Multiple sequence alignment - TraesCS1B01G279600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G279600 | chr1B | 100.000 | 9002 | 0 | 0 | 1 | 9002 | 488207308 | 488216309 | 0.000000e+00 | 16624.0 |
1 | TraesCS1B01G279600 | chr1D | 94.061 | 3553 | 121 | 33 | 2142 | 5637 | 364764136 | 364767655 | 0.000000e+00 | 5310.0 |
2 | TraesCS1B01G279600 | chr1D | 95.555 | 2137 | 71 | 6 | 6884 | 8997 | 364769043 | 364771178 | 0.000000e+00 | 3398.0 |
3 | TraesCS1B01G279600 | chr1D | 91.302 | 1851 | 96 | 23 | 303 | 2146 | 364762307 | 364764099 | 0.000000e+00 | 2466.0 |
4 | TraesCS1B01G279600 | chr1D | 94.072 | 1282 | 40 | 8 | 5636 | 6885 | 364767684 | 364768961 | 0.000000e+00 | 1914.0 |
5 | TraesCS1B01G279600 | chr1D | 89.103 | 312 | 30 | 3 | 1 | 311 | 364761912 | 364762220 | 1.420000e-102 | 385.0 |
6 | TraesCS1B01G279600 | chr1A | 94.183 | 2166 | 65 | 14 | 6887 | 9002 | 463826044 | 463828198 | 0.000000e+00 | 3245.0 |
7 | TraesCS1B01G279600 | chr1A | 94.795 | 1902 | 72 | 10 | 1738 | 3615 | 463821475 | 463823373 | 0.000000e+00 | 2939.0 |
8 | TraesCS1B01G279600 | chr1A | 91.650 | 2012 | 90 | 36 | 4197 | 6165 | 463824073 | 463826049 | 0.000000e+00 | 2713.0 |
9 | TraesCS1B01G279600 | chr1A | 90.375 | 1413 | 79 | 22 | 303 | 1676 | 463820083 | 463821477 | 0.000000e+00 | 1803.0 |
10 | TraesCS1B01G279600 | chr1A | 93.761 | 545 | 21 | 7 | 3659 | 4203 | 463823385 | 463823916 | 0.000000e+00 | 806.0 |
11 | TraesCS1B01G279600 | chr3B | 74.720 | 803 | 164 | 28 | 7177 | 7964 | 652909897 | 652909119 | 1.130000e-83 | 322.0 |
12 | TraesCS1B01G279600 | chr3A | 75.994 | 654 | 127 | 19 | 7320 | 7964 | 633848536 | 633847904 | 2.440000e-80 | 311.0 |
13 | TraesCS1B01G279600 | chr3A | 88.793 | 116 | 10 | 3 | 5475 | 5590 | 630924423 | 630924311 | 1.220000e-28 | 139.0 |
14 | TraesCS1B01G279600 | chr3D | 76.070 | 631 | 125 | 17 | 7339 | 7964 | 491958820 | 491958211 | 1.140000e-78 | 305.0 |
15 | TraesCS1B01G279600 | chr5A | 81.443 | 291 | 49 | 4 | 5 | 291 | 169969751 | 169969462 | 5.430000e-57 | 233.0 |
16 | TraesCS1B01G279600 | chr5D | 86.550 | 171 | 20 | 3 | 4 | 172 | 135091594 | 135091763 | 1.540000e-42 | 185.0 |
17 | TraesCS1B01G279600 | chr7A | 92.920 | 113 | 7 | 1 | 5472 | 5584 | 305708933 | 305708822 | 7.230000e-36 | 163.0 |
18 | TraesCS1B01G279600 | chr7A | 91.150 | 113 | 9 | 1 | 5472 | 5584 | 296604237 | 296604348 | 1.570000e-32 | 152.0 |
19 | TraesCS1B01G279600 | chr7A | 90.265 | 113 | 10 | 1 | 5472 | 5584 | 299568613 | 299568502 | 7.280000e-31 | 147.0 |
20 | TraesCS1B01G279600 | chr7B | 90.000 | 110 | 10 | 1 | 5474 | 5583 | 570465365 | 570465257 | 3.390000e-29 | 141.0 |
21 | TraesCS1B01G279600 | chr7B | 78.947 | 114 | 17 | 4 | 121 | 230 | 87010835 | 87010945 | 4.510000e-08 | 71.3 |
22 | TraesCS1B01G279600 | chr6B | 91.346 | 104 | 8 | 1 | 5482 | 5585 | 617173719 | 617173821 | 3.390000e-29 | 141.0 |
23 | TraesCS1B01G279600 | chr6A | 89.381 | 113 | 11 | 1 | 5472 | 5584 | 58306515 | 58306626 | 3.390000e-29 | 141.0 |
24 | TraesCS1B01G279600 | chr7D | 89.091 | 110 | 11 | 1 | 5475 | 5584 | 397578521 | 397578629 | 1.580000e-27 | 135.0 |
25 | TraesCS1B01G279600 | chr4D | 86.207 | 58 | 5 | 3 | 146 | 201 | 509059308 | 509059364 | 9.760000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G279600 | chr1B | 488207308 | 488216309 | 9001 | False | 16624.0 | 16624 | 100.0000 | 1 | 9002 | 1 | chr1B.!!$F1 | 9001 |
1 | TraesCS1B01G279600 | chr1D | 364761912 | 364771178 | 9266 | False | 2694.6 | 5310 | 92.8186 | 1 | 8997 | 5 | chr1D.!!$F1 | 8996 |
2 | TraesCS1B01G279600 | chr1A | 463820083 | 463828198 | 8115 | False | 2301.2 | 3245 | 92.9528 | 303 | 9002 | 5 | chr1A.!!$F1 | 8699 |
3 | TraesCS1B01G279600 | chr3B | 652909119 | 652909897 | 778 | True | 322.0 | 322 | 74.7200 | 7177 | 7964 | 1 | chr3B.!!$R1 | 787 |
4 | TraesCS1B01G279600 | chr3A | 633847904 | 633848536 | 632 | True | 311.0 | 311 | 75.9940 | 7320 | 7964 | 1 | chr3A.!!$R2 | 644 |
5 | TraesCS1B01G279600 | chr3D | 491958211 | 491958820 | 609 | True | 305.0 | 305 | 76.0700 | 7339 | 7964 | 1 | chr3D.!!$R1 | 625 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
664 | 783 | 0.168128 | GACAAGAAATTGGGCGTCCG | 59.832 | 55.000 | 0.00 | 0.00 | 35.24 | 4.79 | F |
1158 | 1319 | 0.108424 | CGAAGAGGGTGGAAGAGCAG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 | F |
1159 | 1320 | 0.392327 | GAAGAGGGTGGAAGAGCAGC | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 5.25 | F |
1380 | 1541 | 1.069500 | GTGCCGCATTTCGTTAACTGT | 60.069 | 47.619 | 3.71 | 0.00 | 36.19 | 3.55 | F |
2364 | 2568 | 1.134670 | GGTAGAGCTAGCACTGTTGGG | 60.135 | 57.143 | 23.03 | 0.00 | 34.00 | 4.12 | F |
2412 | 2616 | 1.628340 | ACACTTGGTAGTAGCATGGCA | 59.372 | 47.619 | 16.78 | 0.00 | 31.96 | 4.92 | F |
3233 | 3443 | 2.807108 | GCGTCAGAAAGAACTTCCCAGT | 60.807 | 50.000 | 0.00 | 0.00 | 34.21 | 4.00 | F |
4287 | 4711 | 2.230992 | TCAATGATTTGTGGGCTTTCCG | 59.769 | 45.455 | 0.00 | 0.00 | 38.76 | 4.30 | F |
4822 | 5246 | 1.538950 | CAGGAAGTGAAGAGCCAAAGC | 59.461 | 52.381 | 0.00 | 0.00 | 40.32 | 3.51 | F |
5322 | 5748 | 1.606601 | GGGGTTGGTTCTCTTGCCC | 60.607 | 63.158 | 0.00 | 0.00 | 35.52 | 5.36 | F |
5594 | 6034 | 2.224402 | GGAGGGAGTATGTTCCATGCTC | 60.224 | 54.545 | 12.22 | 12.22 | 36.57 | 4.26 | F |
6731 | 7212 | 0.543277 | CCATAAGGCCTGCAGACTGA | 59.457 | 55.000 | 17.39 | 6.59 | 0.00 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1672 | 1835 | 0.035152 | TGTACATGCTTCAGCCCCAG | 60.035 | 55.000 | 0.00 | 0.0 | 41.18 | 4.45 | R |
3090 | 3300 | 0.546122 | TCCAAGTTGTGCCACTGAGT | 59.454 | 50.000 | 1.45 | 0.0 | 0.00 | 3.41 | R |
