Multiple sequence alignment - TraesCS1B01G282300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G282300 chr1B 100.000 3317 0 0 619 3935 491230797 491234113 0.000000e+00 6126.0
1 TraesCS1B01G282300 chr1B 100.000 417 0 0 1 417 491230179 491230595 0.000000e+00 771.0
2 TraesCS1B01G282300 chr1B 94.615 130 6 1 1862 1990 231617226 231617097 2.400000e-47 200.0
3 TraesCS1B01G282300 chr1B 88.816 152 13 4 1843 1993 642612087 642611939 2.420000e-42 183.0
4 TraesCS1B01G282300 chr1D 93.124 1338 51 25 1989 3304 366476061 366474743 0.000000e+00 1923.0
5 TraesCS1B01G282300 chr1D 91.073 1109 67 17 619 1709 366477354 366476260 0.000000e+00 1471.0
6 TraesCS1B01G282300 chr1D 89.254 335 30 6 3603 3935 366474757 366474427 7.870000e-112 414.0
7 TraesCS1B01G282300 chr1D 92.093 215 9 4 206 412 366477598 366477384 2.970000e-76 296.0
8 TraesCS1B01G282300 chr1D 90.789 152 7 4 1 146 366479462 366479312 3.100000e-46 196.0
9 TraesCS1B01G282300 chr1A 93.260 1187 42 17 2131 3304 465496630 465497791 0.000000e+00 1714.0
10 TraesCS1B01G282300 chr1A 89.779 949 58 21 619 1549 465495390 465496317 0.000000e+00 1179.0
11 TraesCS1B01G282300 chr1A 92.771 166 11 1 1535 1700 465496334 465496498 5.080000e-59 239.0
12 TraesCS1B01G282300 chr1A 89.071 183 10 6 244 416 465495178 465495360 6.620000e-53 219.0
13 TraesCS1B01G282300 chr1A 92.105 76 1 1 8 78 465494803 465494878 6.960000e-18 102.0
14 TraesCS1B01G282300 chr2A 88.968 281 29 2 3316 3594 43004516 43004236 2.910000e-91 346.0
15 TraesCS1B01G282300 chr2A 87.171 304 35 4 3303 3602 434579959 434580262 3.770000e-90 342.0
16 TraesCS1B01G282300 chr7D 88.235 289 32 2 3316 3602 629630985 629631273 1.050000e-90 344.0
17 TraesCS1B01G282300 chr7D 86.928 306 37 3 3299 3602 612881291 612881595 1.350000e-89 340.0
18 TraesCS1B01G282300 chr3D 86.971 307 34 5 3300 3602 582266683 582266379 1.350000e-89 340.0
19 TraesCS1B01G282300 chr3D 90.783 217 15 5 2365 2577 486050780 486050565 6.440000e-73 285.0
20 TraesCS1B01G282300 chr3D 85.897 78 6 4 1118 1193 486052345 486052271 1.170000e-10 78.7
21 TraesCS1B01G282300 chr4D 86.842 304 38 2 3302 3603 226455039 226455342 4.870000e-89 339.0
22 TraesCS1B01G282300 chr4D 86.557 305 38 3 3302 3603 226384946 226385250 2.270000e-87 333.0
23 TraesCS1B01G282300 chr4B 85.075 335 43 7 3282 3610 814082 814415 6.300000e-88 335.0
24 TraesCS1B01G282300 chr4B 93.382 136 8 1 1863 1997 82019120 82019255 2.400000e-47 200.0
25 TraesCS1B01G282300 chr4B 92.701 137 9 1 1864 1999 601197186 601197322 3.100000e-46 196.0
26 TraesCS1B01G282300 chr5B 86.755 302 37 3 3303 3602 229081973 229081673 2.270000e-87 333.0
27 TraesCS1B01G282300 chr3A 90.741 216 15 5 2366 2577 629228106 629227892 2.310000e-72 283.0
28 TraesCS1B01G282300 chr3A 93.284 134 7 2 1863 1994 84695354 84695487 3.100000e-46 196.0
29 TraesCS1B01G282300 chr3B 89.815 216 17 5 2366 2577 648747022 648746808 5.010000e-69 272.0
30 TraesCS1B01G282300 chr3B 88.462 156 16 2 1857 2010 668137082 668137237 1.870000e-43 187.0
31 TraesCS1B01G282300 chr3B 85.897 78 6 4 1118 1193 648748936 648748862 1.170000e-10 78.7
32 TraesCS1B01G282300 chr5D 93.939 132 7 1 1863 1993 76219915 76220046 8.620000e-47 198.0
33 TraesCS1B01G282300 chr7B 92.701 137 8 2 1865 2000 126549225 126549090 3.100000e-46 196.0
34 TraesCS1B01G282300 chr2B 93.233 133 8 1 1864 1995 517437010 517436878 1.120000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G282300 chr1B 491230179 491234113 3934 False 3448.5 6126 100.0000 1 3935 2 chr1B.!!$F1 3934
1 TraesCS1B01G282300 chr1D 366474427 366479462 5035 True 860.0 1923 91.2666 1 3935 5 chr1D.!!$R1 3934
2 TraesCS1B01G282300 chr1A 465494803 465497791 2988 False 690.6 1714 91.3972 8 3304 5 chr1A.!!$F1 3296


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 2204 0.108615 CGGTCTCTGATCGCCAAGTT 60.109 55.0 0.00 0.0 26.8 2.66 F
856 2712 0.400975 ATCCCTGATCTCATGCCTGC 59.599 55.0 0.00 0.0 0.0 4.85 F
1585 3493 0.598065 ATCCCTTTGCTTGCAACGAC 59.402 50.0 12.41 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 3866 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 R
1867 3869 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
3340 5369 0.031585 GGGATGAGTGTATGCGCGTA 59.968 55.0 8.43 4.92 0.00 4.42 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 330 6.094603 GTCTATCGAAATCCGTAGCCCTAATA 59.905 42.308 0.00 0.00 39.75 0.98
147 331 5.733620 ATCGAAATCCGTAGCCCTAATAA 57.266 39.130 0.00 0.00 39.75 1.40
149 333 5.475719 TCGAAATCCGTAGCCCTAATAATG 58.524 41.667 0.00 0.00 39.75 1.90
151 335 6.070995 TCGAAATCCGTAGCCCTAATAATGAT 60.071 38.462 0.00 0.00 39.75 2.45
152 336 6.255887 CGAAATCCGTAGCCCTAATAATGATC 59.744 42.308 0.00 0.00 0.00 2.92
153 337 5.615925 ATCCGTAGCCCTAATAATGATCC 57.384 43.478 0.00 0.00 0.00 3.36
155 339 3.446161 CCGTAGCCCTAATAATGATCCGA 59.554 47.826 0.00 0.00 0.00 4.55
156 340 4.081862 CCGTAGCCCTAATAATGATCCGAA 60.082 45.833 0.00 0.00 0.00 4.30
157 341 5.395324 CCGTAGCCCTAATAATGATCCGAAT 60.395 44.000 0.00 0.00 0.00 3.34
176 2003 7.866729 TCCGAATAAAATACCGTATACGTACA 58.133 34.615 22.87 8.61 37.74 2.90
189 2016 8.765219 ACCGTATACGTACAGTACTATTACAAG 58.235 37.037 22.87 4.52 38.29 3.16
201 2028 8.730680 CAGTACTATTACAAGGTTTTGAGCATT 58.269 33.333 0.00 0.00 37.73 3.56
262 2101 3.002656 CCAGTTTGACTTGCTGTACAGTG 59.997 47.826 23.44 15.78 0.00 3.66
326 2168 1.868997 CGGCTGAAACAATGCGTCT 59.131 52.632 0.00 0.00 0.00 4.18
333 2175 4.787563 GCTGAAACAATGCGTCTATCCATG 60.788 45.833 0.00 0.00 0.00 3.66
343 2192 3.078097 CGTCTATCCATGATCGGTCTCT 58.922 50.000 0.00 0.00 0.00 3.10
355 2204 0.108615 CGGTCTCTGATCGCCAAGTT 60.109 55.000 0.00 0.00 26.80 2.66
416 2265 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
697 2546 1.626321 TCCAAATCTGAACCACGCCTA 59.374 47.619 0.00 0.00 0.00 3.93
772 2627 0.801067 GCTTAGCGTGGACACCGTAG 60.801 60.000 0.00 0.00 0.00 3.51
810 2666 3.307242 GCGCATTACATCTTCTTCTTCGT 59.693 43.478 0.30 0.00 0.00 3.85
813 2669 5.276114 CGCATTACATCTTCTTCTTCGTCTG 60.276 44.000 0.00 0.00 0.00 3.51
822 2678 4.017177 TCTTCTTCGTCTGGTCTACTCA 57.983 45.455 0.00 0.00 0.00 3.41
830 2686 3.062369 CGTCTGGTCTACTCAAGTACTCG 59.938 52.174 0.00 0.00 0.00 4.18
840 2696 2.359531 CTCAAGTACTCGTCCTCCATCC 59.640 54.545 0.00 0.00 0.00 3.51
856 2712 0.400975 ATCCCTGATCTCATGCCTGC 59.599 55.000 0.00 0.00 0.00 4.85
859 2715 1.158484 CCTGATCTCATGCCTGCGTG 61.158 60.000 4.96 4.96 0.00 5.34
860 2716 1.773054 CTGATCTCATGCCTGCGTGC 61.773 60.000 6.47 0.00 33.28 5.34
861 2717 2.879070 GATCTCATGCCTGCGTGCG 61.879 63.158 6.47 0.68 33.28 5.34
898 2754 2.266055 CAGTCCCCCTCGTGAAGC 59.734 66.667 0.00 0.00 0.00 3.86
931 2791 1.903500 AGCCAGCTAGTGGATCCAAGT 60.904 52.381 18.20 9.70 43.56 3.16
958 2818 7.013083 TGAGAGTACTTTGAACTCGAACTAGTT 59.987 37.037 8.13 8.13 46.46 2.24
959 2819 8.388484 AGAGTACTTTGAACTCGAACTAGTTA 57.612 34.615 8.42 0.00 46.46 2.24
960 2820 8.505625 AGAGTACTTTGAACTCGAACTAGTTAG 58.494 37.037 8.42 8.89 46.46 2.34
961 2821 7.083230 AGTACTTTGAACTCGAACTAGTTAGC 58.917 38.462 8.42 0.00 39.78 3.09
1308 3180 4.440880 CAGGTGAGGATTGAGACTCATTC 58.559 47.826 15.90 15.90 44.65 2.67
1311 3183 2.159043 TGAGGATTGAGACTCATTCCGC 60.159 50.000 28.93 28.93 46.25 5.54
1374 3252 3.033764 CGGTGTCACCACGTTCCG 61.034 66.667 21.91 2.04 42.80 4.30
1378 3256 0.599204 GTGTCACCACGTTCCGACAT 60.599 55.000 12.33 0.00 40.27 3.06
1480 3358 0.682292 TCCCGTGCATGTGTTAGTCA 59.318 50.000 4.96 0.00 0.00 3.41
1483 3361 2.345876 CCGTGCATGTGTTAGTCATGA 58.654 47.619 4.96 0.00 43.47 3.07
1585 3493 0.598065 ATCCCTTTGCTTGCAACGAC 59.402 50.000 12.41 0.00 0.00 4.34
1602 3510 2.740055 CAGGAGTGCCACGTCAGC 60.740 66.667 0.04 0.04 36.29 4.26
1603 3511 4.008933 AGGAGTGCCACGTCAGCC 62.009 66.667 4.72 0.00 36.29 4.85
1662 3570 1.033202 CCACTGCCATGCATGCACTA 61.033 55.000 25.37 8.64 38.13 2.74
1690 3598 1.395608 CGACCGTTATTGACCGCAAAT 59.604 47.619 0.00 0.00 37.59 2.32
1691 3599 2.159626 CGACCGTTATTGACCGCAAATT 60.160 45.455 0.00 0.00 37.59 1.82
1714 3702 2.746904 TGCATTTCGTTATGTCCCAGTG 59.253 45.455 0.00 0.00 0.00 3.66
1715 3703 3.006940 GCATTTCGTTATGTCCCAGTGA 58.993 45.455 0.00 0.00 0.00 3.41
1723 3711 4.212004 CGTTATGTCCCAGTGAATGCTATG 59.788 45.833 0.00 0.00 0.00 2.23
1727 3715 2.609459 GTCCCAGTGAATGCTATGTTCG 59.391 50.000 0.00 0.00 0.00 3.95
1730 3718 2.223112 CCAGTGAATGCTATGTTCGTGC 60.223 50.000 0.00 0.00 0.00 5.34
1850 3852 9.045745 AGAGAGAAGGAAAAATGAGAGAATACT 57.954 33.333 0.00 0.00 0.00 2.12
1851 3853 9.313118 GAGAGAAGGAAAAATGAGAGAATACTC 57.687 37.037 0.00 0.00 42.90 2.59
1852 3854 8.264347 AGAGAAGGAAAAATGAGAGAATACTCC 58.736 37.037 0.00 0.00 43.53 3.85
1853 3855 8.156822 AGAAGGAAAAATGAGAGAATACTCCT 57.843 34.615 0.00 0.00 43.53 3.69
