Multiple sequence alignment - TraesCS1B01G279700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G279700 chr1B 100.000 4295 0 0 1 4295 488219295 488215001 0.000000e+00 7932.0
1 TraesCS1B01G279700 chr1B 92.771 166 10 1 1 164 636869907 636869742 5.550000e-59 239.0
2 TraesCS1B01G279700 chr1B 76.875 160 34 3 369 526 357910160 357910318 2.130000e-13 87.9
3 TraesCS1B01G279700 chr1A 91.674 3651 156 37 742 4295 463830450 463826851 0.000000e+00 4922.0
4 TraesCS1B01G279700 chr1A 90.191 367 34 2 161 526 463855103 463854738 1.080000e-130 477.0
5 TraesCS1B01G279700 chr1A 93.252 163 9 1 1 163 518772046 518772206 5.550000e-59 239.0
6 TraesCS1B01G279700 chr1A 91.667 84 6 1 530 613 463854706 463854624 9.760000e-22 115.0
7 TraesCS1B01G279700 chr1D 93.953 2580 97 26 1760 4295 364772417 364769853 0.000000e+00 3845.0
8 TraesCS1B01G279700 chr1D 92.034 954 46 14 842 1778 364773372 364772432 0.000000e+00 1314.0
9 TraesCS1B01G279700 chr1D 90.164 366 35 1 161 526 364774151 364773787 3.890000e-130 475.0
10 TraesCS1B01G279700 chr1D 91.411 163 14 0 1 163 285562266 285562104 1.550000e-54 224.0
11 TraesCS1B01G279700 chr1D 94.048 84 5 0 530 613 364773756 364773673 1.250000e-25 128.0
12 TraesCS1B01G279700 chr5D 82.779 511 54 16 2303 2782 142542095 142542602 3.970000e-115 425.0
13 TraesCS1B01G279700 chr2D 81.980 505 57 23 2309 2782 321610038 321609537 8.650000e-107 398.0
14 TraesCS1B01G279700 chr2D 91.411 163 12 2 1 163 352792545 352792705 5.590000e-54 222.0
15 TraesCS1B01G279700 chr7A 80.392 510 58 24 2303 2782 616160027 616160524 2.460000e-92 350.0
16 TraesCS1B01G279700 chr6B 91.765 170 10 3 1 168 618657421 618657588 2.580000e-57 233.0
17 TraesCS1B01G279700 chr6B 89.535 172 18 0 1932 2103 383821979 383821808 7.230000e-53 219.0
18 TraesCS1B01G279700 chr3B 92.025 163 13 0 1 163 42693303 42693465 3.340000e-56 230.0
19 TraesCS1B01G279700 chr2B 90.419 167 16 0 1 167 31581392 31581558 2.010000e-53 220.0
20 TraesCS1B01G279700 chr6D 90.798 163 15 0 1 163 456280638 456280476 7.230000e-53 219.0
21 TraesCS1B01G279700 chr6D 80.678 295 35 14 1995 2272 384363757 384364046 4.350000e-50 209.0
22 TraesCS1B01G279700 chr6D 80.612 294 37 12 1995 2272 384368795 384369084 4.350000e-50 209.0
23 TraesCS1B01G279700 chr6D 79.798 297 33 19 1995 2272 384366940 384367228 1.580000e-44 191.0
24 TraesCS1B01G279700 chr2A 90.361 166 16 0 1 166 447370803 447370638 7.230000e-53 219.0
25 TraesCS1B01G279700 chrUn 88.068 176 21 0 1928 2103 300810628 300810803 4.350000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G279700 chr1B 488215001 488219295 4294 True 7932.0 7932 100.000000 1 4295 1 chr1B.!!$R1 4294
1 TraesCS1B01G279700 chr1A 463826851 463830450 3599 True 4922.0 4922 91.674000 742 4295 1 chr1A.!!$R1 3553
2 TraesCS1B01G279700 chr1D 364769853 364774151 4298 True 1440.5 3845 92.549750 161 4295 4 chr1D.!!$R2 4134
3 TraesCS1B01G279700 chr5D 142542095 142542602 507 False 425.0 425 82.779000 2303 2782 1 chr5D.!!$F1 479
4 TraesCS1B01G279700 chr2D 321609537 321610038 501 True 398.0 398 81.980000 2309 2782 1 chr2D.!!$R1 473
5 TraesCS1B01G279700 chr6D 384363757 384369084 5327 False 203.0 209 80.362667 1995 2272 3 chr6D.!!$F1 277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.031994 GGTGTTGGTTGTGTGCATCC 59.968 55.000 0.00 0.00 35.54 3.51 F
397 398 0.035739 TGCAAAGGAACCCTCGGTAC 59.964 55.000 0.00 0.00 33.12 3.34 F
1168 1297 1.078918 CGATGCTCCTGCCTTGTGA 60.079 57.895 0.00 0.00 38.71 3.58 F
1799 1979 1.271840 ATTCCTGGCTAGGCAACCGA 61.272 55.000 20.64 12.63 44.22 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1481 0.317938 GCGTATCGTGACAGGCCTAG 60.318 60.000 3.98 2.19 0.00 3.02 R
2325 7563 0.107263 TGCCTTCACACAAGTCTGCA 60.107 50.000 0.00 0.00 0.00 4.41 R
3054 8328 1.539341 CGCAGTCACTGTCTACATCG 58.461 55.000 6.68 0.00 33.43 3.84 R
3656 8946 1.138859 TGTGGATGTAAGGCCGATCAG 59.861 52.381 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.682710 TGGTCTTATATGACTTTGTTATTTGCC 58.317 33.333 15.98 0.00 37.16 4.52
28 29 8.682710 GGTCTTATATGACTTTGTTATTTGCCA 58.317 33.333 15.98 0.00 37.16 4.92
29 30 9.722056 GTCTTATATGACTTTGTTATTTGCCAG 57.278 33.333 10.70 0.00 34.39 4.85
30 31 8.405531 TCTTATATGACTTTGTTATTTGCCAGC 58.594 33.333 0.00 0.00 0.00 4.85
31 32 3.281341 TGACTTTGTTATTTGCCAGCG 57.719 42.857 0.00 0.00 0.00 5.18
32 33 2.030363 TGACTTTGTTATTTGCCAGCGG 60.030 45.455 0.00 0.00 0.00 5.52
33 34 1.272212 ACTTTGTTATTTGCCAGCGGG 59.728 47.619 0.00 0.00 37.18 6.13
34 35 1.272212 CTTTGTTATTTGCCAGCGGGT 59.728 47.619 4.36 0.00 36.17 5.28
35 36 1.333177 TTGTTATTTGCCAGCGGGTT 58.667 45.000 4.36 0.00 36.17 4.11
36 37 1.333177 TGTTATTTGCCAGCGGGTTT 58.667 45.000 4.36 0.00 36.17 3.27
37 38 1.689273 TGTTATTTGCCAGCGGGTTTT 59.311 42.857 4.36 0.00 36.17 2.43
38 39 2.103263 TGTTATTTGCCAGCGGGTTTTT 59.897 40.909 4.36 0.00 36.17 1.94
39 40 2.447244 TATTTGCCAGCGGGTTTTTG 57.553 45.000 4.36 0.00 36.17 2.44
40 41 0.467804 ATTTGCCAGCGGGTTTTTGT 59.532 45.000 4.36 0.00 36.17 2.83
41 42 0.460987 TTTGCCAGCGGGTTTTTGTG 60.461 50.000 4.36 0.00 36.17 3.33
42 43 1.608717 TTGCCAGCGGGTTTTTGTGT 61.609 50.000 4.36 0.00 36.17 3.72
43 44 1.591327 GCCAGCGGGTTTTTGTGTG 60.591 57.895 4.36 0.00 36.17 3.82
44 45 1.813192 CCAGCGGGTTTTTGTGTGT 59.187 52.632 0.00 0.00 0.00 3.72
45 46 0.527385 CCAGCGGGTTTTTGTGTGTG 60.527 55.000 0.00 0.00 0.00 3.82
46 47 0.172352 CAGCGGGTTTTTGTGTGTGT 59.828 50.000 0.00 0.00 0.00 3.72
47 48 0.172352 AGCGGGTTTTTGTGTGTGTG 59.828 50.000 0.00 0.00 0.00 3.82
48 49 1.417577 GCGGGTTTTTGTGTGTGTGC 61.418 55.000 0.00 0.00 0.00 4.57