3233 | 3443 | 3.130633 | CGGCATCTCGTTTCATGGAATA | 58.869 | 45.455 | 0.00 | 0.0 | 0.00 | 1.75 | R |
3239 | 3449 | 1.471676 | GGTCTCGGCATCTCGTTTCAT | 60.472 | 52.381 | 0.00 | 0.0 | 0.00 | 2.57 | R |
3449 | 3659 | 1.541588 | GACAACTGAAATGGCCCAGAC | 59.458 | 52.381 | 13.03 | 0.0 | 34.65 | 3.51 | R |
3639 | 3867 | 3.441572 | AGTACTGAAATCATGCAGCCAAC | 59.558 | 43.478 | 0.00 | 0.0 | 35.57 | 3.77 | R |
4602 | 5026 | 1.149101 | AAGCAACCAAGAGAAGGGGA | 58.851 | 50.000 | 0.00 | 0.0 | 0.00 | 4.81 | R |
5686 | 6156 | 0.388778 | TCATGCATGCACAAAAGCCG | 60.389 | 50.000 | 25.37 | 4.3 | 0.00 | 5.52 | R |
6266 | 6738 | 0.671251 | TTGGGTCCGCAATCAACAAC | 59.329 | 50.000 | 0.00 | 0.0 | 0.00 | 3.32 | R |
6343 | 6815 | 1.230324 | GGTGTCAAGTGTTGAGAGGC | 58.770 | 55.000 | 0.00 | 0.0 | 41.01 | 4.70 | R |
7071 | 7656 | 1.418373 | TCGCGATTCACAACTGTCTG | 58.582 | 50.000 | 3.71 | 0.0 | 0.00 | 3.51 | R |
8699 | 9341 | 0.032017 | TTGCCCTAGAGAGACCTCCC | 60.032 | 60.000 | 0.00 | 0.0 | 40.30 | 4.30 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.763319 | ACGGATTCTCGAAACGCG | 58.237 | 55.556 | 3.53 | 3.53 | 42.69 | 6.01 |
18 | 19 | 1.804326 | ACGGATTCTCGAAACGCGG | 60.804 | 57.895 | 12.47 | 0.00 | 41.33 | 6.46 |
35 | 36 | 2.350498 | CGCGGTTAGGAAAATCAACGAT | 59.650 | 45.455 | 0.00 | 0.00 | 0.00 | 3.73 |
69 | 70 | 2.439409 | TGTCTGTTCATGGGCATCTTG | 58.561 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
72 | 73 | 3.084039 | TCTGTTCATGGGCATCTTGTTC | 58.916 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
83 | 84 | 3.350833 | GCATCTTGTTCAGGAGGTGAAT | 58.649 | 45.455 | 0.00 | 0.00 | 46.99 | 2.57 |
85 | 86 | 4.330250 | CATCTTGTTCAGGAGGTGAATGT | 58.670 | 43.478 | 0.00 | 0.00 | 46.99 | 2.71 |
86 | 87 | 5.491070 | CATCTTGTTCAGGAGGTGAATGTA | 58.509 | 41.667 | 0.00 | 0.00 | 46.99 | 2.29 |
89 | 90 | 7.252612 | TCTTGTTCAGGAGGTGAATGTATTA | 57.747 | 36.000 | 0.00 | 0.00 | 46.99 | 0.98 |
91 | 92 | 5.741011 | TGTTCAGGAGGTGAATGTATTACC | 58.259 | 41.667 | 0.00 | 0.00 | 46.99 | 2.85 |
130 | 131 | 1.874345 | AAGGTAGTCTGGGTGCGACG | 61.874 | 60.000 | 0.00 | 0.00 | 36.53 | 5.12 |
159 | 160 | 1.060713 | CAAAGTCGCACACGTCCTAG | 58.939 | 55.000 | 0.00 | 0.00 | 41.18 | 3.02 |
204 | 205 | 1.320507 | TGTAAAACTTGGTTCCGGGC | 58.679 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
229 | 230 | 2.094906 | TCCGACATGTGTTAGTTCGGAG | 60.095 | 50.000 | 16.08 | 0.00 | 42.32 | 4.63 |
271 | 272 | 5.914635 | CGTGACTGTTGAATAAAACTGCAAT | 59.085 | 36.000 | 0.00 | 0.00 | 33.62 | 3.56 |
282 | 283 | 9.638239 | TGAATAAAACTGCAATAATTTCCACTC | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
286 | 287 | 7.951530 | AAACTGCAATAATTTCCACTCAAAG | 57.048 | 32.000 | 0.00 | 0.00 | 0.00 | 2.77 |
293 | 294 | 8.919661 | GCAATAATTTCCACTCAAAGAAAGAAG | 58.080 | 33.333 | 0.00 | 0.00 | 35.57 | 2.85 |
298 | 299 | 6.927294 | TTCCACTCAAAGAAAGAAGAAGAC | 57.073 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
299 | 300 | 5.368989 | TCCACTCAAAGAAAGAAGAAGACC | 58.631 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
300 | 301 | 5.131142 | TCCACTCAAAGAAAGAAGAAGACCT | 59.869 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
301 | 302 | 5.238214 | CCACTCAAAGAAAGAAGAAGACCTG | 59.762 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
466 | 560 | 1.684049 | CGAAGCTCCTCTCCCCTGT | 60.684 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
467 | 561 | 1.261238 | CGAAGCTCCTCTCCCCTGTT | 61.261 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
468 | 562 | 0.539518 | GAAGCTCCTCTCCCCTGTTC | 59.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
469 | 563 | 1.261238 | AAGCTCCTCTCCCCTGTTCG | 61.261 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
470 | 564 | 2.726351 | GCTCCTCTCCCCTGTTCGG | 61.726 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
488 | 582 | 3.382832 | CTGTTCCCCGTCTCCGCT | 61.383 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
490 | 584 | 3.069318 | GTTCCCCGTCTCCGCTCT | 61.069 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
517 | 611 | 2.104253 | CCCAAATCCGTCGAACCCG | 61.104 | 63.158 | 0.00 | 0.00 | 37.07 | 5.28 |
538 | 632 | 4.933064 | GCCCAGCGACGATCTCCG | 62.933 | 72.222 | 0.00 | 0.00 | 45.44 | 4.63 |
627 | 746 | 4.433615 | TCAGATTCCGCTTCAAGTATCAC | 58.566 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
661 | 780 | 2.296190 | GGAAAGACAAGAAATTGGGCGT | 59.704 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
662 | 781 | 3.565516 | GAAAGACAAGAAATTGGGCGTC | 58.434 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
663 | 782 | 1.534729 | AGACAAGAAATTGGGCGTCC | 58.465 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
664 | 783 | 0.168128 | GACAAGAAATTGGGCGTCCG | 59.832 | 55.000 | 0.00 | 0.00 | 35.24 | 4.79 |
665 | 784 | 0.536460 | ACAAGAAATTGGGCGTCCGT | 60.536 | 50.000 | 0.00 | 0.00 | 35.24 | 4.69 |
677 | 796 | 2.087009 | CGTCCGTCGTTTCTGAGCC | 61.087 | 63.158 | 0.00 | 0.00 | 34.52 | 4.70 |
680 | 799 | 2.733218 | CGTCGTTTCTGAGCCGCA | 60.733 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
786 | 934 | 2.915659 | TGAGCTGGTCCGGTTCGT | 60.916 | 61.111 | 9.75 | 0.00 | 0.00 | 3.85 |
791 | 939 | 2.203523 | TGGTCCGGTTCGTCCTGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
802 | 950 | 2.178912 | TCGTCCTGATTGGTTGGTTC | 57.821 | 50.000 | 0.00 | 0.00 | 37.07 | 3.62 |
840 | 991 | 0.545309 | TGAGTGGTTCCTGGAGGAGG | 60.545 | 60.000 | 0.00 | 0.00 | 46.36 | 4.30 |
853 | 1004 | 1.464198 | AGGAGGAGCTGTTTGGGGT | 60.464 | 57.895 | 0.00 | 0.00 | 0.00 | 4.95 |
