Multiple sequence alignment - TraesCS1B01G282800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G282800 chr1B 100.000 4858 0 0 1 4858 491530386 491535243 0.000000e+00 8972.0
1 TraesCS1B01G282800 chr1B 92.453 106 6 2 2795 2899 491533284 491533180 3.030000e-32 150.0
2 TraesCS1B01G282800 chr1A 93.664 2336 62 40 512 2806 466896256 466898546 0.000000e+00 3415.0
3 TraesCS1B01G282800 chr1A 90.987 1642 70 35 3273 4858 466898888 466900507 0.000000e+00 2141.0
4 TraesCS1B01G282800 chr1A 96.353 329 7 3 2889 3216 466898545 466898869 1.990000e-148 536.0
5 TraesCS1B01G282800 chr1D 92.000 1650 65 35 512 2124 367399984 367401603 0.000000e+00 2254.0
6 TraesCS1B01G282800 chr1D 91.243 1336 41 20 2889 4207 367402362 367403638 0.000000e+00 1749.0
7 TraesCS1B01G282800 chr1D 97.661 684 11 5 2123 2806 367401685 367402363 0.000000e+00 1170.0
8 TraesCS1B01G282800 chr1D 85.294 680 36 17 4231 4858 367403739 367404406 1.140000e-180 643.0
9 TraesCS1B01G282800 chr5B 89.883 514 44 5 10 518 272187662 272187152 0.000000e+00 654.0
10 TraesCS1B01G282800 chr2B 89.194 509 52 2 10 515 413870025 413870533 2.470000e-177 632.0
11 TraesCS1B01G282800 chr2B 86.590 522 60 8 2 518 566442444 566442960 7.060000e-158 568.0
12 TraesCS1B01G282800 chr2B 88.333 120 8 5 2784 2899 6101718 6101835 6.560000e-29 139.0
13 TraesCS1B01G282800 chr2B 87.324 71 6 2 4164 4233 729514118 729514186 1.450000e-10 78.7
14 TraesCS1B01G282800 chr3B 88.403 526 55 4 2 521 250570526 250571051 3.190000e-176 628.0
15 TraesCS1B01G282800 chr3B 90.164 61 4 1 4164 4224 615468058 615468000 1.450000e-10 78.7
16 TraesCS1B01G282800 chr7B 88.155 515 52 7 10 517 489833934 489834446 5.380000e-169 604.0
17 TraesCS1B01G282800 chr7B 87.380 523 57 5 2 518 395710898 395710379 4.190000e-165 592.0
18 TraesCS1B01G282800 chr5D 86.286 525 59 5 2 515 557551438 557550916 4.250000e-155 558.0
19 TraesCS1B01G282800 chr4D 85.934 519 58 10 2 515 418735086 418735594 1.540000e-149 540.0
20 TraesCS1B01G282800 chr7D 84.952 525 67 5 2 515 565437752 565437229 5.570000e-144 521.0
21 TraesCS1B01G282800 chr7D 92.523 107 4 3 2796 2898 32004556 32004662 3.030000e-32 150.0
22 TraesCS1B01G282800 chr6B 94.059 101 4 2 2796 2896 550375797 550375699 8.420000e-33 152.0
23 TraesCS1B01G282800 chr6B 90.164 61 4 1 4164 4224 430544878 430544820 1.450000e-10 78.7
24 TraesCS1B01G282800 chr2A 95.789 95 3 1 2796 2890 98882824 98882731 8.420000e-33 152.0
25 TraesCS1B01G282800 chr2A 90.826 109 9 1 2786 2893 754446834 754446726 1.410000e-30 145.0
26 TraesCS1B01G282800 chr2A 89.565 115 9 3 2805 2917 362443162 362443049 5.070000e-30 143.0
27 TraesCS1B01G282800 chr2A 89.231 65 6 1 4169 4232 705877102 705877166 4.030000e-11 80.5
28 TraesCS1B01G282800 chr2A 90.164 61 4 1 4164 4224 738825486 738825544 1.450000e-10 78.7
29 TraesCS1B01G282800 chr2D 94.000 100 3 2 2791 2890 601594653 601594557 1.090000e-31 148.0
30 TraesCS1B01G282800 chr3A 93.000 100 7 0 2800 2899 65704338 65704239 3.920000e-31 147.0
31 TraesCS1B01G282800 chr3A 90.164 61 4 1 4164 4224 56079597 56079655 1.450000e-10 78.7
32 TraesCS1B01G282800 chr4A 90.164 61 4 1 4164 4224 536325814 536325872 1.450000e-10 78.7
33 TraesCS1B01G282800 chr5A 91.071 56 3 1 4169 4224 543952066 543952013 1.880000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G282800 chr1B 491530386 491535243 4857 False 8972.000000 8972 100.0000 1 4858 1 chr1B.!!$F1 4857
1 TraesCS1B01G282800 chr1A 466896256 466900507 4251 False 2030.666667 3415 93.6680 512 4858 3 chr1A.!!$F1 4346
2 TraesCS1B01G282800 chr1D 367399984 367404406 4422 False 1454.000000 2254 91.5495 512 4858 4 chr1D.!!$F1 4346
3 TraesCS1B01G282800 chr5B 272187152 272187662 510 True 654.000000 654 89.8830 10 518 1 chr5B.!!$R1 508
