Multiple sequence alignment - TraesCS1B01G283100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G283100 chr1B 100.000 3730 0 0 1 3730 492299629 492295900 0.000000e+00 6889.0
1 TraesCS1B01G283100 chr1B 93.699 730 41 3 3003 3730 492281408 492280682 0.000000e+00 1088.0
2 TraesCS1B01G283100 chr1B 92.044 729 54 4 3004 3730 4500989 4501715 0.000000e+00 1022.0
3 TraesCS1B01G283100 chr1B 91.918 730 55 4 3003 3730 4505346 4506073 0.000000e+00 1018.0
4 TraesCS1B01G283100 chr1B 89.377 273 24 3 1577 1848 492297694 492297426 4.610000e-89 339.0
5 TraesCS1B01G283100 chr1B 89.377 273 24 3 1936 2204 492298053 492297782 4.610000e-89 339.0
6 TraesCS1B01G283100 chr1B 94.737 57 3 0 1 57 108837099 108837043 5.130000e-14 89.8
7 TraesCS1B01G283100 chr1A 87.559 1278 66 48 622 1853 467160230 467159000 0.000000e+00 1393.0
8 TraesCS1B01G283100 chr1A 91.434 502 33 6 1936 2432 467159271 467158775 0.000000e+00 680.0
9 TraesCS1B01G283100 chr1A 92.727 330 23 1 1 330 467160992 467160664 3.370000e-130 475.0
10 TraesCS1B01G283100 chr1A 86.081 467 34 11 2541 3003 467156809 467156370 1.210000e-129 473.0
11 TraesCS1B01G283100 chr1A 96.429 56 2 0 2490 2545 467156899 467156844 3.970000e-15 93.5
12 TraesCS1B01G283100 chr1A 94.737 57 3 0 1 57 65899780 65899724 5.130000e-14 89.8
13 TraesCS1B01G283100 chr7B 92.877 730 48 4 3004 3730 40612589 40611861 0.000000e+00 1057.0
14 TraesCS1B01G283100 chr7B 92.224 733 50 7 3003 3730 416165592 416164862 0.000000e+00 1031.0
15 TraesCS1B01G283100 chr7B 92.192 730 54 3 3003 3730 208484614 208485342 0.000000e+00 1029.0
16 TraesCS1B01G283100 chr7B 91.655 731 55 6 3003 3730 40585555 40584828 0.000000e+00 1007.0
17 TraesCS1B01G283100 chr5B 92.077 732 52 6 3003 3730 103147775 103148504 0.000000e+00 1026.0
18 TraesCS1B01G283100 chr2B 91.736 726 58 2 3006 3730 581356375 581355651 0.000000e+00 1007.0
19 TraesCS1B01G283100 chr1D 86.216 798 45 30 511 1270 367837959 367837189 0.000000e+00 804.0
20 TraesCS1B01G283100 chr1D 90.807 533 40 4 2421 2951 367834081 367833556 0.000000e+00 704.0
21 TraesCS1B01G283100 chr1D 89.444 360 34 3 2075 2432 367834482 367834125 5.680000e-123 451.0
22 TraesCS1B01G283100 chr1D 90.938 320 27 2 1 320 367838527 367838210 2.660000e-116 429.0
23 TraesCS1B01G283100 chr1D 81.159 276 21 11 1454 1729 367835597 367835353 3.800000e-45 193.0
24 TraesCS1B01G283100 chr1D 90.071 141 12 2 1713 1853 367834488 367834350 8.230000e-42 182.0
25 TraesCS1B01G283100 chr1D 92.982 57 4 0 1 57 67344058 67344002 2.390000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G283100 chr1B 492295900 492299629 3729 True 2522.333333 6889 92.918000 1 3730 3 chr1B.!!$R3 3729
1 TraesCS1B01G283100 chr1B 492280682 492281408 726 True 1088.000000 1088 93.699000 3003 3730 1 chr1B.!!$R2 727
2 TraesCS1B01G283100 chr1B 4500989 4506073 5084 False 1020.000000 1022 91.981000 3003 3730 2 chr1B.!!$F1 727
3 TraesCS1B01G283100 chr1A 467156370 467160992 4622 True 622.900000 1393 90.846000 1 3003 5 chr1A.!!$R2 3002
4 TraesCS1B01G283100 chr7B 40611861 40612589 728 True 1057.000000 1057 92.877000 3004 3730 1 chr7B.!!$R2 726
5 TraesCS1B01G283100 chr7B 416164862 416165592 730 True 1031.000000 1031 92.224000 3003 3730 1 chr7B.!!$R3 727
6 TraesCS1B01G283100 chr7B 208484614 208485342 728 False 1029.000000 1029 92.192000 3003 3730 1 chr7B.!!$F1 727
7 TraesCS1B01G283100 chr7B 40584828 40585555 727 True 1007.000000 1007 91.655000 3003 3730 1 chr7B.!!$R1 727
8 TraesCS1B01G283100 chr5B 103147775 103148504 729 False 1026.000000 1026 92.077000 3003 3730 1 chr5B.!!$F1 727
9 TraesCS1B01G283100 chr2B 581355651 581356375 724 True 1007.000000 1007 91.736000 3006 3730 1 chr2B.!!$R1 724
10 TraesCS1B01G283100 chr1D 367833556 367838527 4971 True 460.500000 804 88.105833 1 2951 6 chr1D.!!$R2 2950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 618 0.032952 GAACGTGTACTCACCAGGCA 59.967 55.0 0.0 0.0 41.09 4.75 F
1333 1600 0.035439 CCGGCACCTGGATGTTTAGT 60.035 55.0 0.0 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 3409 0.037590 ATGCAACGGCCCAGTTCTTA 59.962 50.000 0.0 0.0 40.13 2.1 R
2900 7374 1.281867 TCCGAGCCAACAATCCAGAAT 59.718 47.619 0.0 0.0 0.00 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 5.055812 GCGATCTTCTTCATCTCCATTTCT 58.944 41.667 0.00 0.00 0.00 2.52
63 64 6.760298 CGATCTTCTTCATCTCCATTTCTGAA 59.240 38.462 0.00 0.00 0.00 3.02
131 132 4.497291 TCACGGTTTTATTAGCTGGGAT 57.503 40.909 0.00 0.00 0.00 3.85
160 161 9.113838 GGAAGTCTTATTTAGCTTGATGATGAA 57.886 33.333 0.00 0.00 0.00 2.57
174 175 1.303309 GATGAACGATGCTTGGGAGG 58.697 55.000 0.00 0.00 0.00 4.30
223 224 1.561643 TGAGTGGTTAGGAGCAGGAG 58.438 55.000 0.00 0.00 33.20 3.69
224 225 0.176910 GAGTGGTTAGGAGCAGGAGC 59.823 60.000 0.00 0.00 42.56 4.70
244 245 2.602322 GGATGATCGCGCTCTTGGC 61.602 63.158 11.66 0.00 37.64 4.52
272 273 0.445043 GATGGTTTAACGGTGGTCGC 59.555 55.000 0.00 0.00 43.89 5.19
291 292 1.077068 AGAGCGGAGAGGGTCAGAG 60.077 63.158 0.00 0.00 36.90 3.35
326 327 3.049470 TGCCATGCATGCGTTTGT 58.951 50.000 21.69 0.00 31.71 2.83
331 354 1.541475 CATGCATGCGTTTGTAGCTG 58.459 50.000 14.93 0.00 35.28 4.24
335 358 3.006247 TGCATGCGTTTGTAGCTGATTA 58.994 40.909 14.09 0.00 35.28 1.75
342 365 4.351192 CGTTTGTAGCTGATTATTTGCCC 58.649 43.478 0.00 0.00 0.00 5.36
353 376 2.818751 TATTTGCCCGGTTTCCTCAT 57.181 45.000 0.00 0.00 0.00 2.90
357 380 1.303282 GCCCGGTTTCCTCATCCTT 59.697 57.895 0.00 0.00 0.00 3.36
358 381 0.544697 GCCCGGTTTCCTCATCCTTA 59.455 55.000 0.00 0.00 0.00 2.69
359 382 1.475213 GCCCGGTTTCCTCATCCTTAG 60.475 57.143 0.00 0.00 0.00 2.18
363 542 2.481449 CGGTTTCCTCATCCTTAGGACG 60.481 54.545 1.74 0.00 42.89 4.79
364 543 2.552031 GTTTCCTCATCCTTAGGACGC 58.448 52.381 1.74 0.00 42.89 5.19
422 601 3.811031 TTTTTGCGGGTGAGAGGAA 57.189 47.368 0.00 0.00 0.00 3.36
423 602 1.314730 TTTTTGCGGGTGAGAGGAAC 58.685 50.000 0.00 0.00 0.00 3.62
424 603 0.882927 TTTTGCGGGTGAGAGGAACG 60.883 55.000 0.00 0.00 0.00 3.95
425 604 2.035237 TTTGCGGGTGAGAGGAACGT 62.035 55.000 0.00 0.00 0.00 3.99
426 605 2.432628 GCGGGTGAGAGGAACGTG 60.433 66.667 0.00 0.00 0.00 4.49
427 606 3.048602 CGGGTGAGAGGAACGTGT 58.951 61.111 0.00 0.00 0.00 4.49
428 607 1.870055 GCGGGTGAGAGGAACGTGTA 61.870 60.000 0.00 0.00 0.00 2.90
429 608 0.109412 CGGGTGAGAGGAACGTGTAC 60.109 60.000 0.00 0.00 0.00 2.90
430 609 1.254954 GGGTGAGAGGAACGTGTACT 58.745 55.000 0.00 0.00 0.00 2.73
431 610 1.201880 GGGTGAGAGGAACGTGTACTC 59.798 57.143 6.35 6.35 0.00 2.59
432 611 1.884579 GGTGAGAGGAACGTGTACTCA 59.115 52.381 14.37 12.02 35.65 3.41
433 612 2.931228 GTGAGAGGAACGTGTACTCAC 58.069 52.381 20.67 20.67 46.16 3.51
434 613 1.884579 TGAGAGGAACGTGTACTCACC 59.115 52.381 14.37 7.92 41.09 4.02
435 614 1.884579 GAGAGGAACGTGTACTCACCA 59.115 52.381 14.37 0.00 41.09 4.17
