Multiple sequence alignment - TraesCS1B01G279300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G279300 chr1B 100.000 3342 0 0 972 4313 487682191 487678850 0.000000e+00 6172.0
1 TraesCS1B01G279300 chr1B 100.000 665 0 0 1 665 487683162 487682498 0.000000e+00 1229.0
2 TraesCS1B01G279300 chr1B 97.297 37 1 0 4135 4171 487678915 487678879 3.600000e-06 63.9
3 TraesCS1B01G279300 chr1B 97.297 37 1 0 4248 4284 487679028 487678992 3.600000e-06 63.9
4 TraesCS1B01G279300 chr1D 96.502 2773 92 5 972 3740 364387055 364384284 0.000000e+00 4578.0
5 TraesCS1B01G279300 chr1D 90.170 529 35 12 154 665 364387742 364387214 0.000000e+00 673.0
6 TraesCS1B01G279300 chr1D 95.946 148 6 0 10 157 364387925 364387778 1.550000e-59 241.0
7 TraesCS1B01G279300 chr1A 95.971 2780 83 13 972 3742 463403006 463400247 0.000000e+00 4486.0
8 TraesCS1B01G279300 chr1A 85.060 502 48 17 174 649 463403917 463403417 1.800000e-133 486.0
9 TraesCS1B01G279300 chr1A 91.304 184 8 1 1 176 463404126 463403943 1.200000e-60 244.0
10 TraesCS1B01G279300 chr1A 92.357 157 12 0 3924 4080 360460146 360459990 1.560000e-54 224.0
11 TraesCS1B01G279300 chr1A 91.195 159 14 0 3922 4080 22930554 22930712 2.610000e-52 217.0
12 TraesCS1B01G279300 chr1A 87.611 113 11 1 3805 3917 463400240 463400131 1.260000e-25 128.0
13 TraesCS1B01G279300 chr6B 95.840 1947 78 2 993 2937 500525860 500523915 0.000000e+00 3144.0
14 TraesCS1B01G279300 chr5A 94.769 1950 78 3 990 2937 396680471 396682398 0.000000e+00 3014.0
15 TraesCS1B01G279300 chr2D 92.500 160 11 1 3922 4081 591292504 591292662 1.210000e-55 228.0
16 TraesCS1B01G279300 chr5B 91.925 161 11 2 3920 4080 487329535 487329377 1.560000e-54 224.0
17 TraesCS1B01G279300 chr3D 92.810 153 9 2 3924 4075 54675335 54675184 2.020000e-53 220.0
18 TraesCS1B01G279300 chr3B 91.358 162 13 1 3918 4078 723446914 723446753 2.020000e-53 220.0
19 TraesCS1B01G279300 chr3B 83.544 158 26 0 1334 1491 627615547 627615390 9.660000e-32 148.0
20 TraesCS1B01G279300 chr3B 90.291 103 10 0 1585 1687 627615397 627615295 7.520000e-28 135.0
21 TraesCS1B01G279300 chr3B 91.304 69 5 1 3735 3803 214558315 214558382 4.590000e-15 93.5
22 TraesCS1B01G279300 chr4B 91.195 159 14 0 3922 4080 621703409 621703567 2.610000e-52 217.0
23 TraesCS1B01G279300 chr7D 87.634 186 21 2 3920 4104 638481758 638481574 9.390000e-52 215.0
24 TraesCS1B01G279300 chr7D 92.857 56 3 1 3737 3792 106798729 106798675 3.580000e-11 80.5
25 TraesCS1B01G279300 chr2A 87.778 180 21 1 3922 4100 694757384 694757563 4.370000e-50 209.0
26 TraesCS1B01G279300 chr6D 92.647 68 4 1 3736 3803 8551033 8551099 3.550000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G279300 chr1B 487678850 487683162 4312 True 1882.200000 6172 98.6485 1 4313 4 chr1B.!!$R1 4312
1 TraesCS1B01G279300 chr1D 364384284 364387925 3641 True 1830.666667 4578 94.2060 10 3740 3 chr1D.!!$R1 3730
2 TraesCS1B01G279300 chr1A 463400131 463404126 3995 True 1336.000000 4486 89.9865 1 3917 4 chr1A.!!$R2 3916
3 TraesCS1B01G279300 chr6B 500523915 500525860 1945 True 3144.000000 3144 95.8400 993 2937 1 chr6B.!!$R1 1944
4 TraesCS1B01G279300 chr5A 396680471 396682398 1927 False 3014.000000 3014 94.7690 990 2937 1 chr5A.!!$F1 1947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 621 0.886563 CGGATATACGAGGGACACCC 59.113 60.0 0.0 0.0 45.90 4.61 F
1371 1562 0.664224 GGTTCGATCTCTCCGAGGTC 59.336 60.0 0.0 0.0 36.54 3.85 F
2655 2848 0.756903 AGGTGGTTGAGTACACGCTT 59.243 50.0 0.0 0.0 38.46 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1694 2.272146 GAATGCCAAGCCTCCGGA 59.728 61.111 2.93 2.93 0.00 5.14 R
3288 3481 0.804544 TAAGCGAATCGGACTTGGCG 60.805 55.000 4.35 0.00 35.31 5.69 R
3646 3844 0.025001 GAACATGATCGACGCAACGG 59.975 55.000 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 4.802051 TTCGCTGCAGGATGGGCC 62.802 66.667 17.12 0.00 35.86 5.80
179 219 4.154195 CACGTAAATGGCTAGCAAGAAAGT 59.846 41.667 18.24 5.11 0.00 2.66
189 253 5.339990 GCTAGCAAGAAAGTGAAACAAACA 58.660 37.500 10.63 0.00 41.43 2.83
196 260 4.621034 AGAAAGTGAAACAAACAAACAGCG 59.379 37.500 0.00 0.00 41.43 5.18
197 261 3.569250 AGTGAAACAAACAAACAGCGT 57.431 38.095 0.00 0.00 41.43 5.07
303 392 0.915872 TGTCCAGCACATCCATCCCT 60.916 55.000 0.00 0.00 0.00 4.20
464 556 2.945798 ACGTATCGTGCTCTATCGTC 57.054 50.000 0.00 0.00 39.18 4.20
470 562 1.299468 GTGCTCTATCGTCTGGGCG 60.299 63.158 0.00 0.00 0.00 6.13
471 563 1.753078 TGCTCTATCGTCTGGGCGT 60.753 57.895 0.00 0.00 0.00 5.68
473 565 1.448922 GCTCTATCGTCTGGGCGTCT 61.449 60.000 0.00 0.00 0.00 4.18
474 566 1.880271 CTCTATCGTCTGGGCGTCTA 58.120 55.000 0.00 0.00 0.00 2.59
476 568 1.140452 TCTATCGTCTGGGCGTCTAGT 59.860 52.381 0.00 0.00 0.00 2.57
520 612 8.084073 CCCTTTTTGTTAGATACGGATATACGA 58.916 37.037 15.86 0.00 37.61 3.43
524 616 6.053632 TGTTAGATACGGATATACGAGGGA 57.946 41.667 15.86 0.00 37.61 4.20
529 621 0.886563 CGGATATACGAGGGACACCC 59.113 60.000 0.00 0.00 45.90 4.61
564 656 1.217244 CCGGGATTCGTTTCGAGGT 59.783 57.895 0.00 0.00 37.14 3.85
585 677 2.440627 TGCTACAGATCCCTCTACCGTA 59.559 50.000 0.00 0.00 0.00 4.02
1359 1550 2.426023 GGCCGCATAGGGTTCGAT 59.574 61.111 0.00 0.00 41.48 3.59
1371 1562 0.664224 GGTTCGATCTCTCCGAGGTC 59.336 60.000 0.00 0.00 36.54 3.85
1473 1664 1.485838 GCGAGATCATGCTGTCGGTG 61.486 60.000 16.49 0.00 32.97 4.94
2358 2551 2.097825 AGCATTGGCAAGGTCAGAATC 58.902 47.619 13.90 0.00 44.61 2.52
2412 2605 4.019174 ACACCCATTTCTATCCTTTGCTG 58.981 43.478 0.00 0.00 0.00 4.41
2643 2836 4.335647 CTGCGCAGGGAGGTGGTT 62.336 66.667 29.88 0.00 0.00 3.67
2655 2848 0.756903 AGGTGGTTGAGTACACGCTT 59.243 50.000 0.00 0.00 38.46 4.68
3048 3241 1.376553 GCTGAGGAGTGTTGGAGGC 60.377 63.158 0.00 0.00 0.00 4.70
3348 3542 4.335594 CGACAGAAGATAAAATGGGGGAAC 59.664 45.833 0.00 0.00 0.00 3.62
3373 3567 4.416516 TGTAACATTGTCCTCCTCTCTCA 58.583 43.478 0.00 0.00 0.00 3.27
3418 3612 8.657729 GCATCAGATCAGATGTGAATATACTTG 58.342 37.037 24.08 7.37 45.58 3.16
3460 3658 1.143684 CAGCTGGTGGCCCTGTAATAT 59.856 52.381 5.57 0.00 43.05 1.28
3521 3719 2.204244 AAGGGAATGACCGGGGGT 60.204 61.111 6.32 0.00 39.44 4.95
3560 3758 4.504689 GGATGAAAAATGTTGGCTTTGGGA 60.505 41.667 0.00 0.00 0.00 4.37
3586 3784 1.229177 TGTAGAGCTGGGCACAGGA 60.229 57.895 19.71 0.00 45.04 3.86
3631 3829 4.052159 TGTATTGGTGCCAGTTTTGTTG 57.948 40.909 0.00 0.00 0.00 3.33
3646 3844 8.755018 CCAGTTTTGTTGATGTTCTGTTAATTC 58.245 33.333 0.00 0.00 0.00 2.17
3647 3845 8.755018 CAGTTTTGTTGATGTTCTGTTAATTCC 58.245 33.333 0.00 0.00 0.00 3.01
3651 3849 6.434596 TGTTGATGTTCTGTTAATTCCGTTG 58.565 36.000 0.00 0.00 0.00 4.10
3655 3853 3.059461 TGTTCTGTTAATTCCGTTGCGTC 60.059 43.478 0.00 0.00 0.00 5.19
3665 3863 0.025001 CCGTTGCGTCGATCATGTTC 59.975 55.000 0.00 0.00 0.00 3.18
