 6.62 0.00 3.42
4670 7682 3.506067 ACATACAACAAACCAAGCTAGCC 59.494 43.478 12.13 0.00 0.00 3.93
4677 7689 0.321653 AACCAAGCTAGCCGGACAAG 60.322 55.000 23.96 0.00 0.00 3.16
4679 7691 1.021390 CCAAGCTAGCCGGACAAGTG 61.021 60.000 12.13 0.00 0.00 3.16
4682 7694 0.037232 AGCTAGCCGGACAAGTGTTC 60.037 55.000 12.13 0.00 0.00 3.18
4691 7703 3.753272 CCGGACAAGTGTTCTTTCATCAT 59.247 43.478 0.00 0.00 0.00 2.45
4717 7729 9.781834 TTAGCATTTATTAGAATTTTGGTCACG 57.218 29.630 0.00 0.00 0.00 4.35
4720 7732 9.006215 GCATTTATTAGAATTTTGGTCACGTAC 57.994 33.333 0.00 0.00 0.00 3.67
4737 7749 3.020984 CGTACCACATAAGGGGCAAAAT 58.979 45.455 0.00 0.00 0.00 1.82
4738 7750 4.200874 CGTACCACATAAGGGGCAAAATA 58.799 43.478 0.00 0.00 0.00 1.40
4750 7762 5.086621 AGGGGCAAAATAGTCTTTTCATGT 58.913 37.500 0.00 0.00 0.00 3.21
4751 7763 6.252995 AGGGGCAAAATAGTCTTTTCATGTA 58.747 36.000 0.00 0.00 0.00 2.29
4764 7776 8.739972 AGTCTTTTCATGTATCATTTAACACCC 58.260 33.333 0.00 0.00 0.00 4.61
4767 7779 9.573133 CTTTTCATGTATCATTTAACACCCTTC 57.427 33.333 0.00 0.00 0.00 3.46
4769 7781 7.864108 TCATGTATCATTTAACACCCTTCAG 57.136 36.000 0.00 0.00 0.00 3.02
4772 7784 3.517296 TCATTTAACACCCTTCAGGCA 57.483 42.857 0.00 0.00 40.58 4.75
4780 7792 4.046286 ACACCCTTCAGGCATAAAATGA 57.954 40.909 0.00 0.00 40.58 2.57
4791 7803 7.315142 TCAGGCATAAAATGAATGAAAGTGTC 58.685 34.615 0.00 0.00 0.00 3.67
4793 7805 7.062605 CAGGCATAAAATGAATGAAAGTGTCAC 59.937 37.037 0.00 0.00 39.72 3.67
4814 7826 7.593273 TGTCACAAAAGGCATAAAATTTAGACG 59.407 33.333 0.00 0.00 0.00 4.18
4838 7852 6.036083 CGTAGTGTCACATAGGGAAGAAATTG 59.964 42.308 5.62 0.00 0.00 2.32
4839 7853 5.880901 AGTGTCACATAGGGAAGAAATTGT 58.119 37.500 5.62 0.00 0.00 2.71
4848 7862 8.028938 ACATAGGGAAGAAATTGTTTTTCGATG 58.971 33.333 0.00 0.00 33.86 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.192954 ATTGCGTGGTGTGCGTTGG 62.193 57.895 0.00 0.00 34.24 3.77
22 23 2.045926 GAGGCCACCAGATTGCGT 60.046 61.111 5.01 0.00 0.00 5.24
23 24 2.046023 TGAGGCCACCAGATTGCG 60.046 61.111 5.01 0.00 0.00 4.85
25 26 2.636830 CTTAGTGAGGCCACCAGATTG 58.363 52.381 5.01 0.00 44.22 2.67
50 51 1.139734 GCTCTCGGCTCGTCATTGA 59.860 57.895 0.00 0.00 38.06 2.57
54 55 3.749064 GGTGCTCTCGGCTCGTCA 61.749 66.667 0.00 0.00 42.39 4.35
56 57 3.303135 TTGGTGCTCTCGGCTCGT 61.303 61.111 0.00 0.00 42.39 4.18
57 58 2.811317 GTTGGTGCTCTCGGCTCG 60.811 66.667 0.00 0.00 42.39 5.03
74 75 1.406477 GCTAAGGGTTTGGTAGACCGG 60.406 57.143 0.00 0.00 38.08 5.28
100 101 1.324383 TCTAGAGCGTGTGAACACCA 58.676 50.000 7.96 0.00 43.66 4.17
102 103 4.026475 GCATATTCTAGAGCGTGTGAACAC 60.026 45.833 3.41 3.41 43.15 3.32
106 107 3.381590 ACAGCATATTCTAGAGCGTGTGA 59.618 43.478 0.00 0.00 0.00 3.58
108 109 4.115516 CAACAGCATATTCTAGAGCGTGT 58.884 43.478 0.00 0.00 0.00 4.49
125 126 1.986378 GACGACGGAAGATGACAACAG 59.014 52.381 0.00 0.00 0.00 3.16
138 139 1.067212 CTCCTAAAGATGGGACGACGG 59.933 57.143 0.00 0.00 32.00 4.79