49 50 1.136872 CGGGTTTTTGTGTGTGTGCG 61.137 55.000 0.00 0.00 0.00 5.34
50 51 0.109039 GGGTTTTTGTGTGTGTGCGT 60.109 50.000 0.00 0.00 0.00 5.24
51 52 1.670380 GGGTTTTTGTGTGTGTGCGTT 60.670 47.619 0.00 0.00 0.00 4.84
52 53 1.388431 GGTTTTTGTGTGTGTGCGTTG 59.612 47.619 0.00 0.00 0.00 4.10
53 54 1.388431 GTTTTTGTGTGTGTGCGTTGG 59.612 47.619 0.00 0.00 0.00 3.77
54 55 0.598562 TTTTGTGTGTGTGCGTTGGT 59.401 45.000 0.00 0.00 0.00 3.67
55 56 0.109551 TTTGTGTGTGTGCGTTGGTG 60.110 50.000 0.00 0.00 0.00 4.17
56 57 1.237954 TTGTGTGTGTGCGTTGGTGT 61.238 50.000 0.00 0.00 0.00 4.16
57 58 1.237954 TGTGTGTGTGCGTTGGTGTT 61.238 50.000 0.00 0.00 0.00 3.32
58 59 0.796491 GTGTGTGTGCGTTGGTGTTG 60.796 55.000 0.00 0.00 0.00 3.33
59 60 1.226547 GTGTGTGCGTTGGTGTTGG 60.227 57.895 0.00 0.00 0.00 3.77
60 61 1.675972 TGTGTGCGTTGGTGTTGGT 60.676 52.632 0.00 0.00 0.00 3.67
61 62 1.244697 TGTGTGCGTTGGTGTTGGTT 61.245 50.000 0.00 0.00 0.00 3.67
62 63 0.800300 GTGTGCGTTGGTGTTGGTTG 60.800 55.000 0.00 0.00 0.00 3.77
63 64 1.244697 TGTGCGTTGGTGTTGGTTGT 61.245 50.000 0.00 0.00 0.00 3.32
64 65 0.800300 GTGCGTTGGTGTTGGTTGTG 60.800 55.000 0.00 0.00 0.00 3.33
65 66 1.244697 TGCGTTGGTGTTGGTTGTGT 61.245 50.000 0.00 0.00 0.00 3.72
66 67 0.800300 GCGTTGGTGTTGGTTGTGTG 60.800 55.000 0.00 0.00 0.00 3.82
67 68 0.800300 CGTTGGTGTTGGTTGTGTGC 60.800 55.000 0.00 0.00 0.00 4.57
68 69 0.244994 GTTGGTGTTGGTTGTGTGCA 59.755 50.000 0.00 0.00 0.00 4.57
69 70 1.134848 GTTGGTGTTGGTTGTGTGCAT 60.135 47.619 0.00 0.00 0.00 3.96
70 71 0.743688 TGGTGTTGGTTGTGTGCATC 59.256 50.000 0.00 0.00 0.00 3.91
71 72 0.031994 GGTGTTGGTTGTGTGCATCC 59.968 55.000 0.00 0.00 35.54 3.51
72 73 1.032014 GTGTTGGTTGTGTGCATCCT 58.968 50.000 0.00 0.00 35.89 3.24
73 74 2.226330 GTGTTGGTTGTGTGCATCCTA 58.774 47.619 0.00 0.00 35.89 2.94
74 75 2.226437 GTGTTGGTTGTGTGCATCCTAG 59.774 50.000 0.00 0.00 35.89 3.02
75 76 1.200020 GTTGGTTGTGTGCATCCTAGC 59.800 52.381 0.00 0.00 35.89 3.42
76 77 0.692476 TGGTTGTGTGCATCCTAGCT 59.308 50.000 0.00 0.00 35.89 3.32
77 78 1.905894 TGGTTGTGTGCATCCTAGCTA 59.094 47.619 0.00 0.00 35.89 3.32
78 79 2.505407 TGGTTGTGTGCATCCTAGCTAT 59.495 45.455 0.00 0.00 35.89 2.97
79 80 2.874701 GGTTGTGTGCATCCTAGCTATG 59.125 50.000 0.00 0.00 32.94 2.23
87 88 3.591196 CATCCTAGCTATGCAGAGGTC 57.409 52.381 17.53 0.00 36.01 3.85
88 89 1.610363 TCCTAGCTATGCAGAGGTCG 58.390 55.000 17.53 10.80 36.01 4.79
89 90 0.600557 CCTAGCTATGCAGAGGTCGG 59.399 60.000 17.53 16.42 31.84 4.79
90 91 0.600557 CTAGCTATGCAGAGGTCGGG 59.399 60.000 17.53 5.10 0.00 5.14
91 92 0.106167 TAGCTATGCAGAGGTCGGGT 60.106 55.000 17.53 0.00 0.00 5.28
92 93 1.227380 GCTATGCAGAGGTCGGGTG 60.227 63.158 10.92 0.00 0.00 4.61
93 94 1.961180 GCTATGCAGAGGTCGGGTGT 61.961 60.000 10.92 0.00 0.00 4.16
94 95 0.179100 CTATGCAGAGGTCGGGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
95 96 0.902984 TATGCAGAGGTCGGGTGTGT 60.903 55.000 0.00 0.00 0.00 3.72
96 97 2.357517 GCAGAGGTCGGGTGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
97 98 2.357517 CAGAGGTCGGGTGTGTGC 60.358 66.667 0.00 0.00 0.00 4.57
98 99 2.524394 AGAGGTCGGGTGTGTGCT 60.524 61.111 0.00 0.00 0.00 4.40
99 100 2.048127 GAGGTCGGGTGTGTGCTC 60.048 66.667 0.00 0.00 0.00 4.26
100 101 2.842462 AGGTCGGGTGTGTGCTCA 60.842 61.111 0.00 0.00 0.00 4.26
101 102 2.665185 GGTCGGGTGTGTGCTCAC 60.665 66.667 11.94 11.94 44.08 3.51
102 103 2.421739 GTCGGGTGTGTGCTCACT 59.578 61.111 18.85 0.00 44.14 3.41
103 104 1.956170 GTCGGGTGTGTGCTCACTG 60.956 63.158 18.85 7.39 44.14 3.66
104 105 2.108976 CGGGTGTGTGCTCACTGT 59.891 61.111 18.85 0.00 44.14 3.55
105 106 2.246739 CGGGTGTGTGCTCACTGTG 61.247 63.158 18.85 0.17 44.14 3.66
106 107 1.153168 GGGTGTGTGCTCACTGTGT 60.153 57.895 18.85 0.00 44.14 3.72
107 108 0.748005 GGGTGTGTGCTCACTGTGTT 60.748 55.000 18.85 0.00 44.14 3.32
108 109 1.094785 GGTGTGTGCTCACTGTGTTT 58.905 50.000 18.85 0.00 44.14 2.83
109 110 1.202177 GGTGTGTGCTCACTGTGTTTG 60.202 52.381 18.85 1.25 44.14 2.93
110 111 1.468520 GTGTGTGCTCACTGTGTTTGT 59.531 47.619 18.85 0.00 44.14 2.83
111 112 2.675844 GTGTGTGCTCACTGTGTTTGTA 59.324 45.455 18.85 0.00 44.14 2.41
112 113 3.312421 GTGTGTGCTCACTGTGTTTGTAT 59.688 43.478 18.85 0.00 44.14 2.29
113 114 3.559655 TGTGTGCTCACTGTGTTTGTATC 59.440 43.478 18.85 0.00 44.14 2.24
114 115 3.058914 GTGTGCTCACTGTGTTTGTATCC 60.059 47.826 11.58 0.00 40.98 2.59
115 116 3.138304 GTGCTCACTGTGTTTGTATCCA 58.862 45.455 7.79 0.00 0.00 3.41
116 117 3.058914 GTGCTCACTGTGTTTGTATCCAC 60.059 47.826 7.79 2.00 0.00 4.02
117 118 3.181455 TGCTCACTGTGTTTGTATCCACT 60.181 43.478 7.79 0.00 32.76 4.00
118 119 3.433615 GCTCACTGTGTTTGTATCCACTC 59.566 47.826 7.79 0.00 32.76 3.51
119 120 3.649073 TCACTGTGTTTGTATCCACTCG 58.351 45.455 7.79 0.00 32.76 4.18
120 121 3.319689 TCACTGTGTTTGTATCCACTCGA 59.680 43.478 7.79 0.00 32.76 4.04
121 122 4.021456 TCACTGTGTTTGTATCCACTCGAT 60.021 41.667 7.79 0.00 32.76 3.59
122 123 4.091945 CACTGTGTTTGTATCCACTCGATG 59.908 45.833 0.00 0.00 32.76 3.84
123 124 3.000041 TGTGTTTGTATCCACTCGATGC 59.000 45.455 0.00 0.00 34.38 3.91
124 125 3.262420 GTGTTTGTATCCACTCGATGCT 58.738 45.455 0.00 0.00 34.84 3.79
125 126 3.684788 GTGTTTGTATCCACTCGATGCTT 59.315 43.478 0.00 0.00 34.84 3.91
126 127 3.932710 TGTTTGTATCCACTCGATGCTTC 59.067 43.478 0.00 0.00 34.84 3.86
127 128 3.885724 TTGTATCCACTCGATGCTTCA 57.114 42.857 0.08 0.00 34.84 3.02
128 129 4.406648 TTGTATCCACTCGATGCTTCAT 57.593 40.909 0.08 0.00 34.84 2.57
129 130 4.406648 TGTATCCACTCGATGCTTCATT 57.593 40.909 0.08 0.00 34.84 2.57
130 131 4.769688 TGTATCCACTCGATGCTTCATTT 58.230 39.130 0.08 0.00 34.84 2.32