1854 3856 9.273137 AGAAGGAAAAATGAGAGAATACTCCTA 57.727 33.333 0.00 0.00 43.53 2.94
1855 3857 9.320352 GAAGGAAAAATGAGAGAATACTCCTAC 57.680 37.037 0.00 0.00 43.53 3.18
1856 3858 7.797062 AGGAAAAATGAGAGAATACTCCTACC 58.203 38.462 0.00 0.00 43.53 3.18
1857 3859 7.403231 AGGAAAAATGAGAGAATACTCCTACCA 59.597 37.037 0.00 0.00 43.53 3.25
1858 3860 8.047310 GGAAAAATGAGAGAATACTCCTACCAA 58.953 37.037 0.00 0.00 43.53 3.67
1859 3861 9.449719 GAAAAATGAGAGAATACTCCTACCAAA 57.550 33.333 0.00 0.00 43.53 3.28
1860 3862 8.794335 AAAATGAGAGAATACTCCTACCAAAC 57.206 34.615 0.00 0.00 43.53 2.93
1861 3863 7.741554 AATGAGAGAATACTCCTACCAAACT 57.258 36.000 0.00 0.00 43.53 2.66
1862 3864 8.840200 AATGAGAGAATACTCCTACCAAACTA 57.160 34.615 0.00 0.00 43.53 2.24
1863 3865 7.883391 TGAGAGAATACTCCTACCAAACTAG 57.117 40.000 0.00 0.00 43.53 2.57
1864 3866 7.411808 TGAGAGAATACTCCTACCAAACTAGT 58.588 38.462 0.00 0.00 43.53 2.57
1865 3867 8.554870 TGAGAGAATACTCCTACCAAACTAGTA 58.445 37.037 0.00 0.00 43.53 1.82
1866 3868 8.750515 AGAGAATACTCCTACCAAACTAGTAC 57.249 38.462 0.00 0.00 43.53 2.73
1867 3869 8.559175 AGAGAATACTCCTACCAAACTAGTACT 58.441 37.037 0.00 0.00 43.53 2.73
1868 3870 8.750515 AGAATACTCCTACCAAACTAGTACTC 57.249 38.462 0.00 0.00 0.00 2.59
1869 3871 7.779326 AGAATACTCCTACCAAACTAGTACTCC 59.221 40.741 0.00 0.00 0.00 3.85
1870 3872 4.608269 ACTCCTACCAAACTAGTACTCCC 58.392 47.826 0.00 0.00 0.00 4.30
1871 3873 4.294435 ACTCCTACCAAACTAGTACTCCCT 59.706 45.833 0.00 0.00 0.00 4.20
1872 3874 4.864726 TCCTACCAAACTAGTACTCCCTC 58.135 47.826 0.00 0.00 0.00 4.30
1873 3875 3.959449 CCTACCAAACTAGTACTCCCTCC 59.041 52.174 0.00 0.00 0.00 4.30
1874 3876 2.454538 ACCAAACTAGTACTCCCTCCG 58.545 52.381 0.00 0.00 0.00 4.63
1875 3877 2.225217 ACCAAACTAGTACTCCCTCCGT 60.225 50.000 0.00 0.00 0.00 4.69
1876 3878 2.426381 CCAAACTAGTACTCCCTCCGTC 59.574 54.545 0.00 0.00 0.00 4.79
1877 3879 2.426381 CAAACTAGTACTCCCTCCGTCC 59.574 54.545 0.00 0.00 0.00 4.79
1878 3880 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
1879 3881 0.534652 CTAGTACTCCCTCCGTCCGG 60.535 65.000 0.00 0.00 0.00 5.14
1880 3882 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
1881 3883 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1882 3884 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1883 3885 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1884 3886 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1885 3887 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1886 3888 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1887 3889 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1888 3890 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1889 3891 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1890 3892 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1891 3893 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1892 3894 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1893 3895 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
1894 3896 4.160065 TCCGTCCGGAAATACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
1895 3897 4.871557 CCGTCCGGAAATACTTGTCATTAA 59.128 41.667 5.23 0.00 37.50 1.40
1896 3898 5.352016 CCGTCCGGAAATACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
1897 3899 6.128227 CCGTCCGGAAATACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
1898 3900 7.414762 CCGTCCGGAAATACTTGTCATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
1899 3901 7.428183 CGTCCGGAAATACTTGTCATTAAAATG 59.572 37.037 5.23 0.00 37.75 2.32
1900 3902 8.455682 GTCCGGAAATACTTGTCATTAAAATGA 58.544 33.333 5.23 1.23 42.78 2.57
1901 3903 9.015367 TCCGGAAATACTTGTCATTAAAATGAA 57.985 29.630 0.00 0.00 46.13 2.57
1902 3904 9.801873 CCGGAAATACTTGTCATTAAAATGAAT 57.198 29.630 6.95 0.00 46.13 2.57
1910 3912 8.096414 ACTTGTCATTAAAATGAATGAAAGGGG 58.904 33.333 6.95 5.82 46.13 4.79
1911 3913 7.789202 TGTCATTAAAATGAATGAAAGGGGA 57.211 32.000 6.95 0.00 46.13 4.81
1912 3914 8.378115 TGTCATTAAAATGAATGAAAGGGGAT 57.622 30.769 6.95 0.00 46.13 3.85
1913 3915 8.259411 TGTCATTAAAATGAATGAAAGGGGATG 58.741 33.333 6.95 0.00 46.13 3.51
1914 3916 8.260114 GTCATTAAAATGAATGAAAGGGGATGT 58.740 33.333 6.95 0.00 46.13 3.06
1915 3917 9.486123 TCATTAAAATGAATGAAAGGGGATGTA 57.514 29.630 2.91 0.00 41.70 2.29
1918 3920 9.713684 TTAAAATGAATGAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
1920 3922 8.930846 AAATGAATGAAAGGGGATGTATCTAG 57.069 34.615 0.00 0.00 0.00 2.43
1921 3923 7.878621 ATGAATGAAAGGGGATGTATCTAGA 57.121 36.000 0.00 0.00 0.00 2.43
1922 3924 7.878621 TGAATGAAAGGGGATGTATCTAGAT 57.121 36.000 10.73 10.73 0.00 1.98
1923 3925 7.683578 TGAATGAAAGGGGATGTATCTAGATG 58.316 38.462 15.79 0.00 0.00 2.90
1924 3926 7.293299 TGAATGAAAGGGGATGTATCTAGATGT 59.707 37.037 15.79 1.25 0.00 3.06
1925 3927 8.742125 AATGAAAGGGGATGTATCTAGATGTA 57.258 34.615 15.79 4.44 0.00 2.29
1926 3928 8.923838 ATGAAAGGGGATGTATCTAGATGTAT 57.076 34.615 15.79 9.11 0.00 2.29
1927 3929 8.742125 TGAAAGGGGATGTATCTAGATGTATT 57.258 34.615 15.79 0.00 0.00 1.89
1928 3930 9.170890 TGAAAGGGGATGTATCTAGATGTATTT 57.829 33.333 15.79 5.17 0.00 1.40
1945 3947 9.678260 AGATGTATTTTAATCCTAGATGCATCC 57.322 33.333 23.06 5.58 39.26 3.51
1946 3948 9.678260 GATGTATTTTAATCCTAGATGCATCCT 57.322 33.333 23.06 12.70 35.30 3.24
1948 3950 9.866655 TGTATTTTAATCCTAGATGCATCCTTT 57.133 29.630 23.06 7.62 0.00 3.11
1952 3954 8.593945 TTTAATCCTAGATGCATCCTTTTTGT 57.406 30.769 23.06 5.34 0.00 2.83
1953 3955 8.593945 TTAATCCTAGATGCATCCTTTTTGTT 57.406 30.769 23.06 11.68 0.00 2.83
1954 3956 6.705863 ATCCTAGATGCATCCTTTTTGTTC 57.294 37.500 23.06 0.00 0.00 3.18
1955 3957 5.569355 TCCTAGATGCATCCTTTTTGTTCA 58.431 37.500 23.06 0.00 0.00 3.18
1956 3958 6.189859 TCCTAGATGCATCCTTTTTGTTCAT 58.810 36.000 23.06 2.56 0.00 2.57
1957 3959 6.664816 TCCTAGATGCATCCTTTTTGTTCATT 59.335 34.615 23.06 2.35 0.00 2.57
1958 3960 7.178983 TCCTAGATGCATCCTTTTTGTTCATTT 59.821 33.333 23.06 1.91 0.00 2.32
1959 3961 7.820872 CCTAGATGCATCCTTTTTGTTCATTTT 59.179 33.333 23.06 1.25 0.00 1.82
1960 3962 9.859427 CTAGATGCATCCTTTTTGTTCATTTTA 57.141 29.630 23.06 2.39 0.00 1.52
1962 3964 9.729281 AGATGCATCCTTTTTGTTCATTTTAAT 57.271 25.926 23.06 0.00 0.00 1.40
1963 3965 9.763465 GATGCATCCTTTTTGTTCATTTTAATG 57.237 29.630 16.23 0.00 37.75 1.90
1964 3966 8.097078 TGCATCCTTTTTGTTCATTTTAATGG 57.903 30.769 2.85 0.00 37.03 3.16
1965 3967 7.022979 GCATCCTTTTTGTTCATTTTAATGGC 58.977 34.615 2.85 0.00 37.03 4.40
1966 3968 7.308469 GCATCCTTTTTGTTCATTTTAATGGCA 60.308 33.333 0.00 0.00 37.03 4.92
1967 3969 8.566260 CATCCTTTTTGTTCATTTTAATGGCAA 58.434 29.630 0.00 6.11 37.03 4.52
1968 3970 8.152309 TCCTTTTTGTTCATTTTAATGGCAAG 57.848 30.769 0.00 0.00 37.03 4.01
1969 3971 7.772757 TCCTTTTTGTTCATTTTAATGGCAAGT 59.227 29.630 0.00 0.00 37.03 3.16
1970 3972 9.050601 CCTTTTTGTTCATTTTAATGGCAAGTA 57.949 29.630 0.00 0.00 37.03 2.24
1976 3978 8.920665 TGTTCATTTTAATGGCAAGTATTTTCG 58.079 29.630 0.00 0.00 37.03 3.46
1977 3979 8.379902 GTTCATTTTAATGGCAAGTATTTTCGG 58.620 33.333 0.00 0.00 37.03 4.30
1978 3980 7.831753 TCATTTTAATGGCAAGTATTTTCGGA 58.168 30.769 0.00 0.00 37.03 4.55
1979 3981 7.757624 TCATTTTAATGGCAAGTATTTTCGGAC 59.242 33.333 0.00 0.00 37.03 4.79
1980 3982 3.757745 AATGGCAAGTATTTTCGGACG 57.242 42.857 0.00 0.00 0.00 4.79
1981 3983 1.444836 TGGCAAGTATTTTCGGACGG 58.555 50.000 0.00 0.00 0.00 4.79
1982 3984 1.002201 TGGCAAGTATTTTCGGACGGA 59.998 47.619 0.00 0.00 0.00 4.69
1983 3985 1.664151 GGCAAGTATTTTCGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
1984 3986 1.664151 GCAAGTATTTTCGGACGGAGG 59.336 52.381 0.00 0.00 0.00 4.30
1985 3987 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1986 3988 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1987 3989 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1994 3996 0.526662 CGGACGGAGGGAGTATATGC 59.473 60.000 0.00 0.00 0.00 3.14
2028 4030 4.536065 CACTCGTGCAACACAACAAATAT 58.464 39.130 0.00 0.00 35.74 1.28
2040 4043 3.211045 CAACAAATATACCACCTCCCCG 58.789 50.000 0.00 0.00 0.00 5.73
2059 4062 3.494223 CCCGATGTATACCAGCACATGAA 60.494 47.826 0.00 0.00 35.55 2.57
2106 4109 1.080093 GCCGGTCGACACAGATGAA 60.080 57.895 18.91 0.00 0.00 2.57
2121 4124 2.047769 GATGAACGCATCTCTCGCTAC 58.952 52.381 0.00 0.00 45.93 3.58
2124 4127 2.159240 TGAACGCATCTCTCGCTACATT 60.159 45.455 0.00 0.00 0.00 2.71
2125 4128 3.066203 TGAACGCATCTCTCGCTACATTA 59.934 43.478 0.00 0.00 0.00 1.90
2126 4129 3.924918 ACGCATCTCTCGCTACATTAT 57.075 42.857 0.00 0.00 0.00 1.28
2127 4130 5.048991 TGAACGCATCTCTCGCTACATTATA 60.049 40.000 0.00 0.00 0.00 0.98
2128 4131 5.568685 ACGCATCTCTCGCTACATTATAT 57.431 39.130 0.00 0.00 0.00 0.86
2315 4333 3.174573 GTACCCGCACACGTACGC 61.175 66.667 16.72 0.00 37.70 4.42