156 157 7.054124 TGACAAGGTTAATGTATTGATCCCTC 58.946 38.462 0.00 0.00 0.00 4.30
166 167 2.645297 TGGGCCTGACAAGGTTAATGTA 59.355 45.455 4.53 0.00 46.43 2.29
213 214 3.895656 GTGTAGGATGGTGGCACTATCTA 59.104 47.826 33.52 23.34 36.48 1.98
214 215 2.700897 GTGTAGGATGGTGGCACTATCT 59.299 50.000 33.52 24.15 36.48 1.98
217 218 0.821517 CGTGTAGGATGGTGGCACTA 59.178 55.000 18.45 12.70 0.00 2.74
238 239 2.478370 CGTTGGATGCATGTTGATGGAC 60.478 50.000 2.46 0.00 31.94 4.02
296 297 2.009774 GCATCTTACCGCATCAACAGT 58.990 47.619 0.00 0.00 0.00 3.55
298 299 2.106477 TGCATCTTACCGCATCAACA 57.894 45.000 0.00 0.00 31.95 3.33
328 329 4.785453 CACGAGGGGGCAAGAGGC 62.785 72.222 0.00 0.00 43.74 4.70
355 356 0.761802 TGGGGGCATTGTTTTGGAAC 59.238 50.000 0.00 0.00 36.29 3.62
373 374 1.374252 CGGTGTCGTTCCCCTTCTG 60.374 63.158 0.00 0.00 0.00 3.02
376 377 1.370064 CTTCGGTGTCGTTCCCCTT 59.630 57.895 0.00 0.00 37.69 3.95
381 383 0.234884 CAAAGCCTTCGGTGTCGTTC 59.765 55.000 0.00 0.00 37.69 3.95
401 403 0.464916 TCTCCCGGATCGAACGATGA 60.465 55.000 14.33 8.92 34.60 2.92
408 410 1.305287 TCTGGTTCTCCCGGATCGA 59.695 57.895 0.73 0.00 44.09 3.59
421 423 4.476846 TCTGAGGAGAACTCTAGATCTGGT 59.523 45.833 5.18 0.00 46.72 4.00
442 444 3.854669 CCCCGCTCGGAATGCTCT 61.855 66.667 10.28 0.00 37.50 4.09
460 462 3.414700 CGTTGGCAGTCTGCGTCC 61.415 66.667 18.44 5.72 46.21 4.79
465 467 1.493772 TTAACGTCGTTGGCAGTCTG 58.506 50.000 20.62 0.00 0.00 3.51
485 487 4.175489 CGGACGATGACGACGGCT 62.175 66.667 0.65 0.00 42.66 5.52
489 491 2.126228 TTGGCGGACGATGACGAC 60.126 61.111 0.00 0.00 42.66 4.34
493 495 2.577059 GGTCTTGGCGGACGATGA 59.423 61.111 0.00 0.00 37.12 2.92
494 496 2.829043 TTCGGTCTTGGCGGACGATG 62.829 60.000 0.00 0.00 37.12 3.84
521 523 3.838533 CGTCTGTCGCTGAAAATCG 57.161 52.632 0.00 0.00 0.00 3.34
542 544 4.284550 GCTGCAGGGTTGGGGTGA 62.285 66.667 17.12 0.00 0.00 4.02
554 556 1.672030 CGATGTGGAACCAGCTGCA 60.672 57.895 8.66 0.00 34.36 4.41
555 557 1.672356 ACGATGTGGAACCAGCTGC 60.672 57.895 8.66 0.00 34.36 5.25
567 569 7.577373 GCAATTGCTTACGTCTTCACGATGT 62.577 44.000 23.21 0.00 42.66 3.06
570 572 2.156891 GCAATTGCTTACGTCTTCACGA 59.843 45.455 23.21 0.00 42.66 4.35
572 574 2.724839 CGGCAATTGCTTACGTCTTCAC 60.725 50.000 28.42 7.52 41.70 3.18
605 607 3.407967 CCCTATGGGCGTGGTGGT 61.408 66.667 0.00 0.00 35.35 4.16
647 649 6.767524 TCAGACAAAAATGTTACAACTGGT 57.232 33.333 0.00 0.00 0.00 4.00
677 679 7.705325 GCGACATTTATAACCTCTGTTCTTCTA 59.295 37.037 0.00 0.00 35.87 2.10
706 708 8.404765 ACATTTTTCACATATATGCAACATCGA 58.595 29.630 12.79 0.00 0.00 3.59
719 721 3.925299 CCGCATGCAACATTTTTCACATA 59.075 39.130 19.57 0.00 0.00 2.29
739 741 1.532868 GGCCTCATCATCGAATTTCCG 59.467 52.381 0.00 0.00 0.00 4.30
744 746 2.290134 CCTCATGGCCTCATCATCGAAT 60.290 50.000 3.32 0.00 0.00 3.34
776 778 8.664798 CACCGAACATTTCTTGTCAAATCTATA 58.335 33.333 0.00 0.00 37.68 1.31
808 810 1.890625 TAGGCGTTAGCGGGCTGAAA 61.891 55.000 2.86 0.00 46.35 2.69