896 | 1047 | 2.548904 | GGAGTCGCTAGATCGCTTTAGA | 59.451 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
907 | 1058 | 3.973206 | TCGCTTTAGATTTGTGGAGGA | 57.027 | 42.857 | 0.00 | 0.00 | 0.00 | 3.71 |
913 | 1064 | 6.093495 | CGCTTTAGATTTGTGGAGGATTACAA | 59.907 | 38.462 | 0.00 | 0.00 | 35.20 | 2.41 |
937 | 1088 | 8.726068 | CAAAATAATACGGTATCATGGTGCATA | 58.274 | 33.333 | 0.30 | 0.00 | 0.00 | 3.14 |
988 | 1143 | 3.338214 | TGGGGATCAGGGATTTTGGTTAA | 59.662 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
989 | 1144 | 3.704566 | GGGGATCAGGGATTTTGGTTAAC | 59.295 | 47.826 | 0.00 | 0.00 | 0.00 | 2.01 |
1020 | 1175 | 1.380302 | GGGAGGCCTCTGCTCAAAA | 59.620 | 57.895 | 31.36 | 0.00 | 37.74 | 2.44 |
1154 | 1315 | 2.646175 | CGGCGAAGAGGGTGGAAGA | 61.646 | 63.158 | 0.00 | 0.00 | 0.00 | 2.87 |
1155 | 1316 | 1.219393 | GGCGAAGAGGGTGGAAGAG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
1156 | 1317 | 1.448717 | GCGAAGAGGGTGGAAGAGC | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 4.09 |
1157 | 1318 | 1.975327 | CGAAGAGGGTGGAAGAGCA | 59.025 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
1158 | 1319 | 0.108424 | CGAAGAGGGTGGAAGAGCAG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1159 | 1320 | 0.392327 | GAAGAGGGTGGAAGAGCAGC | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 5.25 |
1160 | 1321 | 1.130054 | AAGAGGGTGGAAGAGCAGCA | 61.130 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1161 | 1322 | 1.078567 | GAGGGTGGAAGAGCAGCAG | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 4.24 |
1162 | 1323 | 2.749441 | GGGTGGAAGAGCAGCAGC | 60.749 | 66.667 | 0.00 | 0.00 | 42.56 | 5.25 |
1163 | 1324 | 2.033141 | GGTGGAAGAGCAGCAGCA | 59.967 | 61.111 | 3.17 | 0.00 | 45.49 | 4.41 |
1164 | 1325 | 2.039405 | GGTGGAAGAGCAGCAGCAG | 61.039 | 63.158 | 3.17 | 0.00 | 45.49 | 4.24 |
1165 | 1326 | 2.359602 | TGGAAGAGCAGCAGCAGC | 60.360 | 61.111 | 3.17 | 0.46 | 45.49 | 5.25 |
1283 | 1444 | 1.495584 | GCTCGGACACTGTCGCAAAA | 61.496 | 55.000 | 3.04 | 0.00 | 32.65 | 2.44 |
1380 | 1541 | 1.069500 | GTGCCGCATTTCGTTAACTGT | 60.069 | 47.619 | 3.71 | 0.00 | 36.19 | 3.55 |
1422 | 1583 | 5.126707 | TCTCCGGTCCTTAGTTTGTTAGATC | 59.873 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1426 | 1587 | 6.460676 | CCGGTCCTTAGTTTGTTAGATCGTAT | 60.461 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
1659 | 1822 | 2.797156 | GTGAGCGCATTGTATCGAATCT | 59.203 | 45.455 | 11.47 | 0.00 | 0.00 | 2.40 |
1669 | 1832 | 7.167635 | CGCATTGTATCGAATCTAACTGTAGTT | 59.832 | 37.037 | 2.51 | 2.51 | 41.73 | 2.24 |
1672 | 1835 | 6.270815 | TGTATCGAATCTAACTGTAGTTGGC | 58.729 | 40.000 | 7.50 | 0.00 | 38.90 | 4.52 |
1760 | 1923 | 6.261826 | CCTGGATATTTTCTGATCTTTTCGCT | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 4.93 |
1764 | 1927 | 8.778358 | GGATATTTTCTGATCTTTTCGCTGTAT | 58.222 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1820 | 1983 | 5.997385 | AGTTATAACTTCCAAGCAAACACG | 58.003 | 37.500 | 12.50 | 0.00 | 35.21 | 4.49 |
1841 | 2004 | 6.910972 | ACACGTCAATGAGTATATAACACTCG | 59.089 | 38.462 | 11.28 | 4.21 | 44.44 | 4.18 |
1853 | 2016 | 1.601166 | AACACTCGCCCCTGTTTAAC | 58.399 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1859 | 2022 | 1.156736 | CGCCCCTGTTTAACAGTCTG | 58.843 | 55.000 | 21.63 | 11.58 | 44.50 | 3.51 |
1873 | 2036 | 3.937814 | ACAGTCTGGATTAACAATCGCA | 58.062 | 40.909 | 4.53 | 0.00 | 38.82 | 5.10 |
1877 | 2040 | 5.580691 | CAGTCTGGATTAACAATCGCAAGTA | 59.419 | 40.000 | 0.00 | 0.00 | 38.82 | 2.24 |
1895 | 2058 | 7.274904 | TCGCAAGTAGTTTTCAGTGATATGTAC | 59.725 | 37.037 | 0.00 | 0.00 | 39.48 | 2.90 |
1900 | 2063 | 8.251721 | AGTAGTTTTCAGTGATATGTACTGGTC | 58.748 | 37.037 | 13.80 | 5.64 | 44.33 | 4.02 |
1903 | 2066 | 6.605471 | TTTCAGTGATATGTACTGGTCAGT | 57.395 | 37.500 | 13.80 | 8.74 | 44.33 | 3.41 |
2049 | 2212 | 2.694397 | TCCTGGCTATCCTATGCAAGT | 58.306 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2242 | 2446 | 6.322491 | GTGTACACTTGTCTTTGCTCTTTTT | 58.678 | 36.000 | 18.92 | 0.00 | 0.00 | 1.94 |
2245 | 2449 | 5.402398 | ACACTTGTCTTTGCTCTTTTTGAC | 58.598 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2364 | 2568 | 1.134670 | GGTAGAGCTAGCACTGTTGGG | 60.135 | 57.143 | 23.03 | 0.00 | 34.00 | 4.12 |
2412 | 2616 | 1.628340 | ACACTTGGTAGTAGCATGGCA | 59.372 | 47.619 | 16.78 | 0.00 | 31.96 | 4.92 |
2634 | 2838 | 3.338249 | TGAACTACTTGAGATTGCAGCC | 58.662 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2779 | 2983 | 8.526978 | TGCAGTTAATATTTCAATACTTTGCCA | 58.473 | 29.630 | 0.00 | 0.00 | 32.61 | 4.92 |
2797 | 3001 | 4.148838 | TGCCAGTACTTTAATGCTTTGGT | 58.851 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
2844 | 3048 | 5.801720 | TTTATAGGGGGATGCATGATGAT | 57.198 | 39.130 | 2.46 | 0.00 | 0.00 | 2.45 |
2888 | 3093 | 6.166982 | AGATTTAGTGCTACCTTTGTCTGTC | 58.833 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2895 | 3100 | 3.119245 | GCTACCTTTGTCTGTCCGTATGA | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 2.15 |
2918 | 3123 | 8.371571 | TGATAGGCTGATGACAGATATAACAT | 57.628 | 34.615 | 0.00 | 0.00 | 46.03 | 2.71 |
2968 | 3173 | 7.201794 | CCCAGTAGAACTGTATTCACTATTCGA | 60.202 | 40.741 | 6.33 | 0.00 | 44.50 | 3.71 |
3233 | 3443 | 2.807108 | GCGTCAGAAAGAACTTCCCAGT | 60.807 | 50.000 | 0.00 | 0.00 | 34.21 | 4.00 |
3239 | 3449 | 5.309543 | TCAGAAAGAACTTCCCAGTATTCCA | 59.690 | 40.000 | 0.00 | 0.00 | 34.21 | 3.53 |
3538 | 3748 | 6.966021 | TGGATTTTTCTAGTAACTGTTGCAC | 58.034 | 36.000 | 11.16 | 0.00 | 0.00 | 4.57 |