2746 4770 0.394080 CTCTTCGGGGTCCTACTCGT 60.394 60.000 0.00 0.00 0.00 4.18
2766 4790 2.701780 CCCGGAGTCCTCTGTGACG 61.702 68.421 0.73 0.00 40.26 4.35
2960 4984 5.969435 GGTCCGTTTCTTGTTTACTTTTCTG 59.031 40.000 0.00 0.00 0.00 3.02
2964 4988 6.020678 CCGTTTCTTGTTTACTTTTCTGCTTG 60.021 38.462 0.00 0.00 0.00 4.01
2982 5007 3.621794 CTTGAAGAAAAGAGTTGCCGTG 58.378 45.455 0.00 0.00 0.00 4.94
2992 5017 1.961277 GTTGCCGTGACACTGGGAG 60.961 63.158 15.24 0.00 0.00 4.30
3079 5107 4.254709 AAGCCAGAGCACGCCACA 62.255 61.111 0.00 0.00 43.56 4.17
3135 5163 5.686841 TCGCTTTGTTGATGTTGAAAATCAG 59.313 36.000 0.00 0.00 35.54 2.90
3141 5169 6.279882 TGTTGATGTTGAAAATCAGGTTTCC 58.720 36.000 0.00 0.00 36.80 3.13
3142 5170 5.467035 TGATGTTGAAAATCAGGTTTCCC 57.533 39.130 0.00 0.00 36.80 3.97
3148 5176 5.545063 TGAAAATCAGGTTTCCCTTTTCC 57.455 39.130 0.00 0.00 39.89 3.13
3160 5188 8.210946 AGGTTTCCCTTTTCCTTTTAAATGAAG 58.789 33.333 2.77 0.00 38.13 3.02
3281 5310 9.981114 AAATAAAGAAAGGTTATTCACAGTTGG 57.019 29.630 0.00 0.00 31.46 3.77
3294 5323 5.835113 TCACAGTTGGAGAAAGAAAAAGG 57.165 39.130 0.00 0.00 0.00 3.11
3304 5333 5.874810 GGAGAAAGAAAAAGGCAAGTTGTTT 59.125 36.000 4.48 0.00 0.00 2.83
3305 5334 6.371548 GGAGAAAGAAAAAGGCAAGTTGTTTT 59.628 34.615 4.48 3.71 0.00 2.43
3313 5342 9.325150 GAAAAAGGCAAGTTGTTTTTCTTTAAC 57.675 29.630 23.83 8.67 42.76 2.01
3314 5343 6.641176 AAGGCAAGTTGTTTTTCTTTAACG 57.359 33.333 4.48 0.00 0.00 3.18
3315 5344 4.565166 AGGCAAGTTGTTTTTCTTTAACGC 59.435 37.500 4.48 0.00 0.00 4.84
3316 5345 4.327627 GGCAAGTTGTTTTTCTTTAACGCA 59.672 37.500 4.48 0.00 0.00 5.24
3317 5346 5.480603 GCAAGTTGTTTTTCTTTAACGCAG 58.519 37.500 4.48 0.00 0.00 5.18
3319 5348 6.251801 GCAAGTTGTTTTTCTTTAACGCAGTA 59.748 34.615 4.48 0.00 45.00 2.74
3320 5349 7.597441 CAAGTTGTTTTTCTTTAACGCAGTAC 58.403 34.615 0.00 0.00 45.00 2.73
3321 5350 6.844254 AGTTGTTTTTCTTTAACGCAGTACA 58.156 32.000 0.00 0.00 45.00 2.90
3322 5351 6.964934 AGTTGTTTTTCTTTAACGCAGTACAG 59.035 34.615 0.00 0.00 45.00 2.74
3323 5352 6.665474 TGTTTTTCTTTAACGCAGTACAGA 57.335 33.333 0.00 0.00 45.00 3.41
3324 5353 6.480285 TGTTTTTCTTTAACGCAGTACAGAC 58.520 36.000 0.00 0.00 45.00 3.51
3325 5354 5.662211 TTTTCTTTAACGCAGTACAGACC 57.338 39.130 0.00 0.00 45.00 3.85
3326 5355 3.308438 TCTTTAACGCAGTACAGACCC 57.692 47.619 0.00 0.00 45.00 4.46
3327 5356 2.629137 TCTTTAACGCAGTACAGACCCA 59.371 45.455 0.00 0.00 45.00 4.51
3328 5357 3.069872 TCTTTAACGCAGTACAGACCCAA 59.930 43.478 0.00 0.00 45.00 4.12
3329 5358 3.472283 TTAACGCAGTACAGACCCAAA 57.528 42.857 0.00 0.00 45.00 3.28
3330 5359 1.589803 AACGCAGTACAGACCCAAAC 58.410 50.000 0.00 0.00 45.00 2.93
3331 5360 0.599204 ACGCAGTACAGACCCAAACG 60.599 55.000 0.00 0.00 41.94 3.60
3332 5361 1.866925 GCAGTACAGACCCAAACGC 59.133 57.895 0.00 0.00 0.00 4.84
3333 5362 0.602905 GCAGTACAGACCCAAACGCT 60.603 55.000 0.00 0.00 0.00 5.07
3334 5363 1.429463 CAGTACAGACCCAAACGCTC 58.571 55.000 0.00 0.00 0.00 5.03
3335 5364 0.038526 AGTACAGACCCAAACGCTCG 60.039 55.000 0.00 0.00 0.00 5.03
3336 5365 1.373748 TACAGACCCAAACGCTCGC 60.374 57.895 0.00 0.00 0.00 5.03
3337 5366 2.089887 TACAGACCCAAACGCTCGCA 62.090 55.000 0.00 0.00 0.00 5.10
3338 5367 2.665185 AGACCCAAACGCTCGCAC 60.665 61.111 0.00 0.00 0.00 5.34
3339 5368 2.970324 GACCCAAACGCTCGCACA 60.970 61.111 0.00 0.00 0.00 4.57
3340 5369 2.281484 ACCCAAACGCTCGCACAT 60.281 55.556 0.00 0.00 0.00 3.21
3341 5370 1.004320 ACCCAAACGCTCGCACATA 60.004 52.632 0.00 0.00 0.00 2.29
3342 5371 1.296056 ACCCAAACGCTCGCACATAC 61.296 55.000 0.00 0.00 0.00 2.39
3343 5372 1.058748 CCAAACGCTCGCACATACG 59.941 57.895 0.00 0.00 0.00 3.06
3344 5373 1.577616 CAAACGCTCGCACATACGC 60.578 57.895 0.00 0.00 0.00 4.42
3352 5381 4.872476 GCACATACGCGCATACAC 57.128 55.556 5.73 0.00 0.00 2.90
3353 5382 2.297625 GCACATACGCGCATACACT 58.702 52.632 5.73 0.00 0.00 3.55
3354 5383 0.229753 GCACATACGCGCATACACTC 59.770 55.000 5.73 0.00 0.00 3.51
3355 5384 1.555477 CACATACGCGCATACACTCA 58.445 50.000 5.73 0.00 0.00 3.41
3356 5385 2.127251 CACATACGCGCATACACTCAT 58.873 47.619 5.73 0.00 0.00 2.90
3357 5386 2.153817 CACATACGCGCATACACTCATC 59.846 50.000 5.73 0.00 0.00 2.92
3358 5387 1.721389 CATACGCGCATACACTCATCC 59.279 52.381 5.73 0.00 0.00 3.51
3359 5388 0.031585 TACGCGCATACACTCATCCC 59.968 55.000 5.73 0.00 0.00 3.85
3360 5389 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
3361 5390 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
3362 5391 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
3363 5392 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
3364 5393 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
3365 5394 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
3366 5395 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
3367 5396 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
3368 5397 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
3369 5398 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
3370 5399 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
3371 5400 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
3372 5401 2.236146 ACTCATCCCTATGAACGCACAA 59.764 45.455 0.00 0.00 41.57 3.33
3373 5402 3.270027 CTCATCCCTATGAACGCACAAA 58.730 45.455 0.00 0.00 41.57 2.83
3374 5403 3.006940 TCATCCCTATGAACGCACAAAC 58.993 45.455 0.00 0.00 39.20 2.93
3375 5404 1.434555 TCCCTATGAACGCACAAACG 58.565 50.000 0.00 0.00 39.50 3.60
3376 5405 0.179200 CCCTATGAACGCACAAACGC 60.179 55.000 0.00 0.00 36.19 4.84
3377 5406 0.515127 CCTATGAACGCACAAACGCA 59.485 50.000 0.00 0.00 36.19 5.24
3378 5407 1.130373 CCTATGAACGCACAAACGCAT 59.870 47.619 0.00 0.00 36.19 4.73
3379 5408 2.350192 CCTATGAACGCACAAACGCATA 59.650 45.455 0.00 0.00 36.19 3.14
3380 5409 2.241259 ATGAACGCACAAACGCATAC 57.759 45.000 0.00 0.00 36.19 2.39
3381 5410 0.236187 TGAACGCACAAACGCATACC 59.764 50.000 0.00 0.00 36.19 2.73
3382 5411 0.453782 GAACGCACAAACGCATACCC 60.454 55.000 0.00 0.00 36.19 3.69
3383 5412 0.887387 AACGCACAAACGCATACCCT 60.887 50.000 0.00 0.00 36.19 4.34
3384 5413 0.037139 ACGCACAAACGCATACCCTA 60.037 50.000 0.00 0.00 36.19 3.53
3385 5414 1.295792 CGCACAAACGCATACCCTAT 58.704 50.000 0.00 0.00 0.00 2.57
3386 5415 1.260561 CGCACAAACGCATACCCTATC 59.739 52.381 0.00 0.00 0.00 2.08
3387 5416 1.602377 GCACAAACGCATACCCTATCC 59.398 52.381 0.00 0.00 0.00 2.59
3388 5417 2.745152 GCACAAACGCATACCCTATCCT 60.745 50.000 0.00 0.00 0.00 3.24
3389 5418 3.493699 GCACAAACGCATACCCTATCCTA 60.494 47.826 0.00 0.00 0.00 2.94
3390 5419 4.056050 CACAAACGCATACCCTATCCTAC 58.944 47.826 0.00 0.00 0.00 3.18
3391 5420 3.243636 ACAAACGCATACCCTATCCTACG 60.244 47.826 0.00 0.00 0.00 3.51
3392 5421 2.574006 ACGCATACCCTATCCTACGA 57.426 50.000 0.00 0.00 0.00 3.43
3393 5422 2.434428 ACGCATACCCTATCCTACGAG 58.566 52.381 0.00 0.00 0.00 4.18
3394 5423 1.132643 CGCATACCCTATCCTACGAGC 59.867 57.143 0.00 0.00 0.00 5.03
3395 5424 2.168496 GCATACCCTATCCTACGAGCA 58.832 52.381 0.00 0.00 0.00 4.26
3396 5425 2.094649 GCATACCCTATCCTACGAGCAC 60.095 54.545 0.00 0.00 0.00 4.40
3397 5426 2.283145 TACCCTATCCTACGAGCACC 57.717 55.000 0.00 0.00 0.00 5.01
3398 5427 0.556747 ACCCTATCCTACGAGCACCT 59.443 55.000 0.00 0.00 0.00 4.00
3399 5428 1.249407 CCCTATCCTACGAGCACCTC 58.751 60.000 0.00 0.00 0.00 3.85
3400 5429 1.249407 CCTATCCTACGAGCACCTCC 58.751 60.000 0.00 0.00 0.00 4.30
3401 5430 0.875728 CTATCCTACGAGCACCTCCG 59.124 60.000 0.00 0.00 0.00 4.63
3402 5431 0.536687 TATCCTACGAGCACCTCCGG 60.537 60.000 0.00 0.00 0.00 5.14
3403 5432 2.280404 ATCCTACGAGCACCTCCGGA 62.280 60.000 2.93 2.93 0.00 5.14
3404 5433 2.050350 CCTACGAGCACCTCCGGAA 61.050 63.158 5.23 0.00 0.00 4.30
3405 5434 1.601419 CCTACGAGCACCTCCGGAAA 61.601 60.000 5.23 0.00 0.00 3.13
3406 5435 0.245539 CTACGAGCACCTCCGGAAAA 59.754 55.000 5.23 0.00 0.00 2.29
3407 5436 0.037975 TACGAGCACCTCCGGAAAAC 60.038 55.000 5.23 0.00 0.00 2.43
3408 5437 1.004918 CGAGCACCTCCGGAAAACT 60.005 57.895 5.23 0.00 0.00 2.66
3409 5438 1.291877 CGAGCACCTCCGGAAAACTG 61.292 60.000 5.23 0.00 0.00 3.16
3410 5439 0.034896 GAGCACCTCCGGAAAACTGA 59.965 55.000 5.23 0.00 0.00 3.41
3411 5440 0.035458 AGCACCTCCGGAAAACTGAG 59.965 55.000 5.23 0.00 0.00 3.35
3412 5441 1.578206 GCACCTCCGGAAAACTGAGC 61.578 60.000 5.23 0.00 0.00 4.26
3413 5442 0.955919 CACCTCCGGAAAACTGAGCC 60.956 60.000 5.23 0.00 0.00 4.70
3414 5443 1.741770 CCTCCGGAAAACTGAGCCG 60.742 63.158 5.23 0.00 44.42 5.52
3417 5446 2.668212 CGGAAAACTGAGCCGGCA 60.668 61.111 31.54 7.98 41.29 5.69
3418 5447 2.040544 CGGAAAACTGAGCCGGCAT 61.041 57.895 31.54 14.28 41.29 4.40
3419 5448 0.742990 CGGAAAACTGAGCCGGCATA 60.743 55.000 31.54 16.21 41.29 3.14
3420 5449 1.680338 GGAAAACTGAGCCGGCATAT 58.320 50.000 31.54 8.11 0.00 1.78