4 TraesCS1B01G282800 chr2B 413870025 413870533 508 False 632.000000 632 89.1940 10 515 1 chr2B.!!$F2 505
5 TraesCS1B01G282800 chr2B 566442444 566442960 516 False 568.000000 568 86.5900 2 518 1 chr2B.!!$F3 516
6 TraesCS1B01G282800 chr3B 250570526 250571051 525 False 628.000000 628 88.4030 2 521 1 chr3B.!!$F1 519
7 TraesCS1B01G282800 chr7B 489833934 489834446 512 False 604.000000 604 88.1550 10 517 1 chr7B.!!$F1 507
8 TraesCS1B01G282800 chr7B 395710379 395710898 519 True 592.000000 592 87.3800 2 518 1 chr7B.!!$R1 516
9 TraesCS1B01G282800 chr5D 557550916 557551438 522 True 558.000000 558 86.2860 2 515 1 chr5D.!!$R1 513
10 TraesCS1B01G282800 chr4D 418735086 418735594 508 False 540.000000 540 85.9340 2 515 1 chr4D.!!$F1 513
11 TraesCS1B01G282800 chr7D 565437229 565437752 523 True 521.000000 521 84.9520 2 515 1 chr7D.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.031585 CCGATTCCGCGTCCATCTTA 59.968 55.000 4.92 0.00 0.00 2.10 F
589 622 0.337428 ATGCCTTTCATGCCCCTCTT 59.663 50.000 0.00 0.00 33.26 2.85 F
1756 1821 0.109086 CCAGCTGTACAGTCGAGTGG 60.109 60.000 23.44 17.14 0.00 4.00 F
2311 2483 0.110486 GGGGAACTGAGTTTGGCAGA 59.890 55.000 0.00 0.00 36.86 4.26 F
2482 2654 1.211949 CACCAGGATTACCCACCGATT 59.788 52.381 0.00 0.00 37.41 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1030 1091 0.179166 GCTGTCGCAGTCTCTCTCTG 60.179 60.000 8.32 0.0 33.43 3.35 R
1981 2070 0.183492 GTGCCCTCATGCCCAATCTA 59.817 55.000 0.00 0.0 0.00 1.98 R
2625 2797 0.179032 TCGTTTTGCTCCTCCTGCAA 60.179 50.000 0.00 0.0 46.90 4.08 R
3241 3413 1.066303 TGCGAATGAAACAACCCACAC 59.934 47.619 0.00 0.0 0.00 3.82 R
4430 4716 1.102222 AAGCCACCCGCGTTTTGTAA 61.102 50.000 4.92 0.0 44.76 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.617947 CCCTCCGGTTCCTCCTCTTG 61.618 65.000 0.00 0.00 0.00 3.02
93 94 0.031585 CCGATTCCGCGTCCATCTTA 59.968 55.000 4.92 0.00 0.00 2.10
119 120 1.592669 CCTCTAGCGTGCATTCCGG 60.593 63.158 0.00 0.00 0.00 5.14
144 145 1.770324 CTTCCTTGGACCCTTGGCT 59.230 57.895 0.00 0.00 0.00 4.75
165 167 4.505039 GCTACCTTCTTCTTCACCTTTCCA 60.505 45.833 0.00 0.00 0.00 3.53
169 171 1.774254 TCTTCTTCACCTTTCCAGGCA 59.226 47.619 0.00 0.00 45.56 4.75
304 329 3.276846 GCTTTGTGCCACCGACGT 61.277 61.111 0.00 0.00 35.15 4.34
492 525 1.745320 GACGCACCCGGATAGGATGT 61.745 60.000 0.73 0.00 45.00 3.06
565 598 6.326064 AGCAAGGACATACTCTCTGTATCAAT 59.674 38.462 0.00 0.00 39.66 2.57
580 613 7.058525 TCTGTATCAATCTTGATGCCTTTCAT 58.941 34.615 14.24 0.00 46.68 2.57
583 616 3.131577 TCAATCTTGATGCCTTTCATGCC 59.868 43.478 0.00 0.00 35.05 4.40
585 618 0.462789 CTTGATGCCTTTCATGCCCC 59.537 55.000 0.00 0.00 35.05 5.80
589 622 0.337428 ATGCCTTTCATGCCCCTCTT 59.663 50.000 0.00 0.00 33.26 2.85
718 751 5.751243 AACCGATGATTTAGTGTAATGGC 57.249 39.130 0.00 0.00 0.00 4.40
745 780 6.197096 GCTTCAATTATTGCGGATGTGTTTAG 59.803 38.462 0.00 0.00 0.00 1.85
816 854 2.270986 GGAAAGCAGCCCTGTGGTG 61.271 63.158 0.00 0.00 45.40 4.17
884 936 3.996124 CTCCGCCTCCGCCATAGG 61.996 72.222 0.00 0.00 37.17 2.57
923 981 1.078426 CCTCCCGCTTCCATCGTTT 60.078 57.895 0.00 0.00 0.00 3.60
988 1049 1.002502 CTTTCCACCTCCCCCGAAC 60.003 63.158 0.00 0.00 0.00 3.95
1031 1092 3.791973 AAATTCGAGCCAACAACAACA 57.208 38.095 0.00 0.00 0.00 3.33
1032 1093 3.354089 AATTCGAGCCAACAACAACAG 57.646 42.857 0.00 0.00 0.00 3.16
1682 1746 0.802607 GAGAGGAAGCAGGTTACGCG 60.803 60.000 3.53 3.53 0.00 6.01
1693 1757 2.345641 CAGGTTACGCGAAATGTCTCAG 59.654 50.000 15.93 0.00 0.00 3.35
1713 1778 2.835764 AGCAGGGACAAATTTGATGCAT 59.164 40.909 24.64 0.00 33.16 3.96
1741 1806 0.673985 GGTTTGACCTTTGTCCCAGC 59.326 55.000 0.00 0.00 41.01 4.85
1756 1821 0.109086 CCAGCTGTACAGTCGAGTGG 60.109 60.000 23.44 17.14 0.00 4.00