855 857 1.226435 CTAGTCCTCGCACTCGCAC 60.226 63.158 0.00 0.00 38.40 5.34
856 858 1.645704 GACTAGTCCTCGCACTCGCA 61.646 60.000 12.13 0.00 38.40 5.10
857 859 1.062845 GACTAGTCCTCGCACTCGC 59.937 63.158 12.13 0.00 35.26 5.03
858 860 1.018148 ATGACTAGTCCTCGCACTCG 58.982 55.000 20.11 0.00 0.00 4.18
859 861 1.066303 CCATGACTAGTCCTCGCACTC 59.934 57.143 20.11 0.00 0.00 3.51
860 862 1.107114 CCATGACTAGTCCTCGCACT 58.893 55.000 20.11 0.00 0.00 4.40
1038 1048 4.668138 AAGGAGGAGAAGAGAGTACAGT 57.332 45.455 0.00 0.00 0.00 3.55
1050 1060 3.145551 GCGCCGGTAAGGAGGAGA 61.146 66.667 1.90 0.00 45.00 3.71
1157 1178 1.000612 GGGAGGAACGAGAGGAGGT 59.999 63.158 0.00 0.00 0.00 3.85
1416 1437 1.526917 GCATAAGCCGGTCAGCCAT 60.527 57.895 1.90 0.00 33.58 4.40
1462 1483 1.165907 CCCAGCTGCGTCTTGAACAA 61.166 55.000 8.66 0.00 0.00 2.83
1716 1744 4.196971 GGGCGTTGTAGAAAGGATACAAT 58.803 43.478 2.25 0.00 43.10 2.71
1817 1848 0.796312 CATTGACTTACCAGCGCGTT 59.204 50.000 8.43 0.00 0.00 4.84
1824 1855 1.276989 GACGGGGACATTGACTTACCA 59.723 52.381 0.00 0.00 0.00 3.25
1828 1859 1.420138 AGTTGACGGGGACATTGACTT 59.580 47.619 0.00 0.00 0.00 3.01
1877 1910 0.035056 GGCCACAAGTATCAGCCAGT 60.035 55.000 0.00 0.00 43.32 4.00
1886 1919 1.993956 AAACTGCATGGCCACAAGTA 58.006 45.000 8.16 0.00 0.00 2.24
1945 1978 6.839124 TTGATCACCAAAAGCAATGTCTAT 57.161 33.333 0.00 0.00 0.00 1.98
2006 2041 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2007 2042 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2008 2043 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2009 2044 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2010 2045 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2011 2046 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2012 2047 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2013 2048 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2014 2049 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2015 2050 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2016 2051 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2017 2052 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2018 2053 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2019 2054 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2020 2055 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2021 2056 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2022 2057 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2023 2058 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2024 2059 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2025 2060 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2026 2061 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2027 2062 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2028 2063 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2029 2064 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2030 2065 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2031 2066 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2032 2067 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2033 2068 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2061 2096 9.807921 TCACAAGTATGGATGTATCTAGATGTA 57.192 33.333 15.79 4.44 0.00 2.29