3667 3865 1.359848 GTTGCGTCGATCATGTTCCT 58.640 50.000 0.00 0.00 0.00 3.36
3668 3866 1.061131 GTTGCGTCGATCATGTTCCTG 59.939 52.381 0.00 0.00 0.00 3.86
3679 3879 4.591321 TCATGTTCCTGCCCTAATCTTT 57.409 40.909 0.00 0.00 0.00 2.52
3688 3888 6.548321 TCCTGCCCTAATCTTTTTCTTGTAA 58.452 36.000 0.00 0.00 0.00 2.41
3689 3889 7.182060 TCCTGCCCTAATCTTTTTCTTGTAAT 58.818 34.615 0.00 0.00 0.00 1.89
3690 3890 8.333235 TCCTGCCCTAATCTTTTTCTTGTAATA 58.667 33.333 0.00 0.00 0.00 0.98
3728 3931 5.339423 TCCTTTCCCTTTCTCCAGAAATT 57.661 39.130 2.21 0.00 42.44 1.82
3742 3945 8.480133 TCTCCAGAAATTTATCTACTACTCCC 57.520 38.462 0.00 0.00 0.00 4.30
3743 3946 7.509659 TCTCCAGAAATTTATCTACTACTCCCC 59.490 40.741 0.00 0.00 0.00 4.81
3744 3947 6.557633 TCCAGAAATTTATCTACTACTCCCCC 59.442 42.308 0.00 0.00 0.00 5.40
3763 3966 5.135508 CCCCCGTCTCATAATGTAACTAG 57.864 47.826 0.00 0.00 0.00 2.57
3764 3967 4.587684 CCCCCGTCTCATAATGTAACTAGT 59.412 45.833 0.00 0.00 0.00 2.57
3765 3968 5.509163 CCCCCGTCTCATAATGTAACTAGTG 60.509 48.000 0.00 0.00 0.00 2.74
3766 3969 5.068723 CCCCGTCTCATAATGTAACTAGTGT 59.931 44.000 0.00 0.00 0.00 3.55
3767 3970 6.207213 CCCGTCTCATAATGTAACTAGTGTC 58.793 44.000 0.00 0.00 0.00 3.67
3768 3971 6.183360 CCCGTCTCATAATGTAACTAGTGTCA 60.183 42.308 0.00 0.00 0.00 3.58
3769 3972 7.255569 CCGTCTCATAATGTAACTAGTGTCAA 58.744 38.462 0.00 0.00 0.00 3.18
3770 3973 7.758076 CCGTCTCATAATGTAACTAGTGTCAAA 59.242 37.037 0.00 0.00 0.00 2.69
3771 3974 9.135843 CGTCTCATAATGTAACTAGTGTCAAAA 57.864 33.333 0.00 0.00 0.00 2.44
3795 3998 9.675464 AAAAACGTCTTTACATTATAGGATGGA 57.325 29.630 0.00 0.00 0.00 3.41
3796 3999 8.888579 AAACGTCTTTACATTATAGGATGGAG 57.111 34.615 0.00 0.00 0.00 3.86
3797 4000 6.994221 ACGTCTTTACATTATAGGATGGAGG 58.006 40.000 0.00 0.00 0.00 4.30
3798 4001 6.014499 ACGTCTTTACATTATAGGATGGAGGG 60.014 42.308 0.00 0.00 0.00 4.30
3799 4002 6.210784 CGTCTTTACATTATAGGATGGAGGGA 59.789 42.308 0.00 0.00 0.00 4.20
3800 4003 7.577807 CGTCTTTACATTATAGGATGGAGGGAG 60.578 44.444 0.00 0.00 0.00 4.30
3801 4004 7.235812 GTCTTTACATTATAGGATGGAGGGAGT 59.764 40.741 0.00 0.00 0.00 3.85
3802 4005 8.461854 TCTTTACATTATAGGATGGAGGGAGTA 58.538 37.037 0.00 0.00 0.00 2.59
3803 4006 8.666129 TTTACATTATAGGATGGAGGGAGTAG 57.334 38.462 0.00 0.00 0.00 2.57
3808 4011 2.472029 AGGATGGAGGGAGTAGTTGTG 58.528 52.381 0.00 0.00 0.00 3.33
3844 4047 2.325583 TTTTTCAGAGGTCACGCTGT 57.674 45.000 0.00 0.00 43.88 4.40
3857 4060 1.792949 CACGCTGTGGTAGTTTCACTC 59.207 52.381 1.40 0.00 36.21 3.51
3862 4065 3.309388 CTGTGGTAGTTTCACTCTGACG 58.691 50.000 0.00 0.00 36.21 4.35
3863 4066 2.059541 GTGGTAGTTTCACTCTGACGC 58.940 52.381 0.00 0.00 32.78 5.19
3864 4067 1.961394 TGGTAGTTTCACTCTGACGCT 59.039 47.619 0.00 0.00 0.00 5.07
3907 4110 3.730215 ACCATGTTGGGTATGTTGCTA 57.270 42.857 0.00 0.00 43.37 3.49
3909 4112 4.016444 ACCATGTTGGGTATGTTGCTAAG 58.984 43.478 0.00 0.00 43.37 2.18
3917 4120 4.018870 TGGGTATGTTGCTAAGGTTCATCA 60.019 41.667 0.00 0.00 0.00 3.07
3918 4121 5.133221 GGGTATGTTGCTAAGGTTCATCAT 58.867 41.667 0.00 0.00 0.00 2.45
3919 4122 5.239525 GGGTATGTTGCTAAGGTTCATCATC 59.760 44.000 0.00 0.00 0.00 2.92
3920 4123 6.058183 GGTATGTTGCTAAGGTTCATCATCT 58.942 40.000 0.00 0.00 0.00 2.90
3921 4124 6.543831 GGTATGTTGCTAAGGTTCATCATCTT 59.456 38.462 0.00 0.00 0.00 2.40
3922 4125 7.715249 GGTATGTTGCTAAGGTTCATCATCTTA 59.285 37.037 0.00 0.00 0.00 2.10
3923 4126 9.109393 GTATGTTGCTAAGGTTCATCATCTTAA 57.891 33.333 0.00 0.00 0.00 1.85
3924 4127 7.615582 TGTTGCTAAGGTTCATCATCTTAAG 57.384 36.000 0.00 0.00 0.00 1.85
3925 4128 6.599244 TGTTGCTAAGGTTCATCATCTTAAGG 59.401 38.462 1.85 0.00 0.00 2.69
3926 4129 5.126067 TGCTAAGGTTCATCATCTTAAGGC 58.874 41.667 1.85 0.00 0.00 4.35
3927 4130 4.517075 GCTAAGGTTCATCATCTTAAGGCC 59.483 45.833 1.85 0.00 0.00 5.19
3928 4131 4.870021 AAGGTTCATCATCTTAAGGCCT 57.130 40.909 0.00 0.00 0.00 5.19
3929 4132 4.870021 AGGTTCATCATCTTAAGGCCTT 57.130 40.909 24.18 24.18 0.00 4.35
3930 4133 4.530875 AGGTTCATCATCTTAAGGCCTTG 58.469 43.478 28.77 12.58 0.00 3.61
3931 4134 4.018050 AGGTTCATCATCTTAAGGCCTTGT 60.018 41.667 28.77 4.97 0.00 3.16
3932 4135 5.191722 AGGTTCATCATCTTAAGGCCTTGTA 59.808 40.000 28.77 14.59 0.00 2.41
3933 4136 5.297029 GGTTCATCATCTTAAGGCCTTGTAC 59.703 44.000 28.77 12.58 0.00 2.90
3934 4137 5.692115 TCATCATCTTAAGGCCTTGTACA 57.308 39.130 28.77 4.66 0.00 2.90
3935 4138 6.061022 TCATCATCTTAAGGCCTTGTACAA 57.939 37.500 28.77 13.14 0.00 2.41
3936 4139 6.662755 TCATCATCTTAAGGCCTTGTACAAT 58.337 36.000 28.77 11.23 0.00 2.71
3937 4140 6.543465 TCATCATCTTAAGGCCTTGTACAATG 59.457 38.462 28.77 21.06 0.00 2.82
3938 4141 4.640201 TCATCTTAAGGCCTTGTACAATGC 59.360 41.667 28.77 23.06 0.00 3.56
3939 4142 4.027674 TCTTAAGGCCTTGTACAATGCA 57.972 40.909 29.20 12.62 34.30 3.96
3940 4143 4.402829 TCTTAAGGCCTTGTACAATGCAA 58.597 39.130 29.20 17.84 34.30 4.08
3941 4144 4.458989 TCTTAAGGCCTTGTACAATGCAAG 59.541 41.667 29.20 23.92 42.00 4.01
3942 4145 2.584835 AGGCCTTGTACAATGCAAGA 57.415 45.000 29.20 0.00 44.29 3.02
3943 4146 3.091633 AGGCCTTGTACAATGCAAGAT 57.908 42.857 29.20 14.27 44.29 2.40
3944 4147 2.756760 AGGCCTTGTACAATGCAAGATG 59.243 45.455 29.20 8.77 44.29 2.90
3945 4148 2.533266 GCCTTGTACAATGCAAGATGC 58.467 47.619 25.28 8.66 44.29 3.91
3946 4149 2.165030 GCCTTGTACAATGCAAGATGCT 59.835 45.455 25.28 0.00 45.31 3.79
3947 4150 3.367703 GCCTTGTACAATGCAAGATGCTT 60.368 43.478 25.28 0.00 45.31 3.91
3948 4151 4.142403 GCCTTGTACAATGCAAGATGCTTA 60.142 41.667 25.28 0.00 45.31 3.09
3949 4152 5.575957 CCTTGTACAATGCAAGATGCTTAG 58.424 41.667 9.13 0.00 45.31 2.18
3950 4153 5.355071 CCTTGTACAATGCAAGATGCTTAGA 59.645 40.000 9.13 0.00 45.31 2.10
3951 4154 6.039047 CCTTGTACAATGCAAGATGCTTAGAT 59.961 38.462 9.13 0.00 45.31 1.98
3952 4155 7.227314 CCTTGTACAATGCAAGATGCTTAGATA 59.773 37.037 9.13 0.00 45.31 1.98
3953 4156 8.504812 TTGTACAATGCAAGATGCTTAGATAA 57.495 30.769 3.59 0.00 45.31 1.75
3954 4157 8.504812 TGTACAATGCAAGATGCTTAGATAAA 57.495 30.769 3.78 0.00 45.31 1.40
3955 4158 9.123902 TGTACAATGCAAGATGCTTAGATAAAT 57.876 29.630 3.78 0.00 45.31 1.40
3960 4163 9.971922 AATGCAAGATGCTTAGATAAATAAACC 57.028 29.630 3.78 0.00 45.31 3.27
3961 4164 8.518430 TGCAAGATGCTTAGATAAATAAACCA 57.482 30.769 3.78 0.00 45.31 3.67
3962 4165 8.623903 TGCAAGATGCTTAGATAAATAAACCAG 58.376 33.333 3.78 0.00 45.31 4.00
3963 4166 8.078596 GCAAGATGCTTAGATAAATAAACCAGG 58.921 37.037 0.00 0.00 40.96 4.45
3964 4167 9.125026 CAAGATGCTTAGATAAATAAACCAGGT 57.875 33.333 0.00 0.00 0.00 4.00
3965 4168 9.700831 AAGATGCTTAGATAAATAAACCAGGTT 57.299 29.630 0.00 0.00 0.00 3.50
3966 4169 9.700831 AGATGCTTAGATAAATAAACCAGGTTT 57.299 29.630 21.55 21.55 39.24 3.27
3969 4172 8.745590 TGCTTAGATAAATAAACCAGGTTTTCC 58.254 33.333 22.95 6.44 37.01 3.13