131 132 5.185454 TGTATCCACTCGATGCTTCATTTT 58.815 37.500 0.08 0.00 34.84 1.82
132 133 4.627611 ATCCACTCGATGCTTCATTTTG 57.372 40.909 0.08 0.00 0.00 2.44
133 134 3.673902 TCCACTCGATGCTTCATTTTGA 58.326 40.909 0.08 0.00 0.00 2.69
134 135 3.686241 TCCACTCGATGCTTCATTTTGAG 59.314 43.478 0.08 0.94 0.00 3.02
135 136 3.438087 CCACTCGATGCTTCATTTTGAGT 59.562 43.478 0.08 1.52 34.19 3.41
136 137 4.436584 CCACTCGATGCTTCATTTTGAGTC 60.437 45.833 0.08 0.00 32.79 3.36
137 138 4.152938 CACTCGATGCTTCATTTTGAGTCA 59.847 41.667 0.08 0.00 32.79 3.41
138 139 4.756642 ACTCGATGCTTCATTTTGAGTCAA 59.243 37.500 0.08 0.08 30.92 3.18
139 140 5.413833 ACTCGATGCTTCATTTTGAGTCAAT 59.586 36.000 6.36 0.00 30.92 2.57
140 141 6.595326 ACTCGATGCTTCATTTTGAGTCAATA 59.405 34.615 6.36 1.98 30.92 1.90
141 142 7.119699 ACTCGATGCTTCATTTTGAGTCAATAA 59.880 33.333 6.36 4.84 30.92 1.40
142 143 7.815641 TCGATGCTTCATTTTGAGTCAATAAA 58.184 30.769 6.36 0.00 0.00 1.40
143 144 8.296000 TCGATGCTTCATTTTGAGTCAATAAAA 58.704 29.630 6.36 0.00 0.00 1.52
144 145 9.079833 CGATGCTTCATTTTGAGTCAATAAAAT 57.920 29.630 6.36 0.85 37.06 1.82
146 147 8.761575 TGCTTCATTTTGAGTCAATAAAATCC 57.238 30.769 6.36 0.00 35.07 3.01
147 148 8.366401 TGCTTCATTTTGAGTCAATAAAATCCA 58.634 29.630 6.36 0.00 35.07 3.41
148 149 8.650714 GCTTCATTTTGAGTCAATAAAATCCAC 58.349 33.333 6.36 0.00 35.07 4.02
149 150 9.143631 CTTCATTTTGAGTCAATAAAATCCACC 57.856 33.333 6.36 0.00 35.07 4.61
150 151 7.610865 TCATTTTGAGTCAATAAAATCCACCC 58.389 34.615 6.36 0.00 35.07 4.61
151 152 7.454380 TCATTTTGAGTCAATAAAATCCACCCT 59.546 33.333 6.36 0.00 35.07 4.34
152 153 7.610580 TTTTGAGTCAATAAAATCCACCCTT 57.389 32.000 6.36 0.00 0.00 3.95
153 154 7.610580 TTTGAGTCAATAAAATCCACCCTTT 57.389 32.000 6.36 0.00 0.00 3.11
154 155 6.588719 TGAGTCAATAAAATCCACCCTTTG 57.411 37.500 0.00 0.00 0.00 2.77
155 156 6.074648 TGAGTCAATAAAATCCACCCTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
156 157 6.208599 TGAGTCAATAAAATCCACCCTTTGTC 59.791 38.462 0.00 0.00 0.00 3.18
157 158 5.183140 AGTCAATAAAATCCACCCTTTGTCG 59.817 40.000 0.00 0.00 0.00 4.35
158 159 5.182380 GTCAATAAAATCCACCCTTTGTCGA 59.818 40.000 0.00 0.00 0.00 4.20
159 160 5.770663 TCAATAAAATCCACCCTTTGTCGAA 59.229 36.000 0.00 0.00 0.00 3.71
160 161 6.265649 TCAATAAAATCCACCCTTTGTCGAAA 59.734 34.615 0.00 0.00 0.00 3.46
161 162 6.658188 ATAAAATCCACCCTTTGTCGAAAA 57.342 33.333 0.00 0.00 0.00 2.29
162 163 5.346181 AAAATCCACCCTTTGTCGAAAAA 57.654 34.783 0.00 0.00 0.00 1.94
163 164 5.545063 AAATCCACCCTTTGTCGAAAAAT 57.455 34.783 0.15 0.00 0.00 1.82
164 165 6.658188 AAATCCACCCTTTGTCGAAAAATA 57.342 33.333 0.15 0.00 0.00 1.40
165 166 5.897377 ATCCACCCTTTGTCGAAAAATAG 57.103 39.130 0.15 0.00 0.00 1.73
166 167 4.975631 TCCACCCTTTGTCGAAAAATAGA 58.024 39.130 0.15 0.00 0.00 1.98
167 168 5.001232 TCCACCCTTTGTCGAAAAATAGAG 58.999 41.667 0.15 0.00 0.00 2.43
168 169 4.379499 CCACCCTTTGTCGAAAAATAGAGC 60.379 45.833 0.15 0.00 0.00 4.09
169 170 3.756963 ACCCTTTGTCGAAAAATAGAGCC 59.243 43.478 0.15 0.00 0.00 4.70
170 171 3.128764 CCCTTTGTCGAAAAATAGAGCCC 59.871 47.826 0.15 0.00 0.00 5.19
171 172 3.756434 CCTTTGTCGAAAAATAGAGCCCA 59.244 43.478 0.15 0.00 0.00 5.36
172 173 4.399303 CCTTTGTCGAAAAATAGAGCCCAT 59.601 41.667 0.15 0.00 0.00 4.00
175 176 4.191544 TGTCGAAAAATAGAGCCCATCTG 58.808 43.478 0.00 0.00 39.20 2.90
201 202 4.868172 TCATCCCCAAAGAACATGAGAT 57.132 40.909 0.00 0.00 0.00 2.75
203 204 5.582953 TCATCCCCAAAGAACATGAGATTT 58.417 37.500 0.00 0.00 0.00 2.17
213 214 8.922676 CAAAGAACATGAGATTTCAAAATCCAG 58.077 33.333 10.99 3.30 44.55 3.86
215 216 7.600065 AGAACATGAGATTTCAAAATCCAGTG 58.400 34.615 10.99 9.66 44.55 3.66
229 230 4.753662 AGTGACGCTCGGGGGCTA 62.754 66.667 0.00 0.00 0.00 3.93
233 234 4.753662 ACGCTCGGGGGCTACTGA 62.754 66.667 0.00 0.00 0.00 3.41
308 309 1.152030 TCAAGGTCCAGGAGGCAGT 60.152 57.895 0.00 0.00 33.74 4.40
325 326 2.613977 GCAGTCTGGCTCTAGAAAGCAA 60.614 50.000 1.14 0.00 44.35 3.91
332 333 2.171448 GGCTCTAGAAAGCAATCCAGGA 59.829 50.000 6.34 0.00 44.35 3.86
360 361 2.472909 CGGGGCGAAAGAAGCATCC 61.473 63.158 0.00 0.00 36.08 3.51
372 373 1.556911 GAAGCATCCTGGAGAGTTGGA 59.443 52.381 1.52 0.00 0.00 3.53
381 382 2.234661 CTGGAGAGTTGGAGTACATGCA 59.765 50.000 0.00 0.00 0.00 3.96
397 398 0.035739 TGCAAAGGAACCCTCGGTAC 59.964 55.000 0.00 0.00 33.12 3.34
416 417 1.628846 ACGATGTTGGTTAGGAAGCCT 59.371 47.619 0.00 0.00 37.71 4.58
423 424 4.141344 TGTTGGTTAGGAAGCCTGTAAACT 60.141 41.667 0.00 0.00 34.61 2.66
426 427 5.088730 TGGTTAGGAAGCCTGTAAACTCTA 58.911 41.667 0.00 0.00 34.61 2.43
434 435 3.444388 AGCCTGTAAACTCTAGTTCTCGG 59.556 47.826 0.00 0.00 37.25 4.63
436 437 4.397417 GCCTGTAAACTCTAGTTCTCGGTA 59.603 45.833 0.00 0.00 37.25 4.02
460 461 1.345063 TATAAGGCGAGGTTAGGGGC 58.655 55.000 0.00 0.00 0.00 5.80
468 469 1.271163 CGAGGTTAGGGGCAGTTTTCA 60.271 52.381 0.00 0.00 0.00 2.69
480 481 2.680339 GCAGTTTTCAGCCATCTACTCC 59.320 50.000 0.00 0.00 0.00 3.85
487 488 2.092592 TCAGCCATCTACTCCGTAGACA 60.093 50.000 5.92 0.00 46.06 3.41
500 501 2.479656 CCGTAGACATACTCTCGGTAGC 59.520 54.545 0.00 0.00 39.47 3.58
507 508 9.165035 GTAGACATACTCTCGGTAGCTATATTT 57.835 37.037 0.00 0.00 33.51 1.40
530 531 3.772387 TCATCCCTTTTGTAACCATGCA 58.228 40.909 0.00 0.00 0.00 3.96
531 532 4.352009 TCATCCCTTTTGTAACCATGCAT 58.648 39.130 0.00 0.00 0.00 3.96
532 533 4.776837 TCATCCCTTTTGTAACCATGCATT 59.223 37.500 0.00 0.00 0.00 3.56
540 568 4.837896 TGTAACCATGCATTCGAAACAA 57.162 36.364 0.00 0.00 0.00 2.83
542 570 4.517075 TGTAACCATGCATTCGAAACAAGA 59.483 37.500 0.00 0.00 0.00 3.02
