Multiple sequence alignment - TraesCS1B01G279800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G279800 chr1B 100.000 3644 0 0 1 3644 488392468 488396111 0.000000e+00 6730.0
1 TraesCS1B01G279800 chr1B 89.202 213 23 0 3432 3644 488463850 488464062 2.160000e-67 267.0
2 TraesCS1B01G279800 chr1A 92.035 2850 117 47 861 3644 463921137 463923942 0.000000e+00 3904.0
3 TraesCS1B01G279800 chr1A 88.701 354 26 11 408 748 463920759 463921111 1.560000e-113 420.0
4 TraesCS1B01G279800 chr1A 83.193 357 44 11 52 393 463920358 463920713 2.730000e-81 313.0
5 TraesCS1B01G279800 chr1A 87.736 212 26 0 3433 3644 463930074 463930285 7.810000e-62 248.0
6 TraesCS1B01G279800 chr1D 93.780 2524 101 34 385 2876 365040071 365042570 0.000000e+00 3740.0
7 TraesCS1B01G279800 chr1D 88.536 724 57 20 2938 3644 365042590 365043304 0.000000e+00 854.0
8 TraesCS1B01G279800 chr1D 87.324 213 27 0 3432 3644 365063791 365064003 1.010000e-60 244.0
9 TraesCS1B01G279800 chr1D 92.647 68 1 4 1 67 201887217 201887281 1.080000e-15 95.3
10 TraesCS1B01G279800 chr3A 86.720 1378 167 15 1228 2597 632777601 632776232 0.000000e+00 1517.0
11 TraesCS1B01G279800 chr3A 92.647 68 1 3 1 67 323045582 323045518 1.080000e-15 95.3
12 TraesCS1B01G279800 chr3B 86.439 1379 169 17 1228 2597 652497352 652495983 0.000000e+00 1495.0
13 TraesCS1B01G279800 chr3D 85.622 1398 183 17 1209 2597 490305334 490303946 0.000000e+00 1452.0
14 TraesCS1B01G279800 chr3D 81.250 144 22 3 412 550 370208424 370208567 1.070000e-20 111.0
15 TraesCS1B01G279800 chr3D 89.474 76 4 4 1 75 585107914 585107842 3.870000e-15 93.5
16 TraesCS1B01G279800 chr5D 96.721 61 0 2 1 60 300099949 300100008 2.320000e-17 100.0
17 TraesCS1B01G279800 chr6D 92.754 69 2 3 1 67 32102787 32102720 3.000000e-16 97.1
18 TraesCS1B01G279800 chr6B 89.873 79 3 5 1 77 187742648 187742723 3.000000e-16 97.1
19 TraesCS1B01G279800 chr6B 88.608 79 4 5 1 77 186068065 186067990 1.390000e-14 91.6
20 TraesCS1B01G279800 chr7D 90.411 73 5 2 1 72 12190586 12190515 1.080000e-15 95.3
21 TraesCS1B01G279800 chr7D 89.474 76 4 4 1 75 13594309 13594381 3.870000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G279800 chr1B 488392468 488396111 3643 False 6730.000000 6730 100.000000 1 3644 1 chr1B.!!$F1 3643
1 TraesCS1B01G279800 chr1A 463920358 463923942 3584 False 1545.666667 3904 87.976333 52 3644 3 chr1A.!!$F2 3592
2 TraesCS1B01G279800 chr1D 365040071 365043304 3233 False 2297.000000 3740 91.158000 385 3644 2 chr1D.!!$F3 3259
3 TraesCS1B01G279800 chr3A 632776232 632777601 1369 True 1517.000000 1517 86.720000 1228 2597 1 chr3A.!!$R2 1369
4 TraesCS1B01G279800 chr3B 652495983 652497352 1369 True 1495.000000 1495 86.439000 1228 2597 1 chr3B.!!$R1 1369
5 TraesCS1B01G279800 chr3D 490303946 490305334 1388 True 1452.000000 1452 85.622000 1209 2597 1 chr3D.!!$R1 1388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 184 0.099436 GTCTCGATGGGTTGCATTGC 59.901 55.0 0.46 0.46 0.0 3.56 F
807 869 0.106918 TTGCCTGAAACAACGGAGGT 60.107 50.0 0.00 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1125 1.280710 GGATGTGGTGTGGTGGTGATA 59.719 52.381 0.0 0.0 0.0 2.15 R
2721 2809 1.144936 CTCCGGCTCCCTGATTGAC 59.855 63.158 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
49 50 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
50 51 5.310409 CCTCTAGGGCATATTTCCTTCAA 57.690 43.478 0.00 0.00 34.75 2.69
57 58 4.455877 GGGCATATTTCCTTCAATCCTACG 59.544 45.833 0.00 0.00 0.00 3.51
63 64 2.022195 TCCTTCAATCCTACGTCCTCG 58.978 52.381 0.00 0.00 43.34 4.63
76 77 4.778415 CCTCGTCGTGTGGCCGAG 62.778 72.222 0.00 0.00 45.71 4.63
107 108 4.397420 TGCTTATGTGGAGTTGATTGTGT 58.603 39.130 0.00 0.00 0.00 3.72