436 615 1.887198 AGAGGAACGTGTACTCACCAG 59.113 52.381 14.37 0.00 41.09 4.00
437 616 0.966920 AGGAACGTGTACTCACCAGG 59.033 55.000 0.00 0.00 41.09 4.45
438 617 0.669625 GGAACGTGTACTCACCAGGC 60.670 60.000 0.00 0.00 41.09 4.85
439 618 0.032952 GAACGTGTACTCACCAGGCA 59.967 55.000 0.00 0.00 41.09 4.75
440 619 0.685097 AACGTGTACTCACCAGGCAT 59.315 50.000 0.00 0.00 41.09 4.40
441 620 0.037326 ACGTGTACTCACCAGGCATG 60.037 55.000 0.00 0.00 41.09 4.06
442 621 1.361668 CGTGTACTCACCAGGCATGC 61.362 60.000 9.90 9.90 41.09 4.06
443 622 0.321564 GTGTACTCACCAGGCATGCA 60.322 55.000 21.36 0.00 38.51 3.96
444 623 0.620030 TGTACTCACCAGGCATGCAT 59.380 50.000 21.36 10.32 0.00 3.96
445 624 1.019673 GTACTCACCAGGCATGCATG 58.980 55.000 24.89 24.89 0.00 4.06
460 639 5.883328 CATGCATGCATATCTTGTTTCAC 57.117 39.130 31.73 0.00 34.91 3.18
461 640 5.588240 CATGCATGCATATCTTGTTTCACT 58.412 37.500 31.73 3.67 34.91 3.41
462 641 4.989044 TGCATGCATATCTTGTTTCACTG 58.011 39.130 18.46 0.00 0.00 3.66
463 642 3.795101 GCATGCATATCTTGTTTCACTGC 59.205 43.478 14.21 0.00 0.00 4.40
464 643 4.439700 GCATGCATATCTTGTTTCACTGCT 60.440 41.667 14.21 0.00 0.00 4.24
465 644 5.220912 GCATGCATATCTTGTTTCACTGCTA 60.221 40.000 14.21 0.00 0.00 3.49
466 645 6.427974 CATGCATATCTTGTTTCACTGCTAG 58.572 40.000 0.00 0.00 0.00 3.42
467 646 4.333649 TGCATATCTTGTTTCACTGCTAGC 59.666 41.667 8.10 8.10 0.00 3.42
468 647 4.333649 GCATATCTTGTTTCACTGCTAGCA 59.666 41.667 18.22 18.22 0.00 3.49
469 648 5.008415 GCATATCTTGTTTCACTGCTAGCAT 59.992 40.000 19.72 5.84 0.00 3.79
470 649 6.656945 CATATCTTGTTTCACTGCTAGCATC 58.343 40.000 19.72 5.66 0.00 3.91
481 660 5.241728 TCACTGCTAGCATCGTAACAGATAT 59.758 40.000 19.72 0.00 0.00 1.63
488 667 6.791887 AGCATCGTAACAGATATGGAATTG 57.208 37.500 0.00 0.00 0.00 2.32
493 672 5.365605 TCGTAACAGATATGGAATTGAGGGT 59.634 40.000 0.00 0.00 0.00 4.34
497 676 5.440610 ACAGATATGGAATTGAGGGTTGTC 58.559 41.667 0.00 0.00 0.00 3.18
498 677 5.192522 ACAGATATGGAATTGAGGGTTGTCT 59.807 40.000 0.00 0.00 0.00 3.41
500 679 7.072961 ACAGATATGGAATTGAGGGTTGTCTAT 59.927 37.037 0.00 0.00 0.00 1.98
502 681 9.343994 AGATATGGAATTGAGGGTTGTCTATAT 57.656 33.333 0.00 0.00 0.00 0.86
503 682 9.965902 GATATGGAATTGAGGGTTGTCTATATT 57.034 33.333 0.00 0.00 0.00 1.28
504 683 9.965902 ATATGGAATTGAGGGTTGTCTATATTC 57.034 33.333 0.00 0.00 0.00 1.75
505 684 7.206789 TGGAATTGAGGGTTGTCTATATTCA 57.793 36.000 0.00 0.00 0.00 2.57
506 685 7.815383 TGGAATTGAGGGTTGTCTATATTCAT 58.185 34.615 0.00 0.00 0.00 2.57
507 686 8.944138 TGGAATTGAGGGTTGTCTATATTCATA 58.056 33.333 0.00 0.00 0.00 2.15
508 687 9.965902 GGAATTGAGGGTTGTCTATATTCATAT 57.034 33.333 0.00 0.00 0.00 1.78
556 735 0.170339 GGGAAAAATCACGGCCGAAG 59.830 55.000 35.90 23.74 0.00 3.79
562 772 0.392998 AATCACGGCCGAAGCAGAAT 60.393 50.000 35.90 11.32 42.56 2.40
577 787 7.094592 CCGAAGCAGAATCTATAGTGACATCTA 60.095 40.741 0.00 0.00 0.00 1.98
578 788 7.748683 CGAAGCAGAATCTATAGTGACATCTAC 59.251 40.741 0.00 0.00 0.00 2.59
582 792 9.226606 GCAGAATCTATAGTGACATCTACTACT 57.773 37.037 0.00 0.00 33.80 2.57
610 820 7.765695 TTAATGGAGCAATTCTCTTGTCTTT 57.234 32.000 0.00 0.00 41.60 2.52
614 824 4.074970 GAGCAATTCTCTTGTCTTTGGGA 58.925 43.478 0.00 0.00 38.78 4.37
615 825 4.473444 AGCAATTCTCTTGTCTTTGGGAA 58.527 39.130 0.00 0.00 0.00 3.97
616 826 4.279420 AGCAATTCTCTTGTCTTTGGGAAC 59.721 41.667 0.00 0.00 0.00 3.62
617 827 4.279420 GCAATTCTCTTGTCTTTGGGAACT 59.721 41.667 0.00 0.00 0.00 3.01
630 867 1.524008 GGGAACTTTGGAACCGGCTG 61.524 60.000 0.00 0.00 0.00 4.85
676 922 2.265904 CCCACGACTCCACGAGACA 61.266 63.158 0.00 0.00 37.03 3.41
677 923 1.210413 CCACGACTCCACGAGACAG 59.790 63.158 0.00 0.00 37.03 3.51
678 924 1.235281 CCACGACTCCACGAGACAGA 61.235 60.000 0.00 0.00 37.03 3.41
679 925 0.110147 CACGACTCCACGAGACAGAC 60.110 60.000 0.00 0.00 37.03 3.51
694 940 0.734889 CAGACAATGCCACGAATCCC 59.265 55.000 0.00 0.00 0.00 3.85
726 972 1.067915 TCGCATCACATCGACAGTTCA 60.068 47.619 0.00 0.00 0.00 3.18
748 994 3.812262 ACGCCAAATGGTATACCCTAAC 58.188 45.455 19.42 3.40 37.57 2.34
840 1093 1.873270 TACCAGCTCACGCACACGAT 61.873 55.000 0.00 0.00 43.93 3.73
866 1128 5.505286 CAAGAAGATCATTGTTGATACCGC 58.495 41.667 0.00 0.00 42.73 5.68
876 1138 4.530710 TGTTGATACCGCAACTCTTAGT 57.469 40.909 0.00 0.00 46.31 2.24
881 1143 1.558233 ACCGCAACTCTTAGTAGGCT 58.442 50.000 0.00 0.00 0.00 4.58
907 1169 3.303791 GGCTTATAAAACATCGCCTTCGG 60.304 47.826 4.37 0.00 34.80 4.30
932 1194 0.603569 ACCACTCACCACGCTTCTAG 59.396 55.000 0.00 0.00 0.00 2.43
1153 1416 3.838271 CCGCGGAGGAAGCTAGCA 61.838 66.667 24.07 0.00 45.00 3.49
1166 1429 3.701604 CTAGCAGGGACGTCGTGGC 62.702 68.421 9.92 12.28 0.00 5.01
1220 1483 5.762218 AGAGGTTTTGTTCATCTCTCAACTG 59.238 40.000 0.00 0.00 29.81 3.16
1232 1499 3.509967 TCTCTCAACTGCTACCGAATTCA 59.490 43.478 6.22 0.00 0.00 2.57
1233 1500 4.160439 TCTCTCAACTGCTACCGAATTCAT 59.840 41.667 6.22 0.00 0.00 2.57
1304 1571 3.372514 GCAGTCTTTTTGCTAGTAGGAGC 59.627 47.826 0.00 0.00 43.16 4.70
1333 1600 0.035439 CCGGCACCTGGATGTTTAGT 60.035 55.000 0.00 0.00 0.00 2.24
1338 1605 4.332828 GGCACCTGGATGTTTAGTAAGTT 58.667 43.478 0.00 0.00 0.00 2.66
1349 1616 9.827411 GGATGTTTAGTAAGTTCATGTCTTTTC 57.173 33.333 10.09 6.02 0.00 2.29
1368 1635 6.940298 TCTTTTCGTTCACCCTTCATTAGATT 59.060 34.615 0.00 0.00 0.00 2.40
1414 1682 3.838244 TGAGTTTGGGCGATATAGCTT 57.162 42.857 7.78 0.00 37.29 3.74
1416 1684 4.523083 TGAGTTTGGGCGATATAGCTTTT 58.477 39.130 7.78 0.00 37.29 2.27
1450 3178 7.310664 CAATCAGCTTGATCTTTATGTGTGTT 58.689 34.615 0.00 0.00 35.76 3.32
1452 3180 4.855388 CAGCTTGATCTTTATGTGTGTTGC 59.145 41.667 0.00 0.00 0.00 4.17
1453 3181 4.520111 AGCTTGATCTTTATGTGTGTTGCA 59.480 37.500 0.00 0.00 0.00 4.08
1534 3262 6.308371 TCCGAGTTTGTTCCTATTGTTTTC 57.692 37.500 0.00 0.00 0.00 2.29
1558 3286 8.791327 TCACTTTATATTGTTTCATCAGCTCA 57.209 30.769 0.00 0.00 0.00 4.26
1559 3287 9.230122 TCACTTTATATTGTTTCATCAGCTCAA 57.770 29.630 0.00 0.00 0.00 3.02
1560 3288 9.844790 CACTTTATATTGTTTCATCAGCTCAAA 57.155 29.630 0.00 0.00 0.00 2.69
1645 3373 5.875359 AGGTGATCGACAACTTCTTATTTCC 59.125 40.000 0.00 0.00 45.14 3.13
1648 3376 7.237173 GTGATCGACAACTTCTTATTTCCAAG 58.763 38.462 0.00 0.00 0.00 3.61
1650 3378 5.305585 TCGACAACTTCTTATTTCCAAGCT 58.694 37.500 0.00 0.00 0.00 3.74
1669 3397 2.863137 GCTGAAGATCCTAAACGAGCAG 59.137 50.000 0.00 0.00 0.00 4.24
1670 3398 3.677424 GCTGAAGATCCTAAACGAGCAGT 60.677 47.826 0.00 0.00 0.00 4.40
1671 3399 4.440250 GCTGAAGATCCTAAACGAGCAGTA 60.440 45.833 0.00 0.00 0.00 2.74
1672 3400 5.737635 GCTGAAGATCCTAAACGAGCAGTAT 60.738 44.000 0.00 0.00 0.00 2.12
1673 3401 6.515200 GCTGAAGATCCTAAACGAGCAGTATA 60.515 42.308 0.00 0.00 0.00 1.47
1674 3402 7.526142 TGAAGATCCTAAACGAGCAGTATAT 57.474 36.000 0.00 0.00 0.00 0.86