3981 4184 1.612676 GGTTTTCCTTAAGCACCGGT 58.387 50.000 0.00 0.00 36.94 5.28
3982 4185 1.268625 GGTTTTCCTTAAGCACCGGTG 59.731 52.381 30.66 30.66 36.94 4.94
3983 4186 4.529232 GGTTTTCCTTAAGCACCGGTGC 62.529 54.545 45.27 45.27 45.98 5.01
3997 4200 4.699637 CACCGGTGCTTATTTATACAGGA 58.300 43.478 24.02 0.00 33.46 3.86
3998 4201 5.305585 CACCGGTGCTTATTTATACAGGAT 58.694 41.667 24.02 0.00 33.46 3.24
3999 4202 6.460781 CACCGGTGCTTATTTATACAGGATA 58.539 40.000 24.02 0.00 33.46 2.59
4000 4203 6.590292 CACCGGTGCTTATTTATACAGGATAG 59.410 42.308 24.02 0.00 33.46 2.08
4001 4204 6.495872 ACCGGTGCTTATTTATACAGGATAGA 59.504 38.462 6.12 0.00 33.46 1.98
4002 4205 6.812160 CCGGTGCTTATTTATACAGGATAGAC 59.188 42.308 0.00 0.00 31.25 2.59
4003 4206 6.527023 CGGTGCTTATTTATACAGGATAGACG 59.473 42.308 0.00 0.00 0.00 4.18
4004 4207 6.310711 GGTGCTTATTTATACAGGATAGACGC 59.689 42.308 0.00 0.00 0.00 5.19
4005 4208 7.091443 GTGCTTATTTATACAGGATAGACGCT 58.909 38.462 0.00 0.00 0.00 5.07
4006 4209 7.599245 GTGCTTATTTATACAGGATAGACGCTT 59.401 37.037 0.00 0.00 0.00 4.68
4007 4210 8.799367 TGCTTATTTATACAGGATAGACGCTTA 58.201 33.333 0.00 0.00 0.00 3.09
4008 4211 9.635520 GCTTATTTATACAGGATAGACGCTTAA 57.364 33.333 0.00 0.00 0.00 1.85
4028 4231 7.074507 CTTAACTAAGCGTCTCTTCTGTAGA 57.925 40.000 0.00 0.00 36.25 2.59
4029 4232 5.961396 AACTAAGCGTCTCTTCTGTAGAA 57.039 39.130 0.00 0.00 36.25 2.10
4030 4233 5.961396 ACTAAGCGTCTCTTCTGTAGAAA 57.039 39.130 0.00 0.00 36.25 2.52
4031 4234 6.518208 ACTAAGCGTCTCTTCTGTAGAAAT 57.482 37.500 0.00 0.00 36.25 2.17
4032 4235 7.627298 ACTAAGCGTCTCTTCTGTAGAAATA 57.373 36.000 0.00 0.00 36.25 1.40
4033 4236 7.699566 ACTAAGCGTCTCTTCTGTAGAAATAG 58.300 38.462 0.00 0.00 36.25 1.73
4034 4237 5.508200 AGCGTCTCTTCTGTAGAAATAGG 57.492 43.478 0.00 0.00 33.07 2.57
4035 4238 4.045783 GCGTCTCTTCTGTAGAAATAGGC 58.954 47.826 0.00 0.00 33.07 3.93
4036 4239 4.440250 GCGTCTCTTCTGTAGAAATAGGCA 60.440 45.833 8.22 0.00 33.07 4.75
4037 4240 5.038033 CGTCTCTTCTGTAGAAATAGGCAC 58.962 45.833 8.22 0.58 33.07 5.01
4038 4241 5.353111 GTCTCTTCTGTAGAAATAGGCACC 58.647 45.833 0.00 0.00 33.07 5.01
4039 4242 4.098044 TCTCTTCTGTAGAAATAGGCACCG 59.902 45.833 0.00 0.00 33.07 4.94
4040 4243 3.132289 TCTTCTGTAGAAATAGGCACCGG 59.868 47.826 0.00 0.00 33.07 5.28
4041 4244 2.463752 TCTGTAGAAATAGGCACCGGT 58.536 47.619 0.00 0.00 0.00 5.28
4042 4245 2.167693 TCTGTAGAAATAGGCACCGGTG 59.832 50.000 30.66 30.66 0.00 4.94
4075 4278 9.758651 AAAAACTCGGTTTATTTTTCTAAGCAT 57.241 25.926 3.01 0.00 34.43 3.79
4076 4279 8.965986 AAACTCGGTTTATTTTTCTAAGCATC 57.034 30.769 0.86 0.00 33.70 3.91
4077 4280 7.923414 ACTCGGTTTATTTTTCTAAGCATCT 57.077 32.000 0.00 0.00 0.00 2.90
4078 4281 7.975750 ACTCGGTTTATTTTTCTAAGCATCTC 58.024 34.615 0.00 0.00 0.00 2.75
4079 4282 7.824779 ACTCGGTTTATTTTTCTAAGCATCTCT 59.175 33.333 0.00 0.00 0.00 3.10
4080 4283 8.561738 TCGGTTTATTTTTCTAAGCATCTCTT 57.438 30.769 0.00 0.00 38.79 2.85
4081 4284 9.661563 TCGGTTTATTTTTCTAAGCATCTCTTA 57.338 29.630 0.00 0.00 36.25 2.10
4088 4291 7.686438 TTTTCTAAGCATCTCTTATTGTGCA 57.314 32.000 0.00 0.00 39.94 4.57
4089 4292 7.686438 TTTCTAAGCATCTCTTATTGTGCAA 57.314 32.000 0.00 0.00 39.94 4.08
4090 4293 6.915544 TCTAAGCATCTCTTATTGTGCAAG 57.084 37.500 0.00 0.00 39.94 4.01
4091 4294 4.978083 AAGCATCTCTTATTGTGCAAGG 57.022 40.909 0.00 0.00 39.94 3.61
4092 4295 2.686915 AGCATCTCTTATTGTGCAAGGC 59.313 45.455 0.00 0.00 39.94 4.35
4093 4296 2.223665 GCATCTCTTATTGTGCAAGGCC 60.224 50.000 0.00 0.00 37.52 5.19
4094 4297 3.285484 CATCTCTTATTGTGCAAGGCCT 58.715 45.455 0.00 0.00 0.00 5.19
4095 4298 4.454678 CATCTCTTATTGTGCAAGGCCTA 58.545 43.478 5.16 0.00 0.00 3.93
4096 4299 4.568072 TCTCTTATTGTGCAAGGCCTAA 57.432 40.909 5.16 0.00 0.00 2.69
4097 4300 4.517285 TCTCTTATTGTGCAAGGCCTAAG 58.483 43.478 5.16 3.04 0.00 2.18
4098 4301 4.225042 TCTCTTATTGTGCAAGGCCTAAGA 59.775 41.667 5.16 8.00 0.00 2.10
4099 4302 4.517285 TCTTATTGTGCAAGGCCTAAGAG 58.483 43.478 5.16 0.00 0.00 2.85
4100 4303 1.467920 ATTGTGCAAGGCCTAAGAGC 58.532 50.000 5.16 9.22 0.00 4.09
4101 4304 0.955428 TTGTGCAAGGCCTAAGAGCG 60.955 55.000 5.16 0.00 0.00 5.03
4102 4305 1.376037 GTGCAAGGCCTAAGAGCGT 60.376 57.895 5.16 0.00 0.00 5.07
4103 4306 0.108329 GTGCAAGGCCTAAGAGCGTA 60.108 55.000 5.16 0.00 0.00 4.42
4104 4307 0.108329 TGCAAGGCCTAAGAGCGTAC 60.108 55.000 5.16 0.00 0.00 3.67
4105 4308 1.146358 GCAAGGCCTAAGAGCGTACG 61.146 60.000 5.16 11.84 0.00 3.67
4106 4309 0.454600 CAAGGCCTAAGAGCGTACGA 59.545 55.000 21.65 0.00 0.00 3.43
4107 4310 1.135199 CAAGGCCTAAGAGCGTACGAA 60.135 52.381 21.65 0.00 0.00 3.85
4108 4311 1.400737 AGGCCTAAGAGCGTACGAAT 58.599 50.000 21.65 6.25 0.00 3.34
4109 4312 1.067212 AGGCCTAAGAGCGTACGAATG 59.933 52.381 21.65 1.95 0.00 2.67
4110 4313 1.202382 GGCCTAAGAGCGTACGAATGT 60.202 52.381 21.65 1.59 0.00 2.71
4111 4314 1.852895 GCCTAAGAGCGTACGAATGTG 59.147 52.381 21.65 3.61 0.00 3.21
4112 4315 1.852895 CCTAAGAGCGTACGAATGTGC 59.147 52.381 21.65 0.00 0.00 4.57
4120 4323 2.763930 GTACGAATGTGCGTCAGTTC 57.236 50.000 0.00 0.00 44.39 3.01
4121 4324 2.055838 GTACGAATGTGCGTCAGTTCA 58.944 47.619 0.00 0.00 44.39 3.18
4122 4325 1.795768 ACGAATGTGCGTCAGTTCAT 58.204 45.000 0.00 0.00 41.22 2.57
4123 4326 1.726791 ACGAATGTGCGTCAGTTCATC 59.273 47.619 0.00 0.00 41.22 2.92
4124 4327 1.726248 CGAATGTGCGTCAGTTCATCA 59.274 47.619 0.00 0.00 0.00 3.07
4125 4328 2.222663 CGAATGTGCGTCAGTTCATCAG 60.223 50.000 0.00 0.00 0.00 2.90
4126 4329 2.462456 ATGTGCGTCAGTTCATCAGT 57.538 45.000 0.00 0.00 0.00 3.41
4127 4330 2.238942 TGTGCGTCAGTTCATCAGTT 57.761 45.000 0.00 0.00 0.00 3.16
4128 4331 1.866601 TGTGCGTCAGTTCATCAGTTG 59.133 47.619 0.00 0.00 0.00 3.16
4129 4332 1.867233 GTGCGTCAGTTCATCAGTTGT 59.133 47.619 0.00 0.00 0.00 3.32
4130 4333 2.287915 GTGCGTCAGTTCATCAGTTGTT 59.712 45.455 0.00 0.00 0.00 2.83
4131 4334 2.287644 TGCGTCAGTTCATCAGTTGTTG 59.712 45.455 0.00 0.00 0.00 3.33
4132 4335 2.543848 GCGTCAGTTCATCAGTTGTTGA 59.456 45.455 0.00 0.00 40.85 3.18
4133 4336 3.002246 GCGTCAGTTCATCAGTTGTTGAA 59.998 43.478 2.36 2.36 39.77 2.69
4134 4337 4.319766 GCGTCAGTTCATCAGTTGTTGAAT 60.320 41.667 8.41 0.00 39.77 2.57
4135 4338 5.142265 CGTCAGTTCATCAGTTGTTGAATG 58.858 41.667 8.41 8.12 39.77 2.67
4136 4339 5.277490 CGTCAGTTCATCAGTTGTTGAATGT 60.277 40.000 8.41 0.00 39.77 2.71
4137 4340 6.138761 GTCAGTTCATCAGTTGTTGAATGTC 58.861 40.000 8.41 4.25 39.77 3.06
4138 4341 5.821995 TCAGTTCATCAGTTGTTGAATGTCA 59.178 36.000 8.41 0.00 39.77 3.58
4139 4342 6.017687 TCAGTTCATCAGTTGTTGAATGTCAG 60.018 38.462 8.41 0.64 39.77 3.51
4140 4343 5.824624 AGTTCATCAGTTGTTGAATGTCAGT 59.175 36.000 8.41 0.00 39.77 3.41
4141 4344 6.319658 AGTTCATCAGTTGTTGAATGTCAGTT 59.680 34.615 8.41 0.00 39.77 3.16