118 119 5.932303 GGAGTTGATTGTGTAGAACTGCTTA 59.068 40.000 0.00 0.00 34.83 3.09
127 129 5.354792 TGTGTAGAACTGCTTAAAAACCGTT 59.645 36.000 0.00 0.00 0.00 4.44
128 130 5.679792 GTGTAGAACTGCTTAAAAACCGTTG 59.320 40.000 0.00 0.00 0.00 4.10
131 133 5.578776 AGAACTGCTTAAAAACCGTTGAAG 58.421 37.500 0.00 0.00 0.00 3.02
134 136 4.577283 ACTGCTTAAAAACCGTTGAAGCTA 59.423 37.500 19.01 10.05 42.38 3.32
138 140 7.302524 TGCTTAAAAACCGTTGAAGCTAATAG 58.697 34.615 19.01 0.00 42.38 1.73
143 145 4.682778 ACCGTTGAAGCTAATAGGCATA 57.317 40.909 0.00 0.00 34.17 3.14
154 156 5.015603 AGCTAATAGGCATATCCACCCAAAT 59.984 40.000 0.00 0.00 37.29 2.32
158 160 3.335748 AGGCATATCCACCCAAATCCTA 58.664 45.455 0.00 0.00 37.29 2.94
159 161 3.074538 AGGCATATCCACCCAAATCCTAC 59.925 47.826 0.00 0.00 37.29 3.18
176 178 0.528924 TACGGTGTCTCGATGGGTTG 59.471 55.000 0.00 0.00 0.00 3.77
178 180 1.003839 GGTGTCTCGATGGGTTGCA 60.004 57.895 0.00 0.00 0.00 4.08
182 184 0.099436 GTCTCGATGGGTTGCATTGC 59.901 55.000 0.46 0.46 0.00 3.56
190 192 0.609662 GGGTTGCATTGCCAACAGAT 59.390 50.000 18.83 0.00 45.25 2.90
192 194 2.431782 GGGTTGCATTGCCAACAGATAT 59.568 45.455 18.83 0.00 45.25 1.63
193 195 3.450578 GGTTGCATTGCCAACAGATATG 58.549 45.455 18.83 0.00 45.25 1.78
195 197 4.107622 GTTGCATTGCCAACAGATATGAC 58.892 43.478 6.12 0.00 43.45 3.06
212 214 7.789302 CAGATATGACGTTCGTAAATGTTGATG 59.211 37.037 0.00 0.00 34.73 3.07
219 221 5.631026 GTTCGTAAATGTTGATGATGCACT 58.369 37.500 0.00 0.00 0.00 4.40
220 222 5.220557 TCGTAAATGTTGATGATGCACTG 57.779 39.130 0.00 0.00 0.00 3.66
235 237 1.725931 GCACTGTTTCAGAATTCGCGG 60.726 52.381 6.13 0.00 35.18 6.46
236 238 1.531149 CACTGTTTCAGAATTCGCGGT 59.469 47.619 6.13 0.00 35.18 5.68
237 239 2.734606 CACTGTTTCAGAATTCGCGGTA 59.265 45.455 6.13 0.00 35.18 4.02
242 244 3.793797 TTCAGAATTCGCGGTAGATGA 57.206 42.857 6.13 3.00 0.00 2.92
244 246 2.034685 TCAGAATTCGCGGTAGATGAGG 59.965 50.000 6.13 0.00 0.00 3.86
250 252 2.064581 GCGGTAGATGAGGGTGGGT 61.065 63.158 0.00 0.00 0.00 4.51
259 261 1.299976 GAGGGTGGGTGTGGTGATC 59.700 63.158 0.00 0.00 0.00 2.92
262 264 1.002134 GGTGGGTGTGGTGATCTGG 60.002 63.158 0.00 0.00 0.00 3.86
272 274 1.156736 GGTGATCTGGAACCACAACG 58.843 55.000 0.00 0.00 36.41 4.10
289 291 1.442520 CGGATTGTGCTTGTTGGCG 60.443 57.895 0.00 0.00 34.52 5.69
292 294 1.277495 GATTGTGCTTGTTGGCGTGC 61.277 55.000 0.00 0.00 34.52 5.34
295 297 2.911509 TGCTTGTTGGCGTGCCAT 60.912 55.556 15.40 0.00 46.64 4.40
315 317 1.291132 GAGCGCATTCAGGAGGTTAC 58.709 55.000 11.47 0.00 0.00 2.50
321 323 2.301346 CATTCAGGAGGTTACCATGCC 58.699 52.381 3.51 1.80 0.00 4.40
339 341 0.459237 CCAGAACTAGCTGAGGCACG 60.459 60.000 0.00 0.00 41.70 5.34
340 342 0.244994 CAGAACTAGCTGAGGCACGT 59.755 55.000 0.00 0.00 41.70 4.49
341 343 0.528470 AGAACTAGCTGAGGCACGTC 59.472 55.000 0.00 0.00 41.70 4.34
342 344 0.798771 GAACTAGCTGAGGCACGTCG 60.799 60.000 0.00 0.00 41.70 5.12
343 345 2.580867 CTAGCTGAGGCACGTCGC 60.581 66.667 0.00 0.00 41.70 5.19
344 346 3.057547 CTAGCTGAGGCACGTCGCT 62.058 63.158 0.00 11.97 41.91 4.93
345 347 3.342370 TAGCTGAGGCACGTCGCTG 62.342 63.158 15.04 0.00 41.91 5.18
347 349 4.731612 CTGAGGCACGTCGCTGCT 62.732 66.667 15.86 5.92 41.91 4.24
348 350 4.724602 TGAGGCACGTCGCTGCTC 62.725 66.667 15.86 12.45 41.91 4.26
349 351 4.427661 GAGGCACGTCGCTGCTCT 62.428 66.667 15.86 12.20 41.91 4.09
350 352 3.923563 GAGGCACGTCGCTGCTCTT 62.924 63.158 15.86 6.01 41.91 2.85
351 353 3.782244 GGCACGTCGCTGCTCTTG 61.782 66.667 15.86 0.00 41.91 3.02
358 374 2.431430 CGCTGCTCTTGCTCGTCA 60.431 61.111 0.00 0.00 40.48 4.35
370 386 1.864711 TGCTCGTCAAGAAGGTTTTCG 59.135 47.619 0.00 0.00 38.38 3.46