2062 2097 8.580720 GTCACAAGTATGGATGTATCTAGATGT 58.419 37.037 15.79 1.25 0.00 3.06
2063 2098 8.579863 TGTCACAAGTATGGATGTATCTAGATG 58.420 37.037 15.79 0.00 0.00 2.90
2064 2099 8.712228 TGTCACAAGTATGGATGTATCTAGAT 57.288 34.615 10.73 10.73 0.00 1.98
2065 2100 8.533569 TTGTCACAAGTATGGATGTATCTAGA 57.466 34.615 0.00 0.00 0.00 2.43
2066 2101 8.417106 ACTTGTCACAAGTATGGATGTATCTAG 58.583 37.037 22.08 0.00 0.00 2.43
2067 2102 8.306313 ACTTGTCACAAGTATGGATGTATCTA 57.694 34.615 22.08 0.00 0.00 1.98
2068 2103 7.187824 ACTTGTCACAAGTATGGATGTATCT 57.812 36.000 22.08 0.00 0.00 1.98
2069 2104 8.942338 TTACTTGTCACAAGTATGGATGTATC 57.058 34.615 27.30 0.00 33.27 2.24
2070 2105 9.905713 AATTACTTGTCACAAGTATGGATGTAT 57.094 29.630 27.30 15.02 33.27 2.29
2071 2106 9.378551 GAATTACTTGTCACAAGTATGGATGTA 57.621 33.333 27.30 13.53 33.27 2.29
2072 2107 7.064609 CGAATTACTTGTCACAAGTATGGATGT 59.935 37.037 27.30 11.61 33.27 3.06
2073 2108 7.401860 CGAATTACTTGTCACAAGTATGGATG 58.598 38.462 27.30 14.53 33.27 3.51
2074 2109 6.538742 CCGAATTACTTGTCACAAGTATGGAT 59.461 38.462 27.30 16.93 33.27 3.41
2075 2110 5.872617 CCGAATTACTTGTCACAAGTATGGA 59.127 40.000 27.30 15.51 33.27 3.41
2076 2111 5.872617 TCCGAATTACTTGTCACAAGTATGG 59.127 40.000 27.30 23.89 33.27 2.74
2077 2112 6.961359 TCCGAATTACTTGTCACAAGTATG 57.039 37.500 27.30 17.76 33.27 2.39
2078 2113 6.090358 CGTTCCGAATTACTTGTCACAAGTAT 59.910 38.462 27.30 15.94 33.27 2.12
2079 2114 5.403166 CGTTCCGAATTACTTGTCACAAGTA 59.597 40.000 23.96 23.96 0.00 2.24
2080 2115 4.210537 CGTTCCGAATTACTTGTCACAAGT 59.789 41.667 26.11 26.11 0.00 3.16
2081 2116 4.446385 TCGTTCCGAATTACTTGTCACAAG 59.554 41.667 16.42 16.42 31.06 3.16
2082 2117 4.370049 TCGTTCCGAATTACTTGTCACAA 58.630 39.130 0.00 0.00 31.06 3.33
2083 2118 3.979948 TCGTTCCGAATTACTTGTCACA 58.020 40.909 0.00 0.00 31.06 3.58
2084 2119 4.143179 CCTTCGTTCCGAATTACTTGTCAC 60.143 45.833 0.00 0.00 44.85 3.67
2085 2120 3.991773 CCTTCGTTCCGAATTACTTGTCA 59.008 43.478 0.00 0.00 44.85 3.58
2086 2121 3.370061 CCCTTCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 44.85 3.18
2087 2122 3.007182 TCCCTTCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 44.85 3.16
2088 2123 3.592059 TCCCTTCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 44.85 3.16
2089 2124 3.260128 ACTCCCTTCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 44.85 2.24
2090 2125 2.830321 ACTCCCTTCGTTCCGAATTACT 59.170 45.455 0.00 0.00 44.85 2.24
2091 2126 3.242549 ACTCCCTTCGTTCCGAATTAC 57.757 47.619 0.00 0.00 44.85 1.89
2092 2127 4.272489 TCTACTCCCTTCGTTCCGAATTA 58.728 43.478 0.00 0.00 44.85 1.40