1879 1944 4.215109 ACAGGTATGTTTTTGGTTCTGCT 58.785 39.130 0.00 0.00 35.63 4.24
1900 1965 8.349983 TCTGCTTTAGTTTGGAATGAAAGTTAC 58.650 33.333 0.00 0.00 31.24 2.50
1904 1969 9.893305 CTTTAGTTTGGAATGAAAGTTACGAAT 57.107 29.630 0.00 0.00 0.00 3.34
1909 1974 5.457140 TGGAATGAAAGTTACGAATTGTGC 58.543 37.500 0.00 0.00 0.00 4.57
1998 2087 1.683385 GTTTAGATTGGGCATGAGGGC 59.317 52.381 0.00 0.00 42.44 5.19
2022 2111 5.934625 CACACTATGATTATGGAACTAGGCC 59.065 44.000 0.00 0.00 0.00 5.19
2026 2115 5.653255 ATGATTATGGAACTAGGCCAACT 57.347 39.130 5.01 0.00 39.21 3.16
2311 2483 0.110486 GGGGAACTGAGTTTGGCAGA 59.890 55.000 0.00 0.00 36.86 4.26
2363 2535 2.683362 GGGTTAGCACTTCTGTAATGCC 59.317 50.000 0.00 0.00 40.33 4.40
2364 2536 3.610911 GGTTAGCACTTCTGTAATGCCT 58.389 45.455 0.00 0.00 40.33 4.75
2482 2654 1.211949 CACCAGGATTACCCACCGATT 59.788 52.381 0.00 0.00 37.41 3.34
2506 2678 3.073062 AGTGTGCCAAAGTATCTTCCTGT 59.927 43.478 0.00 0.00 0.00 4.00
2796 2968 6.556495 TCACTATCTTTCTTCCTCCATATGCT 59.444 38.462 0.00 0.00 0.00 3.79
2807 2979 9.775539 TCTTCCTCCATATGCTAAATAGATACT 57.224 33.333 0.00 0.00 0.00 2.12
2809 2981 8.540507 TCCTCCATATGCTAAATAGATACTCC 57.459 38.462 0.00 0.00 0.00 3.85
2810 2982 7.565398 TCCTCCATATGCTAAATAGATACTCCC 59.435 40.741 0.00 0.00 0.00 4.30
2811 2983 7.566879 CCTCCATATGCTAAATAGATACTCCCT 59.433 40.741 0.00 0.00 0.00 4.20
2812 2984 8.540507 TCCATATGCTAAATAGATACTCCCTC 57.459 38.462 0.00 0.00 0.00 4.30
2813 2985 7.565398 TCCATATGCTAAATAGATACTCCCTCC 59.435 40.741 0.00 0.00 0.00 4.30
2814 2986 5.923733 ATGCTAAATAGATACTCCCTCCG 57.076 43.478 0.00 0.00 0.00 4.63
2815 2987 4.737578 TGCTAAATAGATACTCCCTCCGT 58.262 43.478 0.00 0.00 0.00 4.69
2817 2989 5.601313 TGCTAAATAGATACTCCCTCCGTTT 59.399 40.000 0.00 0.00 0.00 3.60
2818 2990 6.157904 GCTAAATAGATACTCCCTCCGTTTC 58.842 44.000 0.00 0.00 0.00 2.78
2819 2991 6.239232 GCTAAATAGATACTCCCTCCGTTTCA 60.239 42.308 0.00 0.00 0.00 2.69
2820 2992 6.555463 AAATAGATACTCCCTCCGTTTCAA 57.445 37.500 0.00 0.00 0.00 2.69
2821 2993 6.555463 AATAGATACTCCCTCCGTTTCAAA 57.445 37.500 0.00 0.00 0.00 2.69
2822 2994 4.903045 AGATACTCCCTCCGTTTCAAAA 57.097 40.909 0.00 0.00 0.00 2.44
2823 2995 5.437191 AGATACTCCCTCCGTTTCAAAAT 57.563 39.130 0.00 0.00 0.00 1.82
2824 2996 6.555463 AGATACTCCCTCCGTTTCAAAATA 57.445 37.500 0.00 0.00 0.00 1.40
2825 2997 6.583562 AGATACTCCCTCCGTTTCAAAATAG 58.416 40.000 0.00 0.00 0.00 1.73
2826 2998 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2827 2999 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2828 3000 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2829 3001 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2830 3002 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2831 3003 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
2832 3004 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
2833 3005 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
2834 3006 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
2835 3007 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
2836 3008 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
2837 3009 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
2838 3010 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
2839 3011 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
2840 3012 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
2843 3015 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
2866 3038 7.934457 ACTAAAGTTAGTACGAAGTTGAGTCA 58.066 34.615 16.59 0.00 41.92 3.41
2867 3039 8.574737 ACTAAAGTTAGTACGAAGTTGAGTCAT 58.425 33.333 16.59 2.17 41.92 3.06
2868 3040 7.870588 AAAGTTAGTACGAAGTTGAGTCATC 57.129 36.000 9.24 0.00 37.78 2.92