3561 | 3786 | 2.813754 | TGCTCAAAGAACCATGTAGTGC | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
3565 | 3790 | 4.460263 | TCAAAGAACCATGTAGTGCACTT | 58.540 | 39.130 | 27.06 | 4.31 | 0.00 | 3.16 |
3576 | 3804 | 6.372659 | CCATGTAGTGCACTTCTAGTTTGAAT | 59.627 | 38.462 | 27.06 | 3.77 | 0.00 | 2.57 |
3781 | 4009 | 6.877611 | TTTTTCGGCTTTTTCTAGATGTCT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3869 | 4126 | 7.538334 | TGATTTCATGTTATTCACTTTGCTTCG | 59.462 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
4031 | 4288 | 5.126067 | TGTTTGATTTATCAGGCCTAGCTC | 58.874 | 41.667 | 3.98 | 0.00 | 38.19 | 4.09 |
4105 | 4363 | 7.408756 | AAGAAATAGAACATAAGCATTGCCA | 57.591 | 32.000 | 4.70 | 0.00 | 0.00 | 4.92 |
4160 | 4420 | 2.869897 | CAGTCTTCGACTAGGTTGCTC | 58.130 | 52.381 | 0.00 | 0.00 | 41.37 | 4.26 |
4239 | 4663 | 3.751175 | TGCCTTTCTTGTGTGCATAGTAC | 59.249 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
4241 | 4665 | 4.142816 | GCCTTTCTTGTGTGCATAGTACTG | 60.143 | 45.833 | 5.39 | 0.00 | 0.00 | 2.74 |
4287 | 4711 | 2.230992 | TCAATGATTTGTGGGCTTTCCG | 59.769 | 45.455 | 0.00 | 0.00 | 38.76 | 4.30 |
4385 | 4809 | 6.253727 | ACATAAGAATCGCGAGTTAAGTTCAG | 59.746 | 38.462 | 16.66 | 6.54 | 0.00 | 3.02 |
4447 | 4871 | 4.192317 | GGATGAGAAAATACGTTGGAGCT | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
4695 | 5119 | 6.529125 | GGTTTCATTTGTCAGTATGCATTCAG | 59.471 | 38.462 | 3.54 | 0.00 | 34.76 | 3.02 |
4767 | 5191 | 5.642063 | TGACGAGCTAAAGGAAAACTTATGG | 59.358 | 40.000 | 0.00 | 0.00 | 38.85 | 2.74 |
4779 | 5203 | 8.189119 | AGGAAAACTTATGGTTTATTTGCAGA | 57.811 | 30.769 | 0.00 | 0.00 | 46.18 | 4.26 |
4822 | 5246 | 1.538950 | CAGGAAGTGAAGAGCCAAAGC | 59.461 | 52.381 | 0.00 | 0.00 | 40.32 | 3.51 |
5116 | 5540 | 3.379372 | CCTTTGGTCATGCTGGTATTGAG | 59.621 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
5153 | 5577 | 7.042051 | GCTGTCTTACAAGAGTGAATGTTGTTA | 60.042 | 37.037 | 0.00 | 0.00 | 42.42 | 2.41 |
5225 | 5651 | 4.345854 | ACTTCCCCCGCATATGTTTTAAA | 58.654 | 39.130 | 4.29 | 0.00 | 0.00 | 1.52 |
5236 | 5662 | 8.057742 | CCGCATATGTTTTAAAAATGCATTCTC | 58.942 | 33.333 | 24.91 | 5.16 | 42.36 | 2.87 |
5322 | 5748 | 1.606601 | GGGGTTGGTTCTCTTGCCC | 60.607 | 63.158 | 0.00 | 0.00 | 35.52 | 5.36 |
5416 | 5842 | 3.953612 | CCTTAGCCATGCAAAGGTAATGA | 59.046 | 43.478 | 9.94 | 0.00 | 0.00 | 2.57 |
5451 | 5878 | 6.634805 | AGATCATGTCTGAACTTATTCACGT | 58.365 | 36.000 | 0.00 | 0.00 | 40.01 | 4.49 |
5484 | 5912 | 4.284178 | GGACAAGGTACATACTACCTCCA | 58.716 | 47.826 | 0.00 | 0.00 | 46.52 | 3.86 |
5500 | 5929 | 3.265995 | ACCTCCATCCGGAATTACTTGTT | 59.734 | 43.478 | 9.01 | 0.00 | 42.21 | 2.83 |
5517 | 5946 | 6.594788 | ACTTGTTGCAGAAATGGATGTATT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
5518 | 5947 | 6.996509 | ACTTGTTGCAGAAATGGATGTATTT | 58.003 | 32.000 | 0.00 | 0.00 | 33.19 | 1.40 |
5548 | 5988 | 9.978044 | ACGTATTTTTAGTTCTAGATACATCCC | 57.022 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
5572 | 6012 | 4.819105 | TCTGTGACAAGTAATTCGGGAT | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
5594 | 6034 | 2.224402 | GGAGGGAGTATGTTCCATGCTC | 60.224 | 54.545 | 12.22 | 12.22 | 36.57 | 4.26 |
5602 | 6042 | 7.147983 | GGGAGTATGTTCCATGCTCTAGTATAG | 60.148 | 44.444 | 17.77 | 0.00 | 39.09 | 1.31 |
5666 | 6136 | 3.424703 | ACTTGCTATGGAGTGTGCAATT | 58.575 | 40.909 | 0.00 | 0.00 | 43.17 | 2.32 |
5667 | 6137 | 3.828451 | ACTTGCTATGGAGTGTGCAATTT | 59.172 | 39.130 | 0.00 | 0.00 | 43.17 | 1.82 |
5724 | 6194 | 3.958018 | TGAACACACACTTTAACCCTGT | 58.042 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
5972 | 6444 | 7.766738 | TCAGATTGACACACTTGTAAGTTAACA | 59.233 | 33.333 | 8.61 | 0.00 | 37.08 | 2.41 |
6054 | 6526 | 7.423844 | TCTCTAATCCAAAGATGTCTGCTTA | 57.576 | 36.000 | 0.00 | 0.00 | 31.29 | 3.09 |
6177 | 6649 | 7.439056 | GGCACCCATTATCTTTTCATACATTTG | 59.561 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
6209 | 6681 | 9.969001 | TGAAGTTAAAATACTAAAGGGCACTAT | 57.031 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
6219 | 6691 | 2.938956 | AGGGCACTATGGCATTCTAC | 57.061 | 50.000 | 4.78 | 0.00 | 45.76 | 2.59 |
6245 | 6717 | 3.443052 | TGCACCATCATCTTTTTGGGAT | 58.557 | 40.909 | 0.00 | 0.00 | 34.72 | 3.85 |
6343 | 6815 | 2.896168 | ACCCGGTATTACAACATGACG | 58.104 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
6353 | 6825 | 1.202639 | ACAACATGACGCCTCTCAACA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
6403 | 6875 | 2.285743 | AAGACCCCTCTCCCCTGC | 60.286 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
6453 | 6925 | 1.484038 | AGGAGGTGAGCTAAGCTGAG | 58.516 | 55.000 | 7.75 | 0.00 | 39.88 | 3.35 |
6457 | 6929 | 0.898320 | GGTGAGCTAAGCTGAGTGGA | 59.102 | 55.000 | 0.00 | 0.00 | 39.88 | 4.02 |
6485 | 6957 | 2.963854 | CGTATGCTGCAGGCCTCG | 60.964 | 66.667 | 17.12 | 0.00 | 40.92 | 4.63 |
6496 | 6968 | 3.917760 | GGCCTCGCCGTGCTAGAT | 61.918 | 66.667 | 0.00 | 0.00 | 39.62 | 1.98 |
6505 | 6977 | 1.948138 | CGTGCTAGATGCTCAGCCG | 60.948 | 63.158 | 0.00 | 0.00 | 43.37 | 5.52 |
6548 | 7020 | 3.790089 | AAAACTAGTTCCTGTGGGGAG | 57.210 | 47.619 | 8.95 | 0.00 | 46.01 | 4.30 |
6572 | 7053 | 2.478134 | CAGTTCAACTTCCAAGAGCTCG | 59.522 | 50.000 | 8.37 | 0.00 | 0.00 | 5.03 |
6578 | 7059 | 1.001406 | ACTTCCAAGAGCTCGAACTGG | 59.999 | 52.381 | 8.37 | 13.55 | 0.00 | 4.00 |
6638 | 7119 | 4.428209 | CATGTACTGAGCCATCCGATATC | 58.572 | 47.826 | 0.00 | 0.00 | 0.00 | 1.63 |
6666 | 7147 | 4.500116 | GGAGGACGTCTGGCGAGC | 62.500 | 72.222 | 16.46 | 0.00 | 44.77 | 5.03 |
6731 | 7212 | 0.543277 | CCATAAGGCCTGCAGACTGA | 59.457 | 55.000 | 17.39 | 6.59 | 0.00 | 3.41 |