1675 3403 8.631480 TGAAGATCCTAAACGAGCAGTATATA 57.369 34.615 0.00 0.00 0.00 0.86
1676 3404 9.244292 TGAAGATCCTAAACGAGCAGTATATAT 57.756 33.333 0.00 0.00 0.00 0.86
1694 3422 9.886132 AGTATATATTAATTAAGAACTGGGCCG 57.114 33.333 3.94 0.00 0.00 6.13
1695 3423 9.662947 GTATATATTAATTAAGAACTGGGCCGT 57.337 33.333 3.94 0.00 0.00 5.68
1697 3425 5.576447 ATTAATTAAGAACTGGGCCGTTG 57.424 39.130 16.44 4.19 0.00 4.10
1698 3426 1.173913 ATTAAGAACTGGGCCGTTGC 58.826 50.000 16.44 9.40 0.00 4.17
1699 3427 0.179015 TTAAGAACTGGGCCGTTGCA 60.179 50.000 16.44 0.00 40.13 4.08
1700 3428 0.037590 TAAGAACTGGGCCGTTGCAT 59.962 50.000 16.44 6.80 40.13 3.96
1701 3429 0.037590 AAGAACTGGGCCGTTGCATA 59.962 50.000 16.44 0.00 40.13 3.14
1702 3430 0.255890 AGAACTGGGCCGTTGCATAT 59.744 50.000 16.44 0.00 40.13 1.78
1703 3431 1.102978 GAACTGGGCCGTTGCATATT 58.897 50.000 16.44 0.00 40.13 1.28
1704 3432 1.065551 GAACTGGGCCGTTGCATATTC 59.934 52.381 16.44 0.48 40.13 1.75
1705 3433 0.255890 ACTGGGCCGTTGCATATTCT 59.744 50.000 0.00 0.00 40.13 2.40
1706 3434 1.340991 ACTGGGCCGTTGCATATTCTT 60.341 47.619 0.00 0.00 40.13 2.52
1707 3435 2.092646 ACTGGGCCGTTGCATATTCTTA 60.093 45.455 0.00 0.00 40.13 2.10
1708 3436 2.948979 CTGGGCCGTTGCATATTCTTAA 59.051 45.455 0.00 0.00 40.13 1.85
1709 3437 2.685897 TGGGCCGTTGCATATTCTTAAC 59.314 45.455 0.00 0.00 40.13 2.01
1710 3438 2.034179 GGGCCGTTGCATATTCTTAACC 59.966 50.000 0.00 0.00 40.13 2.85
1711 3439 2.286772 GGCCGTTGCATATTCTTAACCG 60.287 50.000 0.00 0.00 40.13 4.44
1712 3440 2.353579 GCCGTTGCATATTCTTAACCGT 59.646 45.455 0.00 0.00 37.47 4.83
1713 3441 3.787476 GCCGTTGCATATTCTTAACCGTG 60.787 47.826 0.00 0.00 37.47 4.94
1714 3442 3.372822 CCGTTGCATATTCTTAACCGTGT 59.627 43.478 0.00 0.00 0.00 4.49
1715 3443 4.331137 CGTTGCATATTCTTAACCGTGTG 58.669 43.478 0.00 0.00 0.00 3.82
1716 3444 4.142988 CGTTGCATATTCTTAACCGTGTGT 60.143 41.667 0.00 0.00 0.00 3.72
1717 3445 5.062433 CGTTGCATATTCTTAACCGTGTGTA 59.938 40.000 0.00 0.00 0.00 2.90
1718 3446 6.475207 GTTGCATATTCTTAACCGTGTGTAG 58.525 40.000 0.00 0.00 0.00 2.74
1719 3447 5.726397 TGCATATTCTTAACCGTGTGTAGT 58.274 37.500 0.00 0.00 0.00 2.73
1720 3448 5.579119 TGCATATTCTTAACCGTGTGTAGTG 59.421 40.000 0.00 0.00 0.00 2.74
1721 3449 5.579511 GCATATTCTTAACCGTGTGTAGTGT 59.420 40.000 0.00 0.00 0.00 3.55
1722 3450 6.091713 GCATATTCTTAACCGTGTGTAGTGTT 59.908 38.462 0.00 0.00 0.00 3.32
1723 3451 7.276218 GCATATTCTTAACCGTGTGTAGTGTTA 59.724 37.037 0.00 0.00 0.00 2.41
1724 3452 9.142515 CATATTCTTAACCGTGTGTAGTGTTAA 57.857 33.333 0.00 0.00 33.50 2.01
1725 3453 7.647907 ATTCTTAACCGTGTGTAGTGTTAAG 57.352 36.000 12.47 12.47 45.77 1.85
1726 3454 6.147864 TCTTAACCGTGTGTAGTGTTAAGT 57.852 37.500 16.23 0.00 45.15 2.24
1727 3455 6.572519 TCTTAACCGTGTGTAGTGTTAAGTT 58.427 36.000 16.23 0.00 45.15 2.66
1728 3456 7.041107 TCTTAACCGTGTGTAGTGTTAAGTTT 58.959 34.615 16.23 0.00 45.15 2.66
1729 3457 8.194104 TCTTAACCGTGTGTAGTGTTAAGTTTA 58.806 33.333 16.23 0.93 45.15 2.01
1730 3458 6.833342 AACCGTGTGTAGTGTTAAGTTTAG 57.167 37.500 0.00 0.00 0.00 1.85
1731 3459 6.147864 ACCGTGTGTAGTGTTAAGTTTAGA 57.852 37.500 0.00 0.00 0.00 2.10
1732 3460 5.979517 ACCGTGTGTAGTGTTAAGTTTAGAC 59.020 40.000 0.00 0.00 0.00 2.59
1733 3461 5.978919 CCGTGTGTAGTGTTAAGTTTAGACA 59.021 40.000 0.00 0.00 0.00 3.41
1734 3462 6.476380 CCGTGTGTAGTGTTAAGTTTAGACAA 59.524 38.462 0.00 0.00 0.00 3.18
1735 3463 7.332530 CGTGTGTAGTGTTAAGTTTAGACAAC 58.667 38.462 0.00 0.00 0.00 3.32
1736 3464 7.221452 CGTGTGTAGTGTTAAGTTTAGACAACT 59.779 37.037 0.00 0.00 0.00 3.16
1737 3465 9.520204 GTGTGTAGTGTTAAGTTTAGACAACTA 57.480 33.333 0.00 0.00 0.00 2.24
1753 3481 9.569167 TTAGACAACTATAGAGACACAATTTCG 57.431 33.333 6.78 0.00 0.00 3.46
1754 3482 7.603651 AGACAACTATAGAGACACAATTTCGT 58.396 34.615 6.78 0.00 0.00 3.85
1755 3483 8.088981 AGACAACTATAGAGACACAATTTCGTT 58.911 33.333 6.78 0.00 0.00 3.85
1756 3484 8.603242 ACAACTATAGAGACACAATTTCGTTT 57.397 30.769 6.78 0.00 0.00 3.60
1757 3485 8.709646 ACAACTATAGAGACACAATTTCGTTTC 58.290 33.333 6.78 0.00 0.00 2.78
1758 3486 7.507672 ACTATAGAGACACAATTTCGTTTCG 57.492 36.000 6.78 0.00 0.00 3.46
1759 3487 7.088905 ACTATAGAGACACAATTTCGTTTCGT 58.911 34.615 6.78 0.00 0.00 3.85
1760 3488 4.452890 AGAGACACAATTTCGTTTCGTG 57.547 40.909 0.00 0.00 0.00 4.35
1761 3489 2.964768 GAGACACAATTTCGTTTCGTGC 59.035 45.455 0.00 0.00 0.00 5.34
1762 3490 2.353269 AGACACAATTTCGTTTCGTGCA 59.647 40.909 0.00 0.00 0.00 4.57
1763 3491 3.102276 GACACAATTTCGTTTCGTGCAA 58.898 40.909 0.00 0.00 0.00 4.08
1764 3492 2.849473 ACACAATTTCGTTTCGTGCAAC 59.151 40.909 0.00 0.00 0.00 4.17
1765 3493 3.105203 CACAATTTCGTTTCGTGCAACT 58.895 40.909 0.00 0.00 31.75 3.16
1766 3494 3.545873 CACAATTTCGTTTCGTGCAACTT 59.454 39.130 0.00 0.00 31.75 2.66
1767 3495 3.789224 ACAATTTCGTTTCGTGCAACTTC 59.211 39.130 0.00 0.00 31.75 3.01
1768 3496 3.684103 ATTTCGTTTCGTGCAACTTCA 57.316 38.095 0.00 0.00 31.75 3.02
1769 3497 3.473093 TTTCGTTTCGTGCAACTTCAA 57.527 38.095 0.00 0.00 31.75 2.69
1770 3498 3.473093 TTCGTTTCGTGCAACTTCAAA 57.527 38.095 0.00 0.00 31.75 2.69
1771 3499 2.776330 TCGTTTCGTGCAACTTCAAAC 58.224 42.857 0.00 0.00 31.75 2.93
1772 3500 1.507120 CGTTTCGTGCAACTTCAAACG 59.493 47.619 12.34 12.34 41.81 3.60
1773 3501 2.511879 GTTTCGTGCAACTTCAAACGT 58.488 42.857 0.00 0.00 37.32 3.99
1774 3502 2.445453 TTCGTGCAACTTCAAACGTC 57.555 45.000 0.00 0.00 37.32 4.34
1775 3503 1.360820 TCGTGCAACTTCAAACGTCA 58.639 45.000 0.00 0.00 37.32 4.35
1776 3504 1.937223 TCGTGCAACTTCAAACGTCAT 59.063 42.857 0.00 0.00 37.32 3.06
1777 3505 3.124560 TCGTGCAACTTCAAACGTCATA 58.875 40.909 0.00 0.00 37.32 2.15
1778 3506 3.556365 TCGTGCAACTTCAAACGTCATAA 59.444 39.130 0.00 0.00 37.32 1.90
1779 3507 4.212425 TCGTGCAACTTCAAACGTCATAAT 59.788 37.500 0.00 0.00 37.32 1.28
1780 3508 4.318071 CGTGCAACTTCAAACGTCATAATG 59.682 41.667 0.00 0.00 31.75 1.90
1781 3509 5.212194 GTGCAACTTCAAACGTCATAATGT 58.788 37.500 0.00 0.00 0.00 2.71
1782 3510 5.339611 GTGCAACTTCAAACGTCATAATGTC 59.660 40.000 0.00 0.00 0.00 3.06
1783 3511 4.851558 GCAACTTCAAACGTCATAATGTCC 59.148 41.667 0.00 0.00 0.00 4.02
1784 3512 5.561919 GCAACTTCAAACGTCATAATGTCCA 60.562 40.000 0.00 0.00 0.00 4.02
1785 3513 6.434596 CAACTTCAAACGTCATAATGTCCAA 58.565 36.000 0.00 0.00 0.00 3.53
1786 3514 5.997385 ACTTCAAACGTCATAATGTCCAAC 58.003 37.500 0.00 0.00 0.00 3.77
1787 3515 5.763204 ACTTCAAACGTCATAATGTCCAACT 59.237 36.000 0.00 0.00 0.00 3.16
1788 3516 6.262273 ACTTCAAACGTCATAATGTCCAACTT 59.738 34.615 0.00 0.00 0.00 2.66
1789 3517 5.996219 TCAAACGTCATAATGTCCAACTTG 58.004 37.500 0.00 0.00 0.00 3.16
1790 3518 5.049060 TCAAACGTCATAATGTCCAACTTGG 60.049 40.000 0.74 0.74 39.43 3.61
1791 3519 4.280436 ACGTCATAATGTCCAACTTGGA 57.720 40.909 6.39 6.39 45.98 3.53
1802 3530 4.873746 TCCAACTTGGACAACACAAAAA 57.126 36.364 6.39 0.00 42.67 1.94