2869 3041 6.821031 AGTTAGTACGAAGTTGAGTCATCT 57.179 37.500 0.00 0.00 37.78 2.90
2870 3042 7.918536 AGTTAGTACGAAGTTGAGTCATCTA 57.081 36.000 4.14 0.00 37.78 1.98
2871 3043 8.508883 AGTTAGTACGAAGTTGAGTCATCTAT 57.491 34.615 4.14 0.00 37.78 1.98
2872 3044 8.958506 AGTTAGTACGAAGTTGAGTCATCTATT 58.041 33.333 4.14 0.00 37.78 1.73
2873 3045 9.570488 GTTAGTACGAAGTTGAGTCATCTATTT 57.430 33.333 4.14 0.00 37.78 1.40
2875 3047 8.467402 AGTACGAAGTTGAGTCATCTATTTTG 57.533 34.615 4.14 0.00 37.78 2.44
2876 3048 8.304596 AGTACGAAGTTGAGTCATCTATTTTGA 58.695 33.333 4.14 0.00 37.78 2.69
2877 3049 7.962964 ACGAAGTTGAGTCATCTATTTTGAA 57.037 32.000 4.14 0.00 37.78 2.69
2878 3050 8.378172 ACGAAGTTGAGTCATCTATTTTGAAA 57.622 30.769 4.14 0.00 37.78 2.69
2879 3051 8.283291 ACGAAGTTGAGTCATCTATTTTGAAAC 58.717 33.333 4.14 0.00 37.78 2.78
2880 3052 7.475565 CGAAGTTGAGTCATCTATTTTGAAACG 59.524 37.037 4.14 0.00 0.00 3.60
2881 3053 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
2882 3054 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
2883 3055 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
2884 3056 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
2885 3057 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
2886 3058 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
2887 3059 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
2888 3060 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
2889 3061 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
2890 3062 6.555463 TCTATTTTGAAACGGAGGGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
2891 3063 6.346096 TCTATTTTGAAACGGAGGGAGTATG 58.654 40.000 0.00 0.00 0.00 2.39
2892 3064 4.360951 TTTTGAAACGGAGGGAGTATGT 57.639 40.909 0.00 0.00 0.00 2.29
2893 3065 5.486735 TTTTGAAACGGAGGGAGTATGTA 57.513 39.130 0.00 0.00 0.00 2.29
2894 3066 5.687166 TTTGAAACGGAGGGAGTATGTAT 57.313 39.130 0.00 0.00 0.00 2.29
2895 3067 5.687166 TTGAAACGGAGGGAGTATGTATT 57.313 39.130 0.00 0.00 0.00 1.89
2896 3068 6.795144 TTGAAACGGAGGGAGTATGTATTA 57.205 37.500 0.00 0.00 0.00 0.98
2897 3069 6.401047 TGAAACGGAGGGAGTATGTATTAG 57.599 41.667 0.00 0.00 0.00 1.73
2898 3070 4.868314 AACGGAGGGAGTATGTATTAGC 57.132 45.455 0.00 0.00 0.00 3.09
2899 3071 2.818432 ACGGAGGGAGTATGTATTAGCG 59.182 50.000 0.00 0.00 0.00 4.26
3107 3279 5.894298 TTCTTATATCTCAGTGCACCCAT 57.106 39.130 14.63 2.93 0.00 4.00
3191 3363 5.305585 TCGAGAACTATCCTTTTTGTTGCT 58.694 37.500 0.00 0.00 0.00 3.91
3192 3364 6.460781 TCGAGAACTATCCTTTTTGTTGCTA 58.539 36.000 0.00 0.00 0.00 3.49
3370 3555 3.827008 TTCCTATGGCATGACACTCTC 57.173 47.619 1.45 0.00 0.00 3.20
3436 3621 1.275666 AAGGGCCCTTATTTGTTGCC 58.724 50.000 36.51 0.00 41.42 4.52
3594 3779 5.833667 ACTCGATGGAATGGTAGAAGTATCA 59.166 40.000 0.00 0.00 0.00 2.15
3704 3890 0.166814 GCAGCAAGACTTGTTAGGCG 59.833 55.000 16.39 0.40 33.24 5.52
3717 3903 2.291411 TGTTAGGCGGAAGGACTCTAGT 60.291 50.000 0.00 0.00 34.13 2.57
3720 3906 1.183549 GGCGGAAGGACTCTAGTTCA 58.816 55.000 0.00 0.00 0.00 3.18
3775 3961 0.249120 TGCGTGATCGGAAAGGTCAT 59.751 50.000 0.00 0.00 42.77 3.06
3875 4061 9.502091 TTTGCATAAAATGTAGACTAGAGTTGT 57.498 29.630 0.00 0.00 0.00 3.32
3927 4113 4.782019 TGTTTGTGTTCAGTTTTCAGCT 57.218 36.364 0.00 0.00 0.00 4.24
4008 4194 4.829064 TGCCACAAGTGTGAAATACTTC 57.171 40.909 13.02 0.00 45.71 3.01
4011 4197 4.515191 GCCACAAGTGTGAAATACTTCTGA 59.485 41.667 13.02 0.00 45.71 3.27
4024 4210 2.571212 ACTTCTGACAAATCGTGCCAA 58.429 42.857 0.00 0.00 0.00 4.52
4025 4211 2.290641 ACTTCTGACAAATCGTGCCAAC 59.709 45.455 0.00 0.00 0.00 3.77
4038 4224 1.068333 GTGCCAACGCTTGTGATGATT 60.068 47.619 0.00 0.00 35.36 2.57
4051 4237 6.033831 GCTTGTGATGATTAATTTGTTCACCG 59.966 38.462 13.68 8.95 34.11 4.94