4142 4345 6.063640 TCATCAGTTGTTGAATGTCAGTTG 57.936 37.500 0.00 0.00 39.77 3.16
4143 4346 4.291540 TCAGTTGTTGAATGTCAGTTGC 57.708 40.909 0.00 0.00 31.34 4.17
4144 4347 3.947196 TCAGTTGTTGAATGTCAGTTGCT 59.053 39.130 0.00 0.00 31.34 3.91
4145 4348 4.035558 TCAGTTGTTGAATGTCAGTTGCTC 59.964 41.667 0.00 0.00 31.34 4.26
4146 4349 3.316308 AGTTGTTGAATGTCAGTTGCTCC 59.684 43.478 0.00 0.00 0.00 4.70
4147 4350 1.872952 TGTTGAATGTCAGTTGCTCCG 59.127 47.619 0.00 0.00 0.00 4.63
4148 4351 1.873591 GTTGAATGTCAGTTGCTCCGT 59.126 47.619 0.00 0.00 0.00 4.69
4149 4352 1.511850 TGAATGTCAGTTGCTCCGTG 58.488 50.000 0.00 0.00 0.00 4.94
4150 4353 0.798776 GAATGTCAGTTGCTCCGTGG 59.201 55.000 0.00 0.00 0.00 4.94
4151 4354 0.108585 AATGTCAGTTGCTCCGTGGT 59.891 50.000 0.00 0.00 0.00 4.16
4152 4355 0.108585 ATGTCAGTTGCTCCGTGGTT 59.891 50.000 0.00 0.00 0.00 3.67
4153 4356 0.531974 TGTCAGTTGCTCCGTGGTTC 60.532 55.000 0.00 0.00 0.00 3.62
4154 4357 0.531974 GTCAGTTGCTCCGTGGTTCA 60.532 55.000 0.00 0.00 0.00 3.18
4155 4358 0.249868 TCAGTTGCTCCGTGGTTCAG 60.250 55.000 0.00 0.00 0.00 3.02
4156 4359 0.532862 CAGTTGCTCCGTGGTTCAGT 60.533 55.000 0.00 0.00 0.00 3.41
4157 4360 0.532862 AGTTGCTCCGTGGTTCAGTG 60.533 55.000 0.00 0.00 0.00 3.66
4158 4361 1.891919 TTGCTCCGTGGTTCAGTGC 60.892 57.895 0.00 0.00 0.00 4.40
4159 4362 2.280797 GCTCCGTGGTTCAGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
4160 4363 2.320587 GCTCCGTGGTTCAGTGCAG 61.321 63.158 0.00 0.00 0.00 4.41
4161 4364 1.367471 CTCCGTGGTTCAGTGCAGA 59.633 57.895 0.00 0.00 0.00 4.26
4162 4365 0.249868 CTCCGTGGTTCAGTGCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
4163 4366 0.396435 TCCGTGGTTCAGTGCAGAAT 59.604 50.000 0.00 0.00 0.00 2.40
4164 4367 1.202758 TCCGTGGTTCAGTGCAGAATT 60.203 47.619 0.00 0.00 0.00 2.17
4165 4368 1.069022 CCGTGGTTCAGTGCAGAATTG 60.069 52.381 0.00 0.00 0.00 2.32
4166 4369 1.603802 CGTGGTTCAGTGCAGAATTGT 59.396 47.619 0.00 0.00 0.00 2.71
4167 4370 2.349817 CGTGGTTCAGTGCAGAATTGTC 60.350 50.000 0.00 0.00 0.00 3.18
4168 4371 1.872952 TGGTTCAGTGCAGAATTGTCG 59.127 47.619 0.00 0.00 0.00 4.35
4169 4372 1.873591 GGTTCAGTGCAGAATTGTCGT 59.126 47.619 0.00 0.00 0.00 4.34
4170 4373 3.064207 GGTTCAGTGCAGAATTGTCGTA 58.936 45.455 0.00 0.00 0.00 3.43
4171 4374 3.123621 GGTTCAGTGCAGAATTGTCGTAG 59.876 47.826 0.00 0.00 0.00 3.51
4172 4375 2.337583 TCAGTGCAGAATTGTCGTAGC 58.662 47.619 0.00 0.00 0.00 3.58
4173 4376 1.394917 CAGTGCAGAATTGTCGTAGCC 59.605 52.381 0.00 0.00 0.00 3.93
4174 4377 0.370273 GTGCAGAATTGTCGTAGCCG 59.630 55.000 0.00 0.00 0.00 5.52
4175 4378 0.037697 TGCAGAATTGTCGTAGCCGT 60.038 50.000 0.00 0.00 35.01 5.68
4176 4379 1.076332 GCAGAATTGTCGTAGCCGTT 58.924 50.000 0.00 0.00 35.01 4.44
4177 4380 2.264813 GCAGAATTGTCGTAGCCGTTA 58.735 47.619 0.00 0.00 35.01 3.18
4178 4381 2.028883 GCAGAATTGTCGTAGCCGTTAC 59.971 50.000 0.00 0.00 35.01 2.50
4179 4382 2.601763 CAGAATTGTCGTAGCCGTTACC 59.398 50.000 0.00 0.00 35.01 2.85
4180 4383 1.929169 GAATTGTCGTAGCCGTTACCC 59.071 52.381 0.00 0.00 35.01 3.69
4181 4384 1.188863 ATTGTCGTAGCCGTTACCCT 58.811 50.000 0.00 0.00 35.01 4.34
4182 4385 1.832883 TTGTCGTAGCCGTTACCCTA 58.167 50.000 0.00 0.00 35.01 3.53
4183 4386 1.832883 TGTCGTAGCCGTTACCCTAA 58.167 50.000 0.00 0.00 35.01 2.69
4184 4387 2.378038 TGTCGTAGCCGTTACCCTAAT 58.622 47.619 0.00 0.00 35.01 1.73
4185 4388 2.760092 TGTCGTAGCCGTTACCCTAATT 59.240 45.455 0.00 0.00 35.01 1.40
4186 4389 3.195396 TGTCGTAGCCGTTACCCTAATTT 59.805 43.478 0.00 0.00 35.01 1.82
4187 4390 4.183865 GTCGTAGCCGTTACCCTAATTTT 58.816 43.478 0.00 0.00 35.01 1.82
4188 4391 4.268644 GTCGTAGCCGTTACCCTAATTTTC 59.731 45.833 0.00 0.00 35.01 2.29
4189 4392 4.160252 TCGTAGCCGTTACCCTAATTTTCT 59.840 41.667 0.00 0.00 35.01 2.52
4190 4393 4.872124 CGTAGCCGTTACCCTAATTTTCTT 59.128 41.667 0.00 0.00 0.00 2.52
4191 4394 5.006068 CGTAGCCGTTACCCTAATTTTCTTC 59.994 44.000 0.00 0.00 0.00 2.87
4192 4395 5.175388 AGCCGTTACCCTAATTTTCTTCT 57.825 39.130 0.00 0.00 0.00 2.85
4193 4396 4.941873 AGCCGTTACCCTAATTTTCTTCTG 59.058 41.667 0.00 0.00 0.00 3.02
4194 4397 4.698780 GCCGTTACCCTAATTTTCTTCTGT 59.301 41.667 0.00 0.00 0.00 3.41
4195 4398 5.182570 GCCGTTACCCTAATTTTCTTCTGTT 59.817 40.000 0.00 0.00 0.00 3.16
4196 4399 6.608610 CCGTTACCCTAATTTTCTTCTGTTG 58.391 40.000 0.00 0.00 0.00 3.33
4197 4400 6.206048 CCGTTACCCTAATTTTCTTCTGTTGT 59.794 38.462 0.00 0.00 0.00 3.32
4198 4401 7.295930 CGTTACCCTAATTTTCTTCTGTTGTC 58.704 38.462 0.00 0.00 0.00 3.18
4199 4402 7.172703 CGTTACCCTAATTTTCTTCTGTTGTCT 59.827 37.037 0.00 0.00 0.00 3.41
4200 4403 8.847196 GTTACCCTAATTTTCTTCTGTTGTCTT 58.153 33.333 0.00 0.00 0.00 3.01
4202 4405 8.622948 ACCCTAATTTTCTTCTGTTGTCTTAG 57.377 34.615 0.00 0.00 0.00 2.18
4203 4406 7.175119 ACCCTAATTTTCTTCTGTTGTCTTAGC 59.825 37.037 0.00 0.00 0.00 3.09
4204 4407 7.174946 CCCTAATTTTCTTCTGTTGTCTTAGCA 59.825 37.037 0.00 0.00 0.00 3.49
4205 4408 8.233190 CCTAATTTTCTTCTGTTGTCTTAGCAG 58.767 37.037 0.00 0.00 38.82 4.24
4206 4409 7.573968 AATTTTCTTCTGTTGTCTTAGCAGT 57.426 32.000 0.00 0.00 38.61 4.40
4207 4410 7.573968 ATTTTCTTCTGTTGTCTTAGCAGTT 57.426 32.000 0.00 0.00 38.61 3.16
4208 4411 5.991328 TTCTTCTGTTGTCTTAGCAGTTG 57.009 39.130 0.00 0.00 38.61 3.16
4209 4412 5.276461 TCTTCTGTTGTCTTAGCAGTTGA 57.724 39.130 0.00 0.00 38.61 3.18
4210 4413 5.858381 TCTTCTGTTGTCTTAGCAGTTGAT 58.142 37.500 0.00 0.00 38.61 2.57
4211 4414 5.928839 TCTTCTGTTGTCTTAGCAGTTGATC 59.071 40.000 0.00 0.00 38.61 2.92
4212 4415 5.213891 TCTGTTGTCTTAGCAGTTGATCA 57.786 39.130 0.00 0.00 38.61 2.92
4213 4416 5.233225 TCTGTTGTCTTAGCAGTTGATCAG 58.767 41.667 0.00 0.00 38.61 2.90
4214 4417 3.748048 TGTTGTCTTAGCAGTTGATCAGC 59.252 43.478 0.50 0.50 0.00 4.26
4215 4418 3.969287 TGTCTTAGCAGTTGATCAGCT 57.031 42.857 6.20 6.20 41.63 4.24
4216 4419 5.171476 GTTGTCTTAGCAGTTGATCAGCTA 58.829 41.667 12.11 11.07 39.55 3.32
4217 4420 4.748892 TGTCTTAGCAGTTGATCAGCTAC 58.251 43.478 12.11 6.72 40.06 3.58
4218 4421 4.464244 TGTCTTAGCAGTTGATCAGCTACT 59.536 41.667 15.65 15.65 40.06 2.57
4226 4429 3.937706 AGTTGATCAGCTACTGAATGTGC 59.062 43.478 10.73 0.00 44.04 4.57
4227 4430 3.615224 TGATCAGCTACTGAATGTGCA 57.385 42.857 0.74 0.00 44.04 4.57
4228 4431 3.528532 TGATCAGCTACTGAATGTGCAG 58.471 45.455 0.74 0.00 44.04 4.41
4230 4433 4.160252 TGATCAGCTACTGAATGTGCAGTA 59.840 41.667 0.74 0.00 46.67 2.74
4237 4440 4.292186 ACTGAATGTGCAGTAATCCAGT 57.708 40.909 0.00 0.00 46.67 4.00
4238 4441 4.005650 ACTGAATGTGCAGTAATCCAGTG 58.994 43.478 0.00 0.00 46.67 3.66
4239 4442 4.005650 CTGAATGTGCAGTAATCCAGTGT 58.994 43.478 0.00 0.00 0.00 3.55
4240 4443 3.752747 TGAATGTGCAGTAATCCAGTGTG 59.247 43.478 0.00 0.00 0.00 3.82