2093 2128 3.094572 TCTACTCCCTTCGTTCCGAATT 58.905 45.455 0.00 0.00 44.85 2.17
2094 2129 2.731572 TCTACTCCCTTCGTTCCGAAT 58.268 47.619 0.00 0.00 44.85 3.34
2095 2130 2.205022 TCTACTCCCTTCGTTCCGAA 57.795 50.000 0.00 0.00 43.75 4.30
2096 2131 2.089980 CTTCTACTCCCTTCGTTCCGA 58.910 52.381 0.00 0.00 0.00 4.55
2097 2132 2.089980 TCTTCTACTCCCTTCGTTCCG 58.910 52.381 0.00 0.00 0.00 4.30
2098 2133 4.278919 CCTATCTTCTACTCCCTTCGTTCC 59.721 50.000 0.00 0.00 0.00 3.62
2099 2134 4.278919 CCCTATCTTCTACTCCCTTCGTTC 59.721 50.000 0.00 0.00 0.00 3.95
2100 2135 4.216708 CCCTATCTTCTACTCCCTTCGTT 58.783 47.826 0.00 0.00 0.00 3.85
2101 2136 3.204831 ACCCTATCTTCTACTCCCTTCGT 59.795 47.826 0.00 0.00 0.00 3.85
2102 2137 3.834938 ACCCTATCTTCTACTCCCTTCG 58.165 50.000 0.00 0.00 0.00 3.79
2103 2138 6.840181 AGTTTACCCTATCTTCTACTCCCTTC 59.160 42.308 0.00 0.00 0.00 3.46
2104 2139 6.754178 AGTTTACCCTATCTTCTACTCCCTT 58.246 40.000 0.00 0.00 0.00 3.95
2105 2140 6.358443 AGTTTACCCTATCTTCTACTCCCT 57.642 41.667 0.00 0.00 0.00 4.20
2106 2141 8.724113 AATAGTTTACCCTATCTTCTACTCCC 57.276 38.462 0.00 0.00 0.00 4.30
2107 2142 9.590828 AGAATAGTTTACCCTATCTTCTACTCC 57.409 37.037 0.00 0.00 0.00 3.85
2134 2169 4.470462 CGCTCTCAGTCAAAAGGAAAATG 58.530 43.478 0.00 0.00 0.00 2.32
2136 2171 2.878406 CCGCTCTCAGTCAAAAGGAAAA 59.122 45.455 0.00 0.00 0.00 2.29
2214 2258 1.202582 ACTGGAATCGAGACGAACAGG 59.797 52.381 19.19 8.69 39.99 4.00
2226 2270 1.503542 CACGGCAGCAACTGGAATC 59.496 57.895 0.00 0.00 31.21 2.52
2232 2276 2.516930 AACAGCACGGCAGCAACT 60.517 55.556 0.00 0.00 36.85 3.16
2240 2284 2.118404 AACACCACCAACAGCACGG 61.118 57.895 0.00 0.00 0.00 4.94
2254 2298 5.237344 ACAGATAGAAAGCAACTGTCAACAC 59.763 40.000 0.00 0.00 37.24 3.32
2271 2315 4.825422 TGTTCTTCCTCTTGCACAGATAG 58.175 43.478 0.00 0.00 0.00 2.08
2277 2321 4.498177 GGTTTCTTGTTCTTCCTCTTGCAC 60.498 45.833 0.00 0.00 0.00 4.57
2303 2347 3.429085 CTGGATAAAAGCACATGTTCGC 58.571 45.455 0.00 0.00 0.00 4.70
2315 2359 0.742990 CTCACCGGCGCTGGATAAAA 60.743 55.000 41.14 18.84 0.00 1.52
2316 2360 1.153449 CTCACCGGCGCTGGATAAA 60.153 57.895 41.14 20.56 0.00 1.40
2317 2361 2.355986 ACTCACCGGCGCTGGATAA 61.356 57.895 41.14 22.99 0.00 1.75
2383 2452 8.812972 TCACAGAAACAAACAGTATATAGGAGT 58.187 33.333 0.00 0.00 0.00 3.85
2384 2453 9.307121 CTCACAGAAACAAACAGTATATAGGAG 57.693 37.037 0.00 0.00 0.00 3.69
2385 2454 7.764443 GCTCACAGAAACAAACAGTATATAGGA 59.236 37.037 0.00 0.00 0.00 2.94
2404 2477 1.543607 TCCTCACTCTCTGCTCACAG 58.456 55.000 0.00 0.00 45.95 3.66
2425 2498 3.831333 TCTGAGCTTCTCATGTCTGTTCT 59.169 43.478 0.00 0.00 39.92 3.01
2481 2555 0.951040 CGGAGAAGTTGTCAGTGGCC 60.951 60.000 0.00 0.00 0.00 5.36
2499 2573 2.901249 TCCCCGAGCTTATTTTCTTCG 58.099 47.619 0.00 0.00 0.00 3.79
2555 2630 6.834168 TTAATTTCTCATGTTCCAGGTTCC 57.166 37.500 0.00 0.00 0.00 3.62
2560 2635 7.467811 CGGAGGAATTAATTTCTCATGTTCCAG 60.468 40.741 29.48 11.08 42.93 3.86