546 574 2.661504 TGCATTCGAAACAAGACGTG 57.338 45.000 0.00 0.00 0.00 4.49
548 576 1.399727 GCATTCGAAACAAGACGTGGG 60.400 52.381 0.00 0.00 0.00 4.61
613 641 2.952310 GCAAACTCCCTTCTGTCACTTT 59.048 45.455 0.00 0.00 0.00 2.66
618 657 1.425066 TCCCTTCTGTCACTTTGCCAT 59.575 47.619 0.00 0.00 0.00 4.40
623 662 3.988379 TCTGTCACTTTGCCATTTGTC 57.012 42.857 0.00 0.00 0.00 3.18
630 669 5.005682 GTCACTTTGCCATTTGTCAGTTTTC 59.994 40.000 0.00 0.00 0.00 2.29
643 704 2.094700 TCAGTTTTCCGTCGGAGATCAG 60.095 50.000 14.79 6.51 40.67 2.90
650 711 2.654939 GTCGGAGATCAGACGCAAC 58.345 57.895 0.00 0.00 40.67 4.17
667 746 7.898309 CAGACGCAACTTGTTATGTAAGATTAC 59.102 37.037 0.00 0.00 0.00 1.89
668 747 7.817962 AGACGCAACTTGTTATGTAAGATTACT 59.182 33.333 4.50 0.00 34.77 2.24
669 748 8.319143 ACGCAACTTGTTATGTAAGATTACTT 57.681 30.769 4.50 1.13 39.81 2.24
670 749 9.426837 ACGCAACTTGTTATGTAAGATTACTTA 57.573 29.630 4.50 0.26 37.53 2.24
705 784 7.730364 AATGTAAGGTTACTTGTGAACAGAG 57.270 36.000 1.76 0.00 37.53 3.35
707 786 6.646267 TGTAAGGTTACTTGTGAACAGAGTT 58.354 36.000 1.76 0.00 37.53 3.01
714 793 5.048846 ACTTGTGAACAGAGTTGGGTTAT 57.951 39.130 0.00 0.00 0.00 1.89
725 804 3.248024 AGTTGGGTTATGGACTGTCTGA 58.752 45.455 7.85 0.00 0.00 3.27
730 809 3.368531 GGGTTATGGACTGTCTGACTGAC 60.369 52.174 19.67 13.74 45.54 3.51
733 812 2.015456 TGGACTGTCTGACTGACCAT 57.985 50.000 25.88 5.29 44.75 3.55
737 816 2.300152 GACTGTCTGACTGACCATGGAA 59.700 50.000 21.47 5.12 44.75 3.53
775 878 4.186926 CTGTGTGTACCGAGCTACTAGTA 58.813 47.826 1.89 1.89 0.00 1.82
776 879 4.186926 TGTGTGTACCGAGCTACTAGTAG 58.813 47.826 23.25 23.25 36.29 2.57
801 904 6.451064 TCCAGAAAAGAAAACTCTGTTTCC 57.549 37.500 0.00 0.00 38.10 3.13
811 914 1.602377 ACTCTGTTTCCGCGGAAAAAG 59.398 47.619 44.84 44.84 45.86 2.27
821 924 1.982913 CGCGGAAAAAGTAATTGTGGC 59.017 47.619 0.00 0.00 0.00 5.01
904 1033 1.511747 AGCCATAATCCCTCTCCCTCT 59.488 52.381 0.00 0.00 0.00 3.69
944 1073 3.459965 CTCAGCTCAGCTCCGCCT 61.460 66.667 0.00 0.00 36.40 5.52
946 1075 4.527583 CAGCTCAGCTCCGCCTCC 62.528 72.222 0.00 0.00 36.40 4.30
961 1090 4.116585 TCCGCTCGAGCCCTCTCT 62.117 66.667 30.66 0.00 37.19 3.10
1164 1293 1.264749 TGGTACGATGCTCCTGCCTT 61.265 55.000 0.00 0.00 38.71 4.35
1168 1297 1.078918 CGATGCTCCTGCCTTGTGA 60.079 57.895 0.00 0.00 38.71 3.58
1176 1305 1.277842 TCCTGCCTTGTGAATTCGCTA 59.722 47.619 19.21 11.35 0.00 4.26
1199 1328 5.918608 ACCTGTAGATAATCAAACAGCGAT 58.081 37.500 5.84 0.00 38.39 4.58
1258 1401 8.918202 TCAGTTAGAATGGTGAAAATTGTACT 57.082 30.769 0.00 0.00 0.00 2.73
1294 1437 3.468770 TGCATTGCTTTGCTTCAAATGT 58.531 36.364 10.49 0.00 43.18 2.71
1338 1481 2.159352 GGTCTGTACGAGAAAGAGAGGC 60.159 54.545 0.00 0.00 30.26 4.70
1448 1591 2.741092 CGCCCGGTGCAGGTATAT 59.259 61.111 14.17 0.00 41.33 0.86
1462 1605 4.932200 GCAGGTATATATCAGGTGTGCTTC 59.068 45.833 0.00 0.00 0.00 3.86
1473 1617 4.469586 TCAGGTGTGCTTCATAGTGGAATA 59.530 41.667 0.00 0.00 0.00 1.75
1475 1619 5.295292 CAGGTGTGCTTCATAGTGGAATAAG 59.705 44.000 0.00 0.00 0.00 1.73
1498 1643 6.762333 AGCAGTCATACATATATGCTCAACA 58.238 36.000 12.79 0.00 39.72 3.33
1500 1645 7.881751 AGCAGTCATACATATATGCTCAACATT 59.118 33.333 12.79 0.00 39.72 2.71
1538 1685 8.669243 AGCTTGTAAAAATCAGCTACTAATGTC 58.331 33.333 0.00 0.00 0.00 3.06
1539 1686 8.669243 GCTTGTAAAAATCAGCTACTAATGTCT 58.331 33.333 0.00 0.00 0.00 3.41
1699 1846 3.112263 CAACCACCCATCCTAAGGTAGA 58.888 50.000 0.00 0.00 33.52 2.59
1714 1861 1.551883 GGTAGAGGTCTTGGCGGTTTA 59.448 52.381 0.00 0.00 0.00 2.01
1717 1864 1.906574 AGAGGTCTTGGCGGTTTATCA 59.093 47.619 0.00 0.00 0.00 2.15
1740 1887 4.901868 TGTTTATTTCTAGAAGCGGTGGT 58.098 39.130 5.12 0.00 0.00 4.16
1799 1979 1.271840 ATTCCTGGCTAGGCAACCGA 61.272 55.000 20.64 12.63 44.22 4.69
1883 2063 4.154375 GCAACTTACTTTTCTAGTCAGGGC 59.846 45.833 0.00 0.00 38.33 5.19
1948 2128 7.159372 AGACAACCGTTATGTAATCTCTGTTT 58.841 34.615 0.00 0.00 0.00 2.83
2002 2182 5.221803 CCCTGATGCAGTATATCACTTTCCT 60.222 44.000 0.00 0.00 34.26 3.36
2133 7352 4.998671 TGATTTGTTTTGCTTCCTGTCA 57.001 36.364 0.00 0.00 0.00 3.58
2134 7353 5.336150 TGATTTGTTTTGCTTCCTGTCAA 57.664 34.783 0.00 0.00 0.00 3.18
2244 7482 6.187682 TCCCTTCTGAACTCTGAAAAACTTT 58.812 36.000 1.42 0.00 34.24 2.66
2272 7510 9.273016 GTTTCATATAGGCTGCAGTTAGATTTA 57.727 33.333 16.64 0.00 0.00 1.40
2338 7576 5.104374 AGATTTGTTTTGCAGACTTGTGTG 58.896 37.500 4.27 0.00 0.00 3.82
2393 7633 6.691508 TGAGTAATCATCCAGATAATGACGG 58.308 40.000 0.00 0.00 36.04 4.79
2617 7891 8.888716 TGATGGTTGTTGTATACACATATTGTC 58.111 33.333 4.68 1.08 39.91 3.18
2903 8177 9.045223 TCCGACAATCTAATGATATGTTTTGAG 57.955 33.333 0.00 0.00 31.70 3.02
2904 8178 7.800380 CCGACAATCTAATGATATGTTTTGAGC 59.200 37.037 0.00 0.00 31.70 4.26
2907 8181 8.124823 ACAATCTAATGATATGTTTTGAGCGTG 58.875 33.333 0.00 0.00 31.70 5.34
2938 8212 2.935201 GCATACTCTCTCCAGTTGCAAG 59.065 50.000 0.00 0.00 33.85 4.01
3054 8328 5.677178 GGCATTTCGAAAACGATACAAGATC 59.323 40.000 15.66 0.00 0.00 2.75
3075 8349 1.202582 GATGTAGACAGTGACTGCGGT 59.797 52.381 13.37 0.00 34.37 5.68
3115 8389 5.581605 TCAACTGCAGTTCTTTGAAATGAC 58.418 37.500 28.97 4.30 35.83 3.06
3123 8397 8.579006 TGCAGTTCTTTGAAATGACATTAGAAT 58.421 29.630 12.16 0.00 0.00 2.40
3144 8418 1.808411 TTTGGAGTTGAGCCGATGTC 58.192 50.000 0.00 0.00 0.00 3.06
3288 8562 0.032017 TTGCCCTAGAGAGACCTCCC 60.032 60.000 0.00 0.00 40.30 4.30
3321 8595 9.396022 ACAATGAATATAACACTTTACCAGAGG 57.604 33.333 0.00 0.00 0.00 3.69
3332 8606 5.186021 CACTTTACCAGAGGTCATACTCACT 59.814 44.000 0.00 0.00 39.97 3.41
3336 8610 4.274147 ACCAGAGGTCATACTCACTGTAG 58.726 47.826 0.00 0.00 39.97 2.74