4241 4444 3.701205 ATGTGCAGTAATCCAGTGTGA 57.299 42.857 0.00 0.00 0.00 3.58
4242 4445 2.766313 TGTGCAGTAATCCAGTGTGAC 58.234 47.619 0.00 0.00 0.00 3.67
4243 4446 2.076863 GTGCAGTAATCCAGTGTGACC 58.923 52.381 0.00 0.00 0.00 4.02
4244 4447 1.977854 TGCAGTAATCCAGTGTGACCT 59.022 47.619 0.00 0.00 0.00 3.85
4245 4448 2.289631 TGCAGTAATCCAGTGTGACCTG 60.290 50.000 0.00 0.00 0.00 4.00
4246 4449 2.350522 CAGTAATCCAGTGTGACCTGC 58.649 52.381 0.00 0.00 0.00 4.85
4247 4450 2.027745 CAGTAATCCAGTGTGACCTGCT 60.028 50.000 0.00 0.00 0.00 4.24
4248 4451 2.027745 AGTAATCCAGTGTGACCTGCTG 60.028 50.000 0.00 0.00 0.00 4.41
4249 4452 0.767375 AATCCAGTGTGACCTGCTGT 59.233 50.000 0.00 0.00 0.00 4.40
4250 4453 0.322975 ATCCAGTGTGACCTGCTGTC 59.677 55.000 0.62 0.62 44.72 3.51
4257 4460 4.787871 GACCTGCTGTCAGTTGCT 57.212 55.556 0.93 0.00 43.85 3.91
4258 4461 2.537863 GACCTGCTGTCAGTTGCTC 58.462 57.895 0.93 0.00 43.85 4.26
4259 4462 0.952984 GACCTGCTGTCAGTTGCTCC 60.953 60.000 0.93 0.00 43.85 4.70
4260 4463 2.031516 CCTGCTGTCAGTTGCTCCG 61.032 63.158 0.93 0.00 38.66 4.63
4261 4464 1.301244 CTGCTGTCAGTTGCTCCGT 60.301 57.895 0.93 0.00 35.61 4.69
4262 4465 1.563435 CTGCTGTCAGTTGCTCCGTG 61.563 60.000 0.93 0.00 35.61 4.94
4263 4466 2.320587 GCTGTCAGTTGCTCCGTGG 61.321 63.158 0.93 0.00 0.00 4.94
4264 4467 1.069765 CTGTCAGTTGCTCCGTGGT 59.930 57.895 0.00 0.00 0.00 4.16
4265 4468 0.532862 CTGTCAGTTGCTCCGTGGTT 60.533 55.000 0.00 0.00 0.00 3.67
4266 4469 0.531974 TGTCAGTTGCTCCGTGGTTC 60.532 55.000 0.00 0.00 0.00 3.62
4267 4470 0.531974 GTCAGTTGCTCCGTGGTTCA 60.532 55.000 0.00 0.00 0.00 3.18
4268 4471 0.249868 TCAGTTGCTCCGTGGTTCAG 60.250 55.000 0.00 0.00 0.00 3.02
4269 4472 0.532862 CAGTTGCTCCGTGGTTCAGT 60.533 55.000 0.00 0.00 0.00 3.41
4270 4473 0.532862 AGTTGCTCCGTGGTTCAGTG 60.533 55.000 0.00 0.00 0.00 3.66
4271 4474 1.891919 TTGCTCCGTGGTTCAGTGC 60.892 57.895 0.00 0.00 0.00 4.40
4272 4475 2.280797 GCTCCGTGGTTCAGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
4273 4476 2.320587 GCTCCGTGGTTCAGTGCAG 61.321 63.158 0.00 0.00 0.00 4.41
4274 4477 1.367471 CTCCGTGGTTCAGTGCAGA 59.633 57.895 0.00 0.00 0.00 4.26
4275 4478 0.249868 CTCCGTGGTTCAGTGCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
4276 4479 0.396435 TCCGTGGTTCAGTGCAGAAT 59.604 50.000 0.00 0.00 0.00 2.40
4277 4480 1.202758 TCCGTGGTTCAGTGCAGAATT 60.203 47.619 0.00 0.00 0.00 2.17
4278 4481 1.069022 CCGTGGTTCAGTGCAGAATTG 60.069 52.381 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.135315 CATGTTTCATGCGAACCCCAG 60.135 52.381 8.65 0.00 0.00 4.45
71 72 3.173599 GTGCCACGAATCATGTTTCATG 58.826 45.455 15.11 10.59 0.00 3.07
116 117 6.459848 GCCCAAAGATGATTGAGAGAATTCTG 60.460 42.308 14.00 0.00 32.53 3.02
152 153 0.577269 GCTAGCCATTTACGTGCTCG 59.423 55.000 2.29 6.63 43.34 5.03
179 219 2.410053 GCAACGCTGTTTGTTTGTTTCA 59.590 40.909 0.00 0.00 0.00 2.69
391 480 0.030235 CGTGTCAGTGACGTTGGAGA 59.970 55.000 18.17 0.00 34.95 3.71
423 512 2.257371 GACGTGTAGGTCAGCGCA 59.743 61.111 11.47 0.00 36.91 6.09
450 542 1.725557 GCCCAGACGATAGAGCACGA 61.726 60.000 0.00 0.00 41.38 4.35
454 546 1.008309 GACGCCCAGACGATAGAGC 60.008 63.158 0.00 0.00 41.38 4.09
455 547 1.801771 CTAGACGCCCAGACGATAGAG 59.198 57.143 0.00 0.00 41.38 2.43
457 549 1.532007 GACTAGACGCCCAGACGATAG 59.468 57.143 0.00 0.00 46.19 2.08
464 556 1.153549 GCAAGGACTAGACGCCCAG 60.154 63.158 0.00 0.00 0.00 4.45
470 562 4.048241 AGATAAAGCGCAAGGACTAGAC 57.952 45.455 11.47 0.00 38.28 2.59
471 563 4.037684 GGTAGATAAAGCGCAAGGACTAGA 59.962 45.833 11.47 0.00 38.28 2.43
473 565 3.069158 GGGTAGATAAAGCGCAAGGACTA 59.931 47.826 11.47 4.84 38.28 2.59
474 566 2.158943 GGGTAGATAAAGCGCAAGGACT 60.159 50.000 11.47 5.90 38.28 3.85
476 568 1.140252 GGGGTAGATAAAGCGCAAGGA 59.860 52.381 11.47 0.00 38.28 3.36
478 570 2.622064 AGGGGTAGATAAAGCGCAAG 57.378 50.000 11.47 0.00 43.44 4.01
480 572 3.359695 AAAAGGGGTAGATAAAGCGCA 57.640 42.857 11.47 0.00 32.71 6.09
481 573 3.442625 ACAAAAAGGGGTAGATAAAGCGC 59.557 43.478 0.00 0.00 0.00 5.92
524 616 2.058001 TCAGATCCGCATCGGGTGT 61.058 57.895 5.36 0.00 42.08 4.16
529 621 3.032609 GCCGTCAGATCCGCATCG 61.033 66.667 0.00 0.00 33.75 3.84
564 656 1.214673 ACGGTAGAGGGATCTGTAGCA 59.785 52.381 0.00 0.00 37.17 3.49
1503 1694 2.272146 GAATGCCAAGCCTCCGGA 59.728 61.111 2.93 2.93 0.00 5.14
2487 2680 4.852134 GCCATACATTGCCATCATGTTA 57.148 40.909 0.00 0.00 0.00 2.41
2643 2836 1.337728 CCCACATCAAGCGTGTACTCA 60.338 52.381 0.00 0.00 32.26 3.41
3132 3325 4.414846 AGGGACAAGAATATGAAGATGGCT 59.585 41.667 0.00 0.00 0.00 4.75
3288 3481 0.804544 TAAGCGAATCGGACTTGGCG 60.805 55.000 4.35 0.00 35.31 5.69
3348 3542 4.223923 AGAGAGGAGGACAATGTTACAAGG 59.776 45.833 0.00 0.00 0.00 3.61
3364 3558 4.465660 CAGAAGGAACAGAATGAGAGAGGA 59.534 45.833 0.00 0.00 39.69 3.71
3373 3567 4.640771 TGCTAACCAGAAGGAACAGAAT 57.359 40.909 0.00 0.00 38.69 2.40
3418 3612 7.228308 AGCTGCCTCTAAATTAATCAACTCATC 59.772 37.037 0.00 0.00 0.00 2.92
3460 3658 4.020039 AGACCAACATATAAACCGACACCA 60.020 41.667 0.00 0.00 0.00 4.17
3521 3719 7.847711 TTTTCATCCAAAACTATGAAGGGAA 57.152 32.000 0.00 0.00 34.92 3.97
3560 3758 1.065126 GCCCAGCTCTACACCAGAAAT 60.065 52.381 0.00 0.00 31.12 2.17
3586 3784 9.466497 ACATAAACATAACATTCTGGAACTCAT 57.534 29.630 0.00 0.00 0.00 2.90
3631 3829 4.088648 CGCAACGGAATTAACAGAACATC 58.911 43.478 0.00 0.00 0.00 3.06
3646 3844 0.025001 GAACATGATCGACGCAACGG 59.975 55.000 0.00 0.00 0.00 4.44
3647 3845 0.025001 GGAACATGATCGACGCAACG 59.975 55.000 0.00 0.00 0.00 4.10
3651 3849 1.638467 GCAGGAACATGATCGACGC 59.362 57.895 0.00 0.00 0.00 5.19
3655 3853 2.620251 TTAGGGCAGGAACATGATCG 57.380 50.000 0.00 0.00 0.00 3.69
3665 3863 6.834168 TTACAAGAAAAAGATTAGGGCAGG 57.166 37.500 0.00 0.00 0.00 4.85
3667 3865 9.920946 AGATATTACAAGAAAAAGATTAGGGCA 57.079 29.630 0.00 0.00 0.00 5.36
3689 3889 9.670442 AGGGAAAGGAATAACACATACTAGATA 57.330 33.333 0.00 0.00 0.00 1.98
3690 3890 8.568617 AGGGAAAGGAATAACACATACTAGAT 57.431 34.615 0.00 0.00 0.00 1.98
3702 3905 6.463053 TTCTGGAGAAAGGGAAAGGAATAA 57.537 37.500 0.00 0.00 0.00 1.40
3704 3907 5.339423 TTTCTGGAGAAAGGGAAAGGAAT 57.661 39.130 0.00 0.00 38.94 3.01
3711 3914 8.393959 AGTAGATAAATTTCTGGAGAAAGGGA 57.606 34.615 7.81 0.00 45.87 4.20
3742 3945 5.068723 ACACTAGTTACATTATGAGACGGGG 59.931 44.000 0.00 0.60 0.00 5.73
3743 3946 6.145338 ACACTAGTTACATTATGAGACGGG 57.855 41.667 0.00 0.00 0.00 5.28
3744 3947 6.792326 TGACACTAGTTACATTATGAGACGG 58.208 40.000 0.00 0.00 0.00 4.79
3745 3948 8.683550 TTTGACACTAGTTACATTATGAGACG 57.316 34.615 0.00 0.00 0.00 4.18
3769 3972 9.675464 TCCATCCTATAATGTAAAGACGTTTTT 57.325 29.630 9.22 9.22 36.22 1.94
3770 3973 9.326413 CTCCATCCTATAATGTAAAGACGTTTT 57.674 33.333 0.00 0.00 36.22 2.43