382 398 5.480205 AGAAGGTTTTCGTAAGGTCATCTC 58.520 41.667 0.00 0.00 38.38 2.75
399 415 1.140052 TCTCCTTCACTTCAAACGGCA 59.860 47.619 0.00 0.00 0.00 5.69
418 465 3.128938 GGCAGACTGTTCGTAGTAGTCAT 59.871 47.826 3.99 0.00 42.44 3.06
457 505 2.544903 CGGGCAATTTTCCGTCTTGTTT 60.545 45.455 7.79 0.00 41.23 2.83
473 522 7.170998 CCGTCTTGTTTCTTTAGTCATGTTAGT 59.829 37.037 0.00 0.00 0.00 2.24
475 524 8.215132 GTCTTGTTTCTTTAGTCATGTTAGTCG 58.785 37.037 0.00 0.00 0.00 4.18
520 570 9.288124 TCATATATGCATTTGTGTTTTTCTTCG 57.712 29.630 3.54 0.00 0.00 3.79
522 572 4.377839 TGCATTTGTGTTTTTCTTCGGA 57.622 36.364 0.00 0.00 0.00 4.55
528 578 7.307337 GCATTTGTGTTTTTCTTCGGATGATTT 60.307 33.333 0.00 0.00 0.00 2.17
538 588 6.189677 TCTTCGGATGATTTTATTTTGCGT 57.810 33.333 0.00 0.00 0.00 5.24
541 591 7.694784 TCTTCGGATGATTTTATTTTGCGTAAC 59.305 33.333 0.00 0.00 0.00 2.50
552 602 0.595588 TTGCGTAACGTAACTCCGGA 59.404 50.000 2.93 2.93 0.00 5.14
616 677 9.886132 TGAATAAAGAGTGGTATTCTCTAAACC 57.114 33.333 0.00 0.00 40.79 3.27
622 683 8.622948 AGAGTGGTATTCTCTAAACCAAAAAG 57.377 34.615 0.00 0.00 44.56 2.27
623 684 7.175119 AGAGTGGTATTCTCTAAACCAAAAAGC 59.825 37.037 0.00 0.00 44.56 3.51
624 685 6.775629 AGTGGTATTCTCTAAACCAAAAAGCA 59.224 34.615 0.00 0.00 44.56 3.91
625 686 7.286775 AGTGGTATTCTCTAAACCAAAAAGCAA 59.713 33.333 0.00 0.00 44.56 3.91
679 741 0.661020 GAAAATGGACCATACGGCGG 59.339 55.000 13.24 0.00 34.57 6.13
689 751 2.949909 ATACGGCGGCACTTGACCA 61.950 57.895 13.24 0.00 0.00 4.02
748 810 1.268133 GCTCGATAGTCGACACCTCAC 60.268 57.143 19.50 2.05 44.82 3.51
788 850 0.912486 GCCCCACCACTCAGTATCTT 59.088 55.000 0.00 0.00 0.00 2.40
798 860 4.154918 CCACTCAGTATCTTTGCCTGAAAC 59.845 45.833 0.00 0.00 34.99 2.78
799 861 4.756642 CACTCAGTATCTTTGCCTGAAACA 59.243 41.667 0.00 0.00 34.99 2.83
807 869 0.106918 TTGCCTGAAACAACGGAGGT 60.107 50.000 0.00 0.00 0.00 3.85
808 870 0.759959 TGCCTGAAACAACGGAGGTA 59.240 50.000 0.00 0.00 0.00 3.08
809 871 1.270625 TGCCTGAAACAACGGAGGTAG 60.271 52.381 0.00 0.00 0.00 3.18
810 872 1.944430 GCCTGAAACAACGGAGGTAGG 60.944 57.143 0.00 0.00 0.00 3.18
811 873 1.621814 CCTGAAACAACGGAGGTAGGA 59.378 52.381 0.00 0.00 0.00 2.94
832 894 2.691409 ACCATCACCGTATCAGGTTG 57.309 50.000 0.00 0.00 43.00 3.77
833 895 1.906574 ACCATCACCGTATCAGGTTGT 59.093 47.619 0.00 0.00 43.00 3.32
834 896 3.101437 ACCATCACCGTATCAGGTTGTA 58.899 45.455 0.00 0.00 43.00 2.41
835 897 3.118884 ACCATCACCGTATCAGGTTGTAC 60.119 47.826 0.00 0.00 43.00 2.90
836 898 3.118920 CCATCACCGTATCAGGTTGTACA 60.119 47.826 0.00 0.00 43.00 2.90
838 900 3.916761 TCACCGTATCAGGTTGTACAAC 58.083 45.455 27.20 27.20 43.00 3.32
839 901 2.664568 CACCGTATCAGGTTGTACAACG 59.335 50.000 27.72 17.52 43.00 4.10
840 902 2.297033 ACCGTATCAGGTTGTACAACGT 59.703 45.455 27.72 26.07 43.00 3.99
841 903 3.505680 ACCGTATCAGGTTGTACAACGTA 59.494 43.478 28.04 17.93 43.00 3.57
842 904 3.853671 CCGTATCAGGTTGTACAACGTAC 59.146 47.826 28.04 23.59 42.02 3.67
877 939 1.199327 CGATACATCGCATCCTACGGT 59.801 52.381 0.00 0.00 43.84 4.83
881 943 0.318441 CATCGCATCCTACGGTGGAT 59.682 55.000 5.74 5.74 46.91 3.41
988 1058 3.023116 CAGCAATCCCCTCCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
1068 1142 1.623311 CTCTATCACCACCACACCACA 59.377 52.381 0.00 0.00 0.00 4.17
1867 1944 2.678580 TGGACCTCATCGACGCCA 60.679 61.111 0.00 0.00 0.00 5.69
2646 2723 2.408241 CGACGAGGAGGAGTGACCC 61.408 68.421 0.00 0.00 40.05 4.46
2678 2766 2.516460 GCCCAGCTCCTCTGCATG 60.516 66.667 0.00 0.00 41.50 4.06
2679 2767 2.516460 CCCAGCTCCTCTGCATGC 60.516 66.667 11.82 11.82 41.50 4.06
2680 2768 2.271173 CCAGCTCCTCTGCATGCA 59.729 61.111 21.29 21.29 41.50 3.96