4052 4238 5.398169 TGTGATGATTAATTTGTTCACCGC 58.602 37.500 13.68 0.00 34.11 5.68
4078 4266 1.035139 GATGGCATGCCCCAACTTAG 58.965 55.000 33.44 0.00 38.61 2.18
4104 4292 0.258774 AAGTGTGGTGAAAGCCTGGT 59.741 50.000 0.00 0.00 0.00 4.00
4108 4296 3.329520 AGTGTGGTGAAAGCCTGGTTATA 59.670 43.478 0.00 0.00 0.00 0.98
4155 4343 8.177663 GTCAGTGTACATATTTTGAGACCATTG 58.822 37.037 0.00 0.00 0.00 2.82
4178 4367 6.385443 TGAATGTGGATAGAATCTACTCCCT 58.615 40.000 12.80 0.00 40.90 4.20
4199 4388 5.661312 CCCTCCGTCCCATAATATAAGATCA 59.339 44.000 0.00 0.00 0.00 2.92
4232 4488 8.410141 AGTTTGAAAAACGATCTTATGTTTGGA 58.590 29.630 0.00 0.00 38.26 3.53
4234 4490 7.504924 TGAAAAACGATCTTATGTTTGGAGT 57.495 32.000 0.00 0.00 38.26 3.85
4235 4491 8.610248 TGAAAAACGATCTTATGTTTGGAGTA 57.390 30.769 0.00 0.00 38.26 2.59
4240 4496 8.561738 AACGATCTTATGTTTGGAGTAATTGT 57.438 30.769 0.00 0.00 0.00 2.71
4268 4533 6.650120 ACCGTAGATACTCAAAATTCCATGT 58.350 36.000 0.00 0.00 0.00 3.21
4287 4552 2.742053 TGTAAGTGATTCAGAAAGCGCC 59.258 45.455 2.29 0.00 31.69 6.53
4311 4576 7.012704 GCCATATTATTTCTGTGACATGACACT 59.987 37.037 24.87 10.24 40.87 3.55
4372 4656 4.065214 AGGGGAACAATGTTTGGATCAT 57.935 40.909 0.00 0.00 34.12 2.45
4379 4663 5.068234 ACAATGTTTGGATCATGAGCTTG 57.932 39.130 11.34 8.68 34.12 4.01
4393 4677 6.845302 TCATGAGCTTGTCAAACATATTGAC 58.155 36.000 13.02 13.02 46.57 3.18
4412 4698 7.618502 ATTGACATAAAACGCACCAGTTATA 57.381 32.000 0.00 0.00 33.41 0.98
4430 4716 7.362574 CCAGTTATACATTCCATTTGAAACGGT 60.363 37.037 0.00 0.00 36.33 4.83
4465 4751 2.158475 TGGCTTTGTGAGAAGGGTTGAT 60.158 45.455 0.00 0.00 0.00 2.57
4471 4757 1.002087 GTGAGAAGGGTTGATGTCGGT 59.998 52.381 0.00 0.00 0.00 4.69
4529 4816 4.601019 GTTCCATCAAATCAGTAATGGCG 58.399 43.478 0.00 0.00 38.83 5.69
4632 4948 6.771573 AGGCATCAATTCCATTTCAGAAAAA 58.228 32.000 0.00 0.00 0.00 1.94
4633 4949 6.877322 AGGCATCAATTCCATTTCAGAAAAAG 59.123 34.615 0.00 0.00 0.00 2.27
4634 4950 6.875195 GGCATCAATTCCATTTCAGAAAAAGA 59.125 34.615 0.00 0.00 0.00 2.52
4635 4951 7.551617 GGCATCAATTCCATTTCAGAAAAAGAT 59.448 33.333 0.00 0.00 0.00 2.40
4636 4952 9.590451 GCATCAATTCCATTTCAGAAAAAGATA 57.410 29.630 0.00 0.00 0.00 1.98
4712 5029 5.892568 AGAGAATAGAAACGATACGCACTT 58.107 37.500 0.00 0.00 0.00 3.16
4716 5033 7.649973 AGAATAGAAACGATACGCACTTAGAT 58.350 34.615 0.00 0.00 0.00 1.98
4727 5044 8.789743 CGATACGCACTTAGATACAAATGATAG 58.210 37.037 0.00 0.00 0.00 2.08
4728 5045 6.771188 ACGCACTTAGATACAAATGATAGC 57.229 37.500 0.00 0.00 0.00 2.97
4739 5056 1.597742 AATGATAGCGCACCATGGAC 58.402 50.000 21.47 9.22 0.00 4.02
4745 5062 2.669229 CGCACCATGGACAGCACA 60.669 61.111 21.47 0.00 0.00 4.57
4815 5132 2.727916 GCGCCAACAAGTATGCAAGTAC 60.728 50.000 0.00 0.00 0.00 2.73
4816 5133 2.742053 CGCCAACAAGTATGCAAGTACT 59.258 45.455 0.00 0.00 36.50 2.73
4817 5134 3.424829 CGCCAACAAGTATGCAAGTACTG 60.425 47.826 0.00 0.00 35.20 2.74
4818 5135 3.502211 GCCAACAAGTATGCAAGTACTGT 59.498 43.478 0.00 0.23 35.20 3.55
4819 5136 4.693566 GCCAACAAGTATGCAAGTACTGTA 59.306 41.667 0.00 0.00 35.20 2.74
4834 5151 5.533482 AGTACTGTAGAAGACTTGTTGCAG 58.467 41.667 0.00 12.11 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 4.041691 CCTGGAAAGGTGAAGAAGAAGGTA 59.958 45.833 0.00 0.00 0.00 3.08
165 167 3.141488 CTAGCCGTCGACCTGCCT 61.141 66.667 18.14 8.62 0.00 4.75
444 477 3.490078 GGGCAAAACGAACAAATCAGACA 60.490 43.478 0.00 0.00 0.00 3.41
580 613 2.825532 GAGCATTTTACAAAGAGGGGCA 59.174 45.455 0.00 0.00 0.00 5.36
583 616 6.603201 TCAATAGGAGCATTTTACAAAGAGGG 59.397 38.462 0.00 0.00 0.00 4.30
636 669 6.814506 AATATCACATTGGCATAAGCTCTC 57.185 37.500 0.00 0.00 41.70 3.20
718 751 4.039703 CACATCCGCAATAATTGAAGCAG 58.960 43.478 0.00 0.00 0.00 4.24