3337 8611 4.263994 ACCAGAGGTCATACTCACTGTAGT 60.264 45.833 0.00 0.00 39.97 2.73
3368 8642 6.380995 GTCAATCACAATGTCATTTGTAGCA 58.619 36.000 0.00 0.00 37.73 3.49
3426 8706 8.547173 GTGGAATGAGGAATCTATTGAGGATAT 58.453 37.037 0.00 0.00 0.00 1.63
3534 8823 5.550290 TCTGTATGAGCATGTGAAAGTTGA 58.450 37.500 0.00 0.00 0.00 3.18
3627 8917 4.284123 TGCTCGCTCGCATTTTCT 57.716 50.000 0.00 0.00 34.44 2.52
3656 8946 3.131046 CCCATGGCTACTTTGGTGAAATC 59.869 47.826 6.09 0.00 0.00 2.17
3685 8975 5.067153 CGGCCTTACATCCACATTTGAAATA 59.933 40.000 0.00 0.00 0.00 1.40
3734 9037 5.300034 CAGGCCATGTATATTCACAACACAT 59.700 40.000 5.01 0.00 30.84 3.21
3810 9113 5.874895 AGTTTTTACAATAACTCCGCTCC 57.125 39.130 0.00 0.00 28.79 4.70
3863 9166 4.521130 TTGCTACACCAGTTACTCTCAG 57.479 45.455 0.00 0.00 0.00 3.35
3864 9167 3.497332 TGCTACACCAGTTACTCTCAGT 58.503 45.455 0.00 0.00 0.00 3.41
3868 9171 4.073293 ACACCAGTTACTCTCAGTTTGG 57.927 45.455 0.00 0.00 32.63 3.28
3881 9184 1.672881 CAGTTTGGCATACTGCTAGGC 59.327 52.381 22.06 0.00 44.28 3.93
3946 9270 5.513788 GCCAGAGCTATGGATTTCAGGATAA 60.514 44.000 31.31 0.00 43.57 1.75
3979 9303 3.618594 CACAGTATCCAGGTTCATTCACG 59.381 47.826 0.00 0.00 0.00 4.35
4118 9442 7.951347 AAATGATAGCAGATCTTTCCTGTTT 57.049 32.000 0.00 0.00 34.29 2.83
4175 9499 1.806542 CTGCTATGTTTGTCGTGCCTT 59.193 47.619 0.00 0.00 0.00 4.35
4181 9505 1.668751 TGTTTGTCGTGCCTTGACTTC 59.331 47.619 2.40 0.00 37.26 3.01
4241 9565 3.746045 TTCCTGTACTTGACACACCTC 57.254 47.619 0.00 0.00 33.31 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.682710 GGCAAATAACAAAGTCATATAAGACCA 58.317 33.333 4.52 0.00 39.34 4.02
2 3 8.682710 TGGCAAATAACAAAGTCATATAAGACC 58.317 33.333 4.52 0.00 39.34 3.85
3 4 9.722056 CTGGCAAATAACAAAGTCATATAAGAC 57.278 33.333 0.00 0.00 38.81 3.01
4 5 8.405531 GCTGGCAAATAACAAAGTCATATAAGA 58.594 33.333 0.00 0.00 0.00 2.10
5 6 7.376866 CGCTGGCAAATAACAAAGTCATATAAG 59.623 37.037 0.00 0.00 0.00 1.73
6 7 7.192913 CGCTGGCAAATAACAAAGTCATATAA 58.807 34.615 0.00 0.00 0.00 0.98
7 8 6.238621 CCGCTGGCAAATAACAAAGTCATATA 60.239 38.462 0.00 0.00 0.00 0.86
8 9 5.450412 CCGCTGGCAAATAACAAAGTCATAT 60.450 40.000 0.00 0.00 0.00 1.78
9 10 4.142491 CCGCTGGCAAATAACAAAGTCATA 60.142 41.667 0.00 0.00 0.00 2.15
11 12 2.030363 CCGCTGGCAAATAACAAAGTCA 60.030 45.455 0.00 0.00 0.00 3.41
12 13 2.595386 CCGCTGGCAAATAACAAAGTC 58.405 47.619 0.00 0.00 0.00 3.01
13 14 1.272212 CCCGCTGGCAAATAACAAAGT 59.728 47.619 0.00 0.00 0.00 2.66
14 15 1.272212 ACCCGCTGGCAAATAACAAAG 59.728 47.619 0.00 0.00 33.59 2.77
15 16 1.333177 ACCCGCTGGCAAATAACAAA 58.667 45.000 0.00 0.00 33.59 2.83
16 17 1.333177 AACCCGCTGGCAAATAACAA 58.667 45.000 0.00 0.00 33.59 2.83
17 18 1.333177 AAACCCGCTGGCAAATAACA 58.667 45.000 0.00 0.00 33.59 2.41
18 19 2.448926 AAAACCCGCTGGCAAATAAC 57.551 45.000 0.00 0.00 33.59 1.89
19 20 2.103263 ACAAAAACCCGCTGGCAAATAA 59.897 40.909 0.00 0.00 33.59 1.40
20 21 1.689273 ACAAAAACCCGCTGGCAAATA 59.311 42.857 0.00 0.00 33.59 1.40
21 22 0.467804 ACAAAAACCCGCTGGCAAAT 59.532 45.000 0.00 0.00 33.59 2.32
22 23 0.460987 CACAAAAACCCGCTGGCAAA 60.461 50.000 0.00 0.00 33.59 3.68
23 24 1.142748 CACAAAAACCCGCTGGCAA 59.857 52.632 0.00 0.00 33.59 4.52
24 25 2.055042 ACACAAAAACCCGCTGGCA 61.055 52.632 0.00 0.00 33.59 4.92
25 26 1.591327 CACACAAAAACCCGCTGGC 60.591 57.895 0.00 0.00 33.59 4.85
26 27 0.527385 CACACACAAAAACCCGCTGG 60.527 55.000 0.00 0.00 37.80 4.85
27 28 0.172352 ACACACACAAAAACCCGCTG 59.828 50.000 0.00 0.00 0.00 5.18
28 29 0.172352 CACACACACAAAAACCCGCT 59.828 50.000 0.00 0.00 0.00 5.52
29 30 1.417577 GCACACACACAAAAACCCGC 61.418 55.000 0.00 0.00 0.00 6.13
30 31 1.136872 CGCACACACACAAAAACCCG 61.137 55.000 0.00 0.00 0.00 5.28
31 32 0.109039 ACGCACACACACAAAAACCC 60.109 50.000 0.00 0.00 0.00 4.11
32 33 1.388431 CAACGCACACACACAAAAACC 59.612 47.619 0.00 0.00 0.00 3.27
33 34 1.388431 CCAACGCACACACACAAAAAC 59.612 47.619 0.00 0.00 0.00 2.43
34 35 1.000163 ACCAACGCACACACACAAAAA 60.000 42.857 0.00 0.00 0.00 1.94
35 36 0.598562 ACCAACGCACACACACAAAA 59.401 45.000 0.00 0.00 0.00 2.44
36 37 0.109551 CACCAACGCACACACACAAA 60.110 50.000 0.00 0.00 0.00 2.83
37 38 1.237954 ACACCAACGCACACACACAA 61.238 50.000 0.00 0.00 0.00 3.33
38 39 1.237954 AACACCAACGCACACACACA 61.238 50.000 0.00 0.00 0.00 3.72
39 40 0.796491 CAACACCAACGCACACACAC 60.796 55.000 0.00 0.00 0.00 3.82
40 41 1.503994 CAACACCAACGCACACACA 59.496 52.632 0.00 0.00 0.00 3.72
41 42 1.226547 CCAACACCAACGCACACAC 60.227 57.895 0.00 0.00 0.00 3.82
42 43 1.244697 AACCAACACCAACGCACACA 61.245 50.000 0.00 0.00 0.00 3.72
43 44 0.800300 CAACCAACACCAACGCACAC 60.800 55.000 0.00 0.00 0.00 3.82
44 45 1.244697 ACAACCAACACCAACGCACA 61.245 50.000 0.00 0.00 0.00 4.57
45 46 0.800300 CACAACCAACACCAACGCAC 60.800 55.000 0.00 0.00 0.00 5.34
46 47 1.244697 ACACAACCAACACCAACGCA 61.245 50.000 0.00 0.00 0.00 5.24
47 48 0.800300 CACACAACCAACACCAACGC 60.800 55.000 0.00 0.00 0.00 4.84
48 49 0.800300 GCACACAACCAACACCAACG 60.800 55.000 0.00 0.00 0.00 4.10
49 50 0.244994 TGCACACAACCAACACCAAC 59.755 50.000 0.00 0.00 0.00 3.77
50 51 1.135915 GATGCACACAACCAACACCAA 59.864 47.619 0.00 0.00 0.00 3.67
51 52 0.743688 GATGCACACAACCAACACCA 59.256 50.000 0.00 0.00 0.00 4.17
52 53 0.031994 GGATGCACACAACCAACACC 59.968 55.000 0.00 0.00 38.58 4.16
53 54 1.032014 AGGATGCACACAACCAACAC 58.968 50.000 0.00 0.00 41.12 3.32
54 55 2.503331 CTAGGATGCACACAACCAACA 58.497 47.619 0.00 0.00 41.12 3.33
55 56 1.200020 GCTAGGATGCACACAACCAAC 59.800 52.381 0.00 0.00 41.12 3.77
56 57 1.073763 AGCTAGGATGCACACAACCAA 59.926 47.619 0.00 0.00 41.12 3.67