6857 | 7359 | 5.233225 | CAGCTCATATTCGTGTGGTGATAT | 58.767 | 41.667 | 2.99 | 0.00 | 41.19 | 1.63 |
7045 | 7630 | 1.555075 | GAAGAGGTATGCCACACTGGA | 59.445 | 52.381 | 1.54 | 0.00 | 40.96 | 3.86 |
7071 | 7656 | 4.738124 | TCATATTCGCTGCTACTATGAGC | 58.262 | 43.478 | 9.25 | 0.00 | 43.16 | 4.26 |
7116 | 7701 | 2.076100 | TGCTGTGGAATCGTGAATCAC | 58.924 | 47.619 | 2.75 | 2.75 | 0.00 | 3.06 |
7132 | 7717 | 4.098349 | TGAATCACAATTCCTTGCTATGGC | 59.902 | 41.667 | 0.00 | 0.00 | 40.57 | 4.40 |
7531 | 8123 | 2.158711 | ACCCGGATCGAGACACTGTATA | 60.159 | 50.000 | 0.73 | 0.00 | 0.00 | 1.47 |
7746 | 8338 | 2.905085 | ACCAGAGGATCAGGATATGCTG | 59.095 | 50.000 | 17.55 | 17.55 | 46.05 | 4.41 |
7806 | 8398 | 3.659444 | GCAAAAGTCAAGAATTCGACACG | 59.341 | 43.478 | 13.74 | 0.00 | 34.48 | 4.49 |
8008 | 8600 | 6.260936 | TCAGTCAGGAATCAACTGAAAGAAAC | 59.739 | 38.462 | 9.06 | 0.00 | 45.66 | 2.78 |
8041 | 8633 | 5.721960 | ACCTGGATACTGTGTAGTCATCTTT | 59.278 | 40.000 | 0.00 | 0.00 | 38.36 | 2.52 |
8081 | 8673 | 4.616835 | GCTCTGGCAAGGATGTAAAAAGTG | 60.617 | 45.833 | 0.00 | 0.00 | 38.54 | 3.16 |
8082 | 8674 | 3.255642 | TCTGGCAAGGATGTAAAAAGTGC | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
8083 | 8675 | 2.961741 | TGGCAAGGATGTAAAAAGTGCA | 59.038 | 40.909 | 0.00 | 0.00 | 32.18 | 4.57 |
8106 | 8719 | 2.995574 | ACCCGTCCGAGGTGAAGG | 60.996 | 66.667 | 0.08 | 0.00 | 35.85 | 3.46 |
8331 | 8957 | 1.138859 | TGTGGATGTAAGGCCGATCAG | 59.861 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
8396 | 9022 | 6.618166 | GCGAGCATTTAATTGTGCAAAATTGA | 60.618 | 34.615 | 22.67 | 13.35 | 43.63 | 2.57 |
8409 | 9035 | 4.633565 | TGCAAAATTGAAACCAAGTTCCAC | 59.366 | 37.500 | 0.00 | 0.00 | 31.58 | 4.02 |
8418 | 9044 | 6.074648 | TGAAACCAAGTTCCACTTATCCATT | 58.925 | 36.000 | 0.00 | 0.00 | 36.03 | 3.16 |
8494 | 9121 | 1.573376 | AGATCAGCTCAGACCCCTAGT | 59.427 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
8561 | 9197 | 3.838317 | GTGATGTAGGGATATAGCCACCA | 59.162 | 47.826 | 9.69 | 2.22 | 0.00 | 4.17 |
8619 | 9261 | 5.429762 | TCCAGAGAAATTGTCCTATGATGGT | 59.570 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
8650 | 9292 | 2.409012 | ACATTGTGATTGACGTGCGTA | 58.591 | 42.857 | 0.00 | 0.00 | 0.00 | 4.42 |
8651 | 9293 | 2.156891 | ACATTGTGATTGACGTGCGTAC | 59.843 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
8655 | 9297 | 2.030981 | TGTGATTGACGTGCGTACTACA | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
8666 | 9308 | 4.341099 | GTGCGTACTACAGTGAGTATGAC | 58.659 | 47.826 | 18.42 | 12.83 | 40.12 | 3.06 |
8768 | 9410 | 1.265365 | GATAAGATGCGGAAAGCTGCC | 59.735 | 52.381 | 0.00 | 0.00 | 46.06 | 4.85 |
8864 | 9506 | 2.552315 | GACATCGGCTCAACTCCAAAAA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
8872 | 9514 | 5.801947 | CGGCTCAACTCCAAAAATTCTAATG | 59.198 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
8912 | 9554 | 7.811653 | TGCAGTTGATCGAAACATACAATTTA | 58.188 | 30.769 | 3.01 | 0.00 | 32.21 | 1.40 |
8933 | 9575 | 1.539341 | CGCAGTCACTGTCTACATCG | 58.461 | 55.000 | 6.68 | 0.00 | 33.43 | 3.84 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 3.817148 | TGATTTTCCTAACCGCGTTTC | 57.183 | 42.857 | 4.92 | 0.00 | 0.00 | 2.78 |
13 | 14 | 1.461897 | CGTTGATTTTCCTAACCGCGT | 59.538 | 47.619 | 4.92 | 0.00 | 0.00 | 6.01 |
14 | 15 | 1.727880 | TCGTTGATTTTCCTAACCGCG | 59.272 | 47.619 | 0.00 | 0.00 | 0.00 | 6.46 |
17 | 18 | 6.192360 | CGATTCATCGTTGATTTTCCTAACC | 58.808 | 40.000 | 0.80 | 0.00 | 44.74 | 2.85 |
35 | 36 | 5.789521 | TGAACAGACAAACCTATCGATTCA | 58.210 | 37.500 | 1.71 | 0.00 | 0.00 | 2.57 |
42 | 43 | 3.245229 | TGCCCATGAACAGACAAACCTAT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
43 | 44 | 2.107378 | TGCCCATGAACAGACAAACCTA | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
46 | 47 | 2.821969 | AGATGCCCATGAACAGACAAAC | 59.178 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
50 | 51 | 2.440409 | ACAAGATGCCCATGAACAGAC | 58.560 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
54 | 55 | 2.165030 | CCTGAACAAGATGCCCATGAAC | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
69 | 70 | 4.809426 | CGGTAATACATTCACCTCCTGAAC | 59.191 | 45.833 | 0.00 | 0.00 | 41.87 | 3.18 |
72 | 73 | 4.665833 | TCGGTAATACATTCACCTCCTG | 57.334 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
130 | 131 | 2.851104 | CGACTTTGTTCGCCGACC | 59.149 | 61.111 | 0.00 | 0.00 | 31.03 | 4.79 |
159 | 160 | 4.765813 | TTATTGTACAACCCTCCCTAGC | 57.234 | 45.455 | 11.22 | 0.00 | 0.00 | 3.42 |
193 | 194 | 3.961414 | GGAGGTGCCCGGAACCAA | 61.961 | 66.667 | 23.47 | 0.00 | 40.40 | 3.67 |
204 | 205 | 2.743636 | ACTAACACATGTCGGAGGTG | 57.256 | 50.000 | 0.00 | 0.00 | 42.30 | 4.00 |
212 | 213 | 3.764237 | AACCTCCGAACTAACACATGT | 57.236 | 42.857 | 0.00 | 0.00 | 0.00 | 3.21 |
229 | 230 | 1.153568 | GGCGTCCTTACCGGTAACC | 60.154 | 63.158 | 23.17 | 17.72 | 0.00 | 2.85 |
237 | 238 | 0.319297 | AACAGTCACGGCGTCCTTAC | 60.319 | 55.000 | 10.85 | 6.39 | 0.00 | 2.34 |
239 | 240 | 1.594293 | CAACAGTCACGGCGTCCTT | 60.594 | 57.895 | 10.85 | 0.00 | 0.00 | 3.36 |
243 | 244 | 2.157834 | TTATTCAACAGTCACGGCGT | 57.842 | 45.000 | 6.77 | 6.77 | 0.00 | 5.68 |
271 | 272 | 9.627123 | TCTTCTTCTTTCTTTGAGTGGAAATTA | 57.373 | 29.630 | 0.00 | 0.00 | 32.15 | 1.40 |
282 | 283 | 6.458888 | GGTGTTCAGGTCTTCTTCTTTCTTTG | 60.459 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
286 | 287 | 4.273724 | GTGGTGTTCAGGTCTTCTTCTTTC | 59.726 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