2582 2668 4.503007 CGATTGTTATGTACAGGAACGGAG 59.497 45.833 15.12 6.39 38.19 4.63
2615 2721 2.031012 TGCAGAGTGCCCTGAACG 59.969 61.111 0.00 0.00 44.23 3.95
2675 2797 3.535629 CTCCACGTGCCCTTGCTGA 62.536 63.158 10.91 0.00 38.71 4.26
2845 2967 9.204570 GTCGCTTAATTGGACATATATAACAGT 57.795 33.333 0.00 0.00 0.00 3.55
2846 2968 9.203421 TGTCGCTTAATTGGACATATATAACAG 57.797 33.333 0.00 0.00 35.89 3.16
2847 2969 9.719355 ATGTCGCTTAATTGGACATATATAACA 57.281 29.630 12.03 0.00 46.44 2.41
2857 2995 4.946784 ACTGAATGTCGCTTAATTGGAC 57.053 40.909 0.00 0.00 0.00 4.02
2859 2997 5.698832 TGAAACTGAATGTCGCTTAATTGG 58.301 37.500 0.00 0.00 0.00 3.16
2868 3006 5.443824 CGAGATGACTTGAAACTGAATGTCG 60.444 44.000 0.00 0.00 0.00 4.35
2896 3034 5.117592 GTGCGAAAACACGTACACTTACTAT 59.882 40.000 0.00 0.00 45.18 2.12
2899 3084 3.525237 GTGCGAAAACACGTACACTTAC 58.475 45.455 0.00 0.00 45.18 2.34
2905 3090 4.180844 TGTTAAGTGCGAAAACACGTAC 57.819 40.909 0.00 0.00 45.45 3.67
2915 3100 2.163412 GCAATCCCATTGTTAAGTGCGA 59.837 45.455 0.00 0.00 42.20 5.10
2918 3103 4.517952 TGTGCAATCCCATTGTTAAGTG 57.482 40.909 0.00 0.00 42.20 3.16
2922 3107 4.453177 CACATGTGCAATCCCATTGTTA 57.547 40.909 13.94 0.00 42.20 2.41
2965 3202 2.261671 CACGTAAGCTCCTGCCGT 59.738 61.111 0.00 0.00 45.62 5.68
2989 3226 2.412591 CCCTGGATGATCCTGTACCTT 58.587 52.381 13.44 0.00 37.46 3.50
3025 3262 5.116084 TGGAATCTTCATGGAGGTAAAGG 57.884 43.478 0.00 0.00 0.00 3.11
3046 3283 1.811558 CGGTGGATGATGGTTAGCCTG 60.812 57.143 0.00 0.00 35.27 4.85
3052 3289 1.607612 GTCCCGGTGGATGATGGTT 59.392 57.895 0.00 0.00 44.28 3.67
3238 3475 1.134560 GGTTCTCGGCTTCTCGTACAT 59.865 52.381 0.00 0.00 0.00 2.29
3245 3482 0.680280 TAGCTCGGTTCTCGGCTTCT 60.680 55.000 0.00 0.00 42.37 2.85
3249 3486 1.445716 TAGCTAGCTCGGTTCTCGGC 61.446 60.000 23.26 0.00 39.77 5.54
3253 3490 3.786635 CATTGTTAGCTAGCTCGGTTCT 58.213 45.455 23.26 0.00 0.00 3.01
3280 3521 0.523072 CCACTGCATTTCAAGACGGG 59.477 55.000 0.00 0.00 0.00 5.28
3309 3550 3.307906 TGCAAGGCGTACTCCGGT 61.308 61.111 0.00 0.00 36.94 5.28
3322 3563 1.741401 CGGAGAAGATGCCGTGCAA 60.741 57.895 2.68 0.00 43.62 4.08
3414 3655 0.949105 CGCCATTAGTGCCCGGATAC 60.949 60.000 0.73 0.47 0.00 2.24
3465 3713 1.202568 TGACTGATCCGGCATGATCAC 60.203 52.381 11.99 6.03 44.65 3.06
3468 3716 2.945080 ATTGACTGATCCGGCATGAT 57.055 45.000 0.00 0.00 0.00 2.45
3474 3730 3.997021 GCCAGTTATATTGACTGATCCGG 59.003 47.826 16.35 0.00 45.72 5.14
3488 3744 5.006386 GCAGGAGCATAATTAGCCAGTTAT 58.994 41.667 0.00 0.00 41.58 1.89
3865 4130 3.434940 AGCCGAGAACACCCTATTTTT 57.565 42.857 0.00 0.00 0.00 1.94
3881 4146 3.197790 CGATGCCACCAGAAGCCG 61.198 66.667 0.00 0.00 0.00 5.52
3922 4187 0.108804 AACACATCGCCTAGTCCACG 60.109 55.000 0.00 0.00 0.00 4.94
3927 4192 4.119442 ACGATTTAACACATCGCCTAGT 57.881 40.909 7.72 0.00 46.17 2.57
3929 4194 7.493320 AGAATAAACGATTTAACACATCGCCTA 59.507 33.333 7.72 1.60 46.17 3.93