3421 5450 1.604278 GGAAAACTGAGCCGGCATATC 59.396 52.381 31.54 18.63 0.00 1.63
3422 5451 2.288666 GAAAACTGAGCCGGCATATCA 58.711 47.619 31.54 22.44 0.00 2.15
3423 5452 2.645838 AAACTGAGCCGGCATATCAT 57.354 45.000 31.54 6.18 0.00 2.45
3424 5453 2.175878 AACTGAGCCGGCATATCATC 57.824 50.000 31.54 16.99 0.00 2.92
3425 5454 1.346062 ACTGAGCCGGCATATCATCT 58.654 50.000 31.54 4.27 0.00 2.90
3426 5455 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
3427 5456 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
3428 5457 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
3429 5458 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
3430 5459 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
3431 5460 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
3432 5461 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
3433 5462 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
3434 5463 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
3435 5464 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
3436 5465 5.934043 CCGGCATATCATCTTGAGATTTACA 59.066 40.000 0.00 0.00 31.21 2.41
3437 5466 6.427853 CCGGCATATCATCTTGAGATTTACAA 59.572 38.462 0.00 0.00 31.21 2.41
3438 5467 7.041167 CCGGCATATCATCTTGAGATTTACAAA 60.041 37.037 0.00 0.00 31.21 2.83
3439 5468 8.013947 CGGCATATCATCTTGAGATTTACAAAG 58.986 37.037 0.00 0.00 31.21 2.77
3440 5469 8.844244 GGCATATCATCTTGAGATTTACAAAGT 58.156 33.333 0.00 0.00 31.21 2.66
3441 5470 9.875675 GCATATCATCTTGAGATTTACAAAGTC 57.124 33.333 0.00 0.00 31.21 3.01
3443 5472 6.408858 TCATCTTGAGATTTACAAAGTCGC 57.591 37.500 0.00 0.00 31.21 5.19
3444 5473 4.903638 TCTTGAGATTTACAAAGTCGCG 57.096 40.909 0.00 0.00 0.00 5.87
3445 5474 3.678072 TCTTGAGATTTACAAAGTCGCGG 59.322 43.478 6.13 0.00 0.00 6.46
3446 5475 3.034721 TGAGATTTACAAAGTCGCGGT 57.965 42.857 6.13 0.00 0.00 5.68
3447 5476 4.177165 TGAGATTTACAAAGTCGCGGTA 57.823 40.909 6.13 0.00 0.00 4.02
3448 5477 4.171005 TGAGATTTACAAAGTCGCGGTAG 58.829 43.478 6.13 0.00 0.00 3.18
3449 5478 3.518590 AGATTTACAAAGTCGCGGTAGG 58.481 45.455 6.13 0.00 0.00 3.18
3450 5479 1.431496 TTTACAAAGTCGCGGTAGGC 58.569 50.000 6.13 0.00 38.69 3.93
3460 5489 4.430765 CGGTAGGCGCCTCGTTGT 62.431 66.667 36.73 11.27 0.00 3.32
3461 5490 2.508663 GGTAGGCGCCTCGTTGTC 60.509 66.667 36.73 16.61 0.00 3.18
3462 5491 2.879462 GTAGGCGCCTCGTTGTCG 60.879 66.667 36.73 0.00 38.55 4.35
3463 5492 3.057548 TAGGCGCCTCGTTGTCGA 61.058 61.111 36.73 10.36 44.12 4.20
3464 5493 3.332493 TAGGCGCCTCGTTGTCGAC 62.332 63.158 36.73 9.11 41.35 4.20
3482 5511 4.144703 GGGAACGTCTCCTCCCGC 62.145 72.222 7.28 0.00 44.68 6.13
3483 5512 3.069318 GGAACGTCTCCTCCCGCT 61.069 66.667 8.87 0.00 41.61 5.52
3484 5513 2.182030 GAACGTCTCCTCCCGCTG 59.818 66.667 0.00 0.00 0.00 5.18
3485 5514 2.282958 AACGTCTCCTCCCGCTGA 60.283 61.111 0.00 0.00 0.00 4.26
3486 5515 1.874345 GAACGTCTCCTCCCGCTGAA 61.874 60.000 0.00 0.00 0.00 3.02
3487 5516 1.469335 AACGTCTCCTCCCGCTGAAA 61.469 55.000 0.00 0.00 0.00 2.69
3488 5517 1.153745 CGTCTCCTCCCGCTGAAAG 60.154 63.158 0.00 0.00 0.00 2.62
3505 5534 2.874315 GCGCGTTGCCGAAAATCC 60.874 61.111 8.43 0.00 37.76 3.01
3506 5535 2.867472 CGCGTTGCCGAAAATCCT 59.133 55.556 0.00 0.00 35.63 3.24
3507 5536 1.511887 CGCGTTGCCGAAAATCCTG 60.512 57.895 0.00 0.00 35.63 3.86
3508 5537 1.873165 GCGTTGCCGAAAATCCTGA 59.127 52.632 0.00 0.00 35.63 3.86
3509 5538 0.239879 GCGTTGCCGAAAATCCTGAA 59.760 50.000 0.00 0.00 35.63 3.02
3510 5539 1.335506 GCGTTGCCGAAAATCCTGAAA 60.336 47.619 0.00 0.00 35.63 2.69
3511 5540 2.671070 GCGTTGCCGAAAATCCTGAAAT 60.671 45.455 0.00 0.00 35.63 2.17
3512 5541 3.426963 GCGTTGCCGAAAATCCTGAAATA 60.427 43.478 0.00 0.00 35.63 1.40
3513 5542 4.728534 CGTTGCCGAAAATCCTGAAATAA 58.271 39.130 0.00 0.00 35.63 1.40
3514 5543 5.157781 CGTTGCCGAAAATCCTGAAATAAA 58.842 37.500 0.00 0.00 35.63 1.40
3515 5544 5.804979 CGTTGCCGAAAATCCTGAAATAAAT 59.195 36.000 0.00 0.00 35.63 1.40
3516 5545 6.310224 CGTTGCCGAAAATCCTGAAATAAATT 59.690 34.615 0.00 0.00 35.63 1.82
3517 5546 7.462724 CGTTGCCGAAAATCCTGAAATAAATTC 60.463 37.037 0.00 0.00 35.82 2.17
3518 5547 6.929625 TGCCGAAAATCCTGAAATAAATTCA 58.070 32.000 0.00 0.00 45.71 2.57
3532 5561 9.515020 TGAAATAAATTCAGGAATAATGCGAAC 57.485 29.630 0.00 0.00 43.08 3.95
3533 5562 9.515020 GAAATAAATTCAGGAATAATGCGAACA 57.485 29.630 0.00 0.00 37.99 3.18
3534 5563 8.856490 AATAAATTCAGGAATAATGCGAACAC 57.144 30.769 0.00 0.00 0.00 3.32
3535 5564 4.900635 ATTCAGGAATAATGCGAACACC 57.099 40.909 0.00 0.00 0.00 4.16
3536 5565 3.342377 TCAGGAATAATGCGAACACCA 57.658 42.857 0.00 0.00 0.00 4.17
3537 5566 3.270027 TCAGGAATAATGCGAACACCAG 58.730 45.455 0.00 0.00 0.00 4.00
3538 5567 2.355756 CAGGAATAATGCGAACACCAGG 59.644 50.000 0.00 0.00 0.00 4.45
3539 5568 2.238646 AGGAATAATGCGAACACCAGGA 59.761 45.455 0.00 0.00 0.00 3.86
3540 5569 2.354821 GGAATAATGCGAACACCAGGAC 59.645 50.000 0.00 0.00 0.00 3.85
3541 5570 3.270877 GAATAATGCGAACACCAGGACT 58.729 45.455 0.00 0.00 0.00 3.85
3542 5571 2.851263 TAATGCGAACACCAGGACTT 57.149 45.000 0.00 0.00 0.00 3.01
3543 5572 1.238439 AATGCGAACACCAGGACTTG 58.762 50.000 0.00 0.00 0.00 3.16
3544 5573 0.396435 ATGCGAACACCAGGACTTGA 59.604 50.000 0.00 0.00 0.00 3.02
3545 5574 0.179234 TGCGAACACCAGGACTTGAA 59.821 50.000 0.00 0.00 0.00 2.69
3546 5575 0.586802 GCGAACACCAGGACTTGAAC 59.413 55.000 0.00 0.00 0.00 3.18
3547 5576 1.226746 CGAACACCAGGACTTGAACC 58.773 55.000 0.00 0.00 0.00 3.62
3548 5577 1.605753 GAACACCAGGACTTGAACCC 58.394 55.000 0.00 0.00 0.00 4.11
3549 5578 1.143073 GAACACCAGGACTTGAACCCT 59.857 52.381 0.00 0.00 0.00 4.34
3553 5582 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
3554 5583 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
3564 5593 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
3565 5594 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
3581 5610 4.538746 GGATACCAATGTACCTCTAGCC 57.461 50.000 0.00 0.00 0.00 3.93
3582 5611 3.901844 GGATACCAATGTACCTCTAGCCA 59.098 47.826 0.00 0.00 0.00 4.75
3583 5612 4.532521 GGATACCAATGTACCTCTAGCCAT 59.467 45.833 0.00 0.00 0.00 4.40
3584 5613 5.337652 GGATACCAATGTACCTCTAGCCATC 60.338 48.000 0.00 0.00 0.00 3.51
3585 5614 2.706190 ACCAATGTACCTCTAGCCATCC 59.294 50.000 0.00 0.00 0.00 3.51
3586 5615 2.705658 CCAATGTACCTCTAGCCATCCA 59.294 50.000 0.00 0.00 0.00 3.41
3587 5616 3.136443 CCAATGTACCTCTAGCCATCCAA 59.864 47.826 0.00 0.00 0.00 3.53
3588 5617 4.385199 CCAATGTACCTCTAGCCATCCAAA 60.385 45.833 0.00 0.00 0.00 3.28
3589 5618 3.906720 TGTACCTCTAGCCATCCAAAC 57.093 47.619 0.00 0.00 0.00 2.93
3590 5619 3.178046 TGTACCTCTAGCCATCCAAACA 58.822 45.455 0.00 0.00 0.00 2.83
3591 5620 2.789409 ACCTCTAGCCATCCAAACAC 57.211 50.000 0.00 0.00 0.00 3.32
3592 5621 1.985159 ACCTCTAGCCATCCAAACACA 59.015 47.619 0.00 0.00 0.00 3.72
3593 5622 2.026822 ACCTCTAGCCATCCAAACACAG 60.027 50.000 0.00 0.00 0.00 3.66
3594 5623 2.237143 CCTCTAGCCATCCAAACACAGA 59.763 50.000 0.00 0.00 0.00 3.41
3595 5624 3.118112 CCTCTAGCCATCCAAACACAGAT 60.118 47.826 0.00 0.00 0.00 2.90
3596 5625 4.125703 CTCTAGCCATCCAAACACAGATC 58.874 47.826 0.00 0.00 0.00 2.75
3597 5626 1.742761 AGCCATCCAAACACAGATCG 58.257 50.000 0.00 0.00 0.00 3.69
3598 5627 0.734889 GCCATCCAAACACAGATCGG 59.265 55.000 0.00 0.00 0.00 4.18
3599 5628 1.950484 GCCATCCAAACACAGATCGGT 60.950 52.381 0.00 0.00 0.00 4.69
3600 5629 2.436417 CCATCCAAACACAGATCGGTT 58.564 47.619 0.00 0.00 0.00 4.44
3601 5630 2.420022 CCATCCAAACACAGATCGGTTC 59.580 50.000 0.00 0.00 0.00 3.62
3602 5631 2.920724 TCCAAACACAGATCGGTTCA 57.079 45.000 0.00 0.00 0.00 3.18
3603 5632 3.201353 TCCAAACACAGATCGGTTCAA 57.799 42.857 0.00 0.00 0.00 2.69
3604 5633 3.546724 TCCAAACACAGATCGGTTCAAA 58.453 40.909 0.00 0.00 0.00 2.69
3605 5634 3.948473 TCCAAACACAGATCGGTTCAAAA 59.052 39.130 0.00 0.00 0.00 2.44
3606 5635 4.036262 TCCAAACACAGATCGGTTCAAAAG 59.964 41.667 0.00 0.00 0.00 2.27
3607 5636 3.626028 AACACAGATCGGTTCAAAAGC 57.374 42.857 0.00 0.00 0.00 3.51
3608 5637 1.880027 ACACAGATCGGTTCAAAAGCC 59.120 47.619 0.00 0.00 0.00 4.35
3609 5638 1.879380 CACAGATCGGTTCAAAAGCCA 59.121 47.619 0.00 0.00 0.00 4.75
3610 5639 2.293122 CACAGATCGGTTCAAAAGCCAA 59.707 45.455 0.00 0.00 0.00 4.52
3611 5640 2.554032 ACAGATCGGTTCAAAAGCCAAG 59.446 45.455 0.00 0.00 0.00 3.61
3612 5641 2.554032 CAGATCGGTTCAAAAGCCAAGT 59.446 45.455 0.00 0.00 0.00 3.16
3613 5642 3.004734 CAGATCGGTTCAAAAGCCAAGTT 59.995 43.478 0.00 0.00 0.00 2.66
3614 5643 2.861462 TCGGTTCAAAAGCCAAGTTG 57.139 45.000 0.00 0.00 0.00 3.16
3615 5644 2.096248 TCGGTTCAAAAGCCAAGTTGT 58.904 42.857 1.45 0.00 0.00 3.32
3616 5645 2.494073 TCGGTTCAAAAGCCAAGTTGTT 59.506 40.909 1.45 0.00 0.00 2.83
3617 5646 2.602660 CGGTTCAAAAGCCAAGTTGTTG 59.397 45.455 1.45 0.00 0.00 3.33