1803 3531 5.413309 TCCAACTTGGACAACACAAAAAT 57.587 34.783 6.39 0.00 42.67 1.82
1804 3532 5.174395 TCCAACTTGGACAACACAAAAATG 58.826 37.500 6.39 0.00 42.67 2.32
1805 3533 5.047021 TCCAACTTGGACAACACAAAAATGA 60.047 36.000 6.39 0.00 42.67 2.57
1806 3534 5.063312 CCAACTTGGACAACACAAAAATGAC 59.937 40.000 0.92 0.00 40.96 3.06
1807 3535 5.398603 ACTTGGACAACACAAAAATGACA 57.601 34.783 0.00 0.00 0.00 3.58
1808 3536 5.976458 ACTTGGACAACACAAAAATGACAT 58.024 33.333 0.00 0.00 0.00 3.06
1809 3537 6.042143 ACTTGGACAACACAAAAATGACATC 58.958 36.000 0.00 0.00 0.00 3.06
1810 3538 4.942852 TGGACAACACAAAAATGACATCC 58.057 39.130 0.00 0.00 0.00 3.51
1811 3539 4.403752 TGGACAACACAAAAATGACATCCA 59.596 37.500 0.00 0.00 0.00 3.41
1812 3540 5.070180 TGGACAACACAAAAATGACATCCAT 59.930 36.000 0.00 0.00 36.99 3.41
1813 3541 5.990996 GGACAACACAAAAATGACATCCATT 59.009 36.000 0.00 0.00 46.86 3.16
1861 3589 8.100508 GGCAACTTATAATAGGGAGAATGTTC 57.899 38.462 0.00 0.00 0.00 3.18
1862 3590 7.719633 GGCAACTTATAATAGGGAGAATGTTCA 59.280 37.037 0.00 0.00 0.00 3.18
1863 3591 8.560374 GCAACTTATAATAGGGAGAATGTTCAC 58.440 37.037 0.00 0.00 0.00 3.18
1864 3592 9.838339 CAACTTATAATAGGGAGAATGTTCACT 57.162 33.333 0.00 0.00 34.56 3.41
1871 3599 7.979786 ATAGGGAGAATGTTCACTTTCTAGA 57.020 36.000 7.81 0.00 39.50 2.43
1872 3600 6.688073 AGGGAGAATGTTCACTTTCTAGAA 57.312 37.500 0.00 0.00 39.50 2.10
1873 3601 7.264294 AGGGAGAATGTTCACTTTCTAGAAT 57.736 36.000 5.89 0.00 39.50 2.40
1874 3602 7.694093 AGGGAGAATGTTCACTTTCTAGAATT 58.306 34.615 5.89 0.00 39.50 2.17
1875 3603 8.166726 AGGGAGAATGTTCACTTTCTAGAATTT 58.833 33.333 5.89 0.00 39.50 1.82
1876 3604 8.797438 GGGAGAATGTTCACTTTCTAGAATTTT 58.203 33.333 5.89 0.00 39.50 1.82
1895 3623 4.457834 TTTTTGTGTGTTTACCAGTGGG 57.542 40.909 15.21 0.00 41.29 4.61
1896 3624 2.060050 TTGTGTGTTTACCAGTGGGG 57.940 50.000 15.21 0.00 44.81 4.96
1897 3625 0.183971 TGTGTGTTTACCAGTGGGGG 59.816 55.000 15.21 0.00 42.91 5.40
1898 3626 0.475044 GTGTGTTTACCAGTGGGGGA 59.525 55.000 15.21 0.00 42.91 4.81
1899 3627 1.133730 GTGTGTTTACCAGTGGGGGAA 60.134 52.381 15.21 1.46 42.91 3.97
1900 3628 1.133730 TGTGTTTACCAGTGGGGGAAC 60.134 52.381 15.21 14.61 40.05 3.62
1920 3648 7.754851 GGAACCAATTTACTACTTCCTTTGA 57.245 36.000 0.00 0.00 0.00 2.69
1921 3649 8.349568 GGAACCAATTTACTACTTCCTTTGAT 57.650 34.615 0.00 0.00 0.00 2.57
1922 3650 8.459635 GGAACCAATTTACTACTTCCTTTGATC 58.540 37.037 0.00 0.00 0.00 2.92
1923 3651 7.939784 ACCAATTTACTACTTCCTTTGATCC 57.060 36.000 0.00 0.00 0.00 3.36
1924 3652 7.466804 ACCAATTTACTACTTCCTTTGATCCA 58.533 34.615 0.00 0.00 0.00 3.41
1925 3653 8.116026 ACCAATTTACTACTTCCTTTGATCCAT 58.884 33.333 0.00 0.00 0.00 3.41
1926 3654 9.627123 CCAATTTACTACTTCCTTTGATCCATA 57.373 33.333 0.00 0.00 0.00 2.74
1933 3661 9.838339 ACTACTTCCTTTGATCCATAATAAGTG 57.162 33.333 0.00 0.00 0.00 3.16
1934 3662 7.573968 ACTTCCTTTGATCCATAATAAGTGC 57.426 36.000 0.00 0.00 0.00 4.40
1935 3663 6.547510 ACTTCCTTTGATCCATAATAAGTGCC 59.452 38.462 0.00 0.00 0.00 5.01
1936 3664 6.012337 TCCTTTGATCCATAATAAGTGCCA 57.988 37.500 0.00 0.00 0.00 4.92
1937 3665 6.613699 TCCTTTGATCCATAATAAGTGCCAT 58.386 36.000 0.00 0.00 0.00 4.40
1938 3666 6.491062 TCCTTTGATCCATAATAAGTGCCATG 59.509 38.462 0.00 0.00 0.00 3.66
1939 3667 6.491062 CCTTTGATCCATAATAAGTGCCATGA 59.509 38.462 0.00 0.00 0.00 3.07
1940 3668 7.177921 CCTTTGATCCATAATAAGTGCCATGAT 59.822 37.037 0.00 0.00 0.00 2.45
1941 3669 8.481492 TTTGATCCATAATAAGTGCCATGATT 57.519 30.769 0.00 0.00 0.00 2.57
1942 3670 8.481492 TTGATCCATAATAAGTGCCATGATTT 57.519 30.769 0.00 0.00 0.00 2.17
1943 3671 8.481492 TGATCCATAATAAGTGCCATGATTTT 57.519 30.769 0.00 0.00 0.00 1.82
1944 3672 8.926374 TGATCCATAATAAGTGCCATGATTTTT 58.074 29.630 0.00 0.00 0.00 1.94
2023 3751 4.280436 TCAAAGCCGAAGATCCTAAACA 57.720 40.909 0.00 0.00 0.00 2.83
2024 3752 4.647611 TCAAAGCCGAAGATCCTAAACAA 58.352 39.130 0.00 0.00 0.00 2.83
2030 3758 4.574828 GCCGAAGATCCTAAACAAGCATTA 59.425 41.667 0.00 0.00 0.00 1.90
2117 4729 4.116961 AGAGACACAATTTCGTTTCGTGA 58.883 39.130 0.00 0.00 0.00 4.35
2131 4743 3.661758 TTCGTGAAACTTCAAACGTCC 57.338 42.857 0.00 0.00 39.21 4.79
2138 4750 5.907391 GTGAAACTTCAAACGTCCTAATGTG 59.093 40.000 0.00 0.00 39.21 3.21
2232 4845 5.620098 AAATCTTTTCTTTTTGTGACGCG 57.380 34.783 3.53 3.53 0.00 6.01
2241 4854 1.024046 TTTGTGACGCGCTATGGCAT 61.024 50.000 5.73 4.88 38.60 4.40
2272 4885 2.168503 CGCGCGTTGCTATTGGGTA 61.169 57.895 24.19 0.00 43.27 3.69
2294 4907 1.250328 TCCACTTTGCAAGGCTGATG 58.750 50.000 8.71 0.00 0.00 3.07
2299 4912 0.592637 TTTGCAAGGCTGATGTCACG 59.407 50.000 0.00 0.00 0.00 4.35
2433 5243 2.932614 CAGTGGGAGAAGCAATTACTCG 59.067 50.000 0.00 0.00 0.00 4.18
2499 6901 4.162320 ACTTCCTAGCAGCTAATAAGTGCA 59.838 41.667 20.73 0.00 39.80 4.57
2505 6907 7.032580 CCTAGCAGCTAATAAGTGCAGTATAG 58.967 42.308 3.09 0.00 39.80 1.31
2615 7087 2.872858 AGCAGAAACGAAAGAACAGGAC 59.127 45.455 0.00 0.00 0.00 3.85
2671 7143 3.733960 GAAGGAAACGGTGGCGGC 61.734 66.667 0.00 0.00 0.00 6.53
2873 7347 3.361977 GCGCTTCCCGGCTTTTGA 61.362 61.111 0.00 0.00 37.44 2.69
2882 7356 3.537580 TCCCGGCTTTTGATGTATACAC 58.462 45.455 7.96 3.26 0.00 2.90
2900 7374 2.942376 ACACACAGTCGCTTCATTTTCA 59.058 40.909 0.00 0.00 0.00 2.69
2926 7400 0.620556 ATTGTTGGCTCGGAGGATGT 59.379 50.000 7.20 0.00 0.00 3.06
2933 7407 1.001406 GGCTCGGAGGATGTAATGGAG 59.999 57.143 7.20 0.00 0.00 3.86
2960 7434 4.693566 TGAATTGTCCTTCGTTGATGTACC 59.306 41.667 0.00 0.00 0.00 3.34
2961 7435 2.754946 TGTCCTTCGTTGATGTACCC 57.245 50.000 0.00 0.00 0.00 3.69
2962 7436 2.253610 TGTCCTTCGTTGATGTACCCT 58.746 47.619 0.00 0.00 0.00 4.34
2963 7437 2.028476 TGTCCTTCGTTGATGTACCCTG 60.028 50.000 0.00 0.00 0.00 4.45
2964 7438 2.028385 GTCCTTCGTTGATGTACCCTGT 60.028 50.000 0.00 0.00 0.00 4.00
2965 7439 2.635915 TCCTTCGTTGATGTACCCTGTT 59.364 45.455 0.00 0.00 0.00 3.16
2966 7440 2.742053 CCTTCGTTGATGTACCCTGTTG 59.258 50.000 0.00 0.00 0.00 3.33
2967 7441 3.399330 CTTCGTTGATGTACCCTGTTGT 58.601 45.455 0.00 0.00 0.00 3.32
2972 7448 3.678056 TGATGTACCCTGTTGTCTGTC 57.322 47.619 0.00 0.00 0.00 3.51
2984 7460 3.260632 TGTTGTCTGTCTTATGCTGCCTA 59.739 43.478 0.00 0.00 0.00 3.93
2992 7468 6.707608 TCTGTCTTATGCTGCCTAAACATATG 59.292 38.462 0.00 0.00 0.00 1.78
2998 7474 4.790937 TGCTGCCTAAACATATGGAATGA 58.209 39.130 7.80 0.00 0.00 2.57
3079 7555 0.037232 CTCACGTCAAAGGAGACCCC 60.037 60.000 0.00 0.00 35.07 4.95
3090 7566 4.698625 AGACCCCTCCGGAAGCGT 62.699 66.667 5.23 0.00 34.64 5.07
3144 11980 4.939368 CGAAACCCCACACGCCCA 62.939 66.667 0.00 0.00 0.00 5.36
3267 12104 5.501252 CGAACGAAAAACGAGGAAGAAGAAA 60.501 40.000 0.00 0.00 45.77 2.52
3354 12194 1.129811 CAATCGGCCGTCACCTTTTAC 59.870 52.381 27.15 0.00 0.00 2.01
3475 12316 3.309582 GGATGTCCGGCTCAAGGA 58.690 61.111 0.00 0.00 34.99 3.36