2681 2769 1.152943 CCAGCTCCTCTGCATGCAT 60.153 57.895 22.97 0.35 41.50 3.96
2682 2770 1.167155 CCAGCTCCTCTGCATGCATC 61.167 60.000 22.97 6.48 41.50 3.91
2683 2771 0.463833 CAGCTCCTCTGCATGCATCA 60.464 55.000 22.97 10.14 35.78 3.07
2684 2772 0.179043 AGCTCCTCTGCATGCATCAG 60.179 55.000 22.97 19.08 34.99 2.90
2685 2773 1.787057 GCTCCTCTGCATGCATCAGC 61.787 60.000 22.97 20.32 42.57 4.26
2686 2774 0.179043 CTCCTCTGCATGCATCAGCT 60.179 55.000 22.97 0.00 42.74 4.24
2687 2775 0.463833 TCCTCTGCATGCATCAGCTG 60.464 55.000 22.97 7.63 42.74 4.24
2688 2776 0.748367 CCTCTGCATGCATCAGCTGT 60.748 55.000 22.97 0.00 42.74 4.40
2689 2777 1.474498 CCTCTGCATGCATCAGCTGTA 60.474 52.381 22.97 0.48 42.74 2.74
2690 2778 1.867865 CTCTGCATGCATCAGCTGTAG 59.132 52.381 22.97 6.12 42.74 2.74
2691 2779 0.308068 CTGCATGCATCAGCTGTAGC 59.692 55.000 22.97 20.92 42.74 3.58
2721 2809 4.897224 TGCTTGCGAATTTTCTTAGATCG 58.103 39.130 0.00 0.00 36.64 3.69
2767 2855 4.038522 TCGGTTCCATTGCTTGAATGAAAA 59.961 37.500 0.00 0.00 43.87 2.29
2834 2948 1.696063 AGTTGCTGCAATGGTTGACT 58.304 45.000 19.11 6.71 0.00 3.41
2839 2953 1.666888 GCTGCAATGGTTGACTTTCGG 60.667 52.381 0.00 0.00 0.00 4.30
2885 3001 6.852420 AGCATAACTTTGTACTAGGTCTCA 57.148 37.500 0.00 0.00 0.00 3.27
2886 3002 7.425224 AGCATAACTTTGTACTAGGTCTCAT 57.575 36.000 0.00 0.00 0.00 2.90
2887 3003 7.268586 AGCATAACTTTGTACTAGGTCTCATG 58.731 38.462 0.00 0.39 0.00 3.07
2888 3004 6.480320 GCATAACTTTGTACTAGGTCTCATGG 59.520 42.308 0.00 0.00 0.00 3.66
2916 3032 1.787012 GCCAAAGTTTGCCATCACTG 58.213 50.000 10.25 0.00 0.00 3.66
2917 3033 1.069049 GCCAAAGTTTGCCATCACTGT 59.931 47.619 10.25 0.00 0.00 3.55
2918 3034 2.295909 GCCAAAGTTTGCCATCACTGTA 59.704 45.455 10.25 0.00 0.00 2.74
2919 3035 3.243704 GCCAAAGTTTGCCATCACTGTAA 60.244 43.478 10.25 0.00 0.00 2.41
2920 3036 4.298332 CCAAAGTTTGCCATCACTGTAAC 58.702 43.478 10.25 0.00 0.00 2.50
2921 3037 4.202101 CCAAAGTTTGCCATCACTGTAACA 60.202 41.667 10.25 0.00 0.00 2.41
2922 3038 5.509501 CCAAAGTTTGCCATCACTGTAACAT 60.510 40.000 10.25 0.00 0.00 2.71
2923 3039 4.771590 AGTTTGCCATCACTGTAACATG 57.228 40.909 0.00 0.00 0.00 3.21
2924 3040 3.057315 AGTTTGCCATCACTGTAACATGC 60.057 43.478 0.00 0.00 0.00 4.06
2925 3041 1.462616 TGCCATCACTGTAACATGCC 58.537 50.000 0.00 0.00 0.00 4.40
2926 3042 1.271817 TGCCATCACTGTAACATGCCA 60.272 47.619 0.00 0.00 0.00 4.92
2927 3043 1.402968 GCCATCACTGTAACATGCCAG 59.597 52.381 0.00 0.00 34.82 4.85
2928 3044 2.715046 CCATCACTGTAACATGCCAGT 58.285 47.619 7.29 7.29 42.47 4.00
2929 3045 3.872696 CCATCACTGTAACATGCCAGTA 58.127 45.455 11.57 3.87 39.83 2.74
2930 3046 3.623060 CCATCACTGTAACATGCCAGTAC 59.377 47.826 11.57 2.27 39.83 2.73
2931 3047 4.252878 CATCACTGTAACATGCCAGTACA 58.747 43.478 11.57 6.11 39.83 2.90
2932 3048 3.925379 TCACTGTAACATGCCAGTACAG 58.075 45.455 17.98 17.98 39.83 2.74
2934 3050 4.065088 CACTGTAACATGCCAGTACAGTT 58.935 43.478 20.73 10.18 46.15 3.16
2935 3051 4.065088 ACTGTAACATGCCAGTACAGTTG 58.935 43.478 18.89 5.20 46.15 3.16
2936 3052 4.202315 ACTGTAACATGCCAGTACAGTTGA 60.202 41.667 18.89 0.00 46.15 3.18
2937 3053 4.709250 TGTAACATGCCAGTACAGTTGAA 58.291 39.130 0.00 0.00 0.00 2.69
2938 3054 5.312895 TGTAACATGCCAGTACAGTTGAAT 58.687 37.500 0.00 0.00 0.00 2.57
3038 3158 5.626258 CTTTTCTGAAAAAGGTCGCAAAG 57.374 39.130 15.67 0.00 45.03 2.77
3041 3161 1.338020 CTGAAAAAGGTCGCAAAGGCT 59.662 47.619 0.00 0.00 38.10 4.58
3049 3169 2.000447 GGTCGCAAAGGCTACAACTAG 59.000 52.381 0.00 0.00 37.44 2.57
3161 3309 8.303876 GTGCTAAAACCCAAGAATCAAGAATTA 58.696 33.333 0.00 0.00 0.00 1.40
3166 3314 7.468141 AACCCAAGAATCAAGAATTAAGGAC 57.532 36.000 0.00 0.00 0.00 3.85