3618 5647 3.674682 CGGTTCAAAAGCCAAGTTGTTGA 60.675 43.478 1.45 2.50 35.46 3.18
3619 5648 4.441792 GGTTCAAAAGCCAAGTTGTTGAT 58.558 39.130 7.28 0.00 35.46 2.57
3620 5649 4.875536 GGTTCAAAAGCCAAGTTGTTGATT 59.124 37.500 7.28 0.00 35.46 2.57
3626 5655 3.656559 AGCCAAGTTGTTGATTGAATGC 58.343 40.909 1.45 0.00 35.46 3.56
3637 5666 6.397272 TGTTGATTGAATGCTAAAATGGACC 58.603 36.000 0.00 0.00 0.00 4.46
3662 5691 4.537135 ATTGGAGACACGTATGACTTGT 57.463 40.909 0.00 0.00 42.67 3.16
3694 5723 2.482664 CCATCCTGATTCCTGTGAGACG 60.483 54.545 0.00 0.00 0.00 4.18
3695 5724 0.532573 TCCTGATTCCTGTGAGACGC 59.467 55.000 0.00 0.00 0.00 5.19
3735 5764 1.413808 GCCATCCTTCCTCTACCTCCT 60.414 57.143 0.00 0.00 0.00 3.69
3741 5770 4.120681 TCCTTCCTCTACCTCCTTCTAGT 58.879 47.826 0.00 0.00 0.00 2.57
3743 5772 4.079672 CCTTCCTCTACCTCCTTCTAGTCA 60.080 50.000 0.00 0.00 0.00 3.41
3795 5825 3.445450 CGATGAACTCTTCCTCCTTCTCA 59.555 47.826 0.00 0.00 0.00 3.27
3814 5844 2.092968 TCATGTACCATCTCCCAACTGC 60.093 50.000 0.00 0.00 0.00 4.40
3898 5929 0.891373 CTCGAACTCTCCTCCAGCAA 59.109 55.000 0.00 0.00 0.00 3.91
3903 5934 1.203441 ACTCTCCTCCAGCAATGGCA 61.203 55.000 0.00 0.00 44.61 4.92
3905 5936 0.627451 TCTCCTCCAGCAATGGCAAT 59.373 50.000 0.00 0.00 44.61 3.56
3921 5952 2.083167 CAATGTTGCCACATCAACCC 57.917 50.000 3.56 0.00 43.34 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.897972 GCCCTACCCTACACCACG 59.102 66.667 0.00 0.00 0.00 4.94
99 283 4.635765 ACATGACTACATACACACCATTGC 59.364 41.667 0.00 0.00 35.09 3.56
100 284 6.108687 AGACATGACTACATACACACCATTG 58.891 40.000 0.00 0.00 35.09 2.82
101 285 6.299805 AGACATGACTACATACACACCATT 57.700 37.500 0.00 0.00 35.09 3.16
146 330 9.079833 CGTATACGGTATTTTATTCGGATCATT 57.920 33.333 17.61 0.00 35.37 2.57
147 331 8.246180 ACGTATACGGTATTTTATTCGGATCAT 58.754 33.333 27.62 0.00 44.95 2.45
149 333 9.000018 GTACGTATACGGTATTTTATTCGGATC 58.000 37.037 27.62 0.00 44.95 3.36
151 335 7.866729 TGTACGTATACGGTATTTTATTCGGA 58.133 34.615 27.62 0.00 44.95 4.55
152 336 8.150300 CTGTACGTATACGGTATTTTATTCGG 57.850 38.462 27.62 5.02 44.95 4.30
176 2003 8.863872 AATGCTCAAAACCTTGTAATAGTACT 57.136 30.769 0.00 0.00 33.94 2.73
189 2016 6.735130 ACAGTGTAGTAAAATGCTCAAAACC 58.265 36.000 0.00 0.00 0.00 3.27
201 2028 7.086376 GGATACAAACGAGACAGTGTAGTAAA 58.914 38.462 0.00 0.00 30.45 2.01
262 2101 4.740235 GTCGGCCTGACTATCTGC 57.260 61.111 17.12 0.00 44.58 4.26
326 2168 3.691609 CGATCAGAGACCGATCATGGATA 59.308 47.826 0.00 0.00 39.43 2.59
333 2175 0.385751 TTGGCGATCAGAGACCGATC 59.614 55.000 0.00 0.00 36.68 3.69
355 2204 2.125991 CCGGCGTACGTTAGGCAA 60.126 61.111 17.90 0.00 41.07 4.52
697 2546 1.885871 GCAGAGAGCCGCCAAAAAT 59.114 52.632 0.00 0.00 37.23 1.82
756 2607 1.651240 GAGCTACGGTGTCCACGCTA 61.651 60.000 0.00 0.00 34.00 4.26
810 2666 4.252073 GACGAGTACTTGAGTAGACCAGA 58.748 47.826 17.37 0.00 0.00 3.86
813 2669 3.608796 AGGACGAGTACTTGAGTAGACC 58.391 50.000 17.37 9.32 0.00 3.85
822 2678 1.288335 AGGGATGGAGGACGAGTACTT 59.712 52.381 0.00 0.00 0.00 2.24
830 2686 2.094100 TGAGATCAGGGATGGAGGAC 57.906 55.000 0.00 0.00 0.00 3.85
840 2696 1.145598 ACGCAGGCATGAGATCAGG 59.854 57.895 9.62 0.00 0.00 3.86
856 2712 1.507520 CTATATATACACGCGCGCACG 59.492 52.381 32.58 23.11 44.07 5.34
859 2715 0.493146 CGCTATATATACACGCGCGC 59.507 55.000 32.58 23.91 37.29 6.86
860 2716 1.110085 CCGCTATATATACACGCGCG 58.890 55.000 30.96 30.96 42.21 6.86
861 2717 0.844503 GCCGCTATATATACACGCGC 59.155 55.000 5.73 0.00 42.21 6.86
862 2718 1.202211 TGGCCGCTATATATACACGCG 60.202 52.381 3.53 3.53 43.08 6.01
898 2754 1.203523 AGCTGGCTAGTTCGAGTTCAG 59.796 52.381 0.00 0.00 0.00 3.02
931 2791 6.145338 AGTTCGAGTTCAAAGTACTCTCAA 57.855 37.500 0.00 0.00 39.86 3.02
1107 2979 3.537874 GCCTGGTACTCGCCGGAT 61.538 66.667 5.05 0.00 37.06 4.18
1113 2985 3.417275 CTCCTGCGCCTGGTACTCG 62.417 68.421 4.18 0.00 0.00 4.18
1308 3180 0.719465 AATAAACAACGAGCGAGCGG 59.281 50.000 0.00 0.00 35.12 5.52
1311 3183 3.673338 TCTCACAATAAACAACGAGCGAG 59.327 43.478 0.00 0.00 0.00 5.03
1374 3252 4.392138 AGAGGCAAAAGCGTTACTAATGTC 59.608 41.667 0.00 0.00 0.00 3.06
1378 3256 5.761165 AAAAGAGGCAAAAGCGTTACTAA 57.239 34.783 0.00 0.00 0.00 2.24
1459 3337 2.147958 GACTAACACATGCACGGGAAA 58.852 47.619 0.00 0.00 0.00 3.13
1460 3338 1.070914 TGACTAACACATGCACGGGAA 59.929 47.619 0.00 0.00 0.00 3.97
1461 3339 0.682292 TGACTAACACATGCACGGGA 59.318 50.000 0.00 0.00 0.00 5.14
1462 3340 1.398041 CATGACTAACACATGCACGGG 59.602 52.381 0.00 0.00 38.58 5.28
1463 3341 2.345876 TCATGACTAACACATGCACGG 58.654 47.619 0.00 0.00 43.03 4.94
1480 3358 3.549794 GCACCAGCTTTAGATTCCTCAT 58.450 45.455 0.00 0.00 37.91 2.90
1585 3493 2.740055 GCTGACGTGGCACTCCTG 60.740 66.667 16.72 11.51 0.00 3.86
1602 3510 6.991938 TGTCTTTTCTTTGTTTATCATGGGG 58.008 36.000 0.00 0.00 0.00 4.96
1603 3511 7.885297 TCTGTCTTTTCTTTGTTTATCATGGG 58.115 34.615 0.00 0.00 0.00 4.00
1662 3570 0.509499 CAATAACGGTCGTTGCGTGT 59.491 50.000 17.57 0.00 38.92 4.49
1690 3598 4.279671 ACTGGGACATAACGAAATGCAAAA 59.720 37.500 0.00 0.00 38.20 2.44
1691 3599 3.823873 ACTGGGACATAACGAAATGCAAA 59.176 39.130 0.00 0.00 38.20 3.68
1709 3697 2.223112 GCACGAACATAGCATTCACTGG 60.223 50.000 0.00 0.00 0.00 4.00
1714 3702 2.874701 AGATGGCACGAACATAGCATTC 59.125 45.455 0.00 0.00 0.00 2.67
1715 3703 2.923121 AGATGGCACGAACATAGCATT 58.077 42.857 0.00 0.00 0.00 3.56
1827 3817 8.264347 AGGAGTATTCTCTCATTTTTCCTTCTC 58.736 37.037 0.00 0.00 40.29 2.87
1843 3845 7.779326 GGAGTACTAGTTTGGTAGGAGTATTCT 59.221 40.741 0.00 0.00 32.75 2.40
1850 3852 4.325658 GGAGGGAGTACTAGTTTGGTAGGA 60.326 50.000 0.00 0.00 0.00 2.94
1851 3853 3.959449 GGAGGGAGTACTAGTTTGGTAGG 59.041 52.174 0.00 0.00 0.00 3.18
1852 3854 3.631227 CGGAGGGAGTACTAGTTTGGTAG 59.369 52.174 0.00 0.00 0.00 3.18
1853 3855 3.010584 ACGGAGGGAGTACTAGTTTGGTA 59.989 47.826 0.00 0.00 0.00 3.25
1854 3856 2.225217 ACGGAGGGAGTACTAGTTTGGT 60.225 50.000 0.00 0.00 0.00 3.67
1855 3857 2.426381 GACGGAGGGAGTACTAGTTTGG 59.574 54.545 0.00 0.00 0.00 3.28
1856 3858 2.426381 GGACGGAGGGAGTACTAGTTTG 59.574 54.545 0.00 0.00 0.00 2.93
1857 3859 2.732763 GGACGGAGGGAGTACTAGTTT 58.267 52.381 0.00 0.00 0.00 2.66
1858 3860 1.407989 CGGACGGAGGGAGTACTAGTT 60.408 57.143 0.00 0.00 0.00 2.24
1859 3861 0.179936 CGGACGGAGGGAGTACTAGT 59.820 60.000 0.00 0.00 0.00 2.57
1860 3862 0.534652 CCGGACGGAGGGAGTACTAG 60.535 65.000 4.40 0.00 37.50 2.57
1861 3863 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
1862 3864 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
1863 3865 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1864 3866 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1865 3867 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1866 3868 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1867 3869 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1868 3870 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1869 3871 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1870 3872 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1871 3873 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1872 3874 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1873 3875 6.411630 TTTAATGACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
1874 3876 8.455682 TCATTTTAATGACAAGTATTTCCGGAC 58.544 33.333 1.83 0.00 40.32 4.79
1875 3877 8.568676 TCATTTTAATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 40.32 5.14
1876 3878 9.801873 ATTCATTTTAATGACAAGTATTTCCGG 57.198 29.630 4.70 0.00 44.54 5.14
1884 3886 8.096414 CCCCTTTCATTCATTTTAATGACAAGT 58.904 33.333 4.70 0.00 44.54 3.16
1885 3887 8.313292 TCCCCTTTCATTCATTTTAATGACAAG 58.687 33.333 4.70 5.64 44.54 3.16
1886 3888 8.200024 TCCCCTTTCATTCATTTTAATGACAA 57.800 30.769 4.70 0.00 44.54 3.18
1887 3889 7.789202 TCCCCTTTCATTCATTTTAATGACA 57.211 32.000 4.70 0.00 44.54 3.58
1888 3890 8.260114 ACATCCCCTTTCATTCATTTTAATGAC 58.740 33.333 4.70 0.00 44.54 3.06
1889 3891 8.378115 ACATCCCCTTTCATTCATTTTAATGA 57.622 30.769 1.12 1.12 42.63 2.57
1892 3894 9.713684 AGATACATCCCCTTTCATTCATTTTAA 57.286 29.630 0.00 0.00 0.00 1.52
1894 3896 9.359653 CTAGATACATCCCCTTTCATTCATTTT 57.640 33.333 0.00 0.00 0.00 1.82
1895 3897 8.727149 TCTAGATACATCCCCTTTCATTCATTT 58.273 33.333 0.00 0.00 0.00 2.32
1896 3898 8.280258 TCTAGATACATCCCCTTTCATTCATT 57.720 34.615 0.00 0.00 0.00 2.57
1897 3899 7.878621 TCTAGATACATCCCCTTTCATTCAT 57.121 36.000 0.00 0.00 0.00 2.57
1898 3900 7.293299 ACATCTAGATACATCCCCTTTCATTCA 59.707 37.037 4.54 0.00 0.00 2.57
1899 3901 7.684529 ACATCTAGATACATCCCCTTTCATTC 58.315 38.462 4.54 0.00 0.00 2.67
1900 3902 7.639062 ACATCTAGATACATCCCCTTTCATT 57.361 36.000 4.54 0.00 0.00 2.57
1901 3903 8.923838 ATACATCTAGATACATCCCCTTTCAT 57.076 34.615 4.54 0.00 0.00 2.57