3484 12325 1.153349 GGCTCAAGGACCGGATGAC 60.153 63.158 9.46 0.00 0.00 3.06
3550 12391 2.906354 AGAATCCACATACGACCTTGC 58.094 47.619 0.00 0.00 0.00 4.01
3570 12412 6.692681 CCTTGCATTTGGACGTTTCTTATATG 59.307 38.462 0.00 0.00 0.00 1.78
3692 12534 2.353579 CAGAAAAACTTGTCCGGACGTT 59.646 45.455 28.70 23.26 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.202756 GAAGATCGCCTTCGCCGT 60.203 61.111 2.46 0.00 41.54 5.68
60 61 4.308458 CCGCACCACCGTCCTTCA 62.308 66.667 0.00 0.00 0.00 3.02
102 103 7.855904 CCAGCTAATAAAACCGTGATCAATAAC 59.144 37.037 0.00 0.00 0.00 1.89
131 132 8.862325 TCATCAAGCTAAATAAGACTTCCAAA 57.138 30.769 0.00 0.00 0.00 3.28
160 161 1.281925 AATCCCCTCCCAAGCATCGT 61.282 55.000 0.00 0.00 0.00 3.73
174 175 5.584551 ACCATCCTGACCTATAAAATCCC 57.415 43.478 0.00 0.00 0.00 3.85
223 224 1.593750 AAGAGCGCGATCATCCTGC 60.594 57.895 27.74 0.00 0.00 4.85
224 225 1.220169 CCAAGAGCGCGATCATCCTG 61.220 60.000 27.74 16.54 0.00 3.86
244 245 2.943033 CCGTTAAACCATCCTAAGGCTG 59.057 50.000 0.00 0.00 0.00 4.85
272 273 1.379176 TCTGACCCTCTCCGCTCTG 60.379 63.158 0.00 0.00 0.00 3.35
291 292 1.202568 GCATGCCTATTTTTGCCTCCC 60.203 52.381 6.36 0.00 0.00 4.30
312 313 1.130938 TCAGCTACAAACGCATGCATG 59.869 47.619 22.70 22.70 0.00 4.06
313 314 1.452110 TCAGCTACAAACGCATGCAT 58.548 45.000 19.57 0.00 0.00 3.96
314 315 1.452110 ATCAGCTACAAACGCATGCA 58.548 45.000 19.57 0.00 0.00 3.96
315 316 2.549633 AATCAGCTACAAACGCATGC 57.450 45.000 7.91 7.91 0.00 4.06
316 317 5.052172 GCAAATAATCAGCTACAAACGCATG 60.052 40.000 0.00 0.00 0.00 4.06
317 318 5.036737 GCAAATAATCAGCTACAAACGCAT 58.963 37.500 0.00 0.00 0.00 4.73
318 319 4.411327 GCAAATAATCAGCTACAAACGCA 58.589 39.130 0.00 0.00 0.00 5.24
319 320 3.791353 GGCAAATAATCAGCTACAAACGC 59.209 43.478 0.00 0.00 0.00 4.84
320 321 4.351192 GGGCAAATAATCAGCTACAAACG 58.649 43.478 0.00 0.00 0.00 3.60
321 322 4.351192 CGGGCAAATAATCAGCTACAAAC 58.649 43.478 0.00 0.00 0.00 2.93
323 324 2.948979 CCGGGCAAATAATCAGCTACAA 59.051 45.455 0.00 0.00 0.00 2.41
325 326 2.572290 ACCGGGCAAATAATCAGCTAC 58.428 47.619 6.32 0.00 0.00 3.58
326 327 3.290948 AACCGGGCAAATAATCAGCTA 57.709 42.857 6.32 0.00 0.00 3.32
331 354 3.020984 TGAGGAAACCGGGCAAATAATC 58.979 45.455 6.32 0.00 0.00 1.75
335 358 1.474330 GATGAGGAAACCGGGCAAAT 58.526 50.000 6.32 0.00 0.00 2.32
353 376 2.829720 ACAGTTACATGCGTCCTAAGGA 59.170 45.455 0.00 0.00 0.00 3.36
357 380 3.945981 TTGACAGTTACATGCGTCCTA 57.054 42.857 0.00 0.00 0.00 2.94
358 381 2.831685 TTGACAGTTACATGCGTCCT 57.168 45.000 0.00 0.00 0.00 3.85
359 382 3.889196 TTTTGACAGTTACATGCGTCC 57.111 42.857 0.00 0.00 0.00 4.79
404 583 1.314730 GTTCCTCTCACCCGCAAAAA 58.685 50.000 0.00 0.00 0.00 1.94
406 585 1.301401 CGTTCCTCTCACCCGCAAA 60.301 57.895 0.00 0.00 0.00 3.68
407 586 2.342279 CGTTCCTCTCACCCGCAA 59.658 61.111 0.00 0.00 0.00 4.85
408 587 2.915659 ACGTTCCTCTCACCCGCA 60.916 61.111 0.00 0.00 0.00 5.69
409 588 1.870055 TACACGTTCCTCTCACCCGC 61.870 60.000 0.00 0.00 0.00 6.13
410 589 0.109412 GTACACGTTCCTCTCACCCG 60.109 60.000 0.00 0.00 0.00 5.28
411 590 1.201880 GAGTACACGTTCCTCTCACCC 59.798 57.143 0.00 0.00 0.00 4.61
412 591 1.884579 TGAGTACACGTTCCTCTCACC 59.115 52.381 0.00 0.00 31.51 4.02
413 592 2.931228 GTGAGTACACGTTCCTCTCAC 58.069 52.381 17.65 17.65 44.71 3.51
414 593 1.884579 GGTGAGTACACGTTCCTCTCA 59.115 52.381 0.00 6.46 46.77 3.27
415 594 1.884579 TGGTGAGTACACGTTCCTCTC 59.115 52.381 0.00 4.35 46.77 3.20
416 595 1.887198 CTGGTGAGTACACGTTCCTCT 59.113 52.381 0.00 0.00 46.77 3.69
417 596 1.067776 CCTGGTGAGTACACGTTCCTC 60.068 57.143 0.00 0.00 46.77 3.71
418 597 0.966920 CCTGGTGAGTACACGTTCCT 59.033 55.000 0.00 0.00 46.77 3.36
419 598 0.669625 GCCTGGTGAGTACACGTTCC 60.670 60.000 0.00 0.00 46.77 3.62
420 599 0.032952 TGCCTGGTGAGTACACGTTC 59.967 55.000 0.00 0.00 46.77 3.95
421 600 0.685097 ATGCCTGGTGAGTACACGTT 59.315 50.000 0.00 0.00 46.77 3.99
422 601 0.037326 CATGCCTGGTGAGTACACGT 60.037 55.000 0.00 0.00 46.77 4.49
423 602 1.361668 GCATGCCTGGTGAGTACACG 61.362 60.000 6.36 0.00 46.77 4.49
424 603 0.321564 TGCATGCCTGGTGAGTACAC 60.322 55.000 16.68 0.00 45.27 2.90
425 604 0.620030 ATGCATGCCTGGTGAGTACA 59.380 50.000 16.68 0.00 0.00 2.90
426 605 1.019673 CATGCATGCCTGGTGAGTAC 58.980 55.000 14.93 0.00 0.00 2.73
427 606 3.482147 CATGCATGCCTGGTGAGTA 57.518 52.632 14.93 0.00 0.00 2.59
428 607 4.331622 CATGCATGCCTGGTGAGT 57.668 55.556 14.93 0.00 0.00 3.41
435 614 8.831490 GTGAAACAAGATATGCATGCATGCCT 62.831 42.308 40.69 34.57 45.30 4.75
436 615 6.747379 GTGAAACAAGATATGCATGCATGCC 61.747 44.000 40.69 28.04 45.30 4.40
437 616 4.208460 GTGAAACAAGATATGCATGCATGC 59.792 41.667 38.71 38.71 45.80 4.06
438 617 5.458779 CAGTGAAACAAGATATGCATGCATG 59.541 40.000 37.43 26.22 41.43 4.06
439 618 5.588240 CAGTGAAACAAGATATGCATGCAT 58.412 37.500 33.92 33.92 41.43 3.96
440 619 4.675933 GCAGTGAAACAAGATATGCATGCA 60.676 41.667 25.04 25.04 41.43 3.96
441 620 3.795101 GCAGTGAAACAAGATATGCATGC 59.205 43.478 11.82 11.82 41.43 4.06
442 621 5.244785 AGCAGTGAAACAAGATATGCATG 57.755 39.130 10.16 0.00 41.43 4.06
443 622 5.008415 GCTAGCAGTGAAACAAGATATGCAT 59.992 40.000 10.63 3.79 41.43 3.96
444 623 4.333649 GCTAGCAGTGAAACAAGATATGCA 59.666 41.667 10.63 0.00 41.43 3.96
445 624 4.333649 TGCTAGCAGTGAAACAAGATATGC 59.666 41.667 14.93 0.00 41.43 3.14
446 625 6.563567 CGATGCTAGCAGTGAAACAAGATATG 60.564 42.308 23.89 0.00 41.43 1.78
447 626 5.464722 CGATGCTAGCAGTGAAACAAGATAT 59.535 40.000 23.89 0.00 41.43 1.63
448 627 4.805719 CGATGCTAGCAGTGAAACAAGATA 59.194 41.667 23.89 0.00 41.43 1.98
449 628 3.620374 CGATGCTAGCAGTGAAACAAGAT 59.380 43.478 23.89 0.59 41.43 2.40
450 629 2.995939 CGATGCTAGCAGTGAAACAAGA 59.004 45.455 23.89 0.00 41.43 3.02
451 630 2.738846 ACGATGCTAGCAGTGAAACAAG 59.261 45.455 23.89 8.26 41.43 3.16
452 631 2.766313 ACGATGCTAGCAGTGAAACAA 58.234 42.857 23.89 0.00 41.43 2.83
453 632 2.455674 ACGATGCTAGCAGTGAAACA 57.544 45.000 23.89 0.00 41.43 2.83
454 633 3.678072 TGTTACGATGCTAGCAGTGAAAC 59.322 43.478 23.89 21.73 0.00 2.78
455 634 3.920446 TGTTACGATGCTAGCAGTGAAA 58.080 40.909 23.89 11.83 0.00 2.69
456 635 3.192633 TCTGTTACGATGCTAGCAGTGAA 59.807 43.478 23.89 11.30 0.00 3.18
457 636 2.752903 TCTGTTACGATGCTAGCAGTGA 59.247 45.455 23.89 10.38 0.00 3.41
458 637 3.150848 TCTGTTACGATGCTAGCAGTG 57.849 47.619 23.89 19.12 0.00 3.66
459 638 5.465051 CATATCTGTTACGATGCTAGCAGT 58.535 41.667 23.89 18.17 0.00 4.40
460 639 4.861462 CCATATCTGTTACGATGCTAGCAG 59.139 45.833 23.89 12.94 0.00 4.24
461 640 4.522789 TCCATATCTGTTACGATGCTAGCA 59.477 41.667 21.85 21.85 0.00 3.49
462 641 5.060662 TCCATATCTGTTACGATGCTAGC 57.939 43.478 8.10 8.10 0.00 3.42
463 642 7.814587 TCAATTCCATATCTGTTACGATGCTAG 59.185 37.037 0.00 0.00 0.00 3.42
464 643 7.666623 TCAATTCCATATCTGTTACGATGCTA 58.333 34.615 0.00 0.00 0.00 3.49