3193 3341 7.226325 GGATGAATCTATCTTGTTCAGTCAAGG 59.774 40.741 6.60 0.00 43.25 3.61
3223 3371 3.000041 TGCTTCGGTACTTGCAGTTATG 59.000 45.455 0.00 0.00 0.00 1.90
3224 3372 3.259064 GCTTCGGTACTTGCAGTTATGA 58.741 45.455 0.00 0.00 0.00 2.15
3245 3393 2.046023 TGCGCCCATGTTCTCAGG 60.046 61.111 4.18 0.00 0.00 3.86
3290 3446 1.275657 GCCGTGTTCAAGTGTGTCG 59.724 57.895 0.00 0.00 0.00 4.35
3298 3454 0.176910 TCAAGTGTGTCGGTGCTTCA 59.823 50.000 0.00 0.00 0.00 3.02
3300 3456 0.532862 AAGTGTGTCGGTGCTTCAGG 60.533 55.000 0.00 0.00 0.00 3.86
3302 3458 0.320771 GTGTGTCGGTGCTTCAGGAT 60.321 55.000 0.00 0.00 0.00 3.24
3310 3468 5.116882 GTCGGTGCTTCAGGATTAATAAGT 58.883 41.667 0.00 0.00 0.00 2.24
3314 3472 6.456988 CGGTGCTTCAGGATTAATAAGTTCAC 60.457 42.308 0.00 0.00 0.00 3.18
3359 3517 2.531522 AAACTGAAACATTGCTGCCC 57.468 45.000 0.00 0.00 0.00 5.36
3360 3518 1.412079 AACTGAAACATTGCTGCCCA 58.588 45.000 0.00 0.00 0.00 5.36
3378 3536 2.943690 CCCAGAAGAATCAGCACATGAG 59.056 50.000 0.00 0.00 42.53 2.90
3390 3548 4.005650 CAGCACATGAGTAGTGGAATTGT 58.994 43.478 0.00 0.00 37.46 2.71
3404 3562 5.182001 AGTGGAATTGTCAGCATACAACTTC 59.818 40.000 6.08 10.17 41.89 3.01
3407 3565 2.455674 TGTCAGCATACAACTTCGCT 57.544 45.000 0.00 0.00 34.29 4.93
3419 3597 7.465379 GCATACAACTTCGCTGTACATAATTCA 60.465 37.037 0.00 0.00 32.27 2.57
3427 3605 4.686091 CGCTGTACATAATTCATCGACCAT 59.314 41.667 0.00 0.00 0.00 3.55
3540 3718 5.681337 CGATGAGCAGATAGAAGTAGTCA 57.319 43.478 0.00 0.00 0.00 3.41
3543 3721 5.843673 TGAGCAGATAGAAGTAGTCAAGG 57.156 43.478 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
11 12 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
12 13 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
28 29 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
29 30 5.942826 GGATTGAAGGAAATATGCCCTAGAG 59.057 44.000 0.00 0.00 31.36 2.43
30 31 5.612688 AGGATTGAAGGAAATATGCCCTAGA 59.387 40.000 0.00 0.00 31.36 2.43
31 32 5.885465 AGGATTGAAGGAAATATGCCCTAG 58.115 41.667 0.00 0.00 31.36 3.02
32 33 5.930209 AGGATTGAAGGAAATATGCCCTA 57.070 39.130 0.00 0.00 31.36 3.53
33 34 4.821532 AGGATTGAAGGAAATATGCCCT 57.178 40.909 0.00 0.00 0.00 5.19
34 35 4.455877 CGTAGGATTGAAGGAAATATGCCC 59.544 45.833 0.00 0.00 0.00 5.36
35 36 5.063880 ACGTAGGATTGAAGGAAATATGCC 58.936 41.667 0.00 0.00 0.00 4.40
36 37 5.179555 GGACGTAGGATTGAAGGAAATATGC 59.820 44.000 0.00 0.00 0.00 3.14
37 38 6.525629 AGGACGTAGGATTGAAGGAAATATG 58.474 40.000 0.00 0.00 0.00 1.78
38 39 6.516860 CGAGGACGTAGGATTGAAGGAAATAT 60.517 42.308 0.00 0.00 34.56 1.28
39 40 5.221185 CGAGGACGTAGGATTGAAGGAAATA 60.221 44.000 0.00 0.00 34.56 1.40
40 41 4.441634 CGAGGACGTAGGATTGAAGGAAAT 60.442 45.833 0.00 0.00 34.56 2.17
41 42 3.119245 CGAGGACGTAGGATTGAAGGAAA 60.119 47.826 0.00 0.00 34.56 3.13
42 43 2.426024 CGAGGACGTAGGATTGAAGGAA 59.574 50.000 0.00 0.00 34.56 3.36
43 44 2.022195 CGAGGACGTAGGATTGAAGGA 58.978 52.381 0.00 0.00 34.56 3.36
44 45 2.493713 CGAGGACGTAGGATTGAAGG 57.506 55.000 0.00 0.00 34.56 3.46
63 64 0.878961 ACTTTTCTCGGCCACACGAC 60.879 55.000 2.24 0.00 38.06 4.34
76 77 7.816640 TCAACTCCACATAAGCAATACTTTTC 58.183 34.615 0.00 0.00 39.97 2.29
107 108 6.680874 TTCAACGGTTTTTAAGCAGTTCTA 57.319 33.333 0.00 0.00 0.00 2.10
118 119 4.521256 TGCCTATTAGCTTCAACGGTTTTT 59.479 37.500 0.00 0.00 0.00 1.94
127 129 4.019321 GGGTGGATATGCCTATTAGCTTCA 60.019 45.833 0.00 0.00 37.63 3.02
128 130 4.019321 TGGGTGGATATGCCTATTAGCTTC 60.019 45.833 0.00 0.00 37.63 3.86
131 133 4.301072 TTGGGTGGATATGCCTATTAGC 57.699 45.455 0.00 0.00 37.63 3.09
134 136 4.358006 AGGATTTGGGTGGATATGCCTATT 59.642 41.667 0.00 0.00 37.63 1.73