3930 4195 6.315393 AGAATAAACGATTTAACACATCGCCT 59.685 34.615 7.72 0.00 46.17 5.52
3931 4196 6.483687 AGAATAAACGATTTAACACATCGCC 58.516 36.000 7.72 0.00 46.17 5.54
3932 4197 7.948513 AAGAATAAACGATTTAACACATCGC 57.051 32.000 7.72 0.00 46.17 4.58
3971 4254 9.986833 GCATTTCTGTTGAAAATTAAACAACTT 57.013 25.926 17.02 0.00 44.22 2.66
3972 4255 9.382275 AGCATTTCTGTTGAAAATTAAACAACT 57.618 25.926 17.02 1.97 44.22 3.16
4146 4514 7.961326 AGGGCATAAAATTTAGACTCAATGT 57.039 32.000 0.00 0.00 0.00 2.71
4204 4572 5.116882 GTCCTTCTATCTGCCGTTTAACAT 58.883 41.667 0.00 0.00 0.00 2.71
4211 4579 3.914426 AAATGTCCTTCTATCTGCCGT 57.086 42.857 0.00 0.00 0.00 5.68
4212 4580 5.007724 GGTAAAAATGTCCTTCTATCTGCCG 59.992 44.000 0.00 0.00 0.00 5.69
4217 4585 8.624776 CATCAAGGGTAAAAATGTCCTTCTATC 58.375 37.037 0.00 0.00 37.50 2.08
4219 4587 7.466804 ACATCAAGGGTAAAAATGTCCTTCTA 58.533 34.615 0.00 0.00 37.50 2.10
4220 4588 6.314917 ACATCAAGGGTAAAAATGTCCTTCT 58.685 36.000 0.00 0.00 37.50 2.85
4221 4589 6.590234 ACATCAAGGGTAAAAATGTCCTTC 57.410 37.500 0.00 0.00 37.50 3.46
4224 4592 9.965824 CATATTACATCAAGGGTAAAAATGTCC 57.034 33.333 0.00 0.00 34.67 4.02
4238 4606 4.681074 TGACCGGCTCATATTACATCAA 57.319 40.909 0.00 0.00 0.00 2.57
4241 4609 4.284490 ACAGATGACCGGCTCATATTACAT 59.716 41.667 16.34 3.39 39.96 2.29
4254 4622 1.664016 GCAACTTGCAACAGATGACCG 60.664 52.381 8.97 0.00 44.26 4.79
4281 4649 0.325933 GGATGGATGCATGGATCGGA 59.674 55.000 19.49 10.08 0.00 4.55
4283 4651 0.679002 GGGGATGGATGCATGGATCG 60.679 60.000 19.49 0.00 0.00 3.69
4287 4655 2.987547 GCGGGGATGGATGCATGG 60.988 66.667 2.46 0.00 0.00 3.66
4351 4724 0.665369 GCGTACGTGGTTGTGTAGCT 60.665 55.000 17.90 0.00 0.00 3.32
4353 4726 0.780002 GTGCGTACGTGGTTGTGTAG 59.220 55.000 17.90 0.00 0.00 2.74
4354 4727 0.385029 AGTGCGTACGTGGTTGTGTA 59.615 50.000 17.90 0.00 0.00 2.90
4357 4730 1.490621 GTTAGTGCGTACGTGGTTGT 58.509 50.000 17.90 0.00 0.00 3.32
4360 4733 0.038892 CTGGTTAGTGCGTACGTGGT 60.039 55.000 17.90 3.91 0.00 4.16
4363 4736 0.388134 CAGCTGGTTAGTGCGTACGT 60.388 55.000 17.90 0.00 0.00 3.57
4370 7355 2.669670 CGAGAGACACAGCTGGTTAGTG 60.670 54.545 19.93 9.26 39.12 2.74
4380 7365 3.099267 AGTTGAAACCGAGAGACACAG 57.901 47.619 0.00 0.00 0.00 3.66
4383 7368 3.812156 TCAAGTTGAAACCGAGAGACA 57.188 42.857 2.20 0.00 0.00 3.41
4384 7369 3.680458 GGATCAAGTTGAAACCGAGAGAC 59.320 47.826 10.14 0.00 0.00 3.36
4391 7376 4.952335 AGATGGATGGATCAAGTTGAAACC 59.048 41.667 19.25 19.25 0.00 3.27
4395 7380 4.202398 GGCTAGATGGATGGATCAAGTTGA 60.202 45.833 8.27 8.27 0.00 3.18
4398 7383 2.301296 CGGCTAGATGGATGGATCAAGT 59.699 50.000 0.00 0.00 0.00 3.16
4484 7496 4.529219 CTGCCCAGGATGCGCGTA 62.529 66.667 8.43 2.40 44.40 4.42
4498 7510 1.124462 CGCGTATACAAGCTCTCTGC 58.876 55.000 0.00 0.00 43.29 4.26
4512 7524 2.780065 AGTTCTTGTGTACACGCGTA 57.220 45.000 20.61 5.65 0.00 4.42
4517 7529 7.599245 AGTGCTTATTCTAGTTCTTGTGTACAC 59.401 37.037 19.36 19.36 0.00 2.90