465 644 6.524734 TCAATTCCATATCTGTTACGATGCT 58.475 36.000 0.00 0.00 0.00 3.79
466 645 6.128445 CCTCAATTCCATATCTGTTACGATGC 60.128 42.308 0.00 0.00 0.00 3.91
467 646 6.369890 CCCTCAATTCCATATCTGTTACGATG 59.630 42.308 0.00 0.00 0.00 3.84
468 647 6.043243 ACCCTCAATTCCATATCTGTTACGAT 59.957 38.462 0.00 0.00 0.00 3.73
469 648 5.365605 ACCCTCAATTCCATATCTGTTACGA 59.634 40.000 0.00 0.00 0.00 3.43
470 649 5.611374 ACCCTCAATTCCATATCTGTTACG 58.389 41.667 0.00 0.00 0.00 3.18
481 660 7.206789 TGAATATAGACAACCCTCAATTCCA 57.793 36.000 0.00 0.00 0.00 3.53
509 688 9.793259 TCATAAAATTTCAGAAAGACCTACACT 57.207 29.630 1.28 0.00 0.00 3.55
546 725 0.179111 TAGATTCTGCTTCGGCCGTG 60.179 55.000 27.15 19.90 40.91 4.94
548 727 2.029828 ACTATAGATTCTGCTTCGGCCG 60.030 50.000 22.12 22.12 40.91 6.13
556 735 9.226606 AGTAGTAGATGTCACTATAGATTCTGC 57.773 37.037 6.78 4.84 31.46 4.26
582 792 9.466497 AGACAAGAGAATTGCTCCATTAATTAA 57.534 29.630 0.00 0.00 45.10 1.40
605 815 2.034179 CGGTTCCAAAGTTCCCAAAGAC 59.966 50.000 0.00 0.00 0.00 3.01
610 820 1.529713 GCCGGTTCCAAAGTTCCCA 60.530 57.895 1.90 0.00 0.00 4.37
614 824 1.133915 TCTTCAGCCGGTTCCAAAGTT 60.134 47.619 1.90 0.00 0.00 2.66
615 825 0.472471 TCTTCAGCCGGTTCCAAAGT 59.528 50.000 1.90 0.00 0.00 2.66
616 826 1.470098 CATCTTCAGCCGGTTCCAAAG 59.530 52.381 1.90 0.59 0.00 2.77
617 827 1.073125 TCATCTTCAGCCGGTTCCAAA 59.927 47.619 1.90 0.00 0.00 3.28
630 867 6.089150 GCACTGCAATTTCTTTCTTCATCTTC 59.911 38.462 0.00 0.00 0.00 2.87
676 922 0.394352 GGGGATTCGTGGCATTGTCT 60.394 55.000 0.00 0.00 0.00 3.41
677 923 1.714899 CGGGGATTCGTGGCATTGTC 61.715 60.000 0.00 0.00 0.00 3.18
678 924 1.748879 CGGGGATTCGTGGCATTGT 60.749 57.895 0.00 0.00 0.00 2.71
679 925 1.748879 ACGGGGATTCGTGGCATTG 60.749 57.895 0.00 0.00 42.21 2.82
726 972 4.201657 GTTAGGGTATACCATTTGGCGTT 58.798 43.478 23.33 0.38 43.89 4.84
800 1046 1.583495 GGTTGGAACTAGCGGCAACC 61.583 60.000 1.45 0.00 35.87 3.77
840 1093 6.479990 CGGTATCAACAATGATCTTCTTGCTA 59.520 38.462 0.00 0.00 42.75 3.49
866 1128 2.898705 CCTGCAGCCTACTAAGAGTTG 58.101 52.381 8.66 0.00 0.00 3.16
876 1138 4.229304 TGTTTTATAAGCCTGCAGCCTA 57.771 40.909 8.66 0.00 45.47 3.93
881 1143 2.357637 GGCGATGTTTTATAAGCCTGCA 59.642 45.455 4.37 0.00 41.21 4.41
907 1169 1.772063 GCGTGGTGAGTGGTGACAAC 61.772 60.000 0.00 0.00 46.06 3.32
932 1194 0.949397 AAGAAACGGCGGAGGAAAAC 59.051 50.000 13.24 0.00 0.00 2.43
991 1254 1.272704 GCAGTTCCCCATCCTTCCTTT 60.273 52.381 0.00 0.00 0.00 3.11
1166 1429 1.541310 TACCTCACTCTGTTGGCCGG 61.541 60.000 0.00 0.00 0.00 6.13
1170 1433 0.389948 GCCGTACCTCACTCTGTTGG 60.390 60.000 0.00 0.00 0.00 3.77
1220 1483 4.323553 ACTCCTACATGAATTCGGTAGC 57.676 45.455 22.36 0.00 34.55 3.58
1232 1499 8.527810 CAGAGAAGAAAAGAAGTACTCCTACAT 58.472 37.037 0.00 0.00 0.00 2.29
1233 1500 7.524038 GCAGAGAAGAAAAGAAGTACTCCTACA 60.524 40.741 0.00 0.00 0.00 2.74
1333 1600 5.237779 GGGTGAACGAAAAGACATGAACTTA 59.762 40.000 0.00 0.00 0.00 2.24
1338 1605 3.485463 AGGGTGAACGAAAAGACATGA 57.515 42.857 0.00 0.00 0.00 3.07
1424 1692 5.742453 CACACATAAAGATCAAGCTGATTGC 59.258 40.000 0.00 0.00 37.20 3.56
1426 1694 7.310664 CAACACACATAAAGATCAAGCTGATT 58.689 34.615 0.00 0.00 37.20 2.57
1427 1695 6.624423 GCAACACACATAAAGATCAAGCTGAT 60.624 38.462 0.00 0.00 40.34 2.90
1428 1696 5.335113 GCAACACACATAAAGATCAAGCTGA 60.335 40.000 0.00 0.00 0.00 4.26
1429 1697 4.855388 GCAACACACATAAAGATCAAGCTG 59.145 41.667 0.00 0.00 0.00 4.24
1430 1698 4.520111 TGCAACACACATAAAGATCAAGCT 59.480 37.500 0.00 0.00 0.00 3.74
1450 3178 1.726865 CGTCAAAGGCTTGTGTGCA 59.273 52.632 0.00 0.00 33.94 4.57
1452 3180 0.381801 AAGCGTCAAAGGCTTGTGTG 59.618 50.000 0.00 0.00 46.17 3.82
1453 3181 2.793831 AAGCGTCAAAGGCTTGTGT 58.206 47.368 0.00 0.00 46.17 3.72
1458 3186 0.381801 CACACAAAGCGTCAAAGGCT 59.618 50.000 0.00 0.00 41.64 4.58
1534 3262 9.844790 TTTGAGCTGATGAAACAATATAAAGTG 57.155 29.630 0.00 0.00 0.00 3.16
1627 3355 5.179368 CAGCTTGGAAATAAGAAGTTGTCGA 59.821 40.000 0.00 0.00 0.00 4.20
1631 3359 7.206981 TCTTCAGCTTGGAAATAAGAAGTTG 57.793 36.000 0.00 0.00 32.22 3.16
1634 3362 6.827762 AGGATCTTCAGCTTGGAAATAAGAAG 59.172 38.462 0.00 0.00 31.85 2.85
1645 3373 3.308323 GCTCGTTTAGGATCTTCAGCTTG 59.692 47.826 0.00 0.00 0.00 4.01
1648 3376 2.863137 CTGCTCGTTTAGGATCTTCAGC 59.137 50.000 0.00 0.00 0.00 4.26
1650 3378 5.854010 ATACTGCTCGTTTAGGATCTTCA 57.146 39.130 0.00 0.00 0.00 3.02
1669 3397 9.662947 ACGGCCCAGTTCTTAATTAATATATAC 57.337 33.333 0.00 0.00 0.00 1.47
1671 3399 9.010029 CAACGGCCCAGTTCTTAATTAATATAT 57.990 33.333 0.00 0.00 30.96 0.86
1672 3400 7.040961 GCAACGGCCCAGTTCTTAATTAATATA 60.041 37.037 0.00 0.00 30.96 0.86
1673 3401 6.238925 GCAACGGCCCAGTTCTTAATTAATAT 60.239 38.462 0.00 0.00 30.96 1.28
1674 3402 5.066764 GCAACGGCCCAGTTCTTAATTAATA 59.933 40.000 0.00 0.00 30.96 0.98
1675 3403 4.142249 GCAACGGCCCAGTTCTTAATTAAT 60.142 41.667 0.00 0.00 30.96 1.40
1676 3404 3.191791 GCAACGGCCCAGTTCTTAATTAA 59.808 43.478 0.00 0.00 30.96 1.40
1677 3405 2.750712 GCAACGGCCCAGTTCTTAATTA 59.249 45.455 0.00 0.00 30.96 1.40
1678 3406 1.544246 GCAACGGCCCAGTTCTTAATT 59.456 47.619 0.00 0.00 30.96 1.40
1679 3407 1.173913 GCAACGGCCCAGTTCTTAAT 58.826 50.000 0.00 0.00 30.96 1.40
1680 3408 0.179015 TGCAACGGCCCAGTTCTTAA 60.179 50.000 0.00 0.00 40.13 1.85
1681 3409 0.037590 ATGCAACGGCCCAGTTCTTA 59.962 50.000 0.00 0.00 40.13 2.10
1682 3410 0.037590 TATGCAACGGCCCAGTTCTT 59.962 50.000 0.00 0.00 40.13 2.52
1683 3411 0.255890 ATATGCAACGGCCCAGTTCT 59.744 50.000 0.00 0.00 40.13 3.01
1684 3412 1.065551 GAATATGCAACGGCCCAGTTC 59.934 52.381 0.00 0.00 40.13 3.01
1685 3413 1.102978 GAATATGCAACGGCCCAGTT 58.897 50.000 0.00 0.00 40.13 3.16
1686 3414 0.255890 AGAATATGCAACGGCCCAGT 59.744 50.000 0.00 0.00 40.13 4.00
1687 3415 1.392589 AAGAATATGCAACGGCCCAG 58.607 50.000 0.00 0.00 40.13 4.45
1688 3416 2.685897 GTTAAGAATATGCAACGGCCCA 59.314 45.455 0.00 0.00 40.13 5.36
1689 3417 2.034179 GGTTAAGAATATGCAACGGCCC 59.966 50.000 0.00 0.00 40.13 5.80
1690 3418 2.286772 CGGTTAAGAATATGCAACGGCC 60.287 50.000 0.00 0.00 40.13 6.13
1691 3419 2.353579 ACGGTTAAGAATATGCAACGGC 59.646 45.455 0.00 0.00 41.68 5.68
1692 3420 3.372822 ACACGGTTAAGAATATGCAACGG 59.627 43.478 0.00 0.00 0.00 4.44
1693 3421 4.142988 ACACACGGTTAAGAATATGCAACG 60.143 41.667 0.00 0.00 0.00 4.10
1694 3422 5.291293 ACACACGGTTAAGAATATGCAAC 57.709 39.130 0.00 0.00 0.00 4.17
1695 3423 6.091577 CACTACACACGGTTAAGAATATGCAA 59.908 38.462 0.00 0.00 0.00 4.08
1696 3424 5.579119 CACTACACACGGTTAAGAATATGCA 59.421 40.000 0.00 0.00 0.00 3.96
1697 3425 5.579511 ACACTACACACGGTTAAGAATATGC 59.420 40.000 0.00 0.00 0.00 3.14
1698 3426 7.591006 AACACTACACACGGTTAAGAATATG 57.409 36.000 0.00 0.00 0.00 1.78
1705 3433 8.194104 TCTAAACTTAACACTACACACGGTTAA 58.806 33.333 0.00 0.00 35.24 2.01