745 780 9.290483 CTTTTTCTTTCCTCTTTTGTCACTAAC 57.710 33.333 0.00 0.00 0.00 2.34
816 854 4.250431 GTGTGGTGTGGTGTGCGC 62.250 66.667 0.00 0.00 0.00 6.09
817 855 2.821810 TGTGTGGTGTGGTGTGCG 60.822 61.111 0.00 0.00 0.00 5.34
819 857 0.676466 AGTGTGTGTGGTGTGGTGTG 60.676 55.000 0.00 0.00 0.00 3.82
820 858 0.676466 CAGTGTGTGTGGTGTGGTGT 60.676 55.000 0.00 0.00 0.00 4.16
821 859 1.375853 CCAGTGTGTGTGGTGTGGTG 61.376 60.000 0.00 0.00 0.00 4.17
822 860 1.077787 CCAGTGTGTGTGGTGTGGT 60.078 57.895 0.00 0.00 0.00 4.16
823 861 2.480610 GCCAGTGTGTGTGGTGTGG 61.481 63.158 0.00 0.00 37.40 4.17
884 936 0.875908 TTGTGTGAGACTGCGACTGC 60.876 55.000 0.00 0.00 43.20 4.40
988 1049 3.839432 GCTCTCGGGGTCGAAGGG 61.839 72.222 0.00 0.00 45.47 3.95
1029 1090 1.164411 CTGTCGCAGTCTCTCTCTGT 58.836 55.000 0.00 0.00 35.60 3.41
1030 1091 0.179166 GCTGTCGCAGTCTCTCTCTG 60.179 60.000 8.32 0.00 33.43 3.35
1031 1092 1.312371 GGCTGTCGCAGTCTCTCTCT 61.312 60.000 8.32 0.00 38.10 3.10
1032 1093 1.138671 GGCTGTCGCAGTCTCTCTC 59.861 63.158 8.32 0.00 38.10 3.20
1305 1369 1.084866 TCTCCTTCCAGACCTCCTCA 58.915 55.000 0.00 0.00 0.00 3.86
1617 1681 1.012086 TCTTGATCATGCGCTTCTGC 58.988 50.000 9.73 0.00 0.00 4.26
1682 1746 2.479566 TGTCCCTGCTGAGACATTTC 57.520 50.000 3.78 0.00 38.07 2.17
1693 1757 2.747396 TGCATCAAATTTGTCCCTGC 57.253 45.000 17.47 19.32 0.00 4.85
1713 1778 2.996621 CAAAGGTCAAACCGTGCAAAAA 59.003 40.909 0.00 0.00 44.90 1.94
1741 1806 4.386049 GTCAAATTCCACTCGACTGTACAG 59.614 45.833 21.44 21.44 0.00 2.74
1756 1821 5.905480 AACCAAATGAAAGCGTCAAATTC 57.095 34.783 0.00 0.00 40.50 2.17
1900 1965 0.447406 TGCTCAATCCGCACAATTCG 59.553 50.000 0.00 0.00 31.40 3.34
1904 1969 0.961857 AGCATGCTCAATCCGCACAA 60.962 50.000 16.30 0.00 40.65 3.33
1909 1974 3.242870 GGAAAGTAAGCATGCTCAATCCG 60.243 47.826 22.93 0.00 0.00 4.18
1981 2070 0.183492 GTGCCCTCATGCCCAATCTA 59.817 55.000 0.00 0.00 0.00 1.98
1985 2074 1.496444 TAGTGTGCCCTCATGCCCAA 61.496 55.000 0.00 0.00 0.00 4.12
1998 2087 5.934625 GGCCTAGTTCCATAATCATAGTGTG 59.065 44.000 0.00 0.00 0.00 3.82
2032 2121 7.977853 ACAACTTAGAATGATCAATTTGGCATC 59.022 33.333 0.00 0.00 0.00 3.91
2080 2169 2.094675 GAGCTGGCACATTTGGTATGT 58.905 47.619 0.00 0.00 38.20 2.29
2161 2333 9.517868 AGGTATCTATCGCTTAGTAACATAACT 57.482 33.333 0.00 0.00 0.00 2.24
2193 2365 4.787551 TGGTGACAAAAGACTAACCACAT 58.212 39.130 0.00 0.00 37.44 3.21
2311 2483 7.062749 TGACACTACCAAGAAATACACTTCT 57.937 36.000 0.00 0.00 37.24 2.85
2405 2577 6.310960 CGAAACCATAATGAATCAACGAACA 58.689 36.000 0.00 0.00 0.00 3.18
2482 2654 5.221843 ACAGGAAGATACTTTGGCACACTAA 60.222 40.000 0.00 0.00 39.29 2.24
2506 2678 6.377146 GCAATTAGTCCCCAGTCTATTTTTGA 59.623 38.462 0.00 0.00 0.00 2.69
2625 2797 0.179032 TCGTTTTGCTCCTCCTGCAA 60.179 50.000 0.00 0.00 46.90 4.08
2626 2798 0.603707 CTCGTTTTGCTCCTCCTGCA 60.604 55.000 0.00 0.00 38.80 4.41
2796 2968 7.664552 TTGAAACGGAGGGAGTATCTATTTA 57.335 36.000 0.00 0.00 33.73 1.40
2806 2978 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
2807 2979 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
2808 2980 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
2809 2981 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
2810 2982 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
2811 2983 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
2812 2984 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
2813 2985 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
2814 2986 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
2817 2989 9.778741 AGTACAAAGTTGAGTCATCTATTTTGA 57.221 29.630 15.99 3.46 38.91 2.69
2840 3012 9.056005 TGACTCAACTTCGTACTAACTTTAGTA 57.944 33.333 4.98 4.98 43.36 1.82