4576 7588 3.587797 TCTGACCGGTTTAGTTGCTAG 57.412 47.619 9.42 0.00 0.00 3.42
4577 7589 4.463539 TGTATCTGACCGGTTTAGTTGCTA 59.536 41.667 9.42 0.00 0.00 3.49
4584 7596 4.500127 CATGTGTGTATCTGACCGGTTTA 58.500 43.478 9.42 0.00 0.00 2.01
4592 7604 1.278699 TGGCTGCATGTGTGTATCTGA 59.721 47.619 0.50 0.00 0.00 3.27
4595 7607 1.938577 CTCTGGCTGCATGTGTGTATC 59.061 52.381 0.50 0.00 0.00 2.24
4599 7611 1.015109 GATCTCTGGCTGCATGTGTG 58.985 55.000 0.50 0.00 0.00 3.82
4610 7622 3.573538 AGTAGCTACATGCAGATCTCTGG 59.426 47.826 25.28 0.00 45.94 3.86
4639 7651 4.202295 TGGTTTGTTGTATGTGGGTACGTA 60.202 41.667 0.00 0.00 0.00 3.57
4640 7652 3.140623 GGTTTGTTGTATGTGGGTACGT 58.859 45.455 0.00 0.00 0.00 3.57
4648 7660 3.506067 GGCTAGCTTGGTTTGTTGTATGT 59.494 43.478 15.72 0.00 0.00 2.29
4649 7661 3.426159 CGGCTAGCTTGGTTTGTTGTATG 60.426 47.826 15.72 0.00 0.00 2.39
4652 7664 0.951558 CGGCTAGCTTGGTTTGTTGT 59.048 50.000 15.72 0.00 0.00 3.32
4666 7678 2.103432 TGAAAGAACACTTGTCCGGCTA 59.897 45.455 0.00 0.00 0.00 3.93
4667 7679 1.134220 TGAAAGAACACTTGTCCGGCT 60.134 47.619 0.00 0.00 0.00 5.52
4669 7681 3.138304 TGATGAAAGAACACTTGTCCGG 58.862 45.455 0.00 0.00 0.00 5.14
4670 7682 5.362556 AATGATGAAAGAACACTTGTCCG 57.637 39.130 0.00 0.00 0.00 4.79
4691 7703 9.781834 CGTGACCAAAATTCTAATAAATGCTAA 57.218 29.630 0.00 0.00 0.00 3.09
4712 7724 1.741394 GCCCCTTATGTGGTACGTGAC 60.741 57.143 0.00 0.00 0.00 3.67
4713 7725 0.538118 GCCCCTTATGTGGTACGTGA 59.462 55.000 0.00 0.00 0.00 4.35
4717 7729 5.198207 ACTATTTTGCCCCTTATGTGGTAC 58.802 41.667 0.00 0.00 0.00 3.34
4720 7732 4.536765 AGACTATTTTGCCCCTTATGTGG 58.463 43.478 0.00 0.00 0.00 4.17
4726 7738 5.543790 ACATGAAAAGACTATTTTGCCCCTT 59.456 36.000 0.00 0.00 0.00 3.95
4728 7740 5.405935 ACATGAAAAGACTATTTTGCCCC 57.594 39.130 0.00 0.00 0.00 5.80
4738 7750 8.739972 GGGTGTTAAATGATACATGAAAAGACT 58.260 33.333 0.00 0.00 0.00 3.24
4750 7762 5.186256 TGCCTGAAGGGTGTTAAATGATA 57.814 39.130 0.00 0.00 37.43 2.15
4751 7763 4.046286 TGCCTGAAGGGTGTTAAATGAT 57.954 40.909 0.00 0.00 37.43 2.45
4764 7776 7.816031 ACACTTTCATTCATTTTATGCCTGAAG 59.184 33.333 0.00 0.00 34.35 3.02
4767 7779 7.062605 GTGACACTTTCATTCATTTTATGCCTG 59.937 37.037 0.00 0.00 36.32 4.85
4769 7781 6.867816 TGTGACACTTTCATTCATTTTATGCC 59.132 34.615 7.20 0.00 36.32 4.40
4780 7792 4.734398 TGCCTTTTGTGACACTTTCATT 57.266 36.364 7.20 0.00 36.32 2.57
4791 7803 7.867445 ACGTCTAAATTTTATGCCTTTTGTG 57.133 32.000 0.00 0.00 0.00 3.33
4793 7805 9.061610 CACTACGTCTAAATTTTATGCCTTTTG 57.938 33.333 0.00 0.00 0.00 2.44
4814 7826 6.879458 ACAATTTCTTCCCTATGTGACACTAC 59.121 38.462 7.20 0.00 0.00 2.73
4820 7832 7.229707 TCGAAAAACAATTTCTTCCCTATGTGA 59.770 33.333 0.00 0.00 0.00 3.58
4825 7837 7.229707 TGACATCGAAAAACAATTTCTTCCCTA 59.770 33.333 0.00 0.00 0.00 3.53
4826 7838 6.040391 TGACATCGAAAAACAATTTCTTCCCT 59.960 34.615 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.