1706 3434 7.647715 GTCTAAACTTAACACTACACACGGTTA 59.352 37.037 0.00 0.00 0.00 2.85
1707 3435 6.476706 GTCTAAACTTAACACTACACACGGTT 59.523 38.462 0.00 0.00 0.00 4.44
1708 3436 5.979517 GTCTAAACTTAACACTACACACGGT 59.020 40.000 0.00 0.00 0.00 4.83
1709 3437 5.978919 TGTCTAAACTTAACACTACACACGG 59.021 40.000 0.00 0.00 0.00 4.94
1710 3438 7.221452 AGTTGTCTAAACTTAACACTACACACG 59.779 37.037 0.00 0.00 0.00 4.49
1711 3439 8.416485 AGTTGTCTAAACTTAACACTACACAC 57.584 34.615 0.00 0.00 0.00 3.82
1727 3455 9.569167 CGAAATTGTGTCTCTATAGTTGTCTAA 57.431 33.333 0.00 0.00 0.00 2.10
1728 3456 8.737175 ACGAAATTGTGTCTCTATAGTTGTCTA 58.263 33.333 0.00 0.00 0.00 2.59
1729 3457 7.603651 ACGAAATTGTGTCTCTATAGTTGTCT 58.396 34.615 0.00 0.00 0.00 3.41
1730 3458 7.813852 ACGAAATTGTGTCTCTATAGTTGTC 57.186 36.000 0.00 0.00 0.00 3.18
1731 3459 8.603242 AAACGAAATTGTGTCTCTATAGTTGT 57.397 30.769 0.00 0.00 0.00 3.32
1732 3460 7.893236 CGAAACGAAATTGTGTCTCTATAGTTG 59.107 37.037 0.00 0.00 0.00 3.16
1733 3461 7.597743 ACGAAACGAAATTGTGTCTCTATAGTT 59.402 33.333 0.00 0.00 0.00 2.24
1734 3462 7.061905 CACGAAACGAAATTGTGTCTCTATAGT 59.938 37.037 0.00 0.00 0.00 2.12
1735 3463 7.384124 CACGAAACGAAATTGTGTCTCTATAG 58.616 38.462 0.00 0.00 0.00 1.31
1736 3464 6.183360 GCACGAAACGAAATTGTGTCTCTATA 60.183 38.462 0.00 0.00 33.23 1.31
1737 3465 5.389516 GCACGAAACGAAATTGTGTCTCTAT 60.390 40.000 0.00 0.00 33.23 1.98
1738 3466 4.084745 GCACGAAACGAAATTGTGTCTCTA 60.085 41.667 0.00 0.00 33.23 2.43
1739 3467 3.303132 GCACGAAACGAAATTGTGTCTCT 60.303 43.478 0.00 0.00 33.23 3.10
1740 3468 2.964768 GCACGAAACGAAATTGTGTCTC 59.035 45.455 0.00 0.00 33.23 3.36
1741 3469 2.353269 TGCACGAAACGAAATTGTGTCT 59.647 40.909 0.00 0.00 33.23 3.41
1742 3470 2.710760 TGCACGAAACGAAATTGTGTC 58.289 42.857 0.00 0.00 33.23 3.67
1743 3471 2.834574 TGCACGAAACGAAATTGTGT 57.165 40.000 0.00 0.00 33.23 3.72
1744 3472 3.105203 AGTTGCACGAAACGAAATTGTG 58.895 40.909 0.00 0.00 35.13 3.33
1745 3473 3.414549 AGTTGCACGAAACGAAATTGT 57.585 38.095 0.00 0.00 35.13 2.71
1746 3474 3.788694 TGAAGTTGCACGAAACGAAATTG 59.211 39.130 0.00 0.00 35.13 2.32
1747 3475 4.022464 TGAAGTTGCACGAAACGAAATT 57.978 36.364 0.00 0.00 35.13 1.82
1748 3476 3.684103 TGAAGTTGCACGAAACGAAAT 57.316 38.095 0.00 0.00 35.13 2.17
1749 3477 3.473093 TTGAAGTTGCACGAAACGAAA 57.527 38.095 0.00 0.00 35.13 3.46
1750 3478 3.165124 GTTTGAAGTTGCACGAAACGAA 58.835 40.909 0.00 0.00 35.13 3.85
1751 3479 2.776330 GTTTGAAGTTGCACGAAACGA 58.224 42.857 0.00 0.00 35.13 3.85
1752 3480 1.507120 CGTTTGAAGTTGCACGAAACG 59.493 47.619 11.04 11.04 41.80 3.60
1753 3481 2.511879 ACGTTTGAAGTTGCACGAAAC 58.488 42.857 0.00 0.00 36.48 2.78
1754 3482 2.159824 TGACGTTTGAAGTTGCACGAAA 59.840 40.909 0.00 0.00 36.48 3.46
1755 3483 1.732809 TGACGTTTGAAGTTGCACGAA 59.267 42.857 0.00 0.00 36.48 3.85
1756 3484 1.360820 TGACGTTTGAAGTTGCACGA 58.639 45.000 0.00 0.00 36.48 4.35
1757 3485 2.383298 ATGACGTTTGAAGTTGCACG 57.617 45.000 0.00 0.00 38.62 5.34
1758 3486 5.212194 ACATTATGACGTTTGAAGTTGCAC 58.788 37.500 0.00 0.00 0.00 4.57
1759 3487 5.431420 ACATTATGACGTTTGAAGTTGCA 57.569 34.783 0.00 0.00 0.00 4.08
1760 3488 4.851558 GGACATTATGACGTTTGAAGTTGC 59.148 41.667 0.00 0.00 0.00 4.17
1761 3489 5.996219 TGGACATTATGACGTTTGAAGTTG 58.004 37.500 0.00 0.00 0.00 3.16
1762 3490 6.262273 AGTTGGACATTATGACGTTTGAAGTT 59.738 34.615 0.00 0.00 0.00 2.66
1763 3491 5.763204 AGTTGGACATTATGACGTTTGAAGT 59.237 36.000 0.00 0.00 0.00 3.01
1764 3492 6.241207 AGTTGGACATTATGACGTTTGAAG 57.759 37.500 0.00 0.00 0.00 3.02
1765 3493 6.434596 CAAGTTGGACATTATGACGTTTGAA 58.565 36.000 0.00 0.00 0.00 2.69
1766 3494 5.049060 CCAAGTTGGACATTATGACGTTTGA 60.049 40.000 17.60 0.00 40.96 2.69
1767 3495 5.049060 TCCAAGTTGGACATTATGACGTTTG 60.049 40.000 21.05 0.00 42.67 2.93
1768 3496 5.067273 TCCAAGTTGGACATTATGACGTTT 58.933 37.500 21.05 0.00 42.67 3.60
1769 3497 4.647611 TCCAAGTTGGACATTATGACGTT 58.352 39.130 21.05 0.00 42.67 3.99
1770 3498 4.280436 TCCAAGTTGGACATTATGACGT 57.720 40.909 21.05 0.00 42.67 4.34
1781 3509 4.873746 TTTTTGTGTTGTCCAAGTTGGA 57.126 36.364 21.05 21.05 45.98 3.53
1782 3510 5.063312 GTCATTTTTGTGTTGTCCAAGTTGG 59.937 40.000 16.36 16.36 39.43 3.77
1783 3511 5.636965 TGTCATTTTTGTGTTGTCCAAGTTG 59.363 36.000 0.00 0.00 0.00 3.16
1784 3512 5.788450 TGTCATTTTTGTGTTGTCCAAGTT 58.212 33.333 0.00 0.00 0.00 2.66
1785 3513 5.398603 TGTCATTTTTGTGTTGTCCAAGT 57.601 34.783 0.00 0.00 0.00 3.16
1786 3514 5.463061 GGATGTCATTTTTGTGTTGTCCAAG 59.537 40.000 0.00 0.00 0.00 3.61
1787 3515 5.105187 TGGATGTCATTTTTGTGTTGTCCAA 60.105 36.000 0.00 0.00 0.00 3.53
1788 3516 4.403752 TGGATGTCATTTTTGTGTTGTCCA 59.596 37.500 0.00 0.00 0.00 4.02
1789 3517 4.942852 TGGATGTCATTTTTGTGTTGTCC 58.057 39.130 0.00 0.00 0.00 4.02
1817 3545 7.955918 AGTTGCCTGAAAATAGTCATCTTTTT 58.044 30.769 0.00 0.00 0.00 1.94
1818 3546 7.530426 AGTTGCCTGAAAATAGTCATCTTTT 57.470 32.000 0.00 0.00 0.00 2.27
1819 3547 7.530426 AAGTTGCCTGAAAATAGTCATCTTT 57.470 32.000 0.00 0.00 0.00 2.52
1820 3548 8.814038 ATAAGTTGCCTGAAAATAGTCATCTT 57.186 30.769 0.00 0.00 0.00 2.40
1821 3549 9.905713 TTATAAGTTGCCTGAAAATAGTCATCT 57.094 29.630 0.00 0.00 0.00 2.90
1826 3554 9.574516 CCCTATTATAAGTTGCCTGAAAATAGT 57.425 33.333 0.00 0.00 0.00 2.12
1827 3555 9.793259 TCCCTATTATAAGTTGCCTGAAAATAG 57.207 33.333 0.00 0.00 0.00 1.73
1828 3556 9.793259 CTCCCTATTATAAGTTGCCTGAAAATA 57.207 33.333 0.00 0.00 0.00 1.40
1829 3557 8.502738 TCTCCCTATTATAAGTTGCCTGAAAAT 58.497 33.333 0.00 0.00 0.00 1.82
1830 3558 7.867921 TCTCCCTATTATAAGTTGCCTGAAAA 58.132 34.615 0.00 0.00 0.00 2.29
1831 3559 7.446106 TCTCCCTATTATAAGTTGCCTGAAA 57.554 36.000 0.00 0.00 0.00 2.69
1832 3560 7.446106 TTCTCCCTATTATAAGTTGCCTGAA 57.554 36.000 0.00 0.00 0.00 3.02
1833 3561 7.072454 ACATTCTCCCTATTATAAGTTGCCTGA 59.928 37.037 0.00 0.00 0.00 3.86
1834 3562 7.227156 ACATTCTCCCTATTATAAGTTGCCTG 58.773 38.462 0.00 0.00 0.00 4.85
1835 3563 7.394144 ACATTCTCCCTATTATAAGTTGCCT 57.606 36.000 0.00 0.00 0.00 4.75
1836 3564 7.719633 TGAACATTCTCCCTATTATAAGTTGCC 59.280 37.037 0.00 0.00 0.00 4.52
1837 3565 8.560374 GTGAACATTCTCCCTATTATAAGTTGC 58.440 37.037 0.00 0.00 0.00 4.17
1838 3566 9.838339 AGTGAACATTCTCCCTATTATAAGTTG 57.162 33.333 0.00 0.00 0.00 3.16
1845 3573 9.488762 TCTAGAAAGTGAACATTCTCCCTATTA 57.511 33.333 4.33 0.00 35.74 0.98
1846 3574 8.380742 TCTAGAAAGTGAACATTCTCCCTATT 57.619 34.615 4.33 0.00 35.74 1.73
1847 3575 7.979786 TCTAGAAAGTGAACATTCTCCCTAT 57.020 36.000 4.33 0.00 35.74 2.57
1848 3576 7.792364 TTCTAGAAAGTGAACATTCTCCCTA 57.208 36.000 1.68 0.00 35.74 3.53
1849 3577 6.688073 TTCTAGAAAGTGAACATTCTCCCT 57.312 37.500 1.68 0.00 35.74 4.20
1850 3578 7.929941 AATTCTAGAAAGTGAACATTCTCCC 57.070 36.000 9.71 0.00 35.74 4.30
1874 3602 3.195825 CCCCACTGGTAAACACACAAAAA 59.804 43.478 0.00 0.00 0.00 1.94