138 140 2.683211 AGGATTTGGGTGGATATGCC 57.317 50.000 0.00 0.00 37.10 4.40
158 160 1.292223 CAACCCATCGAGACACCGT 59.708 57.895 0.00 0.00 0.00 4.83
159 161 2.100631 GCAACCCATCGAGACACCG 61.101 63.158 0.00 0.00 0.00 4.94
176 178 2.355756 ACGTCATATCTGTTGGCAATGC 59.644 45.455 1.92 0.00 0.00 3.56
178 180 3.309682 CGAACGTCATATCTGTTGGCAAT 59.690 43.478 1.92 0.00 0.00 3.56
182 184 6.035650 ACATTTACGAACGTCATATCTGTTGG 59.964 38.462 2.45 0.00 0.00 3.77
190 192 7.617557 CATCATCAACATTTACGAACGTCATA 58.382 34.615 2.45 0.00 0.00 2.15
192 194 5.670094 GCATCATCAACATTTACGAACGTCA 60.670 40.000 2.45 0.00 0.00 4.35
193 195 4.723862 GCATCATCAACATTTACGAACGTC 59.276 41.667 2.45 0.00 0.00 4.34
195 197 4.491942 GTGCATCATCAACATTTACGAACG 59.508 41.667 0.00 0.00 0.00 3.95
212 214 3.166657 GCGAATTCTGAAACAGTGCATC 58.833 45.455 3.52 0.00 32.61 3.91
219 221 3.306917 TCTACCGCGAATTCTGAAACA 57.693 42.857 8.23 0.00 0.00 2.83
220 222 3.863424 TCATCTACCGCGAATTCTGAAAC 59.137 43.478 8.23 0.00 0.00 2.78
235 237 0.541863 CCACACCCACCCTCATCTAC 59.458 60.000 0.00 0.00 0.00 2.59
236 238 0.118346 ACCACACCCACCCTCATCTA 59.882 55.000 0.00 0.00 0.00 1.98
237 239 1.151810 ACCACACCCACCCTCATCT 60.152 57.895 0.00 0.00 0.00 2.90
242 244 1.151810 AGATCACCACACCCACCCT 60.152 57.895 0.00 0.00 0.00 4.34
244 246 1.002134 CCAGATCACCACACCCACC 60.002 63.158 0.00 0.00 0.00 4.61
259 261 1.604604 ACAATCCGTTGTGGTTCCAG 58.395 50.000 0.00 0.00 46.43 3.86
270 272 1.659794 GCCAACAAGCACAATCCGT 59.340 52.632 0.00 0.00 0.00 4.69
272 274 0.664166 CACGCCAACAAGCACAATCC 60.664 55.000 0.00 0.00 0.00 3.01
289 291 1.063649 CTGAATGCGCTCATGGCAC 59.936 57.895 9.73 0.00 44.23 5.01
292 294 1.164662 CCTCCTGAATGCGCTCATGG 61.165 60.000 9.73 8.64 32.23 3.66
295 297 0.901827 TAACCTCCTGAATGCGCTCA 59.098 50.000 9.73 3.67 0.00 4.26
305 307 0.911769 TCTGGCATGGTAACCTCCTG 59.088 55.000 0.00 0.00 0.00 3.86
315 317 1.474677 CCTCAGCTAGTTCTGGCATGG 60.475 57.143 10.48 5.60 34.91 3.66
321 323 0.244994 ACGTGCCTCAGCTAGTTCTG 59.755 55.000 0.00 0.00 40.80 3.02
339 341 2.431601 ACGAGCAAGAGCAGCGAC 60.432 61.111 9.13 0.00 45.49 5.19
340 342 2.126307 GACGAGCAAGAGCAGCGA 60.126 61.111 9.13 0.00 45.49 4.93
341 343 2.023771 TTGACGAGCAAGAGCAGCG 61.024 57.895 0.00 0.00 45.49 5.18
342 344 3.957260 TTGACGAGCAAGAGCAGC 58.043 55.556 0.00 0.00 45.49 5.25
349 351 2.286833 CGAAAACCTTCTTGACGAGCAA 59.713 45.455 0.00 0.00 34.73 3.91
350 352 1.864711 CGAAAACCTTCTTGACGAGCA 59.135 47.619 0.00 0.00 0.00 4.26
351 353 1.865340 ACGAAAACCTTCTTGACGAGC 59.135 47.619 0.00 0.00 0.00 5.03
358 374 5.866207 AGATGACCTTACGAAAACCTTCTT 58.134 37.500 0.00 0.00 0.00 2.52
382 398 1.264288 GTCTGCCGTTTGAAGTGAAGG 59.736 52.381 0.00 0.00 0.00 3.46
399 415 5.472478 TGTTGATGACTACTACGAACAGTCT 59.528 40.000 0.00 0.00 39.54 3.24
418 465 3.057596 GCCCGTCAAAATCTTGATGTTGA 60.058 43.478 11.08 11.08 44.11 3.18
457 505 6.361481 CGACAAACGACTAACATGACTAAAGA 59.639 38.462 0.00 0.00 45.77 2.52
475 524 1.509162 GCCGCGACATTCGACAAAC 60.509 57.895 8.23 0.00 43.74 2.93
488 537 2.160219 ACAAATGCATATATGAGCCGCG 59.840 45.455 17.10 0.00 0.00 6.46
520 570 8.517862 GTTACGTTACGCAAAATAAAATCATCC 58.482 33.333 4.09 0.00 0.00 3.51
522 572 9.269415 GAGTTACGTTACGCAAAATAAAATCAT 57.731 29.630 4.09 0.00 0.00 2.45
528 578 4.091220 CCGGAGTTACGTTACGCAAAATAA 59.909 41.667 10.48 0.00 0.00 1.40
538 588 3.450578 GATGCAATCCGGAGTTACGTTA 58.549 45.455 11.34 0.00 37.38 3.18
552 602 8.632679 TGTTAAAGAGAGTTTTTCAGATGCAAT 58.367 29.630 0.00 0.00 0.00 3.56
679 741 1.154150 GCAATCGCTGGTCAAGTGC 60.154 57.895 0.00 0.00 36.27 4.40
768 830 0.983378 AGATACTGAGTGGTGGGGCC 60.983 60.000 0.00 0.00 37.90 5.80