3771 3974 7.931948 CCTCCATCCTATAATGTAAAGACGTTT 59.068 37.037 0.00 0.00 36.22 3.60
3772 3975 7.442656 CCTCCATCCTATAATGTAAAGACGTT 58.557 38.462 0.00 0.00 38.39 3.99
3773 3976 6.014499 CCCTCCATCCTATAATGTAAAGACGT 60.014 42.308 0.00 0.00 0.00 4.34
3774 3977 6.210784 TCCCTCCATCCTATAATGTAAAGACG 59.789 42.308 0.00 0.00 0.00 4.18
3775 3978 7.235812 ACTCCCTCCATCCTATAATGTAAAGAC 59.764 40.741 0.00 0.00 0.00 3.01
3776 3979 7.313731 ACTCCCTCCATCCTATAATGTAAAGA 58.686 38.462 0.00 0.00 0.00 2.52
3777 3980 7.560796 ACTCCCTCCATCCTATAATGTAAAG 57.439 40.000 0.00 0.00 0.00 1.85
3778 3981 8.239478 ACTACTCCCTCCATCCTATAATGTAAA 58.761 37.037 0.00 0.00 0.00 2.01
3779 3982 7.776745 ACTACTCCCTCCATCCTATAATGTAA 58.223 38.462 0.00 0.00 0.00 2.41
3780 3983 7.358255 ACTACTCCCTCCATCCTATAATGTA 57.642 40.000 0.00 0.00 0.00 2.29
3781 3984 6.234404 ACTACTCCCTCCATCCTATAATGT 57.766 41.667 0.00 0.00 0.00 2.71
3782 3985 6.498651 ACAACTACTCCCTCCATCCTATAATG 59.501 42.308 0.00 0.00 0.00 1.90
3783 3986 6.498651 CACAACTACTCCCTCCATCCTATAAT 59.501 42.308 0.00 0.00 0.00 1.28
3784 3987 5.839063 CACAACTACTCCCTCCATCCTATAA 59.161 44.000 0.00 0.00 0.00 0.98
3785 3988 5.394738 CACAACTACTCCCTCCATCCTATA 58.605 45.833 0.00 0.00 0.00 1.31
3786 3989 4.227197 CACAACTACTCCCTCCATCCTAT 58.773 47.826 0.00 0.00 0.00 2.57
3787 3990 3.643237 CACAACTACTCCCTCCATCCTA 58.357 50.000 0.00 0.00 0.00 2.94
3788 3991 2.472029 CACAACTACTCCCTCCATCCT 58.528 52.381 0.00 0.00 0.00 3.24
3789 3992 1.134371 GCACAACTACTCCCTCCATCC 60.134 57.143 0.00 0.00 0.00 3.51
3790 3993 1.834263 AGCACAACTACTCCCTCCATC 59.166 52.381 0.00 0.00 0.00 3.51
3791 3994 1.556911 CAGCACAACTACTCCCTCCAT 59.443 52.381 0.00 0.00 0.00 3.41
3792 3995 0.976641 CAGCACAACTACTCCCTCCA 59.023 55.000 0.00 0.00 0.00 3.86
3793 3996 1.205893 CTCAGCACAACTACTCCCTCC 59.794 57.143 0.00 0.00 0.00 4.30
3794 3997 1.205893 CCTCAGCACAACTACTCCCTC 59.794 57.143 0.00 0.00 0.00 4.30
3795 3998 1.270907 CCTCAGCACAACTACTCCCT 58.729 55.000 0.00 0.00 0.00 4.20
3796 3999 0.391793 GCCTCAGCACAACTACTCCC 60.392 60.000 0.00 0.00 39.53 4.30
3797 4000 0.737715 CGCCTCAGCACAACTACTCC 60.738 60.000 0.00 0.00 39.83 3.85
3798 4001 1.355066 GCGCCTCAGCACAACTACTC 61.355 60.000 0.00 0.00 39.83 2.59
3799 4002 1.374758 GCGCCTCAGCACAACTACT 60.375 57.895 0.00 0.00 39.83 2.57
3800 4003 1.355066 GAGCGCCTCAGCACAACTAC 61.355 60.000 2.29 0.00 39.83 2.73
3801 4004 1.079819 GAGCGCCTCAGCACAACTA 60.080 57.895 2.29 0.00 39.83 2.24
3802 4005 2.358003 GAGCGCCTCAGCACAACT 60.358 61.111 2.29 0.00 39.83 3.16
3803 4006 2.666190 TGAGCGCCTCAGCACAAC 60.666 61.111 2.29 0.00 39.83 3.32
3836 4039 1.860676 GTGAAACTACCACAGCGTGA 58.139 50.000 9.75 0.00 35.23 4.35
3863 4066 1.541147 CCACCAACCATGCTACAACAG 59.459 52.381 0.00 0.00 0.00 3.16
3864 4067 1.143889 TCCACCAACCATGCTACAACA 59.856 47.619 0.00 0.00 0.00 3.33
3893 4096 4.374689 TGAACCTTAGCAACATACCCAA 57.625 40.909 0.00 0.00 0.00 4.12
3901 4104 6.458888 GCCTTAAGATGATGAACCTTAGCAAC 60.459 42.308 3.36 0.00 0.00 4.17
3903 4106 5.126067 GCCTTAAGATGATGAACCTTAGCA 58.874 41.667 3.36 0.00 0.00 3.49
3905 4108 5.934781 AGGCCTTAAGATGATGAACCTTAG 58.065 41.667 0.00 0.00 0.00 2.18
3907 4110 4.870021 AGGCCTTAAGATGATGAACCTT 57.130 40.909 0.00 0.00 0.00 3.50
3909 4112 4.273318 ACAAGGCCTTAAGATGATGAACC 58.727 43.478 20.00 0.00 0.00 3.62
3917 4120 4.599041 TGCATTGTACAAGGCCTTAAGAT 58.401 39.130 34.56 6.82 46.35 2.40
3918 4121 4.027674 TGCATTGTACAAGGCCTTAAGA 57.972 40.909 34.56 17.54 46.35 2.10
3919 4122 4.458989 TCTTGCATTGTACAAGGCCTTAAG 59.541 41.667 34.56 29.64 46.35 1.85
3920 4123 4.402829 TCTTGCATTGTACAAGGCCTTAA 58.597 39.130 34.56 23.69 46.35 1.85
3921 4124 4.027674 TCTTGCATTGTACAAGGCCTTA 57.972 40.909 34.56 21.73 46.35 2.69
3922 4125 2.875296 TCTTGCATTGTACAAGGCCTT 58.125 42.857 34.56 13.78 46.35 4.35
3923 4126 2.584835 TCTTGCATTGTACAAGGCCT 57.415 45.000 34.56 0.00 46.35 5.19
3924 4127 2.736400 GCATCTTGCATTGTACAAGGCC 60.736 50.000 34.56 20.76 46.35 5.19
3925 4128 2.533266 GCATCTTGCATTGTACAAGGC 58.467 47.619 32.34 32.34 46.98 4.35
3937 4140 8.078596 CCTGGTTTATTTATCTAAGCATCTTGC 58.921 37.037 0.00 0.00 45.46 4.01
3938 4141 9.125026 ACCTGGTTTATTTATCTAAGCATCTTG 57.875 33.333 0.00 0.00 0.00 3.02
3939 4142 9.700831 AACCTGGTTTATTTATCTAAGCATCTT 57.299 29.630 6.18 0.00 0.00 2.40
3940 4143 9.700831 AAACCTGGTTTATTTATCTAAGCATCT 57.299 29.630 22.71 0.00 33.70 2.90
3943 4146 8.745590 GGAAAACCTGGTTTATTTATCTAAGCA 58.254 33.333 24.08 0.00 34.43 3.91
3944 4147 8.967918 AGGAAAACCTGGTTTATTTATCTAAGC 58.032 33.333 24.08 6.14 34.43 3.09
3949 4152 9.582431 GCTTAAGGAAAACCTGGTTTATTTATC 57.418 33.333 24.08 16.77 34.43 1.75
3950 4153 9.095700 TGCTTAAGGAAAACCTGGTTTATTTAT 57.904 29.630 24.08 9.11 34.43 1.40
3951 4154 8.361889 GTGCTTAAGGAAAACCTGGTTTATTTA 58.638 33.333 24.08 18.05 34.43 1.40
3952 4155 7.214381 GTGCTTAAGGAAAACCTGGTTTATTT 58.786 34.615 24.08 18.91 34.43 1.40
3953 4156 6.239487 GGTGCTTAAGGAAAACCTGGTTTATT 60.239 38.462 24.08 19.59 34.43 1.40
3954 4157 5.245301 GGTGCTTAAGGAAAACCTGGTTTAT 59.755 40.000 24.08 14.43 34.43 1.40
3955 4158 4.585581 GGTGCTTAAGGAAAACCTGGTTTA 59.414 41.667 24.08 6.44 34.43 2.01
3956 4159 3.386726 GGTGCTTAAGGAAAACCTGGTTT 59.613 43.478 18.84 18.84 37.34 3.27
3957 4160 2.963101 GGTGCTTAAGGAAAACCTGGTT 59.037 45.455 6.18 6.18 0.00 3.67
3958 4161 2.594131 GGTGCTTAAGGAAAACCTGGT 58.406 47.619 4.29 0.00 0.00 4.00
3959 4162 1.539827 CGGTGCTTAAGGAAAACCTGG 59.460 52.381 4.29 0.00 0.00 4.45
3960 4163 1.539827 CCGGTGCTTAAGGAAAACCTG 59.460 52.381 4.29 0.00 0.00 4.00
3961 4164 1.144298 ACCGGTGCTTAAGGAAAACCT 59.856 47.619 6.12 0.00 0.00 3.50
3962 4165 1.268625 CACCGGTGCTTAAGGAAAACC 59.731 52.381 24.02 0.00 0.00 3.27
3963 4166 2.699251 CACCGGTGCTTAAGGAAAAC 57.301 50.000 24.02 0.00 0.00 2.43
3975 4178 4.699637 TCCTGTATAAATAAGCACCGGTG 58.300 43.478 30.66 30.66 0.00 4.94
3976 4179 5.562298 ATCCTGTATAAATAAGCACCGGT 57.438 39.130 0.00 0.00 0.00 5.28
3977 4180 6.812160 GTCTATCCTGTATAAATAAGCACCGG 59.188 42.308 0.00 0.00 0.00 5.28
3978 4181 6.527023 CGTCTATCCTGTATAAATAAGCACCG 59.473 42.308 0.00 0.00 0.00 4.94
3979 4182 6.310711 GCGTCTATCCTGTATAAATAAGCACC 59.689 42.308 0.00 0.00 0.00 5.01
3980 4183 7.091443 AGCGTCTATCCTGTATAAATAAGCAC 58.909 38.462 0.00 0.00 0.00 4.40
3981 4184 7.228314 AGCGTCTATCCTGTATAAATAAGCA 57.772 36.000 0.00 0.00 0.00 3.91
3982 4185 9.635520 TTAAGCGTCTATCCTGTATAAATAAGC 57.364 33.333 0.00 0.00 0.00 3.09
4003 4206 7.837732 TTCTACAGAAGAGACGCTTAGTTAAGC 60.838 40.741 12.72 12.72 44.03 3.09
4004 4207 7.074507 TCTACAGAAGAGACGCTTAGTTAAG 57.925 40.000 0.00 0.00 36.83 1.85
4005 4208 7.444629 TTCTACAGAAGAGACGCTTAGTTAA 57.555 36.000 0.00 0.00 36.83 2.01
4006 4209 7.444629 TTTCTACAGAAGAGACGCTTAGTTA 57.555 36.000 0.00 0.00 36.83 2.24