1875 3603 2.761208 CCCCACTGGTAAACACACAAAA 59.239 45.455 0.00 0.00 0.00 2.44
1876 3604 2.379972 CCCCACTGGTAAACACACAAA 58.620 47.619 0.00 0.00 0.00 2.83
1877 3605 1.410365 CCCCCACTGGTAAACACACAA 60.410 52.381 0.00 0.00 0.00 3.33
1878 3606 0.183971 CCCCCACTGGTAAACACACA 59.816 55.000 0.00 0.00 0.00 3.72
1879 3607 0.475044 TCCCCCACTGGTAAACACAC 59.525 55.000 0.00 0.00 0.00 3.82
1880 3608 1.133730 GTTCCCCCACTGGTAAACACA 60.134 52.381 0.00 0.00 31.41 3.72
1881 3609 1.612676 GTTCCCCCACTGGTAAACAC 58.387 55.000 0.00 0.00 31.41 3.32
1882 3610 0.479378 GGTTCCCCCACTGGTAAACA 59.521 55.000 0.00 0.00 32.25 2.83
1883 3611 0.479378 TGGTTCCCCCACTGGTAAAC 59.521 55.000 0.00 0.00 38.72 2.01
1884 3612 1.232909 TTGGTTCCCCCACTGGTAAA 58.767 50.000 0.00 0.00 45.19 2.01
1885 3613 1.462426 ATTGGTTCCCCCACTGGTAA 58.538 50.000 0.00 0.00 45.19 2.85
1886 3614 1.462426 AATTGGTTCCCCCACTGGTA 58.538 50.000 0.00 0.00 45.19 3.25
1887 3615 0.565674 AAATTGGTTCCCCCACTGGT 59.434 50.000 0.00 0.00 45.19 4.00
1888 3616 2.176045 GTAAATTGGTTCCCCCACTGG 58.824 52.381 0.00 0.00 45.19 4.00
1889 3617 3.169512 AGTAAATTGGTTCCCCCACTG 57.830 47.619 0.00 0.00 45.19 3.66
1890 3618 3.920841 AGTAGTAAATTGGTTCCCCCACT 59.079 43.478 0.00 0.00 45.19 4.00
1891 3619 4.311520 AGTAGTAAATTGGTTCCCCCAC 57.688 45.455 0.00 0.00 45.19 4.61
1892 3620 4.264038 GGAAGTAGTAAATTGGTTCCCCCA 60.264 45.833 0.00 0.00 43.27 4.96
1893 3621 4.017775 AGGAAGTAGTAAATTGGTTCCCCC 60.018 45.833 0.00 0.00 35.08 5.40
1894 3622 5.188988 AGGAAGTAGTAAATTGGTTCCCC 57.811 43.478 0.00 0.00 35.08 4.81
1895 3623 6.717997 TCAAAGGAAGTAGTAAATTGGTTCCC 59.282 38.462 0.00 0.00 35.08 3.97
1896 3624 7.754851 TCAAAGGAAGTAGTAAATTGGTTCC 57.245 36.000 0.00 0.00 34.78 3.62
1897 3625 8.459635 GGATCAAAGGAAGTAGTAAATTGGTTC 58.540 37.037 0.00 0.00 0.00 3.62
1898 3626 7.947890 TGGATCAAAGGAAGTAGTAAATTGGTT 59.052 33.333 0.00 0.00 0.00 3.67
1899 3627 7.466804 TGGATCAAAGGAAGTAGTAAATTGGT 58.533 34.615 0.00 0.00 0.00 3.67
1900 3628 7.938140 TGGATCAAAGGAAGTAGTAAATTGG 57.062 36.000 0.00 0.00 0.00 3.16
1907 3635 9.838339 CACTTATTATGGATCAAAGGAAGTAGT 57.162 33.333 0.00 0.00 0.00 2.73
1908 3636 8.778358 GCACTTATTATGGATCAAAGGAAGTAG 58.222 37.037 0.00 0.00 0.00 2.57
1909 3637 7.719633 GGCACTTATTATGGATCAAAGGAAGTA 59.280 37.037 0.00 0.00 0.00 2.24
1910 3638 6.547510 GGCACTTATTATGGATCAAAGGAAGT 59.452 38.462 0.00 0.00 0.00 3.01
1911 3639 6.547141 TGGCACTTATTATGGATCAAAGGAAG 59.453 38.462 0.00 0.00 0.00 3.46
1912 3640 6.430864 TGGCACTTATTATGGATCAAAGGAA 58.569 36.000 0.00 0.00 0.00 3.36
1913 3641 6.012337 TGGCACTTATTATGGATCAAAGGA 57.988 37.500 0.00 0.00 0.00 3.36
1914 3642 6.491062 TCATGGCACTTATTATGGATCAAAGG 59.509 38.462 0.00 0.00 0.00 3.11
1915 3643 7.514784 TCATGGCACTTATTATGGATCAAAG 57.485 36.000 0.00 0.00 0.00 2.77
1916 3644 8.481492 AATCATGGCACTTATTATGGATCAAA 57.519 30.769 0.00 0.00 0.00 2.69
1917 3645 8.481492 AAATCATGGCACTTATTATGGATCAA 57.519 30.769 0.00 0.00 0.00 2.57
1918 3646 8.481492 AAAATCATGGCACTTATTATGGATCA 57.519 30.769 0.00 0.00 0.00 2.92
1962 3690 9.431887 CGGTTGCCTATTTATAGATAAAAGCTA 57.568 33.333 12.43 6.14 36.02 3.32
1963 3691 8.154856 TCGGTTGCCTATTTATAGATAAAAGCT 58.845 33.333 12.43 0.00 36.02 3.74
1964 3692 8.319143 TCGGTTGCCTATTTATAGATAAAAGC 57.681 34.615 0.00 4.20 36.02 3.51
1965 3693 9.706691 TCTCGGTTGCCTATTTATAGATAAAAG 57.293 33.333 0.00 0.12 36.02 2.27
1999 3727 5.710099 TGTTTAGGATCTTCGGCTTTGAAAT 59.290 36.000 0.00 0.00 0.00 2.17
2011 3739 9.905713 TGATAAGTAATGCTTGTTTAGGATCTT 57.094 29.630 0.00 0.00 38.05 2.40
2024 3752 9.553064 CCTAGTTCTCAATTGATAAGTAATGCT 57.447 33.333 17.17 8.89 0.00 3.79
2030 3758 6.951971 ACTGCCTAGTTCTCAATTGATAAGT 58.048 36.000 8.96 13.14 31.66 2.24
2036 3764 3.503363 TGCAACTGCCTAGTTCTCAATTG 59.497 43.478 0.00 0.00 45.12 2.32
2117 4729 4.336993 TGCACATTAGGACGTTTGAAGTTT 59.663 37.500 0.00 0.00 0.00 2.66
2131 4743 6.299023 TGTGTTGTCTAAGTTGCACATTAG 57.701 37.500 9.80 9.80 32.79 1.73
2138 4750 6.751888 AGTCATTTTTGTGTTGTCTAAGTTGC 59.248 34.615 0.00 0.00 0.00 4.17
2204 4816 8.479280 CGTCACAAAAAGAAAAGATTTACCATG 58.521 33.333 0.00 0.00 0.00 3.66
2272 4885 2.318908 TCAGCCTTGCAAAGTGGAAAT 58.681 42.857 7.37 0.00 44.25 2.17
2294 4907 3.883631 TGAATATGATGCATGCGTGAC 57.116 42.857 19.18 4.19 0.00 3.67
2299 4912 3.426323 CGCTCATGAATATGATGCATGC 58.574 45.455 11.82 11.82 42.19 4.06
2433 5243 8.235359 ACATATGTGGTAGTACTAGGACTTTC 57.765 38.462 14.24 7.16 0.00 2.62
2487 6889 9.884465 CAAATTTCCTATACTGCACTTATTAGC 57.116 33.333 0.00 0.00 0.00 3.09
2499 6901 8.766994 AATATGCACACCAAATTTCCTATACT 57.233 30.769 0.00 0.00 0.00 2.12
2505 6907 6.108015 ACATGAATATGCACACCAAATTTCC 58.892 36.000 0.00 0.00 37.85 3.13
2597 7069 3.447918 TCGTCCTGTTCTTTCGTTTCT 57.552 42.857 0.00 0.00 0.00 2.52
2615 7087 2.556287 GCTGTTGCCTTCGGTTCG 59.444 61.111 0.00 0.00 0.00 3.95
2626 7098 4.025401 GTTCCGTGCCCGCTGTTG 62.025 66.667 0.00 0.00 0.00 3.33
2726 7198 9.743057 AACGTTCATTTCAAAACTTGATATCAA 57.257 25.926 17.07 17.07 39.84 2.57
2873 7347 4.450082 TGAAGCGACTGTGTGTATACAT 57.550 40.909 9.18 0.00 39.39 2.29
2882 7356 4.849926 CAGAATGAAAATGAAGCGACTGTG 59.150 41.667 0.00 0.00 39.69 3.66
2900 7374 1.281867 TCCGAGCCAACAATCCAGAAT 59.718 47.619 0.00 0.00 0.00 2.40
2926 7400 7.335627 ACGAAGGACAATTCATAACTCCATTA 58.664 34.615 0.00 0.00 0.00 1.90
2933 7407 6.842163 ACATCAACGAAGGACAATTCATAAC 58.158 36.000 0.00 0.00 0.00 1.89
2960 7434 2.417933 GCAGCATAAGACAGACAACAGG 59.582 50.000 0.00 0.00 0.00 4.00
2961 7435 2.417933 GGCAGCATAAGACAGACAACAG 59.582 50.000 0.00 0.00 0.00 3.16
2962 7436 2.038952 AGGCAGCATAAGACAGACAACA 59.961 45.455 0.00 0.00 0.00 3.33
2963 7437 2.704572 AGGCAGCATAAGACAGACAAC 58.295 47.619 0.00 0.00 0.00 3.32
2964 7438 4.551702 TTAGGCAGCATAAGACAGACAA 57.448 40.909 0.00 0.00 0.00 3.18
2965 7439 4.253685 GTTTAGGCAGCATAAGACAGACA 58.746 43.478 0.00 0.00 0.00 3.41
2966 7440 4.253685 TGTTTAGGCAGCATAAGACAGAC 58.746 43.478 0.00 0.00 0.00 3.51
2967 7441 4.551702 TGTTTAGGCAGCATAAGACAGA 57.448 40.909 0.00 0.00 0.00 3.41
2972 7448 6.882610 TTCCATATGTTTAGGCAGCATAAG 57.117 37.500 1.24 0.00 0.00 1.73
2984 7460 6.403636 GCGAACACTTCTCATTCCATATGTTT 60.404 38.462 1.24 0.00 0.00 2.83
2992 7468 2.882742 GTGCGAACACTTCTCATTCC 57.117 50.000 0.00 0.00 43.85 3.01
3079 7555 2.202570 CGTACCACGCTTCCGGAG 60.203 66.667 3.34 0.00 39.22 4.63
3090 7566 2.125310 CGGATTGCCTGCGTACCA 60.125 61.111 0.00 0.00 33.47 3.25
3144 11980 2.452114 CCTGACAGGGTCCCTCCT 59.548 66.667 14.26 0.00 37.71 3.69
3267 12104 6.323996 CCTTTACTTTTCCTTCTCCCTTGTTT 59.676 38.462 0.00 0.00 0.00 2.83
3317 12157 4.803088 CCGATTGAACAACAACACACAATT 59.197 37.500 0.00 0.00 41.52 2.32
3354 12194 4.282496 AGTCCATCCGCCTCTTATATAGG 58.718 47.826 0.00 0.00 37.17 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.