769 831 0.912486 AAGATACTGAGTGGTGGGGC 59.088 55.000 0.00 0.00 0.00 5.80
770 832 2.941415 GCAAAGATACTGAGTGGTGGGG 60.941 54.545 0.00 0.00 0.00 4.96
771 833 2.359900 GCAAAGATACTGAGTGGTGGG 58.640 52.381 0.00 0.00 0.00 4.61
772 834 2.026822 AGGCAAAGATACTGAGTGGTGG 60.027 50.000 0.00 0.00 0.00 4.61
773 835 3.005554 CAGGCAAAGATACTGAGTGGTG 58.994 50.000 0.00 0.00 34.21 4.17
788 850 0.106918 ACCTCCGTTGTTTCAGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
807 869 4.202641 ACCTGATACGGTGATGGTATCCTA 60.203 45.833 8.88 0.00 43.51 2.94
808 870 3.165875 CCTGATACGGTGATGGTATCCT 58.834 50.000 8.88 0.00 43.51 3.24
809 871 2.897969 ACCTGATACGGTGATGGTATCC 59.102 50.000 8.88 0.00 43.51 2.59
810 872 4.202223 ACAACCTGATACGGTGATGGTATC 60.202 45.833 5.27 5.27 44.10 2.24
811 873 3.709653 ACAACCTGATACGGTGATGGTAT 59.290 43.478 0.00 0.00 37.36 2.73
877 939 0.108520 GTTTGGTCGGCTCGTATCCA 60.109 55.000 0.00 0.00 0.00 3.41
881 943 0.896940 AGAGGTTTGGTCGGCTCGTA 60.897 55.000 0.00 0.00 0.00 3.43
1051 1125 1.280710 GGATGTGGTGTGGTGGTGATA 59.719 52.381 0.00 0.00 0.00 2.15
1362 1439 2.035442 GGACTTGAGCTTGCCGTCC 61.035 63.158 8.89 8.89 37.57 4.79
1867 1944 3.812019 CACCTCGCGCTCGTAGGT 61.812 66.667 10.42 10.42 42.60 3.08
2684 2772 3.689346 GCAAGCAGAATAAAGCTACAGC 58.311 45.455 0.00 0.00 40.90 4.40
2685 2773 3.618594 TCGCAAGCAGAATAAAGCTACAG 59.381 43.478 0.00 0.00 40.90 2.74
2686 2774 3.595173 TCGCAAGCAGAATAAAGCTACA 58.405 40.909 0.00 0.00 40.90 2.74
2687 2775 4.600012 TTCGCAAGCAGAATAAAGCTAC 57.400 40.909 0.00 0.00 40.90 3.58
2688 2776 5.818136 AATTCGCAAGCAGAATAAAGCTA 57.182 34.783 10.74 0.00 40.90 3.32
2689 2777 4.708726 AATTCGCAAGCAGAATAAAGCT 57.291 36.364 10.74 0.00 44.31 3.74
2690 2778 5.574443 AGAAAATTCGCAAGCAGAATAAAGC 59.426 36.000 10.74 0.00 37.34 3.51
2691 2779 7.572502 AAGAAAATTCGCAAGCAGAATAAAG 57.427 32.000 10.74 0.00 37.34 1.85
2692 2780 8.511321 TCTAAGAAAATTCGCAAGCAGAATAAA 58.489 29.630 10.74 0.00 37.34 1.40
2721 2809 1.144936 CTCCGGCTCCCTGATTGAC 59.855 63.158 0.00 0.00 0.00 3.18
2746 2834 4.452114 GGTTTTCATTCAAGCAATGGAACC 59.548 41.667 13.45 13.45 39.39 3.62
2747 2835 5.178067 CAGGTTTTCATTCAAGCAATGGAAC 59.822 40.000 0.00 0.00 39.39 3.62
2748 2836 5.299148 CAGGTTTTCATTCAAGCAATGGAA 58.701 37.500 0.00 0.00 42.18 3.53
2749 2837 4.800249 GCAGGTTTTCATTCAAGCAATGGA 60.800 41.667 0.00 0.00 42.18 3.41
2750 2838 3.434299 GCAGGTTTTCATTCAAGCAATGG 59.566 43.478 0.00 0.00 42.18 3.16
2767 2855 2.596346 TGACCAAATGATGTTGCAGGT 58.404 42.857 0.00 0.00 0.00 4.00
2834 2948 3.392882 GGTTCGAGAGGTTTAACCGAAA 58.607 45.455 8.63 0.00 44.90 3.46
2839 2953 1.673923 CCCGGGTTCGAGAGGTTTAAC 60.674 57.143 14.18 0.00 39.00 2.01
2876 2992 2.288702 CCATCTTCGCCATGAGACCTAG 60.289 54.545 0.00 0.00 0.00 3.02
2877 2993 1.688735 CCATCTTCGCCATGAGACCTA 59.311 52.381 0.00 0.00 0.00 3.08
2880 2996 1.162800 GGCCATCTTCGCCATGAGAC 61.163 60.000 0.00 0.00 46.27 3.36
2881 2997 1.146930 GGCCATCTTCGCCATGAGA 59.853 57.895 0.00 0.00 46.27 3.27
2882 2998 3.741860 GGCCATCTTCGCCATGAG 58.258 61.111 0.00 0.00 46.27 2.90
2888 3004 1.701704 CAAACTTTGGCCATCTTCGC 58.298 50.000 6.09 0.00 0.00 4.70
2912 3028 3.664107 ACTGTACTGGCATGTTACAGTG 58.336 45.455 24.58 12.56 46.40 3.66
2914 3030 4.314961 TCAACTGTACTGGCATGTTACAG 58.685 43.478 20.86 20.86 42.58 2.74
2915 3031 4.344359 TCAACTGTACTGGCATGTTACA 57.656 40.909 4.66 0.00 0.00 2.41
2916 3032 5.411361 TGATTCAACTGTACTGGCATGTTAC 59.589 40.000 4.66 0.00 0.00 2.50
2917 3033 5.411361 GTGATTCAACTGTACTGGCATGTTA 59.589 40.000 4.66 0.00 0.00 2.41
2918 3034 4.216257 GTGATTCAACTGTACTGGCATGTT 59.784 41.667 4.66 0.00 0.00 2.71