57 58 0.692476 AGCTAGGATGCACACAACCA 59.308 50.000 0.00 0.00 41.12 3.67
58 59 2.691409 TAGCTAGGATGCACACAACC 57.309 50.000 0.00 0.00 39.00 3.77
67 68 2.094803 CGACCTCTGCATAGCTAGGATG 60.095 54.545 10.11 0.00 36.44 3.51
68 69 2.166829 CGACCTCTGCATAGCTAGGAT 58.833 52.381 10.11 0.00 36.44 3.24
69 70 1.610363 CGACCTCTGCATAGCTAGGA 58.390 55.000 10.11 0.00 36.44 2.94
70 71 0.600557 CCGACCTCTGCATAGCTAGG 59.399 60.000 0.00 0.00 38.02 3.02
71 72 0.600557 CCCGACCTCTGCATAGCTAG 59.399 60.000 0.00 0.00 0.00 3.42
72 73 0.106167 ACCCGACCTCTGCATAGCTA 60.106 55.000 0.00 0.00 0.00 3.32
73 74 1.381872 ACCCGACCTCTGCATAGCT 60.382 57.895 0.00 0.00 0.00 3.32
74 75 1.227380 CACCCGACCTCTGCATAGC 60.227 63.158 0.00 0.00 0.00 2.97
75 76 0.179100 CACACCCGACCTCTGCATAG 60.179 60.000 0.00 0.00 0.00 2.23
76 77 0.902984 ACACACCCGACCTCTGCATA 60.903 55.000 0.00 0.00 0.00 3.14
77 78 2.217038 ACACACCCGACCTCTGCAT 61.217 57.895 0.00 0.00 0.00 3.96
78 79 2.842462 ACACACCCGACCTCTGCA 60.842 61.111 0.00 0.00 0.00 4.41
79 80 2.357517 CACACACCCGACCTCTGC 60.358 66.667 0.00 0.00 0.00 4.26
80 81 2.357517 GCACACACCCGACCTCTG 60.358 66.667 0.00 0.00 0.00 3.35
81 82 2.524394 AGCACACACCCGACCTCT 60.524 61.111 0.00 0.00 0.00 3.69
82 83 2.048127 GAGCACACACCCGACCTC 60.048 66.667 0.00 0.00 0.00 3.85
83 84 2.842462 TGAGCACACACCCGACCT 60.842 61.111 0.00 0.00 0.00 3.85
84 85 2.665185 GTGAGCACACACCCGACC 60.665 66.667 9.58 0.00 45.32 4.79
92 93 3.058914 GGATACAAACACAGTGAGCACAC 60.059 47.826 7.81 6.11 46.24 3.82
93 94 3.138304 GGATACAAACACAGTGAGCACA 58.862 45.455 7.81 0.00 0.00 4.57
94 95 3.813529 GGATACAAACACAGTGAGCAC 57.186 47.619 7.81 0.00 0.00 4.40
109 110 5.294306 TCAAAATGAAGCATCGAGTGGATAC 59.706 40.000 0.00 0.00 32.85 2.24
110 111 5.427378 TCAAAATGAAGCATCGAGTGGATA 58.573 37.500 0.00 0.00 32.85 2.59
111 112 4.264253 TCAAAATGAAGCATCGAGTGGAT 58.736 39.130 0.00 0.00 35.09 3.41
112 113 3.673902 TCAAAATGAAGCATCGAGTGGA 58.326 40.909 0.00 0.00 0.00 4.02
113 114 3.438087 ACTCAAAATGAAGCATCGAGTGG 59.562 43.478 0.00 0.00 31.36 4.00
114 115 4.152938 TGACTCAAAATGAAGCATCGAGTG 59.847 41.667 10.09 0.00 32.65 3.51
115 116 4.318332 TGACTCAAAATGAAGCATCGAGT 58.682 39.130 0.00 0.00 35.07 4.18
116 117 4.934075 TGACTCAAAATGAAGCATCGAG 57.066 40.909 0.00 0.00 0.00 4.04
117 118 5.885230 ATTGACTCAAAATGAAGCATCGA 57.115 34.783 0.00 0.00 0.00 3.59
118 119 8.451687 TTTTATTGACTCAAAATGAAGCATCG 57.548 30.769 0.00 0.00 0.00 3.84
120 121 9.374838 GGATTTTATTGACTCAAAATGAAGCAT 57.625 29.630 0.00 0.00 35.14 3.79
121 122 8.366401 TGGATTTTATTGACTCAAAATGAAGCA 58.634 29.630 0.00 0.00 35.14 3.91
122 123 8.650714 GTGGATTTTATTGACTCAAAATGAAGC 58.349 33.333 0.00 0.00 35.14 3.86
123 124 9.143631 GGTGGATTTTATTGACTCAAAATGAAG 57.856 33.333 0.00 0.00 35.14 3.02
124 125 8.093927 GGGTGGATTTTATTGACTCAAAATGAA 58.906 33.333 0.00 0.00 35.14 2.57
125 126 7.454380 AGGGTGGATTTTATTGACTCAAAATGA 59.546 33.333 0.00 0.00 35.14 2.57
126 127 7.614494 AGGGTGGATTTTATTGACTCAAAATG 58.386 34.615 0.00 0.00 35.14 2.32
127 128 7.797121 AGGGTGGATTTTATTGACTCAAAAT 57.203 32.000 0.00 0.00 37.12 1.82
128 129 7.610580 AAGGGTGGATTTTATTGACTCAAAA 57.389 32.000 0.00 0.00 0.00 2.44
129 130 7.070571 ACAAAGGGTGGATTTTATTGACTCAAA 59.929 33.333 0.00 0.00 0.00 2.69
130 131 6.553100 ACAAAGGGTGGATTTTATTGACTCAA 59.447 34.615 0.00 0.00 0.00 3.02
131 132 6.074648 ACAAAGGGTGGATTTTATTGACTCA 58.925 36.000 0.00 0.00 0.00 3.41
132 133 6.590234 ACAAAGGGTGGATTTTATTGACTC 57.410 37.500 0.00 0.00 0.00 3.36
133 134 5.183140 CGACAAAGGGTGGATTTTATTGACT 59.817 40.000 0.00 0.00 0.00 3.41
134 135 5.182380 TCGACAAAGGGTGGATTTTATTGAC 59.818 40.000 0.00 0.00 28.37 3.18
135 136 5.317808 TCGACAAAGGGTGGATTTTATTGA 58.682 37.500 0.00 0.00 28.37 2.57
136 137 5.637006 TCGACAAAGGGTGGATTTTATTG 57.363 39.130 0.00 0.00 28.37 1.90
137 138 6.658188 TTTCGACAAAGGGTGGATTTTATT 57.342 33.333 0.00 0.00 34.00 1.40
138 139 6.658188 TTTTCGACAAAGGGTGGATTTTAT 57.342 33.333 0.00 0.00 34.00 1.40
139 140 6.466885 TTTTTCGACAAAGGGTGGATTTTA 57.533 33.333 0.00 0.00 34.00 1.52
140 141 5.346181 TTTTTCGACAAAGGGTGGATTTT 57.654 34.783 0.00 0.00 34.00 1.82
141 142 5.545063 ATTTTTCGACAAAGGGTGGATTT 57.455 34.783 2.86 0.00 34.00 2.17
142 143 6.007703 TCTATTTTTCGACAAAGGGTGGATT 58.992 36.000 2.86 0.00 34.00 3.01
143 144 5.566469 TCTATTTTTCGACAAAGGGTGGAT 58.434 37.500 2.86 0.00 34.00 3.41
144 145 4.975631 TCTATTTTTCGACAAAGGGTGGA 58.024 39.130 2.86 0.00 31.87 4.02
145 146 4.379499 GCTCTATTTTTCGACAAAGGGTGG 60.379 45.833 2.86 0.00 0.00 4.61
146 147 4.379499 GGCTCTATTTTTCGACAAAGGGTG 60.379 45.833 2.86 1.19 0.00 4.61
147 148 3.756963 GGCTCTATTTTTCGACAAAGGGT 59.243 43.478 2.86 0.00 0.00 4.34
148 149 3.128764 GGGCTCTATTTTTCGACAAAGGG 59.871 47.826 2.86 0.00 0.00 3.95
149 150 3.756434 TGGGCTCTATTTTTCGACAAAGG 59.244 43.478 2.86 0.00 0.00 3.11
150 151 5.355350 AGATGGGCTCTATTTTTCGACAAAG 59.645 40.000 2.86 0.00 30.26 2.77
151 152 5.123820 CAGATGGGCTCTATTTTTCGACAAA 59.876 40.000 0.00 0.00 31.13 2.83
152 153 4.635765 CAGATGGGCTCTATTTTTCGACAA 59.364 41.667 0.00 0.00 31.13 3.18
153 154 4.191544 CAGATGGGCTCTATTTTTCGACA 58.808 43.478 0.00 0.00 31.13 4.35
154 155 3.561725 CCAGATGGGCTCTATTTTTCGAC 59.438 47.826 0.00 0.00 31.13 4.20
155 156 3.808728 CCAGATGGGCTCTATTTTTCGA 58.191 45.455 0.00 0.00 31.13 3.71
177 178 4.766891 TCTCATGTTCTTTGGGGATGAAAC 59.233 41.667 0.00 0.00 0.00 2.78
182 183 5.582953 TGAAATCTCATGTTCTTTGGGGAT 58.417 37.500 0.00 0.00 0.00 3.85
201 202 2.223144 CGAGCGTCACTGGATTTTGAAA 59.777 45.455 0.00 0.00 0.00 2.69