1902 3904 8.742125 AATACATCTAGATACATCCCCTTTCA 57.258 34.615 4.54 0.00 0.00 2.69
1919 3921 9.678260 GGATGCATCTAGGATTAAAATACATCT 57.322 33.333 25.28 0.00 31.89 2.90
1920 3922 9.678260 AGGATGCATCTAGGATTAAAATACATC 57.322 33.333 25.28 3.00 0.00 3.06
1922 3924 9.866655 AAAGGATGCATCTAGGATTAAAATACA 57.133 29.630 25.28 0.00 0.00 2.29
1926 3928 9.034800 ACAAAAAGGATGCATCTAGGATTAAAA 57.965 29.630 25.28 0.00 0.00 1.52
1927 3929 8.593945 ACAAAAAGGATGCATCTAGGATTAAA 57.406 30.769 25.28 0.00 0.00 1.52
1928 3930 8.593945 AACAAAAAGGATGCATCTAGGATTAA 57.406 30.769 25.28 0.00 0.00 1.40
1929 3931 7.833682 TGAACAAAAAGGATGCATCTAGGATTA 59.166 33.333 25.28 2.23 0.00 1.75
1930 3932 6.664816 TGAACAAAAAGGATGCATCTAGGATT 59.335 34.615 25.28 11.91 0.00 3.01
1931 3933 6.189859 TGAACAAAAAGGATGCATCTAGGAT 58.810 36.000 25.28 7.71 0.00 3.24
1932 3934 5.569355 TGAACAAAAAGGATGCATCTAGGA 58.431 37.500 25.28 0.00 0.00 2.94
1933 3935 5.902613 TGAACAAAAAGGATGCATCTAGG 57.097 39.130 25.28 11.95 0.00 3.02
1934 3936 8.767478 AAAATGAACAAAAAGGATGCATCTAG 57.233 30.769 25.28 11.62 0.00 2.43
1936 3938 9.729281 ATTAAAATGAACAAAAAGGATGCATCT 57.271 25.926 25.28 9.51 0.00 2.90
1937 3939 9.763465 CATTAAAATGAACAAAAAGGATGCATC 57.237 29.630 18.81 18.81 38.70 3.91
1938 3940 8.732531 CCATTAAAATGAACAAAAAGGATGCAT 58.267 29.630 0.00 0.00 38.70 3.96
1939 3941 7.308469 GCCATTAAAATGAACAAAAAGGATGCA 60.308 33.333 4.25 0.00 38.70 3.96
1940 3942 7.022979 GCCATTAAAATGAACAAAAAGGATGC 58.977 34.615 4.25 0.00 38.70 3.91
1941 3943 8.097078 TGCCATTAAAATGAACAAAAAGGATG 57.903 30.769 4.25 0.00 38.70 3.51
1942 3944 8.688747 TTGCCATTAAAATGAACAAAAAGGAT 57.311 26.923 4.25 0.00 38.70 3.24
1943 3945 7.772757 ACTTGCCATTAAAATGAACAAAAAGGA 59.227 29.630 4.25 0.00 38.70 3.36
1944 3946 7.929159 ACTTGCCATTAAAATGAACAAAAAGG 58.071 30.769 4.25 1.00 38.70 3.11
1950 3952 8.920665 CGAAAATACTTGCCATTAAAATGAACA 58.079 29.630 4.25 0.12 38.70 3.18
1951 3953 8.379902 CCGAAAATACTTGCCATTAAAATGAAC 58.620 33.333 4.25 0.00 38.70 3.18
1952 3954 8.307483 TCCGAAAATACTTGCCATTAAAATGAA 58.693 29.630 4.25 0.00 38.70 2.57
1953 3955 7.757624 GTCCGAAAATACTTGCCATTAAAATGA 59.242 33.333 4.25 0.00 38.70 2.57
1954 3956 7.253618 CGTCCGAAAATACTTGCCATTAAAATG 60.254 37.037 0.00 0.00 36.17 2.32
1955 3957 6.750039 CGTCCGAAAATACTTGCCATTAAAAT 59.250 34.615 0.00 0.00 0.00 1.82
1956 3958 6.087522 CGTCCGAAAATACTTGCCATTAAAA 58.912 36.000 0.00 0.00 0.00 1.52
1957 3959 5.392165 CCGTCCGAAAATACTTGCCATTAAA 60.392 40.000 0.00 0.00 0.00 1.52
1958 3960 4.095185 CCGTCCGAAAATACTTGCCATTAA 59.905 41.667 0.00 0.00 0.00 1.40
1959 3961 3.623960 CCGTCCGAAAATACTTGCCATTA 59.376 43.478 0.00 0.00 0.00 1.90
1960 3962 2.422127 CCGTCCGAAAATACTTGCCATT 59.578 45.455 0.00 0.00 0.00 3.16
1961 3963 2.014128 CCGTCCGAAAATACTTGCCAT 58.986 47.619 0.00 0.00 0.00 4.40
1962 3964 1.002201 TCCGTCCGAAAATACTTGCCA 59.998 47.619 0.00 0.00 0.00 4.92
1963 3965 1.664151 CTCCGTCCGAAAATACTTGCC 59.336 52.381 0.00 0.00 0.00 4.52
1964 3966 1.664151 CCTCCGTCCGAAAATACTTGC 59.336 52.381 0.00 0.00 0.00 4.01
1965 3967 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1966 3968 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1967 3969 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1968 3970 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1969 3971 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1970 3972 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1971 3973 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1972 3974 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
1973 3975 2.511659 CATATACTCCCTCCGTCCGAA 58.488 52.381 0.00 0.00 0.00 4.30
1974 3976 1.885359 GCATATACTCCCTCCGTCCGA 60.885 57.143 0.00 0.00 0.00 4.55
1975 3977 0.526662 GCATATACTCCCTCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
1976 3978 1.926108 AGCATATACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
1977 3979 3.069729 ACAAAGCATATACTCCCTCCGTC 59.930 47.826 0.00 0.00 0.00 4.79
1978 3980 3.039011 ACAAAGCATATACTCCCTCCGT 58.961 45.455 0.00 0.00 0.00 4.69
1979 3981 3.753294 ACAAAGCATATACTCCCTCCG 57.247 47.619 0.00 0.00 0.00 4.63
1980 3982 5.036117 TGAACAAAGCATATACTCCCTCC 57.964 43.478 0.00 0.00 0.00 4.30
1981 3983 6.514048 GCATTGAACAAAGCATATACTCCCTC 60.514 42.308 9.36 0.00 35.35 4.30
1982 3984 5.300286 GCATTGAACAAAGCATATACTCCCT 59.700 40.000 9.36 0.00 35.35 4.20
1983 3985 5.067674 TGCATTGAACAAAGCATATACTCCC 59.932 40.000 12.28 0.00 39.67 4.30
1984 3986 5.973565 GTGCATTGAACAAAGCATATACTCC 59.026 40.000 17.73 3.11 45.03 3.85
1985 3987 6.789262 AGTGCATTGAACAAAGCATATACTC 58.211 36.000 17.73 6.68 45.03 2.59
1986 3988 6.457392 CGAGTGCATTGAACAAAGCATATACT 60.457 38.462 17.73 11.37 45.03 2.12
1987 3989 5.678483 CGAGTGCATTGAACAAAGCATATAC 59.322 40.000 17.73 7.55 45.03 1.47
2028 4030 2.491455 GGTATACATCGGGGAGGTGGTA 60.491 54.545 5.01 0.00 34.56 3.25
2040 4043 3.494626 CCGTTCATGTGCTGGTATACATC 59.505 47.826 5.01 0.00 35.46 3.06
2059 4062 1.904865 TGGAGTGCGTTCCTACCGT 60.905 57.895 7.70 0.00 38.12 4.83
2106 4109 3.924918 ATAATGTAGCGAGAGATGCGT 57.075 42.857 0.00 0.00 33.77 5.24
2127 4130 9.320406 CGTACGTACACATATTTTTGTTTTCAT 57.680 29.630 24.50 0.00 0.00 2.57
2128 4131 8.333908 ACGTACGTACACATATTTTTGTTTTCA 58.666 29.630 21.41 0.00 0.00 2.69
2278 4293 4.431131 CTCCCCCATGGCTGCGTT 62.431 66.667 6.09 0.00 0.00 4.84
2711 4735 4.479993 AGGAGCCACTGATGCCGC 62.480 66.667 0.00 0.00 0.00 6.53
2712 4736 2.202987 GAGGAGCCACTGATGCCG 60.203 66.667 0.00 0.00 0.00 5.69
2713 4737 0.463474 GAAGAGGAGCCACTGATGCC 60.463 60.000 0.00 0.00 0.00 4.40
2714 4738 0.809241 CGAAGAGGAGCCACTGATGC 60.809 60.000 0.00 0.00 0.00 3.91
2715 4739 0.179089 CCGAAGAGGAGCCACTGATG 60.179 60.000 0.00 0.00 45.00 3.07
2716 4740 1.333636 CCCGAAGAGGAGCCACTGAT 61.334 60.000 0.00 0.00 45.00 2.90
2717 4741 1.984570 CCCGAAGAGGAGCCACTGA 60.985 63.158 0.00 0.00 45.00 3.41
2718 4742 2.581354 CCCGAAGAGGAGCCACTG 59.419 66.667 0.00 0.00 45.00 3.66
2719 4743 2.685380 CCCCGAAGAGGAGCCACT 60.685 66.667 0.00 0.00 45.00 4.00
2720 4744 3.003763 ACCCCGAAGAGGAGCCAC 61.004 66.667 0.00 0.00 45.00 5.01
2721 4745 2.683933 GACCCCGAAGAGGAGCCA 60.684 66.667 0.00 0.00 45.00 4.75
2722 4746 2.584873 TAGGACCCCGAAGAGGAGCC 62.585 65.000 0.00 0.00 45.00 4.70
2723 4747 1.076192 TAGGACCCCGAAGAGGAGC 60.076 63.158 0.00 0.00 45.00 4.70
2724 4748 0.259356 AGTAGGACCCCGAAGAGGAG 59.741 60.000 0.00 0.00 45.00 3.69
2725 4749 0.258194 GAGTAGGACCCCGAAGAGGA 59.742 60.000 0.00 0.00 45.00 3.71
2726 4750 1.102222 CGAGTAGGACCCCGAAGAGG 61.102 65.000 0.00 0.00 40.63 3.69
2727 4751 0.394080 ACGAGTAGGACCCCGAAGAG 60.394 60.000 0.00 0.00 0.00 2.85
2746 4770 0.898789 GTCACAGAGGACTCCGGGAA 60.899 60.000 0.00 0.00 34.92 3.97
2939 4963 5.578776 AGCAGAAAAGTAAACAAGAAACGG 58.421 37.500 0.00 0.00 0.00 4.44
2960 4984 2.033424 ACGGCAACTCTTTTCTTCAAGC 59.967 45.455 0.00 0.00 0.00 4.01
2964 4988 2.612212 TGTCACGGCAACTCTTTTCTTC 59.388 45.455 0.00 0.00 0.00 2.87
2972 4996 1.961277 CCCAGTGTCACGGCAACTC 60.961 63.158 7.96 0.00 0.00 3.01
2973 4997 2.111043 CCCAGTGTCACGGCAACT 59.889 61.111 7.96 0.00 0.00 3.16
2974 4998 1.961277 CTCCCAGTGTCACGGCAAC 60.961 63.158 7.96 0.00 0.00 4.17
2975 4999 2.099652 CTCTCCCAGTGTCACGGCAA 62.100 60.000 7.96 0.08 0.00 4.52
2977 5001 2.262915 CTCTCCCAGTGTCACGGC 59.737 66.667 7.96 0.00 0.00 5.68
2982 5007 0.744281 GAGCTAGCTCTCCCAGTGTC 59.256 60.000 32.98 7.47 39.80 3.67
2992 5017 1.585002 CGCACGTCTGAGCTAGCTC 60.585 63.158 33.47 33.47 43.01 4.09
3079 5107 1.156736 GAACATTACAGTGCTGCGGT 58.843 50.000 0.00 0.00 0.00 5.68
3082 5110 3.837213 ACATGAACATTACAGTGCTGC 57.163 42.857 0.00 0.00 0.00 5.25
3141 5169 7.595130 CCTTCGTCTTCATTTAAAAGGAAAAGG 59.405 37.037 13.84 13.84 34.97 3.11
3142 5170 8.349983 TCCTTCGTCTTCATTTAAAAGGAAAAG 58.650 33.333 0.00 1.22 38.22 2.27
3148 5176 7.203255 ACCTTCCTTCGTCTTCATTTAAAAG 57.797 36.000 0.00 0.00 0.00 2.27
3160 5188 4.818005 TCTAAAACCAAACCTTCCTTCGTC 59.182 41.667 0.00 0.00 0.00 4.20
3214 5242 5.095145 TGCCAGGATATTATCAGATCAGC 57.905 43.478 6.04 1.13 0.00 4.26
3215 5243 8.143193 GTCTATGCCAGGATATTATCAGATCAG 58.857 40.741 6.04 0.00 0.00 2.90
3281 5310 6.968131 AAACAACTTGCCTTTTTCTTTCTC 57.032 33.333 0.00 0.00 0.00 2.87
3294 5323 5.061684 ACTGCGTTAAAGAAAAACAACTTGC 59.938 36.000 0.00 0.00 0.00 4.01
3304 5333 4.060205 GGGTCTGTACTGCGTTAAAGAAA 58.940 43.478 0.00 0.00 0.00 2.52
3305 5334 3.069872 TGGGTCTGTACTGCGTTAAAGAA 59.930 43.478 0.00 0.00 0.00 2.52
3308 5337 3.472283 TTGGGTCTGTACTGCGTTAAA 57.528 42.857 0.00 0.00 0.00 1.52
3309 5338 3.132925 GTTTGGGTCTGTACTGCGTTAA 58.867 45.455 0.00 0.00 0.00 2.01
3310 5339 2.758009 GTTTGGGTCTGTACTGCGTTA 58.242 47.619 0.00 0.00 0.00 3.18