4007 4210 5.961396 TTCTACAGAAGAGACGCTTAGTT 57.039 39.130 0.00 0.00 36.83 2.24
4008 4211 5.961396 TTTCTACAGAAGAGACGCTTAGT 57.039 39.130 0.00 0.00 36.83 2.24
4009 4212 7.136119 CCTATTTCTACAGAAGAGACGCTTAG 58.864 42.308 0.00 0.00 36.83 2.18
4010 4213 6.459848 GCCTATTTCTACAGAAGAGACGCTTA 60.460 42.308 0.00 0.00 36.83 3.09
4011 4214 5.680151 GCCTATTTCTACAGAAGAGACGCTT 60.680 44.000 0.00 0.00 40.25 4.68
4012 4215 4.202070 GCCTATTTCTACAGAAGAGACGCT 60.202 45.833 5.12 0.00 35.05 5.07
4013 4216 4.045783 GCCTATTTCTACAGAAGAGACGC 58.954 47.826 5.12 0.00 35.05 5.19
4014 4217 5.038033 GTGCCTATTTCTACAGAAGAGACG 58.962 45.833 5.12 0.00 35.05 4.18
4015 4218 5.353111 GGTGCCTATTTCTACAGAAGAGAC 58.647 45.833 5.12 0.00 35.05 3.36
4016 4219 4.098044 CGGTGCCTATTTCTACAGAAGAGA 59.902 45.833 5.12 0.00 35.05 3.10
4017 4220 4.363999 CGGTGCCTATTTCTACAGAAGAG 58.636 47.826 0.00 0.00 35.05 2.85
4018 4221 3.132289 CCGGTGCCTATTTCTACAGAAGA 59.868 47.826 0.00 0.00 35.21 2.87
4019 4222 3.118738 ACCGGTGCCTATTTCTACAGAAG 60.119 47.826 6.12 0.00 35.21 2.85
4020 4223 2.835764 ACCGGTGCCTATTTCTACAGAA 59.164 45.455 6.12 0.00 0.00 3.02
4021 4224 2.167693 CACCGGTGCCTATTTCTACAGA 59.832 50.000 24.02 0.00 0.00 3.41
4022 4225 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
4023 4226 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
4049 4252 9.758651 ATGCTTAGAAAAATAAACCGAGTTTTT 57.241 25.926 7.22 0.00 37.01 1.94
4050 4253 9.406828 GATGCTTAGAAAAATAAACCGAGTTTT 57.593 29.630 7.22 0.00 37.01 2.43
4051 4254 8.793592 AGATGCTTAGAAAAATAAACCGAGTTT 58.206 29.630 7.11 7.11 39.24 2.66
4052 4255 8.336801 AGATGCTTAGAAAAATAAACCGAGTT 57.663 30.769 0.00 0.00 0.00 3.01
4053 4256 7.824779 AGAGATGCTTAGAAAAATAAACCGAGT 59.175 33.333 0.00 0.00 0.00 4.18
4054 4257 8.202745 AGAGATGCTTAGAAAAATAAACCGAG 57.797 34.615 0.00 0.00 0.00 4.63
4055 4258 8.561738 AAGAGATGCTTAGAAAAATAAACCGA 57.438 30.769 0.00 0.00 34.31 4.69
4062 4265 8.742777 TGCACAATAAGAGATGCTTAGAAAAAT 58.257 29.630 0.00 0.00 42.08 1.82
4063 4266 8.109705 TGCACAATAAGAGATGCTTAGAAAAA 57.890 30.769 0.00 0.00 42.08 1.94
4064 4267 7.686438 TGCACAATAAGAGATGCTTAGAAAA 57.314 32.000 0.00 0.00 42.08 2.29
4065 4268 7.148188 CCTTGCACAATAAGAGATGCTTAGAAA 60.148 37.037 0.00 0.00 42.08 2.52
4066 4269 6.317140 CCTTGCACAATAAGAGATGCTTAGAA 59.683 38.462 0.00 0.00 42.08 2.10
4067 4270 5.819379 CCTTGCACAATAAGAGATGCTTAGA 59.181 40.000 0.00 0.00 42.08 2.10
4068 4271 5.505324 GCCTTGCACAATAAGAGATGCTTAG 60.505 44.000 0.00 0.00 42.08 2.18
4069 4272 4.336433 GCCTTGCACAATAAGAGATGCTTA 59.664 41.667 0.00 0.00 42.92 3.09
4070 4273 3.129988 GCCTTGCACAATAAGAGATGCTT 59.870 43.478 0.00 0.00 38.90 3.91
4071 4274 2.686915 GCCTTGCACAATAAGAGATGCT 59.313 45.455 0.00 0.00 38.90 3.79
4072 4275 2.223665 GGCCTTGCACAATAAGAGATGC 60.224 50.000 0.00 0.00 38.59 3.91
4073 4276 3.285484 AGGCCTTGCACAATAAGAGATG 58.715 45.455 0.00 0.00 0.00 2.90
4074 4277 3.659183 AGGCCTTGCACAATAAGAGAT 57.341 42.857 0.00 0.00 0.00 2.75
4075 4278 4.225042 TCTTAGGCCTTGCACAATAAGAGA 59.775 41.667 12.58 0.00 0.00 3.10
4076 4279 4.517285 TCTTAGGCCTTGCACAATAAGAG 58.483 43.478 12.58 0.00 0.00 2.85
4077 4280 4.517285 CTCTTAGGCCTTGCACAATAAGA 58.483 43.478 12.58 10.52 0.00 2.10
4078 4281 3.065925 GCTCTTAGGCCTTGCACAATAAG 59.934 47.826 12.58 5.85 0.00 1.73
4079 4282 3.016736 GCTCTTAGGCCTTGCACAATAA 58.983 45.455 12.58 0.00 0.00 1.40
4080 4283 2.643551 GCTCTTAGGCCTTGCACAATA 58.356 47.619 12.58 0.00 0.00 1.90
4081 4284 1.467920 GCTCTTAGGCCTTGCACAAT 58.532 50.000 12.58 0.00 0.00 2.71
4082 4285 0.955428 CGCTCTTAGGCCTTGCACAA 60.955 55.000 12.58 0.00 0.00 3.33
4083 4286 1.375908 CGCTCTTAGGCCTTGCACA 60.376 57.895 12.58 0.00 0.00 4.57
4084 4287 0.108329 TACGCTCTTAGGCCTTGCAC 60.108 55.000 12.58 0.00 0.00 4.57
4085 4288 0.108329 GTACGCTCTTAGGCCTTGCA 60.108 55.000 12.58 0.00 0.00 4.08
4086 4289 1.146358 CGTACGCTCTTAGGCCTTGC 61.146 60.000 12.58 10.16 0.00 4.01
4087 4290 0.454600 TCGTACGCTCTTAGGCCTTG 59.545 55.000 12.58 4.55 0.00 3.61
4088 4291 1.180029 TTCGTACGCTCTTAGGCCTT 58.820 50.000 12.58 0.00 0.00 4.35
4089 4292 1.067212 CATTCGTACGCTCTTAGGCCT 59.933 52.381 11.78 11.78 0.00 5.19
4090 4293 1.202382 ACATTCGTACGCTCTTAGGCC 60.202 52.381 11.24 0.00 0.00 5.19
4091 4294 1.852895 CACATTCGTACGCTCTTAGGC 59.147 52.381 11.24 0.00 0.00 3.93
4092 4295 1.852895 GCACATTCGTACGCTCTTAGG 59.147 52.381 11.24 0.00 0.00 2.69
4093 4296 1.513178 CGCACATTCGTACGCTCTTAG 59.487 52.381 11.24 0.00 0.00 2.18
4094 4297 1.135603 ACGCACATTCGTACGCTCTTA 60.136 47.619 11.24 0.00 41.36 2.10
4095 4298 0.388134 ACGCACATTCGTACGCTCTT 60.388 50.000 11.24 0.00 41.36 2.85
4096 4299 0.797249 GACGCACATTCGTACGCTCT 60.797 55.000 11.24 0.00 43.42 4.09
4097 4300 1.068832 TGACGCACATTCGTACGCTC 61.069 55.000 11.24 0.00 43.42 5.03
4098 4301 1.071019 CTGACGCACATTCGTACGCT 61.071 55.000 11.24 0.00 43.42 5.07
4099 4302 1.340465 CTGACGCACATTCGTACGC 59.660 57.895 11.24 0.00 43.42 4.42
4100 4303 1.057285 GAACTGACGCACATTCGTACG 59.943 52.381 9.53 9.53 43.42 3.67
4101 4304 2.055838 TGAACTGACGCACATTCGTAC 58.944 47.619 0.00 0.00 43.42 3.67
4102 4305 2.425578 TGAACTGACGCACATTCGTA 57.574 45.000 0.00 0.00 43.42 3.43
4103 4306 1.726791 GATGAACTGACGCACATTCGT 59.273 47.619 0.00 0.00 46.38 3.85
4104 4307 1.726248 TGATGAACTGACGCACATTCG 59.274 47.619 0.00 0.00 0.00 3.34
4105 4308 2.738846 ACTGATGAACTGACGCACATTC 59.261 45.455 0.00 0.00 0.00 2.67
4106 4309 2.771089 ACTGATGAACTGACGCACATT 58.229 42.857 0.00 0.00 0.00 2.71
4107 4310 2.462456 ACTGATGAACTGACGCACAT 57.538 45.000 0.00 0.00 0.00 3.21
4108 4311 1.866601 CAACTGATGAACTGACGCACA 59.133 47.619 0.00 0.00 0.00 4.57
4109 4312 1.867233 ACAACTGATGAACTGACGCAC 59.133 47.619 0.00 0.00 0.00 5.34
4110 4313 2.238942 ACAACTGATGAACTGACGCA 57.761 45.000 0.00 0.00 0.00 5.24
4111 4314 2.543848 TCAACAACTGATGAACTGACGC 59.456 45.455 0.00 0.00 0.00 5.19
4112 4315 4.794248 TTCAACAACTGATGAACTGACG 57.206 40.909 0.00 0.00 32.92 4.35
4113 4316 6.064846 ACATTCAACAACTGATGAACTGAC 57.935 37.500 4.73 0.00 39.16 3.51
4114 4317 5.821995 TGACATTCAACAACTGATGAACTGA 59.178 36.000 4.73 0.00 39.16 3.41
4115 4318 6.063640 TGACATTCAACAACTGATGAACTG 57.936 37.500 4.73 7.29 39.16 3.16
4116 4319 5.824624 ACTGACATTCAACAACTGATGAACT 59.175 36.000 4.73 0.00 39.16 3.01
4117 4320 6.064846 ACTGACATTCAACAACTGATGAAC 57.935 37.500 4.73 0.00 39.16 3.18
4118 4321 6.497437 CAACTGACATTCAACAACTGATGAA 58.503 36.000 5.06 5.06 40.31 2.57
4119 4322 5.506151 GCAACTGACATTCAACAACTGATGA 60.506 40.000 0.00 0.00 32.78 2.92
4120 4323 4.678287 GCAACTGACATTCAACAACTGATG 59.322 41.667 0.00 0.00 32.78 3.07
4121 4324 4.581824 AGCAACTGACATTCAACAACTGAT 59.418 37.500 0.00 0.00 32.78 2.90