2841 3013 7.934457 TGACTCAACTTCGTACTAACTTTAGT 58.066 34.615 6.85 6.85 45.39 2.24
2842 3014 8.967552 ATGACTCAACTTCGTACTAACTTTAG 57.032 34.615 0.00 0.00 36.82 1.85
2843 3015 8.790718 AGATGACTCAACTTCGTACTAACTTTA 58.209 33.333 0.00 0.00 0.00 1.85
2844 3016 7.659186 AGATGACTCAACTTCGTACTAACTTT 58.341 34.615 0.00 0.00 0.00 2.66
2845 3017 7.216973 AGATGACTCAACTTCGTACTAACTT 57.783 36.000 0.00 0.00 0.00 2.66
2846 3018 6.821031 AGATGACTCAACTTCGTACTAACT 57.179 37.500 0.00 0.00 0.00 2.24
2847 3019 9.570488 AAATAGATGACTCAACTTCGTACTAAC 57.430 33.333 0.00 0.00 0.00 2.34
2849 3021 9.569167 CAAAATAGATGACTCAACTTCGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
2850 3022 8.304596 TCAAAATAGATGACTCAACTTCGTACT 58.695 33.333 0.00 0.00 0.00 2.73
2851 3023 8.462143 TCAAAATAGATGACTCAACTTCGTAC 57.538 34.615 0.00 0.00 0.00 3.67
2852 3024 9.483916 TTTCAAAATAGATGACTCAACTTCGTA 57.516 29.630 0.00 0.00 0.00 3.43
2853 3025 7.962964 TTCAAAATAGATGACTCAACTTCGT 57.037 32.000 0.00 0.00 0.00 3.85
2854 3026 7.475565 CGTTTCAAAATAGATGACTCAACTTCG 59.524 37.037 0.00 0.00 0.00 3.79
2855 3027 7.746475 CCGTTTCAAAATAGATGACTCAACTTC 59.254 37.037 0.00 0.00 0.00 3.01
2856 3028 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
2857 3029 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
2858 3030 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
2859 3031 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
2860 3032 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
2861 3033 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
2862 3034 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
2863 3035 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2864 3036 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2865 3037 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2866 3038 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2867 3039 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2868 3040 6.113411 ACATACTCCCTCCGTTTCAAAATAG 58.887 40.000 0.00 0.00 0.00 1.73
2869 3041 6.057321 ACATACTCCCTCCGTTTCAAAATA 57.943 37.500 0.00 0.00 0.00 1.40
2870 3042 4.918588 ACATACTCCCTCCGTTTCAAAAT 58.081 39.130 0.00 0.00 0.00 1.82
2871 3043 4.360951 ACATACTCCCTCCGTTTCAAAA 57.639 40.909 0.00 0.00 0.00 2.44
2872 3044 5.687166 ATACATACTCCCTCCGTTTCAAA 57.313 39.130 0.00 0.00 0.00 2.69
2873 3045 5.687166 AATACATACTCCCTCCGTTTCAA 57.313 39.130 0.00 0.00 0.00 2.69
2874 3046 5.221382 GCTAATACATACTCCCTCCGTTTCA 60.221 44.000 0.00 0.00 0.00 2.69
2875 3047 5.228665 GCTAATACATACTCCCTCCGTTTC 58.771 45.833 0.00 0.00 0.00 2.78
2876 3048 4.261909 CGCTAATACATACTCCCTCCGTTT 60.262 45.833 0.00 0.00 0.00 3.60
2877 3049 3.255149 CGCTAATACATACTCCCTCCGTT 59.745 47.826 0.00 0.00 0.00 4.44
2878 3050 2.818432 CGCTAATACATACTCCCTCCGT 59.182 50.000 0.00 0.00 0.00 4.69
2879 3051 2.818432 ACGCTAATACATACTCCCTCCG 59.182 50.000 0.00 0.00 0.00 4.63
2880 3052 4.868314 AACGCTAATACATACTCCCTCC 57.132 45.455 0.00 0.00 0.00 4.30
2881 3053 6.514063 AGAAAACGCTAATACATACTCCCTC 58.486 40.000 0.00 0.00 0.00 4.30
2882 3054 6.481434 AGAAAACGCTAATACATACTCCCT 57.519 37.500 0.00 0.00 0.00 4.20
2883 3055 7.549615 AAAGAAAACGCTAATACATACTCCC 57.450 36.000 0.00 0.00 0.00 4.30
2896 3068 9.758651 ACCATCTTTAAATAAAAAGAAAACGCT 57.241 25.926 3.40 0.00 45.83 5.07
3107 3279 1.846007 AATCCGTTATTGCAAGGCCA 58.154 45.000 5.01 0.00 0.00 5.36
3241 3413 1.066303 TGCGAATGAAACAACCCACAC 59.934 47.619 0.00 0.00 0.00 3.82
3269 3441 5.099042 AGTGCGAACTAATCCTATGGTTT 57.901 39.130 0.00 0.00 0.00 3.27
3370 3555 4.026052 AGGGGTAAGGAAAATGCAAGATG 58.974 43.478 0.00 0.00 0.00 2.90
3436 3621 3.446799 CCAATGCATGTTTGAATACCGG 58.553 45.455 0.00 0.00 0.00 5.28