3311 5340 1.589803 GTTTGGGTCTGTACTGCGTT 58.410 50.000 0.00 0.00 0.00 4.84
3312 5341 0.599204 CGTTTGGGTCTGTACTGCGT 60.599 55.000 0.00 0.00 0.00 5.24
3313 5342 1.897398 GCGTTTGGGTCTGTACTGCG 61.897 60.000 0.00 0.00 0.00 5.18
3314 5343 0.602905 AGCGTTTGGGTCTGTACTGC 60.603 55.000 0.00 0.00 0.00 4.40
3315 5344 1.429463 GAGCGTTTGGGTCTGTACTG 58.571 55.000 0.00 0.00 40.05 2.74
3316 5345 0.038526 CGAGCGTTTGGGTCTGTACT 60.039 55.000 0.00 0.00 41.03 2.73
3317 5346 1.623973 GCGAGCGTTTGGGTCTGTAC 61.624 60.000 0.00 0.00 41.03 2.90
3318 5347 1.373748 GCGAGCGTTTGGGTCTGTA 60.374 57.895 0.00 0.00 41.03 2.74
3319 5348 2.665185 GCGAGCGTTTGGGTCTGT 60.665 61.111 0.00 0.00 41.03 3.41
3320 5349 2.664851 TGCGAGCGTTTGGGTCTG 60.665 61.111 0.00 0.00 41.03 3.51
3321 5350 2.665185 GTGCGAGCGTTTGGGTCT 60.665 61.111 0.00 0.00 41.03 3.85
3322 5351 1.017177 TATGTGCGAGCGTTTGGGTC 61.017 55.000 0.00 0.00 39.80 4.46
3323 5352 1.004320 TATGTGCGAGCGTTTGGGT 60.004 52.632 0.00 0.00 0.00 4.51
3324 5353 1.423845 GTATGTGCGAGCGTTTGGG 59.576 57.895 0.00 0.00 0.00 4.12
3325 5354 1.058748 CGTATGTGCGAGCGTTTGG 59.941 57.895 0.00 0.00 0.00 3.28
3326 5355 1.577616 GCGTATGTGCGAGCGTTTG 60.578 57.895 0.00 0.00 0.00 2.93
3327 5356 2.776072 GCGTATGTGCGAGCGTTT 59.224 55.556 0.00 0.00 0.00 3.60
3336 5365 1.555477 TGAGTGTATGCGCGTATGTG 58.445 50.000 20.45 0.00 0.00 3.21
3337 5366 2.394708 GATGAGTGTATGCGCGTATGT 58.605 47.619 20.45 0.00 0.00 2.29
3338 5367 1.721389 GGATGAGTGTATGCGCGTATG 59.279 52.381 20.45 0.00 0.00 2.39
3339 5368 1.336887 GGGATGAGTGTATGCGCGTAT 60.337 52.381 15.52 15.52 0.00 3.06
3340 5369 0.031585 GGGATGAGTGTATGCGCGTA 59.968 55.000 8.43 4.92 0.00 4.42
3341 5370 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
3342 5371 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
3343 5372 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
3344 5373 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
3345 5374 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
3346 5375 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
3347 5376 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
3348 5377 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
3349 5378 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
3350 5379 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
3351 5380 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
3352 5381 2.602257 TGTGCGTTCATAGGGATGAG 57.398 50.000 0.00 0.00 43.03 2.90
3353 5382 3.006940 GTTTGTGCGTTCATAGGGATGA 58.993 45.455 0.00 0.00 40.45 2.92
3354 5383 2.223021 CGTTTGTGCGTTCATAGGGATG 60.223 50.000 0.00 0.00 0.00 3.51
3355 5384 2.006888 CGTTTGTGCGTTCATAGGGAT 58.993 47.619 0.00 0.00 0.00 3.85
3356 5385 1.434555 CGTTTGTGCGTTCATAGGGA 58.565 50.000 0.00 0.00 0.00 4.20
3357 5386 0.179200 GCGTTTGTGCGTTCATAGGG 60.179 55.000 0.00 0.00 0.00 3.53
3358 5387 0.515127 TGCGTTTGTGCGTTCATAGG 59.485 50.000 0.00 0.00 37.81 2.57
3359 5388 2.525750 ATGCGTTTGTGCGTTCATAG 57.474 45.000 0.00 0.00 37.81 2.23
3360 5389 2.094575 GGTATGCGTTTGTGCGTTCATA 59.905 45.455 0.00 0.00 37.81 2.15
3361 5390 1.135803 GGTATGCGTTTGTGCGTTCAT 60.136 47.619 0.00 0.00 37.81 2.57
3362 5391 0.236187 GGTATGCGTTTGTGCGTTCA 59.764 50.000 0.00 0.00 37.81 3.18
3363 5392 0.453782 GGGTATGCGTTTGTGCGTTC 60.454 55.000 0.00 0.00 37.81 3.95
3364 5393 0.887387 AGGGTATGCGTTTGTGCGTT 60.887 50.000 0.00 0.00 37.81 4.84
3365 5394 0.037139 TAGGGTATGCGTTTGTGCGT 60.037 50.000 0.00 0.00 37.81 5.24
3366 5395 1.260561 GATAGGGTATGCGTTTGTGCG 59.739 52.381 0.00 0.00 37.81 5.34
3367 5396 1.602377 GGATAGGGTATGCGTTTGTGC 59.398 52.381 0.00 0.00 0.00 4.57
3368 5397 3.194005 AGGATAGGGTATGCGTTTGTG 57.806 47.619 0.00 0.00 0.00 3.33
3369 5398 3.243636 CGTAGGATAGGGTATGCGTTTGT 60.244 47.826 0.00 0.00 0.00 2.83
3370 5399 3.005050 TCGTAGGATAGGGTATGCGTTTG 59.995 47.826 0.00 0.00 0.00 2.93
3371 5400 3.225104 TCGTAGGATAGGGTATGCGTTT 58.775 45.455 0.00 0.00 0.00 3.60
3372 5401 2.818432 CTCGTAGGATAGGGTATGCGTT 59.182 50.000 0.00 0.00 0.00 4.84
3373 5402 2.434428 CTCGTAGGATAGGGTATGCGT 58.566 52.381 0.00 0.00 0.00 5.24
3374 5403 1.132643 GCTCGTAGGATAGGGTATGCG 59.867 57.143 0.00 0.00 0.00 4.73
3375 5404 2.094649 GTGCTCGTAGGATAGGGTATGC 60.095 54.545 0.00 0.00 0.00 3.14
3376 5405 2.492484 GGTGCTCGTAGGATAGGGTATG 59.508 54.545 0.00 0.00 0.00 2.39
3377 5406 2.379226 AGGTGCTCGTAGGATAGGGTAT 59.621 50.000 0.00 0.00 0.00 2.73
3378 5407 1.779092 AGGTGCTCGTAGGATAGGGTA 59.221 52.381 0.00 0.00 0.00 3.69
3379 5408 0.556747 AGGTGCTCGTAGGATAGGGT 59.443 55.000 0.00 0.00 0.00 4.34
3380 5409 1.249407 GAGGTGCTCGTAGGATAGGG 58.751 60.000 0.00 0.00 0.00 3.53
3381 5410 1.249407 GGAGGTGCTCGTAGGATAGG 58.751 60.000 0.00 0.00 0.00 2.57
3382 5411 0.875728 CGGAGGTGCTCGTAGGATAG 59.124 60.000 0.00 0.00 0.00 2.08
3383 5412 3.016997 CGGAGGTGCTCGTAGGATA 57.983 57.895 0.00 0.00 0.00 2.59
3384 5413 3.843304 CGGAGGTGCTCGTAGGAT 58.157 61.111 0.00 0.00 0.00 3.24
3397 5426 3.876300 CGGCTCAGTTTTCCGGAG 58.124 61.111 3.34 0.00 39.52 4.63
3400 5429 0.742990 TATGCCGGCTCAGTTTTCCG 60.743 55.000 29.70 0.00 42.58 4.30
3401 5430 1.604278 GATATGCCGGCTCAGTTTTCC 59.396 52.381 29.70 3.23 0.00 3.13
3402 5431 2.288666 TGATATGCCGGCTCAGTTTTC 58.711 47.619 29.70 14.44 0.00 2.29
3403 5432 2.418368 TGATATGCCGGCTCAGTTTT 57.582 45.000 29.70 5.10 0.00 2.43
3404 5433 2.105477 AGATGATATGCCGGCTCAGTTT 59.895 45.455 29.70 8.26 0.00 2.66
3405 5434 1.696336 AGATGATATGCCGGCTCAGTT 59.304 47.619 29.70 9.04 0.00 3.16
3406 5435 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3407 5436 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
3408 5437 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3409 5438 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
3410 5439 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
3411 5440 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
3412 5441 5.934043 TGTAAATCTCAAGATGATATGCCGG 59.066 40.000 0.00 0.00 34.49 6.13
3413 5442 7.425577 TTGTAAATCTCAAGATGATATGCCG 57.574 36.000 0.00 0.00 34.49 5.69
3414 5443 8.844244 ACTTTGTAAATCTCAAGATGATATGCC 58.156 33.333 0.00 0.00 34.49 4.40
3415 5444 9.875675 GACTTTGTAAATCTCAAGATGATATGC 57.124 33.333 0.00 0.00 34.49 3.14
3417 5446 8.768955 GCGACTTTGTAAATCTCAAGATGATAT 58.231 33.333 0.00 0.00 34.49 1.63
3418 5447 7.043391 CGCGACTTTGTAAATCTCAAGATGATA 60.043 37.037 0.00 0.00 34.49 2.15
3419 5448 6.237942 CGCGACTTTGTAAATCTCAAGATGAT 60.238 38.462 0.00 0.00 34.49 2.45
3420 5449 5.062183 CGCGACTTTGTAAATCTCAAGATGA 59.938 40.000 0.00 0.00 34.49 2.92
3421 5450 5.251081 CGCGACTTTGTAAATCTCAAGATG 58.749 41.667 0.00 0.00 34.49 2.90
3422 5451 4.330074 CCGCGACTTTGTAAATCTCAAGAT 59.670 41.667 8.23 0.00 36.07 2.40
3423 5452 3.678072 CCGCGACTTTGTAAATCTCAAGA 59.322 43.478 8.23 0.00 0.00 3.02
3424 5453 3.432252 ACCGCGACTTTGTAAATCTCAAG 59.568 43.478 8.23 0.00 0.00 3.02
3425 5454 3.395639 ACCGCGACTTTGTAAATCTCAA 58.604 40.909 8.23 0.00 0.00 3.02
3426 5455 3.034721 ACCGCGACTTTGTAAATCTCA 57.965 42.857 8.23 0.00 0.00 3.27
3427 5456 3.550678 CCTACCGCGACTTTGTAAATCTC 59.449 47.826 8.23 0.00 0.00 2.75
3428 5457 3.518590 CCTACCGCGACTTTGTAAATCT 58.481 45.455 8.23 0.00 0.00 2.40
3429 5458 2.030091 GCCTACCGCGACTTTGTAAATC 59.970 50.000 8.23 0.00 0.00 2.17
3430 5459 2.004733 GCCTACCGCGACTTTGTAAAT 58.995 47.619 8.23 0.00 0.00 1.40
3431 5460 1.431496 GCCTACCGCGACTTTGTAAA 58.569 50.000 8.23 0.00 0.00 2.01
3432 5461 3.126729 GCCTACCGCGACTTTGTAA 57.873 52.632 8.23 0.00 0.00 2.41
3433 5462 4.895854 GCCTACCGCGACTTTGTA 57.104 55.556 8.23 0.00 0.00 2.41
3443 5472 4.430765 ACAACGAGGCGCCTACCG 62.431 66.667 32.97 31.00 40.75 4.02
3444 5473 2.508663 GACAACGAGGCGCCTACC 60.509 66.667 32.97 17.91 0.00 3.18
3445 5474 2.879462 CGACAACGAGGCGCCTAC 60.879 66.667 32.97 21.51 45.03 3.18
3455 5484 2.353839 ACGTTCCCGTCGACAACG 60.354 61.111 27.79 27.79 46.28 4.10
3467 5496 1.874345 TTCAGCGGGAGGAGACGTTC 61.874 60.000 0.00 0.00 0.00 3.95
3468 5497 1.469335 TTTCAGCGGGAGGAGACGTT 61.469 55.000 0.00 0.00 0.00 3.99
3469 5498 1.878656 CTTTCAGCGGGAGGAGACGT 61.879 60.000 0.00 0.00 0.00 4.34
3470 5499 1.153745 CTTTCAGCGGGAGGAGACG 60.154 63.158 0.00 0.00 0.00 4.18
3471 5500 1.448717 GCTTTCAGCGGGAGGAGAC 60.449 63.158 0.00 0.00 0.00 3.36
3472 5501 2.982130 GCTTTCAGCGGGAGGAGA 59.018 61.111 0.00 0.00 0.00 3.71
3492 5521 7.330700 TGAATTTATTTCAGGATTTTCGGCAAC 59.669 33.333 0.00 0.00 39.44 4.17
3493 5522 7.382110 TGAATTTATTTCAGGATTTTCGGCAA 58.618 30.769 0.00 0.00 39.44 4.52
3494 5523 6.929625 TGAATTTATTTCAGGATTTTCGGCA 58.070 32.000 0.00 0.00 39.44 5.69
3506 5535 9.515020 GTTCGCATTATTCCTGAATTTATTTCA 57.485 29.630 0.00 0.00 42.09 2.69
3507 5536 9.515020 TGTTCGCATTATTCCTGAATTTATTTC 57.485 29.630 0.00 0.00 34.72 2.17