203 204 1.428448 CGAGCGTCACTGGATTTTGA 58.572 50.000 0.00 0.00 0.00 2.69
213 214 4.509737 GTAGCCCCCGAGCGTCAC 62.510 72.222 0.00 0.00 38.01 3.67
215 216 4.208686 CAGTAGCCCCCGAGCGTC 62.209 72.222 0.00 0.00 38.01 5.19
229 230 1.640428 CGGTGTATTGCATCGTCAGT 58.360 50.000 0.00 0.00 45.91 3.41
308 309 2.840038 TGGATTGCTTTCTAGAGCCAGA 59.160 45.455 1.83 0.00 42.01 3.86
316 317 3.454858 AGGTCTCCTGGATTGCTTTCTA 58.545 45.455 0.00 0.00 29.57 2.10
319 320 2.092699 GCTAGGTCTCCTGGATTGCTTT 60.093 50.000 0.00 0.00 33.74 3.51
325 326 2.196925 CGCGCTAGGTCTCCTGGAT 61.197 63.158 5.56 0.00 33.74 3.41
348 349 3.625649 ACTCTCCAGGATGCTTCTTTC 57.374 47.619 0.00 0.00 31.97 2.62
351 352 1.558756 CCAACTCTCCAGGATGCTTCT 59.441 52.381 0.00 0.00 31.97 2.85
360 361 2.234661 TGCATGTACTCCAACTCTCCAG 59.765 50.000 0.00 0.00 0.00 3.86
372 373 2.615493 CGAGGGTTCCTTTGCATGTACT 60.615 50.000 0.00 0.00 31.76 2.73
381 382 1.206371 CATCGTACCGAGGGTTCCTTT 59.794 52.381 0.00 0.00 39.91 3.11
397 398 2.009774 CAGGCTTCCTAACCAACATCG 58.990 52.381 0.00 0.00 29.64 3.84
409 410 5.408880 AGAACTAGAGTTTACAGGCTTCC 57.591 43.478 0.00 0.00 38.56 3.46
410 411 5.096849 CGAGAACTAGAGTTTACAGGCTTC 58.903 45.833 0.00 0.00 38.56 3.86
411 412 4.082136 CCGAGAACTAGAGTTTACAGGCTT 60.082 45.833 0.00 0.00 38.56 4.35
416 417 5.564550 AGGTACCGAGAACTAGAGTTTACA 58.435 41.667 6.18 0.00 38.56 2.41
423 424 7.814264 CCTTATAAAGGTACCGAGAACTAGA 57.186 40.000 6.18 0.00 43.95 2.43
460 461 2.932614 CGGAGTAGATGGCTGAAAACTG 59.067 50.000 0.00 0.00 0.00 3.16
480 481 3.391965 AGCTACCGAGAGTATGTCTACG 58.608 50.000 0.00 0.00 34.71 3.51
507 508 5.514169 TGCATGGTTACAAAAGGGATGATA 58.486 37.500 0.00 0.00 0.00 2.15
526 527 2.095768 CCACGTCTTGTTTCGAATGCAT 60.096 45.455 0.00 0.00 0.00 3.96
527 528 1.262950 CCACGTCTTGTTTCGAATGCA 59.737 47.619 0.00 0.00 0.00 3.96
528 529 1.399727 CCCACGTCTTGTTTCGAATGC 60.400 52.381 0.00 0.00 0.00 3.56
530 531 1.202722 ACCCCACGTCTTGTTTCGAAT 60.203 47.619 0.00 0.00 0.00 3.34
531 532 0.178533 ACCCCACGTCTTGTTTCGAA 59.821 50.000 0.00 0.00 0.00 3.71
532 533 1.039068 TACCCCACGTCTTGTTTCGA 58.961 50.000 0.00 0.00 0.00 3.71
540 568 2.105766 GTGAGGTAATACCCCACGTCT 58.894 52.381 8.33 0.00 39.75 4.18
542 570 1.197812 GGTGAGGTAATACCCCACGT 58.802 55.000 16.22 0.00 39.75 4.49
546 574 1.411612 CTCACGGTGAGGTAATACCCC 59.588 57.143 26.72 0.00 40.71 4.95
613 641 2.028130 ACGGAAAACTGACAAATGGCA 58.972 42.857 0.00 0.00 0.00 4.92
618 657 2.159071 TCTCCGACGGAAAACTGACAAA 60.159 45.455 18.93 0.00 0.00 2.83
623 662 2.094700 TCTGATCTCCGACGGAAAACTG 60.095 50.000 18.93 14.27 0.00 3.16
643 704 7.960793 AGTAATCTTACATAACAAGTTGCGTC 58.039 34.615 1.81 0.00 36.12 5.19
678 757 8.962679 TCTGTTCACAAGTAACCTTACATTTTT 58.037 29.630 0.00 0.00 36.12 1.94
679 758 8.514330 TCTGTTCACAAGTAACCTTACATTTT 57.486 30.769 0.00 0.00 36.12 1.82
680 759 7.773690 ACTCTGTTCACAAGTAACCTTACATTT 59.226 33.333 0.00 0.00 36.12 2.32
681 760 7.280356 ACTCTGTTCACAAGTAACCTTACATT 58.720 34.615 0.00 0.00 36.12 2.71
682 761 6.827727 ACTCTGTTCACAAGTAACCTTACAT 58.172 36.000 0.00 0.00 36.12 2.29
683 762 6.229936 ACTCTGTTCACAAGTAACCTTACA 57.770 37.500 0.00 0.00 36.12 2.41
684 763 6.018180 CCAACTCTGTTCACAAGTAACCTTAC 60.018 42.308 0.00 0.00 0.00 2.34
685 764 6.053005 CCAACTCTGTTCACAAGTAACCTTA 58.947 40.000 0.00 0.00 0.00 2.69
686 765 4.881850 CCAACTCTGTTCACAAGTAACCTT 59.118 41.667 0.00 0.00 0.00 3.50
687 766 4.451900 CCAACTCTGTTCACAAGTAACCT 58.548 43.478 0.00 0.00 0.00 3.50
688 767 3.564225 CCCAACTCTGTTCACAAGTAACC 59.436 47.826 0.00 0.00 0.00 2.85
689 768 4.196971 ACCCAACTCTGTTCACAAGTAAC 58.803 43.478 0.00 0.00 0.00 2.50
690 769 4.497291 ACCCAACTCTGTTCACAAGTAA 57.503 40.909 0.00 0.00 0.00 2.24
691 770 4.497291 AACCCAACTCTGTTCACAAGTA 57.503 40.909 0.00 0.00 0.00 2.24
692 771 3.366052 AACCCAACTCTGTTCACAAGT 57.634 42.857 0.00 0.00 0.00 3.16
693 772 4.216257 CCATAACCCAACTCTGTTCACAAG 59.784 45.833 0.00 0.00 0.00 3.16
703 782 3.260884 TCAGACAGTCCATAACCCAACTC 59.739 47.826 0.00 0.00 0.00 3.01
705 784 3.008049 AGTCAGACAGTCCATAACCCAAC 59.992 47.826 2.66 0.00 0.00 3.77
707 786 2.567169 CAGTCAGACAGTCCATAACCCA 59.433 50.000 2.66 0.00 0.00 4.51
725 804 5.698741 TCACATATTCTTCCATGGTCAGT 57.301 39.130 12.58 0.00 0.00 3.41
730 809 7.069085 ACAGGAATTTCACATATTCTTCCATGG 59.931 37.037 4.97 4.97 35.65 3.66
733 812 6.947733 ACACAGGAATTTCACATATTCTTCCA 59.052 34.615 0.00 0.00 35.65 3.53
737 816 7.336931 GGTACACACAGGAATTTCACATATTCT 59.663 37.037 0.00 0.00 33.51 2.40
775 878 4.786425 ACAGAGTTTTCTTTTCTGGAGCT 58.214 39.130 5.79 0.00 41.98 4.09
776 879 5.506686 AACAGAGTTTTCTTTTCTGGAGC 57.493 39.130 5.79 0.00 41.98 4.70
778 881 5.065988 CGGAAACAGAGTTTTCTTTTCTGGA 59.934 40.000 5.79 0.00 41.98 3.86
779 882 5.273944 CGGAAACAGAGTTTTCTTTTCTGG 58.726 41.667 5.79 0.00 41.98 3.86
781 884 4.495844 CGCGGAAACAGAGTTTTCTTTTCT 60.496 41.667 0.00 0.00 36.02 2.52
784 887 2.032924 CCGCGGAAACAGAGTTTTCTTT 59.967 45.455 24.07 0.00 36.02 2.52
785 888 1.602377 CCGCGGAAACAGAGTTTTCTT 59.398 47.619 24.07 0.00 36.02 2.52
786 889 1.202604 TCCGCGGAAACAGAGTTTTCT 60.203 47.619 28.99 0.00 36.02 2.52
787 890 1.223187 TCCGCGGAAACAGAGTTTTC 58.777 50.000 28.99 0.00 35.13 2.29
788 891 1.670791 TTCCGCGGAAACAGAGTTTT 58.329 45.000 37.13 0.00 0.00 2.43
789 892 1.670791 TTTCCGCGGAAACAGAGTTT 58.329 45.000 41.63 0.00 38.95 2.66
801 904 1.982913 GCCACAATTACTTTTTCCGCG 59.017 47.619 0.00 0.00 0.00 6.46
852 980 5.316770 CAAACCTTATCTTTCTCGCTTTCG 58.683 41.667 0.00 0.00 0.00 3.46
904 1033 2.203195 GTGCCCACTGTGTGCAGA 60.203 61.111 18.11 0.00 45.28 4.26
944 1073 4.116585 AGAGAGGGCTCGAGCGGA 62.117 66.667 29.81 0.00 45.98 5.54