293 | 294 | 2.325583 | TGTGTGGTGTTCAGGTCTTC | 57.674 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
294 | 295 | 2.799126 | TTGTGTGGTGTTCAGGTCTT | 57.201 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
296 | 297 | 4.385358 | AATTTTGTGTGGTGTTCAGGTC | 57.615 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
298 | 299 | 5.977129 | GTCTAAATTTTGTGTGGTGTTCAGG | 59.023 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
299 | 300 | 5.977129 | GGTCTAAATTTTGTGTGGTGTTCAG | 59.023 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
300 | 301 | 5.419155 | TGGTCTAAATTTTGTGTGGTGTTCA | 59.581 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
301 | 302 | 5.897050 | TGGTCTAAATTTTGTGTGGTGTTC | 58.103 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
350 | 444 | 3.452474 | CCCAAATTGTTTCGTTGCTTCA | 58.548 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
359 | 453 | 3.177997 | ACACACAGCCCAAATTGTTTC | 57.822 | 42.857 | 0.00 | 0.00 | 0.00 | 2.78 |
466 | 560 | 2.920912 | AGACGGGGAACAGCCGAA | 60.921 | 61.111 | 0.00 | 0.00 | 36.66 | 4.30 |
467 | 561 | 3.379445 | GAGACGGGGAACAGCCGA | 61.379 | 66.667 | 0.00 | 0.00 | 36.66 | 5.54 |
468 | 562 | 4.452733 | GGAGACGGGGAACAGCCG | 62.453 | 72.222 | 0.00 | 0.00 | 39.06 | 5.52 |
488 | 582 | 1.559682 | CGGATTTGGGGAAGAGGAAGA | 59.440 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
490 | 584 | 1.280998 | GACGGATTTGGGGAAGAGGAA | 59.719 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
649 | 768 | 1.740296 | CGACGGACGCCCAATTTCT | 60.740 | 57.895 | 0.00 | 0.00 | 34.51 | 2.52 |
661 | 780 | 2.257371 | CGGCTCAGAAACGACGGA | 59.743 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
662 | 781 | 3.479269 | GCGGCTCAGAAACGACGG | 61.479 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
663 | 782 | 2.733218 | TGCGGCTCAGAAACGACG | 60.733 | 61.111 | 0.00 | 0.00 | 0.00 | 5.12 |
664 | 783 | 2.668280 | GGTGCGGCTCAGAAACGAC | 61.668 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
665 | 784 | 2.357034 | GGTGCGGCTCAGAAACGA | 60.357 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
677 | 796 | 2.154427 | GAAACCAGACGAACGGTGCG | 62.154 | 60.000 | 7.04 | 7.04 | 35.08 | 5.34 |
680 | 799 | 0.249741 | CCAGAAACCAGACGAACGGT | 60.250 | 55.000 | 0.00 | 0.00 | 36.98 | 4.83 |
717 | 865 | 3.220110 | CAGCAGCTCCAATCCATGTAAT | 58.780 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
786 | 934 | 0.768622 | ACCGAACCAACCAATCAGGA | 59.231 | 50.000 | 0.00 | 0.00 | 41.22 | 3.86 |
791 | 939 | 0.476771 | ACCTGACCGAACCAACCAAT | 59.523 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
802 | 950 | 0.324943 | AATCCACCAAGACCTGACCG | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
840 | 991 | 2.026262 | TCCAGAATACCCCAAACAGCTC | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
841 | 992 | 1.992557 | TCCAGAATACCCCAAACAGCT | 59.007 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
842 | 993 | 2.507407 | TCCAGAATACCCCAAACAGC | 57.493 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
853 | 1004 | 4.272489 | CAATTCCACCAGCTTCCAGAATA | 58.728 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
913 | 1064 | 7.552687 | CCTATGCACCATGATACCGTATTATTT | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
937 | 1088 | 1.062488 | AACCCAACTGCTCACCTCCT | 61.062 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
988 | 1143 | 1.308216 | CTCCCATCCCCCTCCTTGT | 60.308 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
989 | 1144 | 2.081161 | CCTCCCATCCCCCTCCTTG | 61.081 | 68.421 | 0.00 | 0.00 | 0.00 | 3.61 |
1020 | 1175 | 2.486203 | CGACTTGTCTACTGCAGAGACT | 59.514 | 50.000 | 29.73 | 18.96 | 43.19 | 3.24 |
1159 | 1320 | 1.516365 | AAAGACTGCTGCTGCTGCTG | 61.516 | 55.000 | 27.75 | 27.75 | 41.07 | 4.41 |
1160 | 1321 | 1.228184 | AAAGACTGCTGCTGCTGCT | 60.228 | 52.632 | 27.67 | 12.31 | 41.07 | 4.24 |
1161 | 1322 | 1.209640 | GAAAGACTGCTGCTGCTGC | 59.790 | 57.895 | 22.51 | 22.51 | 41.07 | 5.25 |
1162 | 1323 | 0.797542 | GAGAAAGACTGCTGCTGCTG | 59.202 | 55.000 | 18.66 | 18.66 | 42.70 | 4.41 |
1163 | 1324 | 0.669932 | CGAGAAAGACTGCTGCTGCT | 60.670 | 55.000 | 17.00 | 0.00 | 40.48 | 4.24 |
1164 | 1325 | 0.948141 | ACGAGAAAGACTGCTGCTGC | 60.948 | 55.000 | 8.89 | 8.89 | 40.20 | 5.25 |
1165 | 1326 | 1.458827 | GAACGAGAAAGACTGCTGCTG | 59.541 | 52.381 | 4.89 | 4.89 | 0.00 | 4.41 |
1218 | 1379 | 1.065272 | TGCTCAGCATCTGCACCATTA | 60.065 | 47.619 | 0.00 | 0.00 | 45.16 | 1.90 |
1283 | 1444 | 3.655211 | CCTTGCCCAGACCAGCCT | 61.655 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
1362 | 1523 | 2.325509 | AACAGTTAACGAAATGCGGC | 57.674 | 45.000 | 0.00 | 0.00 | 46.49 | 6.53 |
1380 | 1541 | 6.713450 | ACCGGAGAATTACTTTGAAAAGCTAA | 59.287 | 34.615 | 9.46 | 2.58 | 39.63 | 3.09 |
1422 | 1583 | 7.569408 | GCCATATGTCACTACAATTGTGATACG | 60.569 | 40.741 | 21.42 | 6.71 | 44.74 | 3.06 |
1426 | 1587 | 4.570369 | CGCCATATGTCACTACAATTGTGA | 59.430 | 41.667 | 21.42 | 7.24 | 39.58 | 3.58 |
1601 | 1764 | 1.281867 | TGCACCATCTAGAACAAGGGG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1602 | 1765 | 2.290260 | TGTGCACCATCTAGAACAAGGG | 60.290 | 50.000 | 15.69 | 0.00 | 0.00 | 3.95 |
1659 | 1822 | 0.326927 | GCCCCAGCCAACTACAGTTA | 59.673 | 55.000 | 0.00 | 0.00 | 36.32 | 2.24 |
1669 | 1832 | 3.664888 | ATGCTTCAGCCCCAGCCA | 61.665 | 61.111 | 0.00 | 0.00 | 41.25 | 4.75 |
1672 | 1835 | 0.035152 | TGTACATGCTTCAGCCCCAG | 60.035 | 55.000 | 0.00 | 0.00 | 41.18 | 4.45 |
1718 | 1881 | 3.699538 | TCCAGGCTACACAGTACAGTATG | 59.300 | 47.826 | 0.00 | 0.00 | 46.00 | 2.39 |