3508 5537 9.301153 GTGTTCGCATTATTCCTGAATTTATTT 57.699 29.630 0.00 0.00 32.50 1.40
3509 5538 7.920682 GGTGTTCGCATTATTCCTGAATTTATT 59.079 33.333 0.00 0.00 32.50 1.40
3510 5539 7.068103 TGGTGTTCGCATTATTCCTGAATTTAT 59.932 33.333 0.00 0.00 32.50 1.40
3511 5540 6.375736 TGGTGTTCGCATTATTCCTGAATTTA 59.624 34.615 0.00 0.00 32.50 1.40
3512 5541 5.184864 TGGTGTTCGCATTATTCCTGAATTT 59.815 36.000 0.00 0.00 32.50 1.82
3513 5542 4.704540 TGGTGTTCGCATTATTCCTGAATT 59.295 37.500 0.00 0.00 32.50 2.17
3514 5543 4.269183 TGGTGTTCGCATTATTCCTGAAT 58.731 39.130 0.00 0.00 34.93 2.57
3515 5544 3.680490 TGGTGTTCGCATTATTCCTGAA 58.320 40.909 0.00 0.00 0.00 3.02
3516 5545 3.270027 CTGGTGTTCGCATTATTCCTGA 58.730 45.455 0.00 0.00 0.00 3.86
3517 5546 2.355756 CCTGGTGTTCGCATTATTCCTG 59.644 50.000 0.00 0.00 0.00 3.86
3518 5547 2.238646 TCCTGGTGTTCGCATTATTCCT 59.761 45.455 0.00 0.00 0.00 3.36
3519 5548 2.354821 GTCCTGGTGTTCGCATTATTCC 59.645 50.000 0.00 0.00 0.00 3.01
3520 5549 3.270877 AGTCCTGGTGTTCGCATTATTC 58.729 45.455 0.00 0.00 0.00 1.75
3521 5550 3.350219 AGTCCTGGTGTTCGCATTATT 57.650 42.857 0.00 0.00 0.00 1.40
3522 5551 3.009723 CAAGTCCTGGTGTTCGCATTAT 58.990 45.455 0.00 0.00 0.00 1.28
3523 5552 2.037902 TCAAGTCCTGGTGTTCGCATTA 59.962 45.455 0.00 0.00 0.00 1.90
3524 5553 1.202758 TCAAGTCCTGGTGTTCGCATT 60.203 47.619 0.00 0.00 0.00 3.56
3525 5554 0.396435 TCAAGTCCTGGTGTTCGCAT 59.604 50.000 0.00 0.00 0.00 4.73
3526 5555 0.179234 TTCAAGTCCTGGTGTTCGCA 59.821 50.000 0.00 0.00 0.00 5.10
3527 5556 0.586802 GTTCAAGTCCTGGTGTTCGC 59.413 55.000 0.00 0.00 0.00 4.70
3528 5557 1.226746 GGTTCAAGTCCTGGTGTTCG 58.773 55.000 0.00 0.00 0.00 3.95
3529 5558 1.143073 AGGGTTCAAGTCCTGGTGTTC 59.857 52.381 0.00 0.00 31.11 3.18
3530 5559 1.133792 CAGGGTTCAAGTCCTGGTGTT 60.134 52.381 0.00 0.00 44.99 3.32
3531 5560 0.474184 CAGGGTTCAAGTCCTGGTGT 59.526 55.000 0.00 0.00 44.99 4.16
3532 5561 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
3536 5565 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
3537 5566 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
3547 5576 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
3548 5577 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
3549 5578 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
3550 5579 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
3557 5586 3.431411 AGAGGTACATTGGTATCCCCA 57.569 47.619 0.00 0.00 43.27 4.96
3558 5587 3.261137 GCTAGAGGTACATTGGTATCCCC 59.739 52.174 0.00 0.00 30.50 4.81
3559 5588 3.261137 GGCTAGAGGTACATTGGTATCCC 59.739 52.174 0.00 0.00 30.50 3.85
3560 5589 3.901844 TGGCTAGAGGTACATTGGTATCC 59.098 47.826 0.00 0.00 30.50 2.59
3561 5590 5.337652 GGATGGCTAGAGGTACATTGGTATC 60.338 48.000 0.00 0.00 0.00 2.24
3562 5591 4.532521 GGATGGCTAGAGGTACATTGGTAT 59.467 45.833 0.00 0.00 0.00 2.73
3563 5592 3.901844 GGATGGCTAGAGGTACATTGGTA 59.098 47.826 0.00 0.00 0.00 3.25
3564 5593 2.706190 GGATGGCTAGAGGTACATTGGT 59.294 50.000 0.00 0.00 0.00 3.67
3565 5594 2.705658 TGGATGGCTAGAGGTACATTGG 59.294 50.000 0.00 0.00 0.00 3.16
3566 5595 4.422073 TTGGATGGCTAGAGGTACATTG 57.578 45.455 0.00 0.00 0.00 2.82
3567 5596 4.227300 TGTTTGGATGGCTAGAGGTACATT 59.773 41.667 0.00 0.00 0.00 2.71
3568 5597 3.780294 TGTTTGGATGGCTAGAGGTACAT 59.220 43.478 0.00 0.00 0.00 2.29
3569 5598 3.055385 GTGTTTGGATGGCTAGAGGTACA 60.055 47.826 0.00 0.00 0.00 2.90
3570 5599 3.055385 TGTGTTTGGATGGCTAGAGGTAC 60.055 47.826 0.00 0.00 0.00 3.34
3571 5600 3.178046 TGTGTTTGGATGGCTAGAGGTA 58.822 45.455 0.00 0.00 0.00 3.08
3572 5601 1.985159 TGTGTTTGGATGGCTAGAGGT 59.015 47.619 0.00 0.00 0.00 3.85
3573 5602 2.237143 TCTGTGTTTGGATGGCTAGAGG 59.763 50.000 0.00 0.00 0.00 3.69
3574 5603 3.616956 TCTGTGTTTGGATGGCTAGAG 57.383 47.619 0.00 0.00 0.00 2.43
3575 5604 3.430790 CGATCTGTGTTTGGATGGCTAGA 60.431 47.826 0.00 0.00 0.00 2.43
3576 5605 2.868583 CGATCTGTGTTTGGATGGCTAG 59.131 50.000 0.00 0.00 0.00 3.42
3577 5606 2.419990 CCGATCTGTGTTTGGATGGCTA 60.420 50.000 0.00 0.00 0.00 3.93
3578 5607 1.679944 CCGATCTGTGTTTGGATGGCT 60.680 52.381 0.00 0.00 0.00 4.75
3579 5608 0.734889 CCGATCTGTGTTTGGATGGC 59.265 55.000 0.00 0.00 0.00 4.40
3580 5609 2.113860 ACCGATCTGTGTTTGGATGG 57.886 50.000 0.00 0.00 0.00 3.51
3581 5610 3.073678 TGAACCGATCTGTGTTTGGATG 58.926 45.455 0.00 0.00 0.00 3.51
3582 5611 3.417069 TGAACCGATCTGTGTTTGGAT 57.583 42.857 0.00 0.00 0.00 3.41
3583 5612 2.920724 TGAACCGATCTGTGTTTGGA 57.079 45.000 0.00 0.00 0.00 3.53
3584 5613 3.980646 TTTGAACCGATCTGTGTTTGG 57.019 42.857 0.00 0.00 0.00 3.28
3585 5614 3.730715 GCTTTTGAACCGATCTGTGTTTG 59.269 43.478 0.00 0.00 0.00 2.93
3586 5615 3.243401 GGCTTTTGAACCGATCTGTGTTT 60.243 43.478 0.00 0.00 0.00 2.83
3587 5616 2.293399 GGCTTTTGAACCGATCTGTGTT 59.707 45.455 0.00 0.00 0.00 3.32
3588 5617 1.880027 GGCTTTTGAACCGATCTGTGT 59.120 47.619 0.00 0.00 0.00 3.72
3589 5618 1.879380 TGGCTTTTGAACCGATCTGTG 59.121 47.619 0.00 0.00 0.00 3.66
3590 5619 2.270352 TGGCTTTTGAACCGATCTGT 57.730 45.000 0.00 0.00 0.00 3.41
3591 5620 2.554032 ACTTGGCTTTTGAACCGATCTG 59.446 45.455 0.00 0.00 0.00 2.90
3592 5621 2.863809 ACTTGGCTTTTGAACCGATCT 58.136 42.857 0.00 0.00 0.00 2.75
3593 5622 3.243401 ACAACTTGGCTTTTGAACCGATC 60.243 43.478 0.00 0.00 0.00 3.69
3594 5623 2.693074 ACAACTTGGCTTTTGAACCGAT 59.307 40.909 0.00 0.00 0.00 4.18
3595 5624 2.096248 ACAACTTGGCTTTTGAACCGA 58.904 42.857 0.00 0.00 0.00 4.69
3596 5625 2.577449 ACAACTTGGCTTTTGAACCG 57.423 45.000 0.00 0.00 0.00 4.44
3597 5626 3.855858 TCAACAACTTGGCTTTTGAACC 58.144 40.909 0.00 0.00 0.00 3.62
3598 5627 5.580297 TCAATCAACAACTTGGCTTTTGAAC 59.420 36.000 0.00 0.00 30.34 3.18
3599 5628 5.728471 TCAATCAACAACTTGGCTTTTGAA 58.272 33.333 0.00 0.00 30.34 2.69
3600 5629 5.336150 TCAATCAACAACTTGGCTTTTGA 57.664 34.783 0.00 0.00 0.00 2.69
3601 5630 6.423862 CATTCAATCAACAACTTGGCTTTTG 58.576 36.000 0.00 0.00 0.00 2.44
3602 5631 5.007921 GCATTCAATCAACAACTTGGCTTTT 59.992 36.000 0.00 0.00 0.00 2.27
3603 5632 4.512571 GCATTCAATCAACAACTTGGCTTT 59.487 37.500 0.00 0.00 0.00 3.51
3604 5633 4.060205 GCATTCAATCAACAACTTGGCTT 58.940 39.130 0.00 0.00 0.00 4.35
3605 5634 3.322828 AGCATTCAATCAACAACTTGGCT 59.677 39.130 0.00 0.00 0.00 4.75
3606 5635 3.656559 AGCATTCAATCAACAACTTGGC 58.343 40.909 0.00 0.00 0.00 4.52
3607 5636 7.712264 TTTTAGCATTCAATCAACAACTTGG 57.288 32.000 0.00 0.00 0.00 3.61
3608 5637 8.225107 CCATTTTAGCATTCAATCAACAACTTG 58.775 33.333 0.00 0.00 0.00 3.16
3609 5638 8.149647 TCCATTTTAGCATTCAATCAACAACTT 58.850 29.630 0.00 0.00 0.00 2.66
3610 5639 7.599998 GTCCATTTTAGCATTCAATCAACAACT 59.400 33.333 0.00 0.00 0.00 3.16
3611 5640 7.148590 GGTCCATTTTAGCATTCAATCAACAAC 60.149 37.037 0.00 0.00 0.00 3.32
3612 5641 6.873076 GGTCCATTTTAGCATTCAATCAACAA 59.127 34.615 0.00 0.00 0.00 2.83
3613 5642 6.014755 TGGTCCATTTTAGCATTCAATCAACA 60.015 34.615 0.00 0.00 0.00 3.33
3614 5643 6.397272 TGGTCCATTTTAGCATTCAATCAAC 58.603 36.000 0.00 0.00 0.00 3.18
3615 5644 6.602410 TGGTCCATTTTAGCATTCAATCAA 57.398 33.333 0.00 0.00 0.00 2.57
3616 5645 6.602410 TTGGTCCATTTTAGCATTCAATCA 57.398 33.333 0.00 0.00 0.00 2.57
3617 5646 7.903995 TTTTGGTCCATTTTAGCATTCAATC 57.096 32.000 0.00 0.00 0.00 2.67
3618 5647 8.732531 CAATTTTGGTCCATTTTAGCATTCAAT 58.267 29.630 0.00 0.00 0.00 2.57
3619 5648 7.174599 CCAATTTTGGTCCATTTTAGCATTCAA 59.825 33.333 0.95 0.00 43.43 2.69
3620 5649 6.654161 CCAATTTTGGTCCATTTTAGCATTCA 59.346 34.615 0.95 0.00 43.43 2.57
3637 5666 5.862924 AGTCATACGTGTCTCCAATTTTG 57.137 39.130 0.00 0.00 0.00 2.44
3673 5702 2.482664 CGTCTCACAGGAATCAGGATGG 60.483 54.545 0.00 0.00 36.16 3.51
3674 5703 2.819115 CGTCTCACAGGAATCAGGATG 58.181 52.381 0.00 0.00 37.54 3.51
3676 5705 0.532573 GCGTCTCACAGGAATCAGGA 59.467 55.000 0.00 0.00 0.00 3.86
3677 5706 0.247460 TGCGTCTCACAGGAATCAGG 59.753 55.000 0.00 0.00 0.00 3.86
3678 5707 2.306341 ATGCGTCTCACAGGAATCAG 57.694 50.000 0.00 0.00 0.00 2.90
3679 5708 2.479560 CGTATGCGTCTCACAGGAATCA 60.480 50.000 0.00 0.00 0.00 2.57
3680 5709 2.120232 CGTATGCGTCTCACAGGAATC 58.880 52.381 0.00 0.00 0.00 2.52
3681 5710 1.749063 TCGTATGCGTCTCACAGGAAT 59.251 47.619 2.37 0.00 39.49 3.01
3682 5711 1.170442 TCGTATGCGTCTCACAGGAA 58.830 50.000 2.37 0.00 39.49 3.36
3694 5723 4.082949 GGCCCTACCATTTATTTCGTATGC 60.083 45.833 0.00 0.00 38.86 3.14
3695 5724 5.067273 TGGCCCTACCATTTATTTCGTATG 58.933 41.667 0.00 0.00 46.36 2.39
3772 5802 3.697045 GAGAAGGAGGAAGAGTTCATCGA 59.303 47.826 0.00 0.00 41.13 3.59
3775 5805 4.782156 ACATGAGAAGGAGGAAGAGTTCAT 59.218 41.667 0.00 0.00 0.00 2.57
3780 5810 4.026744 TGGTACATGAGAAGGAGGAAGAG 58.973 47.826 0.00 0.00 0.00 2.85
3917 5948 3.295800 CCGAAGTAGCTCCGGGTT 58.704 61.111 0.00 0.00 39.59 4.11



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.