3594 3779 4.904241 AGAGAATAACAACAGAGCTTGCT 58.096 39.130 0.00 0.00 0.00 3.91
3704 3890 6.760291 TCTCTTTTTGAACTAGAGTCCTTCC 58.240 40.000 0.00 0.00 37.33 3.46
3775 3961 1.271325 ACACACCGATTCTGAATGGCA 60.271 47.619 7.78 0.00 0.00 4.92
3875 4061 8.204160 TCTCTTCAAATGTCTTTGTAACTGAGA 58.796 33.333 0.00 0.00 42.02 3.27
3927 4113 4.930405 TGTGTCAAACTGAAACTGTACGAA 59.070 37.500 0.00 0.00 35.64 3.85
4008 4194 3.058870 AGCGTTGGCACGATTTGTCAG 62.059 52.381 12.46 0.00 44.36 3.51
4011 4197 3.744559 AGCGTTGGCACGATTTGT 58.255 50.000 12.46 0.00 44.36 2.83
4024 4210 6.582295 GTGAACAAATTAATCATCACAAGCGT 59.418 34.615 13.57 0.00 37.65 5.07
4025 4211 6.033831 GGTGAACAAATTAATCATCACAAGCG 59.966 38.462 17.36 0.00 39.06 4.68
4026 4212 6.033831 CGGTGAACAAATTAATCATCACAAGC 59.966 38.462 17.36 6.47 39.06 4.01
4038 4224 3.628032 TCACAAGTGCGGTGAACAAATTA 59.372 39.130 0.00 0.00 41.96 1.40
4051 4237 1.153706 GGCATGCCATCACAAGTGC 60.154 57.895 32.08 0.00 35.81 4.40
4052 4238 1.514087 GGGCATGCCATCACAAGTG 59.486 57.895 36.56 0.00 37.98 3.16
4078 4266 2.033424 GCTTTCACCACACTTTCCTCAC 59.967 50.000 0.00 0.00 0.00 3.51
4137 4325 7.396907 TCCACATTCAATGGTCTCAAAATATGT 59.603 33.333 1.58 0.00 38.47 2.29
4155 4343 6.071051 GGAGGGAGTAGATTCTATCCACATTC 60.071 46.154 16.99 11.34 33.24 2.67
4207 4396 8.568732 TCCAAACATAAGATCGTTTTTCAAAC 57.431 30.769 0.00 0.00 33.14 2.93
4208 4397 8.410141 ACTCCAAACATAAGATCGTTTTTCAAA 58.590 29.630 0.00 0.00 33.14 2.69
4226 4482 5.177725 ACGGTTTGACAATTACTCCAAAC 57.822 39.130 0.00 0.00 44.34 2.93
4232 4488 7.833786 TGAGTATCTACGGTTTGACAATTACT 58.166 34.615 0.00 0.00 34.92 2.24
4234 4490 9.491675 TTTTGAGTATCTACGGTTTGACAATTA 57.508 29.630 0.00 0.00 34.92 1.40
4235 4491 7.972832 TTTGAGTATCTACGGTTTGACAATT 57.027 32.000 0.00 0.00 34.92 2.32
4237 4493 7.972832 ATTTTGAGTATCTACGGTTTGACAA 57.027 32.000 0.00 0.00 34.92 3.18
4238 4494 7.118680 GGAATTTTGAGTATCTACGGTTTGACA 59.881 37.037 0.00 0.00 34.92 3.58
4240 4496 7.162761 TGGAATTTTGAGTATCTACGGTTTGA 58.837 34.615 0.00 0.00 34.92 2.69
4268 4533 3.052455 TGGCGCTTTCTGAATCACTTA 57.948 42.857 7.64 0.00 0.00 2.24
4287 4552 9.101655 TCAGTGTCATGTCACAGAAATAATATG 57.898 33.333 22.25 9.67 40.37 1.78
4311 4576 6.693315 AAAGTTGCTTACAGCTTAAAGTCA 57.307 33.333 6.66 3.40 45.44 3.41
4379 4663 7.201316 GGTGCGTTTTATGTCAATATGTTTGAC 60.201 37.037 13.56 13.56 46.57 3.18
4393 4677 6.910433 GGAATGTATAACTGGTGCGTTTTATG 59.090 38.462 0.00 0.00 0.00 1.90
4412 4698 5.776173 TGTAACCGTTTCAAATGGAATGT 57.224 34.783 15.79 0.30 40.11 2.71
4430 4716 1.102222 AAGCCACCCGCGTTTTGTAA 61.102 50.000 4.92 0.00 44.76 2.41
4471 4757 8.956426 GTAACATCTCATTTATTTGTGAGGGAA 58.044 33.333 2.90 0.00 41.64 3.97
4529 4816 5.565592 TGATGTTTCAGTGATTGGTATGC 57.434 39.130 0.00 0.00 0.00 3.14
4712 5029 5.208463 TGGTGCGCTATCATTTGTATCTA 57.792 39.130 9.73 0.00 0.00 1.98
4716 5033 2.877786 CCATGGTGCGCTATCATTTGTA 59.122 45.455 9.73 0.00 0.00 2.41
4727 5044 4.107051 GTGCTGTCCATGGTGCGC 62.107 66.667 12.58 16.57 0.00 6.09
4728 5045 1.794151 TTTGTGCTGTCCATGGTGCG 61.794 55.000 12.58 2.08 0.00 5.34
4745 5062 5.882557 ACGATGGATGTCAGATTAAAGCTTT 59.117 36.000 17.30 17.30 0.00 3.51
4753 5070 3.956848 TGAGAGACGATGGATGTCAGATT 59.043 43.478 0.00 0.00 38.83 2.40
4797 5114 6.163476 TCTACAGTACTTGCATACTTGTTGG 58.837 40.000 0.00 0.00 32.92 3.77
4815 5132 3.133691 TGCTGCAACAAGTCTTCTACAG 58.866 45.455 0.00 0.00 0.00 2.74
4816 5133 3.133691 CTGCTGCAACAAGTCTTCTACA 58.866 45.455 3.02 0.00 0.00 2.74
4817 5134 2.096019 GCTGCTGCAACAAGTCTTCTAC 60.096 50.000 11.11 0.00 39.41 2.59
4818 5135 2.146342 GCTGCTGCAACAAGTCTTCTA 58.854 47.619 11.11 0.00 39.41 2.10
4819 5136 0.950116 GCTGCTGCAACAAGTCTTCT 59.050 50.000 11.11 0.00 39.41 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.