1733 | 1896 | 6.261826 | CGAAAAGATCAGAAAATATCCAGGCT | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 4.58 |
1820 | 1983 | 5.634020 | GGGCGAGTGTTATATACTCATTGAC | 59.366 | 44.000 | 14.46 | 4.44 | 43.65 | 3.18 |
1853 | 2016 | 4.393062 | ACTTGCGATTGTTAATCCAGACTG | 59.607 | 41.667 | 0.00 | 0.00 | 34.35 | 3.51 |
1859 | 2022 | 7.302524 | TGAAAACTACTTGCGATTGTTAATCC | 58.697 | 34.615 | 0.00 | 0.00 | 34.35 | 3.01 |
1873 | 2036 | 8.594550 | ACCAGTACATATCACTGAAAACTACTT | 58.405 | 33.333 | 13.35 | 0.00 | 45.10 | 2.24 |
1877 | 2040 | 7.004555 | TGACCAGTACATATCACTGAAAACT | 57.995 | 36.000 | 13.35 | 0.00 | 45.10 | 2.66 |
1895 | 2058 | 7.490962 | TTGTTAATCACACTTAACTGACCAG | 57.509 | 36.000 | 7.87 | 0.00 | 40.60 | 4.00 |
1948 | 2111 | 8.027524 | AGATGATATGAGTTTTTCCTCAGCTA | 57.972 | 34.615 | 0.00 | 0.00 | 44.25 | 3.32 |
1949 | 2112 | 6.897986 | AGATGATATGAGTTTTTCCTCAGCT | 58.102 | 36.000 | 0.00 | 0.00 | 44.25 | 4.24 |
2082 | 2245 | 1.025041 | GCCCGAGAAGCCCAAAATAG | 58.975 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2147 | 2351 | 8.284693 | GCTCACAAAAATTGCATCTTTTATTGT | 58.715 | 29.630 | 7.66 | 7.04 | 0.00 | 2.71 |
2242 | 2446 | 3.244215 | GGAATGAACACTCTGGACAGTCA | 60.244 | 47.826 | 2.17 | 0.00 | 0.00 | 3.41 |
2245 | 2449 | 3.407424 | TGGAATGAACACTCTGGACAG | 57.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
2412 | 2616 | 4.440839 | GCCACTGCTAGCATTTAAACTT | 57.559 | 40.909 | 19.72 | 0.00 | 33.53 | 2.66 |
2634 | 2838 | 3.311322 | TCAACACTTACCTTTTGTCAGCG | 59.689 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
2779 | 2983 | 7.017319 | ACTCCTACCAAAGCATTAAAGTACT | 57.983 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2797 | 3001 | 5.020795 | TGACATGCTACCACTTAACTCCTA | 58.979 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
2881 | 3086 | 2.623416 | CAGCCTATCATACGGACAGACA | 59.377 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2888 | 3093 | 3.507622 | TCTGTCATCAGCCTATCATACGG | 59.492 | 47.826 | 0.00 | 0.00 | 41.10 | 4.02 |
2918 | 3123 | 7.170277 | GGGTAATGAAACTACTCCCTTTGTTA | 58.830 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
2968 | 3173 | 4.786425 | AGAAAGGTTCTGCTGAAGTTCTT | 58.214 | 39.130 | 6.24 | 8.15 | 38.91 | 2.52 |
3090 | 3300 | 0.546122 | TCCAAGTTGTGCCACTGAGT | 59.454 | 50.000 | 1.45 | 0.00 | 0.00 | 3.41 |
3233 | 3443 | 3.130633 | CGGCATCTCGTTTCATGGAATA | 58.869 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
3239 | 3449 | 1.471676 | GGTCTCGGCATCTCGTTTCAT | 60.472 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
3334 | 3544 | 8.896320 | ACGGTACATAATGCAAATGACTTATA | 57.104 | 30.769 | 16.80 | 0.00 | 0.00 | 0.98 |
3355 | 3565 | 8.544597 | GTGCAAAATTTAAGTAATCAAAACGGT | 58.455 | 29.630 | 0.00 | 0.00 | 0.00 | 4.83 |
3387 | 3597 | 6.640499 | GTGCTAAATTCATTTGCACAGTTACA | 59.360 | 34.615 | 21.86 | 0.00 | 44.51 | 2.41 |
3429 | 3639 | 6.258727 | CCAGACATTGCTACGTTCTATTCATT | 59.741 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
3449 | 3659 | 1.541588 | GACAACTGAAATGGCCCAGAC | 59.458 | 52.381 | 13.03 | 0.00 | 34.65 | 3.51 |
3538 | 3748 | 4.614535 | GCACTACATGGTTCTTTGAGCAAG | 60.615 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
3561 | 3786 | 6.888430 | ACGCTTACAATTCAAACTAGAAGTG | 58.112 | 36.000 | 0.00 | 3.01 | 45.94 | 3.16 |
3565 | 3790 | 7.485418 | TTTGACGCTTACAATTCAAACTAGA | 57.515 | 32.000 | 0.00 | 0.00 | 33.96 | 2.43 |
3576 | 3804 | 5.885881 | ACTGAAAATGTTTGACGCTTACAA | 58.114 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3639 | 3867 | 3.441572 | AGTACTGAAATCATGCAGCCAAC | 59.558 | 43.478 | 0.00 | 0.00 | 35.57 | 3.77 |
3771 | 3999 | 7.869937 | CAGAAGTTCAAAAGACAGACATCTAGA | 59.130 | 37.037 | 5.50 | 0.00 | 0.00 | 2.43 |
3869 | 4126 | 5.112129 | TGAGGGGAGAAAGGTAAATAAGC | 57.888 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
4031 | 4288 | 6.137415 | CAGCTAAAAACATGCAAAAATGTGG | 58.863 | 36.000 | 0.00 | 0.00 | 39.89 | 4.17 |
4195 | 4455 | 6.377146 | GGCATTACTCTGGGATGAGTTTTTAA | 59.623 | 38.462 | 2.44 | 0.00 | 44.01 | 1.52 |
4239 | 4663 | 7.205737 | TGCACCATATTATTGTATTCTGCAG | 57.794 | 36.000 | 7.63 | 7.63 | 0.00 | 4.41 |
4241 | 4665 | 8.048534 | AGATGCACCATATTATTGTATTCTGC | 57.951 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
4385 | 4809 | 5.296151 | TGGATGGTCTGGATTGATTAGAC | 57.704 | 43.478 | 0.00 | 0.00 | 39.98 | 2.59 |
4447 | 4871 | 4.640364 | TGTGTGAGTGATGATAGTGCAAA | 58.360 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
4516 | 4940 | 4.710324 | TGAAACGTCAAGATGTAAAGGGT | 58.290 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
4602 | 5026 | 1.149101 | AAGCAACCAAGAGAAGGGGA | 58.851 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
4779 | 5203 | 6.820335 | TGCTTTAGTATATGCAGACTGTCAT | 58.180 | 36.000 | 10.88 | 14.18 | 0.00 | 3.06 |
5225 | 5651 | 9.199982 | CTTAACAAAAGACATGAGAATGCATTT | 57.800 | 29.630 | 14.33 | 3.59 | 0.00 | 2.32 |
5245 | 5671 | 5.359576 | ACTGGCTGACATGAAAAACTTAACA | 59.640 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5322 | 5748 | 3.243907 | GGAAACTGAGGGTCATCTATCCG | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 4.18 |
5403 | 5829 | 9.241919 | TCTCAATAAAGATTCATTACCTTTGCA | 57.758 | 29.630 | 0.00 | 0.00 | 32.92 | 4.08 |
5416 | 5842 | 9.902684 | AGTTCAGACATGATCTCAATAAAGATT | 57.097 | 29.630 | 0.00 | 0.00 | 36.13 | 2.40 |
5484 | 5912 | 3.950397 | TCTGCAACAAGTAATTCCGGAT | 58.050 | 40.909 | 4.15 | 0.00 | 0.00 | 4.18 |
5500 | 5929 | 6.597672 | ACGTCTAAAATACATCCATTTCTGCA | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 4.41 |