2919 3035 3.753272 GTGATTCAACTGTACTGGCATGT 59.247 43.478 4.66 0.00 0.00 3.21
2920 3036 4.005650 AGTGATTCAACTGTACTGGCATG 58.994 43.478 4.66 0.00 0.00 4.06
2921 3037 4.005650 CAGTGATTCAACTGTACTGGCAT 58.994 43.478 4.66 0.00 42.21 4.40
2922 3038 3.070878 TCAGTGATTCAACTGTACTGGCA 59.929 43.478 4.66 0.00 46.33 4.92
2923 3039 3.664107 TCAGTGATTCAACTGTACTGGC 58.336 45.455 4.66 0.00 46.33 4.85
2924 3040 5.352569 GGATTCAGTGATTCAACTGTACTGG 59.647 44.000 15.09 0.00 46.33 4.00
2925 3041 5.934043 TGGATTCAGTGATTCAACTGTACTG 59.066 40.000 15.09 0.00 46.33 2.74
2926 3042 5.934625 GTGGATTCAGTGATTCAACTGTACT 59.065 40.000 15.09 0.00 46.33 2.73
2927 3043 5.934625 AGTGGATTCAGTGATTCAACTGTAC 59.065 40.000 19.70 8.18 46.33 2.90
2928 3044 6.114187 AGTGGATTCAGTGATTCAACTGTA 57.886 37.500 19.70 6.93 46.33 2.74
2929 3045 4.978099 AGTGGATTCAGTGATTCAACTGT 58.022 39.130 19.70 2.44 46.33 3.55
2931 3047 5.829924 ACAAAGTGGATTCAGTGATTCAACT 59.170 36.000 16.20 16.20 30.38 3.16
2932 3048 5.916883 CACAAAGTGGATTCAGTGATTCAAC 59.083 40.000 12.74 12.74 31.76 3.18
2933 3049 5.827267 TCACAAAGTGGATTCAGTGATTCAA 59.173 36.000 15.09 3.05 33.44 2.69
2934 3050 5.375773 TCACAAAGTGGATTCAGTGATTCA 58.624 37.500 15.09 2.65 33.44 2.57
2935 3051 5.947228 TCACAAAGTGGATTCAGTGATTC 57.053 39.130 6.49 6.49 33.44 2.52
2936 3052 6.096705 TGTTTCACAAAGTGGATTCAGTGATT 59.903 34.615 0.00 0.00 36.39 2.57
2937 3053 5.593909 TGTTTCACAAAGTGGATTCAGTGAT 59.406 36.000 0.00 0.00 36.39 3.06
2938 3054 4.946772 TGTTTCACAAAGTGGATTCAGTGA 59.053 37.500 0.00 0.00 35.35 3.41
3027 3147 1.202770 AGTTGTAGCCTTTGCGACCTT 60.203 47.619 0.00 0.00 41.83 3.50
3028 3148 0.396811 AGTTGTAGCCTTTGCGACCT 59.603 50.000 0.00 0.00 41.83 3.85
3068 3188 9.894783 GTTTAGATGAGTCGTAGCTGAATATTA 57.105 33.333 0.00 0.00 0.00 0.98
3113 3261 4.334481 ACCAACTTTACAGTTCAAAGTCGG 59.666 41.667 4.85 4.85 43.62 4.79
3161 3309 5.878406 ACAAGATAGATTCATCCGTCCTT 57.122 39.130 0.00 0.00 0.00 3.36
3166 3314 6.276091 TGACTGAACAAGATAGATTCATCCG 58.724 40.000 0.00 0.00 32.16 4.18
3193 3341 6.548171 TGCAAGTACCGAAGCATATAAAAAC 58.452 36.000 0.00 0.00 31.05 2.43
3223 3371 1.639298 GAGAACATGGGCGCACAGTC 61.639 60.000 21.09 15.53 0.00 3.51
3224 3372 1.672356 GAGAACATGGGCGCACAGT 60.672 57.895 21.09 13.87 0.00 3.55
3227 3375 2.401766 CCTGAGAACATGGGCGCAC 61.402 63.158 10.83 6.04 0.00 5.34
3245 3393 3.123620 CTTCAGAGCACGGCCAGC 61.124 66.667 2.24 6.26 0.00 4.85
3290 3446 6.374333 TGTGAACTTATTAATCCTGAAGCACC 59.626 38.462 0.00 0.00 0.00 5.01
3328 3486 9.516314 GCAATGTTTCAGTTTTACTTTTACTCT 57.484 29.630 0.00 0.00 0.00 3.24
3329 3487 9.516314 AGCAATGTTTCAGTTTTACTTTTACTC 57.484 29.630 0.00 0.00 0.00 2.59
3359 3517 5.291371 CACTACTCATGTGCTGATTCTTCTG 59.709 44.000 0.00 0.00 32.10 3.02
3360 3518 5.417811 CACTACTCATGTGCTGATTCTTCT 58.582 41.667 0.00 0.00 32.10 2.85
3378 3536 5.643777 AGTTGTATGCTGACAATTCCACTAC 59.356 40.000 7.17 0.00 41.21 2.73
3404 3562 4.048504 TGGTCGATGAATTATGTACAGCG 58.951 43.478 0.33 0.00 43.16 5.18
3407 3565 6.821160 ACACAATGGTCGATGAATTATGTACA 59.179 34.615 0.00 0.00 0.00 2.90
3408 3566 7.011016 TGACACAATGGTCGATGAATTATGTAC 59.989 37.037 0.00 0.00 40.72 2.90
3409 3567 7.044798 TGACACAATGGTCGATGAATTATGTA 58.955 34.615 0.00 0.00 40.72 2.29
3419 3597 4.071423 TGTTCATTGACACAATGGTCGAT 58.929 39.130 19.61 0.00 41.53 3.59
3445 3623 6.480981 TCTTACGTTTACAAAAGGAAGACTGG 59.519 38.462 10.17 0.00 40.71 4.00
3540 3718 2.526046 CCTCAACCGGGGTCACCTT 61.526 63.158 6.32 0.00 36.97 3.50
3543 3721 1.599797 CAACCTCAACCGGGGTCAC 60.600 63.158 6.32 0.00 34.35 3.67
3598 3776 4.175489 CTCGGTCATCGACGGCGT 62.175 66.667 14.65 14.65 43.74 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.