946 1075 2.826287 TCAGAGAGGGCTCGAGCG 60.826 66.667 29.81 14.98 45.98 5.03
947 1076 2.781158 GGTCAGAGAGGGCTCGAGC 61.781 68.421 29.38 29.38 45.98 5.03
948 1077 0.181587 TAGGTCAGAGAGGGCTCGAG 59.818 60.000 8.45 8.45 45.98 4.04
949 1078 0.107116 GTAGGTCAGAGAGGGCTCGA 60.107 60.000 0.00 0.00 45.98 4.04
950 1079 0.106918 AGTAGGTCAGAGAGGGCTCG 60.107 60.000 0.00 0.00 45.98 5.03
951 1080 2.028876 GAAGTAGGTCAGAGAGGGCTC 58.971 57.143 0.00 0.00 41.62 4.70
952 1081 1.683629 CGAAGTAGGTCAGAGAGGGCT 60.684 57.143 0.00 0.00 0.00 5.19
953 1082 0.741915 CGAAGTAGGTCAGAGAGGGC 59.258 60.000 0.00 0.00 0.00 5.19
961 1090 4.124351 CGCCGGCGAAGTAGGTCA 62.124 66.667 44.86 0.00 42.83 4.02
1164 1293 6.459670 TTATCTACAGGTAGCGAATTCACA 57.540 37.500 6.22 0.00 33.32 3.58
1168 1297 7.985184 TGTTTGATTATCTACAGGTAGCGAATT 59.015 33.333 1.54 0.00 33.32 2.17
1176 1305 5.339008 TCGCTGTTTGATTATCTACAGGT 57.661 39.130 20.68 0.00 38.68 4.00
1257 1400 6.561614 AGCAATGCAAACATCAGAGAAATAG 58.438 36.000 8.35 0.00 34.62 1.73
1258 1401 6.519679 AGCAATGCAAACATCAGAGAAATA 57.480 33.333 8.35 0.00 34.62 1.40
1259 1402 5.401531 AGCAATGCAAACATCAGAGAAAT 57.598 34.783 8.35 0.00 34.62 2.17
1262 1405 4.552355 CAAAGCAATGCAAACATCAGAGA 58.448 39.130 8.35 0.00 34.62 3.10
1274 1417 4.477302 AACATTTGAAGCAAAGCAATGC 57.523 36.364 0.00 0.00 46.78 3.56
1294 1437 3.376859 CAGCAGTGTGTCACCAAACTAAA 59.623 43.478 0.00 0.00 37.01 1.85
1338 1481 0.317938 GCGTATCGTGACAGGCCTAG 60.318 60.000 3.98 2.19 0.00 3.02
1346 1489 1.650536 CTCGTCGGCGTATCGTGAC 60.651 63.158 10.18 0.00 39.49 3.67
1352 1495 2.185494 GGACTCCTCGTCGGCGTAT 61.185 63.158 10.18 0.00 43.79 3.06
1400 1543 2.426522 GTCCAGTACTGCAAATCAGCA 58.573 47.619 17.86 0.00 46.76 4.41
1448 1591 4.030216 TCCACTATGAAGCACACCTGATA 58.970 43.478 0.00 0.00 0.00 2.15
1462 1605 9.881649 ATATGTATGACTGCTTATTCCACTATG 57.118 33.333 0.00 0.00 0.00 2.23
1473 1617 7.219322 TGTTGAGCATATATGTATGACTGCTT 58.781 34.615 13.18 0.00 39.86 3.91
1475 1619 7.606858 ATGTTGAGCATATATGTATGACTGC 57.393 36.000 13.18 0.00 40.12 4.40
1508 1653 9.587772 TTAGTAGCTGATTTTTACAAGCTAGAG 57.412 33.333 0.00 0.00 35.85 2.43
1522 1669 7.411486 ACACACTAGACATTAGTAGCTGATT 57.589 36.000 0.00 0.00 0.00 2.57
1523 1670 7.122799 TGAACACACTAGACATTAGTAGCTGAT 59.877 37.037 0.00 0.00 0.00 2.90
1538 1685 7.369803 AGCAATGAGTAAATGAACACACTAG 57.630 36.000 0.00 0.00 0.00 2.57
1539 1686 9.098355 GATAGCAATGAGTAAATGAACACACTA 57.902 33.333 0.00 0.00 0.00 2.74
1699 1846 2.026262 ACATGATAAACCGCCAAGACCT 60.026 45.455 0.00 0.00 0.00 3.85
1714 1861 6.260936 CCACCGCTTCTAGAAATAAACATGAT 59.739 38.462 6.63 0.00 0.00 2.45
1717 1864 5.354234 CACCACCGCTTCTAGAAATAAACAT 59.646 40.000 6.63 0.00 0.00 2.71
1740 1887 2.524569 TGTCTCAGCACAATCGAACA 57.475 45.000 0.00 0.00 0.00 3.18
1799 1979 5.605534 CGGTTCATCACTATGATCCTTCTT 58.394 41.667 11.68 0.00 44.71 2.52
1883 2063 8.034215 TGGCCATTTGAGTAAATAACTTTGATG 58.966 33.333 0.00 0.00 39.07 3.07
1948 2128 3.134623 CAGCATATACCTGACCAGTTGGA 59.865 47.826 4.92 0.00 38.94 3.53
2002 2182 0.822944 TCGTACCCTGACCACGAACA 60.823 55.000 0.00 0.00 41.34 3.18
2244 7482 3.931907 ACTGCAGCCTATATGAAACCA 57.068 42.857 15.27 0.00 0.00 3.67
2272 7510 7.823745 ATGACTTTACACAAGTCTTCCAAAT 57.176 32.000 14.24 0.00 45.13 2.32
2325 7563 0.107263 TGCCTTCACACAAGTCTGCA 60.107 50.000 0.00 0.00 0.00 4.41
2338 7576 9.091784 GAAAAAGGATCAAGAAATATTGCCTTC 57.908 33.333 0.00 0.00 33.88 3.46
2370 7609 6.692486 ACCGTCATTATCTGGATGATTACTC 58.308 40.000 0.00 0.00 36.07 2.59
2393 7633 9.612620 CAGAAACAATGAATAAGGTAAACAGAC 57.387 33.333 0.00 0.00 0.00 3.51
2437 7685 4.250464 CAACAATACCAGCTCGAACCTTA 58.750 43.478 0.00 0.00 0.00 2.69
2945 8219 9.253832 TGATGGAATGGTATGTAGAAAATGTTT 57.746 29.630 0.00 0.00 0.00 2.83
3054 8328 1.539341 CGCAGTCACTGTCTACATCG 58.461 55.000 6.68 0.00 33.43 3.84
3075 8349 7.811653 TGCAGTTGATCGAAACATACAATTTA 58.188 30.769 3.01 0.00 32.21 1.40
3115 8389 5.801947 CGGCTCAACTCCAAAAATTCTAATG 59.198 40.000 0.00 0.00 0.00 1.90
3123 8397 2.552315 GACATCGGCTCAACTCCAAAAA 59.448 45.455 0.00 0.00 0.00 1.94
3219 8493 1.265365 GATAAGATGCGGAAAGCTGCC 59.735 52.381 0.00 0.00 46.06 4.85
3321 8595 4.341099 GTGCGTACTACAGTGAGTATGAC 58.659 47.826 18.42 12.83 40.12 3.06
3332 8606 2.030981 TGTGATTGACGTGCGTACTACA 60.031 45.455 0.00 0.00 0.00 2.74
3336 8610 2.156891 ACATTGTGATTGACGTGCGTAC 59.843 45.455 0.00 0.00 0.00 3.67
3337 8611 2.409012 ACATTGTGATTGACGTGCGTA 58.591 42.857 0.00 0.00 0.00 4.42
3368 8642 5.429762 TCCAGAGAAATTGTCCTATGATGGT 59.570 40.000 0.00 0.00 0.00 3.55
3426 8706 3.838317 GTGATGTAGGGATATAGCCACCA 59.162 47.826 9.69 2.22 0.00 4.17
3493 8774 1.573376 AGATCAGCTCAGACCCCTAGT 59.427 52.381 0.00 0.00 0.00 2.57
3569 8859 6.074648 TGAAACCAAGTTCCACTTATCCATT 58.925 36.000 0.00 0.00 36.03 3.16
3578 8868 4.633565 TGCAAAATTGAAACCAAGTTCCAC 59.366 37.500 0.00 0.00 31.58 4.02
3591 8881 6.618166 GCGAGCATTTAATTGTGCAAAATTGA 60.618 34.615 22.67 13.35 43.63 2.57
3656 8946 1.138859 TGTGGATGTAAGGCCGATCAG 59.861 52.381 0.00 0.00 0.00 2.90
3881 9184 2.995574 ACCCGTCCGAGGTGAAGG 60.996 66.667 0.08 0.00 35.85 3.46
3904 9207 2.961741 TGGCAAGGATGTAAAAAGTGCA 59.038 40.909 0.00 0.00 32.18 4.57
3946 9270 5.721960 ACCTGGATACTGTGTAGTCATCTTT 59.278 40.000 0.00 0.00 38.36 2.52
3979 9303 6.260936 TCAGTCAGGAATCAACTGAAAGAAAC 59.739 38.462 9.06 0.00 45.66 2.78
4181 9505 3.659444 GCAAAAGTCAAGAATTCGACACG 59.341 43.478 13.74 0.00 34.48 4.49
4241 9565 2.905085 ACCAGAGGATCAGGATATGCTG 59.095 50.000 17.55 17.55 46.05 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.