5548 | 5988 | 4.994852 | TCCCGAATTACTTGTCACAGAAAG | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
5594 | 6034 | 9.449719 | AAAAACCCAAGAACACATCTATACTAG | 57.550 | 33.333 | 0.00 | 0.00 | 37.42 | 2.57 |
5602 | 6042 | 4.857037 | GCGATAAAAACCCAAGAACACATC | 59.143 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
5686 | 6156 | 0.388778 | TCATGCATGCACAAAAGCCG | 60.389 | 50.000 | 25.37 | 4.30 | 0.00 | 5.52 |
5955 | 6425 | 6.982141 | TCCAGTAGTGTTAACTTACAAGTGTG | 59.018 | 38.462 | 17.35 | 9.79 | 39.66 | 3.82 |
5972 | 6444 | 9.823647 | CAGAATAGTTGTGATATTTCCAGTAGT | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
6038 | 6510 | 5.947228 | TGAACTTAAGCAGACATCTTTGG | 57.053 | 39.130 | 1.29 | 0.00 | 0.00 | 3.28 |
6183 | 6655 | 9.969001 | ATAGTGCCCTTTAGTATTTTAACTTCA | 57.031 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
6209 | 6681 | 2.238395 | TGGTGCAGTATGTAGAATGCCA | 59.762 | 45.455 | 0.00 | 0.00 | 39.31 | 4.92 |
6219 | 6691 | 5.345702 | CCAAAAAGATGATGGTGCAGTATG | 58.654 | 41.667 | 0.00 | 0.00 | 40.87 | 2.39 |
6266 | 6738 | 0.671251 | TTGGGTCCGCAATCAACAAC | 59.329 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
6277 | 6749 | 1.519408 | AACTCACGATTTTGGGTCCG | 58.481 | 50.000 | 0.00 | 0.00 | 26.58 | 4.79 |
6343 | 6815 | 1.230324 | GGTGTCAAGTGTTGAGAGGC | 58.770 | 55.000 | 0.00 | 0.00 | 41.01 | 4.70 |
6353 | 6825 | 2.031163 | GCAGAGGCGGTGTCAAGT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
6384 | 6856 | 2.285743 | AGGGGAGAGGGGTCTTGC | 60.286 | 66.667 | 0.00 | 0.00 | 0.00 | 4.01 |
6469 | 6941 | 3.275338 | GCGAGGCCTGCAGCATAC | 61.275 | 66.667 | 12.00 | 0.00 | 46.50 | 2.39 |
6548 | 7020 | 1.882623 | CTCTTGGAAGTTGAACTGGGC | 59.117 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
6572 | 7053 | 2.748058 | TTTCAGGGAGCGGCCAGTTC | 62.748 | 60.000 | 2.24 | 3.03 | 38.95 | 3.01 |
6578 | 7059 | 1.746991 | CCTTCTTTCAGGGAGCGGC | 60.747 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
6722 | 7203 | 3.483587 | GGGGGTCTTCAGTCTGCA | 58.516 | 61.111 | 0.00 | 0.00 | 0.00 | 4.41 |
6783 | 7285 | 5.163683 | GCAACATCTGATAGTGCAATTGAGT | 60.164 | 40.000 | 10.34 | 0.20 | 0.00 | 3.41 |
7045 | 7630 | 1.967066 | AGTAGCAGCGAATATGAGCCT | 59.033 | 47.619 | 0.00 | 0.00 | 0.00 | 4.58 |
7071 | 7656 | 1.418373 | TCGCGATTCACAACTGTCTG | 58.582 | 50.000 | 3.71 | 0.00 | 0.00 | 3.51 |
7116 | 7701 | 2.620115 | ACATCGCCATAGCAAGGAATTG | 59.380 | 45.455 | 0.00 | 0.00 | 39.83 | 2.32 |
7132 | 7717 | 8.703336 | CATGTTCCAGTGTTATAAGATACATCG | 58.297 | 37.037 | 0.00 | 0.00 | 0.00 | 3.84 |
7531 | 8123 | 3.326006 | TCAGTCTTGTCCTTCTCAGCATT | 59.674 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
7746 | 8338 | 3.746045 | TTCCTGTACTTGACACACCTC | 57.254 | 47.619 | 0.00 | 0.00 | 33.31 | 3.85 |
7806 | 8398 | 1.668751 | TGTTTGTCGTGCCTTGACTTC | 59.331 | 47.619 | 2.40 | 0.00 | 37.26 | 3.01 |
7869 | 8461 | 7.951347 | AAATGATAGCAGATCTTTCCTGTTT | 57.049 | 32.000 | 0.00 | 0.00 | 34.29 | 2.83 |
8008 | 8600 | 3.618594 | CACAGTATCCAGGTTCATTCACG | 59.381 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
8041 | 8633 | 5.513788 | GCCAGAGCTATGGATTTCAGGATAA | 60.514 | 44.000 | 31.31 | 0.00 | 43.57 | 1.75 |
8082 | 8674 | 4.760047 | CTCGGACGGGTGGCCTTG | 62.760 | 72.222 | 3.32 | 0.00 | 0.00 | 3.61 |
8106 | 8719 | 1.672881 | CAGTTTGGCATACTGCTAGGC | 59.327 | 52.381 | 22.06 | 0.00 | 44.28 | 3.93 |
8119 | 8732 | 4.073293 | ACACCAGTTACTCTCAGTTTGG | 57.927 | 45.455 | 0.00 | 0.00 | 32.63 | 3.28 |
8123 | 8736 | 3.497332 | TGCTACACCAGTTACTCTCAGT | 58.503 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
8124 | 8737 | 4.521130 | TTGCTACACCAGTTACTCTCAG | 57.479 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
8177 | 8790 | 5.874895 | AGTTTTTACAATAACTCCGCTCC | 57.125 | 39.130 | 0.00 | 0.00 | 28.79 | 4.70 |
8253 | 8866 | 5.300034 | CAGGCCATGTATATTCACAACACAT | 59.700 | 40.000 | 5.01 | 0.00 | 30.84 | 3.21 |
8302 | 8928 | 5.067153 | CGGCCTTACATCCACATTTGAAATA | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
8331 | 8957 | 3.131046 | CCCATGGCTACTTTGGTGAAATC | 59.869 | 47.826 | 6.09 | 0.00 | 0.00 | 2.17 |
8360 | 8986 | 4.284123 | TGCTCGCTCGCATTTTCT | 57.716 | 50.000 | 0.00 | 0.00 | 34.44 | 2.52 |
8453 | 9080 | 5.550290 | TCTGTATGAGCATGTGAAAGTTGA | 58.450 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
8561 | 9197 | 8.547173 | GTGGAATGAGGAATCTATTGAGGATAT | 58.453 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
8619 | 9261 | 6.380995 | GTCAATCACAATGTCATTTGTAGCA | 58.619 | 36.000 | 0.00 | 0.00 | 37.73 | 3.49 |
8650 | 9292 | 4.263994 | ACCAGAGGTCATACTCACTGTAGT | 60.264 | 45.833 | 0.00 | 0.00 | 39.97 | 2.73 |
8651 | 9293 | 4.274147 | ACCAGAGGTCATACTCACTGTAG | 58.726 | 47.826 | 0.00 | 0.00 | 39.97 | 2.74 |
8655 | 9297 | 5.186021 | CACTTTACCAGAGGTCATACTCACT | 59.814 | 44.000 | 0.00 | 0.00 | 39.97 | 3.41 |
8666 | 9308 | 9.396022 | ACAATGAATATAACACTTTACCAGAGG | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
8699 | 9341 | 0.032017 | TTGCCCTAGAGAGACCTCCC | 60.032 | 60.000 | 0.00 | 0.00 | 40.30 | 4.30 |
8843 | 9485 | 1.808411 | TTTGGAGTTGAGCCGATGTC | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
8864 | 9506 | 8.579006 | TGCAGTTCTTTGAAATGACATTAGAAT | 58.421 | 29.630 | 12.16 | 0.00 | 0.00 | 2.40 |
8872 | 9514 | 5.581605 | TCAACTGCAGTTCTTTGAAATGAC | 58.418 | 37.500 | 28.97 | 4.30 | 35.83 | 3.06 |
8912 | 9554 | 1.202582 | GATGTAGACAGTGACTGCGGT | 59.797 | 52.381 | 13.37 | 0.00 | 34.37 | 5.68 |
8933 | 9575 | 5.677178 | GGCATTTCGAAAACGATACAAGATC | 59.323 | 40.000 | 15.66 | 0.00 | 0.00 | 2.75 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.