4122 4325 3.947196 AGCAACTGACATTCAACAACTGA 59.053 39.130 0.00 0.00 0.00 3.41
4123 4326 4.285292 GAGCAACTGACATTCAACAACTG 58.715 43.478 0.00 0.00 0.00 3.16
4124 4327 3.316308 GGAGCAACTGACATTCAACAACT 59.684 43.478 0.00 0.00 0.00 3.16
4125 4328 3.632189 GGAGCAACTGACATTCAACAAC 58.368 45.455 0.00 0.00 0.00 3.32
4126 4329 2.290367 CGGAGCAACTGACATTCAACAA 59.710 45.455 0.00 0.00 0.00 2.83
4127 4330 1.872952 CGGAGCAACTGACATTCAACA 59.127 47.619 0.00 0.00 0.00 3.33
4128 4331 1.873591 ACGGAGCAACTGACATTCAAC 59.126 47.619 0.00 0.00 0.00 3.18
4129 4332 1.872952 CACGGAGCAACTGACATTCAA 59.127 47.619 0.00 0.00 0.00 2.69
4130 4333 1.511850 CACGGAGCAACTGACATTCA 58.488 50.000 0.00 0.00 0.00 2.57
4131 4334 0.798776 CCACGGAGCAACTGACATTC 59.201 55.000 0.00 0.00 0.00 2.67
4132 4335 0.108585 ACCACGGAGCAACTGACATT 59.891 50.000 0.00 0.00 0.00 2.71
4133 4336 0.108585 AACCACGGAGCAACTGACAT 59.891 50.000 0.00 0.00 0.00 3.06
4134 4337 0.531974 GAACCACGGAGCAACTGACA 60.532 55.000 0.00 0.00 0.00 3.58
4135 4338 0.531974 TGAACCACGGAGCAACTGAC 60.532 55.000 0.00 0.00 0.00 3.51
4136 4339 0.249868 CTGAACCACGGAGCAACTGA 60.250 55.000 0.00 0.00 0.00 3.41
4137 4340 0.532862 ACTGAACCACGGAGCAACTG 60.533 55.000 0.00 0.00 0.00 3.16
4138 4341 0.532862 CACTGAACCACGGAGCAACT 60.533 55.000 0.00 0.00 0.00 3.16
4139 4342 1.941812 CACTGAACCACGGAGCAAC 59.058 57.895 0.00 0.00 0.00 4.17
4140 4343 1.891919 GCACTGAACCACGGAGCAA 60.892 57.895 0.00 0.00 40.33 3.91
4141 4344 2.280797 GCACTGAACCACGGAGCA 60.281 61.111 0.00 0.00 40.33 4.26
4142 4345 2.280797 TGCACTGAACCACGGAGC 60.281 61.111 0.00 0.00 40.84 4.70
4143 4346 0.249868 TTCTGCACTGAACCACGGAG 60.250 55.000 0.00 0.00 0.00 4.63
4144 4347 0.396435 ATTCTGCACTGAACCACGGA 59.604 50.000 0.00 0.00 0.00 4.69
4145 4348 1.069022 CAATTCTGCACTGAACCACGG 60.069 52.381 0.00 0.00 0.00 4.94
4146 4349 1.603802 ACAATTCTGCACTGAACCACG 59.396 47.619 0.00 0.00 0.00 4.94
4147 4350 2.349817 CGACAATTCTGCACTGAACCAC 60.350 50.000 0.00 0.00 0.00 4.16
4148 4351 1.872952 CGACAATTCTGCACTGAACCA 59.127 47.619 0.00 0.00 0.00 3.67
4149 4352 1.873591 ACGACAATTCTGCACTGAACC 59.126 47.619 0.00 0.00 0.00 3.62
4150 4353 3.423645 GCTACGACAATTCTGCACTGAAC 60.424 47.826 0.00 0.00 0.00 3.18
4151 4354 2.736721 GCTACGACAATTCTGCACTGAA 59.263 45.455 0.00 0.00 0.00 3.02
4152 4355 2.337583 GCTACGACAATTCTGCACTGA 58.662 47.619 0.00 0.00 0.00 3.41
4153 4356 1.394917 GGCTACGACAATTCTGCACTG 59.605 52.381 0.00 0.00 0.00 3.66
4154 4357 1.726853 GGCTACGACAATTCTGCACT 58.273 50.000 0.00 0.00 0.00 4.40
4155 4358 0.370273 CGGCTACGACAATTCTGCAC 59.630 55.000 0.00 0.00 44.60 4.57
4156 4359 0.037697 ACGGCTACGACAATTCTGCA 60.038 50.000 0.00 0.00 44.60 4.41
4157 4360 1.076332 AACGGCTACGACAATTCTGC 58.924 50.000 0.00 0.00 44.60 4.26
4158 4361 2.601763 GGTAACGGCTACGACAATTCTG 59.398 50.000 0.00 0.00 44.60 3.02
4159 4362 2.417787 GGGTAACGGCTACGACAATTCT 60.418 50.000 0.00 0.00 44.60 2.40
4160 4363 1.929169 GGGTAACGGCTACGACAATTC 59.071 52.381 0.00 0.00 44.60 2.17
4161 4364 1.551883 AGGGTAACGGCTACGACAATT 59.448 47.619 0.00 0.00 44.60 2.32
4162 4365 1.188863 AGGGTAACGGCTACGACAAT 58.811 50.000 0.00 0.00 44.60 2.71
4163 4366 1.832883 TAGGGTAACGGCTACGACAA 58.167 50.000 0.00 0.00 44.60 3.18
4164 4367 1.832883 TTAGGGTAACGGCTACGACA 58.167 50.000 0.00 0.00 44.60 4.35
4165 4368 3.443099 AATTAGGGTAACGGCTACGAC 57.557 47.619 0.00 0.00 44.60 4.34
4166 4369 4.160252 AGAAAATTAGGGTAACGGCTACGA 59.840 41.667 0.00 0.00 44.60 3.43
4168 4371 6.036844 CAGAAGAAAATTAGGGTAACGGCTAC 59.963 42.308 0.00 0.00 37.60 3.58
4169 4372 6.110707 CAGAAGAAAATTAGGGTAACGGCTA 58.889 40.000 0.00 0.00 37.60 3.93
4170 4373 4.941873 CAGAAGAAAATTAGGGTAACGGCT 59.058 41.667 0.00 0.00 37.60 5.52
4171 4374 4.698780 ACAGAAGAAAATTAGGGTAACGGC 59.301 41.667 0.00 0.00 37.60 5.68
4172 4375 6.206048 ACAACAGAAGAAAATTAGGGTAACGG 59.794 38.462 0.00 0.00 37.60 4.44
4173 4376 7.172703 AGACAACAGAAGAAAATTAGGGTAACG 59.827 37.037 0.00 0.00 37.60 3.18
4174 4377 8.392372 AGACAACAGAAGAAAATTAGGGTAAC 57.608 34.615 0.00 0.00 0.00 2.50
4175 4378 8.990163 AAGACAACAGAAGAAAATTAGGGTAA 57.010 30.769 0.00 0.00 0.00 2.85
4176 4379 9.720769 CTAAGACAACAGAAGAAAATTAGGGTA 57.279 33.333 0.00 0.00 0.00 3.69
4177 4380 7.175119 GCTAAGACAACAGAAGAAAATTAGGGT 59.825 37.037 0.00 0.00 0.00 4.34
4178 4381 7.174946 TGCTAAGACAACAGAAGAAAATTAGGG 59.825 37.037 0.00 0.00 0.00 3.53
4179 4382 8.099364 TGCTAAGACAACAGAAGAAAATTAGG 57.901 34.615 0.00 0.00 0.00 2.69
4180 4383 8.778358 ACTGCTAAGACAACAGAAGAAAATTAG 58.222 33.333 0.00 0.00 35.38 1.73
4181 4384 8.677148 ACTGCTAAGACAACAGAAGAAAATTA 57.323 30.769 0.00 0.00 35.38 1.40
4182 4385 7.573968 ACTGCTAAGACAACAGAAGAAAATT 57.426 32.000 0.00 0.00 35.38 1.82
4183 4386 7.283127 TCAACTGCTAAGACAACAGAAGAAAAT 59.717 33.333 0.00 0.00 35.38 1.82
4184 4387 6.597672 TCAACTGCTAAGACAACAGAAGAAAA 59.402 34.615 0.00 0.00 35.38 2.29
4185 4388 6.112734 TCAACTGCTAAGACAACAGAAGAAA 58.887 36.000 0.00 0.00 35.38 2.52
4186 4389 5.670485 TCAACTGCTAAGACAACAGAAGAA 58.330 37.500 0.00 0.00 35.38 2.52
4187 4390 5.276461 TCAACTGCTAAGACAACAGAAGA 57.724 39.130 0.00 0.00 35.38 2.87
4188 4391 5.698089 TGATCAACTGCTAAGACAACAGAAG 59.302 40.000 0.00 0.00 35.38 2.85
4189 4392 5.610398 TGATCAACTGCTAAGACAACAGAA 58.390 37.500 0.00 0.00 35.38 3.02
4190 4393 5.213891 TGATCAACTGCTAAGACAACAGA 57.786 39.130 0.00 0.00 35.38 3.41
4191 4394 4.142945 GCTGATCAACTGCTAAGACAACAG 60.143 45.833 0.00 0.00 39.73 3.16
4192 4395 3.748048 GCTGATCAACTGCTAAGACAACA 59.252 43.478 0.00 0.00 39.73 3.33
4193 4396 4.333633 GCTGATCAACTGCTAAGACAAC 57.666 45.455 0.00 0.00 39.73 3.32
4202 4405 3.937706 ACATTCAGTAGCTGATCAACTGC 59.062 43.478 17.60 12.52 40.39 4.40
4203 4406 4.201792 GCACATTCAGTAGCTGATCAACTG 60.202 45.833 16.66 16.66 40.39 3.16
4204 4407 3.937706 GCACATTCAGTAGCTGATCAACT 59.062 43.478 3.72 3.72 40.39 3.16
4205 4408 3.686241 TGCACATTCAGTAGCTGATCAAC 59.314 43.478 0.00 0.00 40.39 3.18
4206 4409 3.937079 CTGCACATTCAGTAGCTGATCAA 59.063 43.478 0.00 0.00 40.39 2.57
4207 4410 3.055602 ACTGCACATTCAGTAGCTGATCA 60.056 43.478 0.00 0.00 44.77 2.92
4208 4411 3.529533 ACTGCACATTCAGTAGCTGATC 58.470 45.455 0.00 0.00 44.77 2.92
4209 4412 3.623906 ACTGCACATTCAGTAGCTGAT 57.376 42.857 0.00 0.00 44.77 2.90
4210 4413 4.535526 TTACTGCACATTCAGTAGCTGA 57.464 40.909 0.00 0.00 46.50 4.26
4211 4414 4.272018 GGATTACTGCACATTCAGTAGCTG 59.728 45.833 0.00 0.00 46.50 4.24
4212 4415 4.080919 TGGATTACTGCACATTCAGTAGCT 60.081 41.667 0.00 0.00 46.50 3.32
4213 4416 4.191544 TGGATTACTGCACATTCAGTAGC 58.808 43.478 4.18 0.00 46.50 3.58
4214 4417 5.292834 CACTGGATTACTGCACATTCAGTAG 59.707 44.000 8.71 2.71 46.50 2.57
4215 4418 5.178061 CACTGGATTACTGCACATTCAGTA 58.822 41.667 8.71 0.00 44.77 2.74
4217 4420 4.005650 ACACTGGATTACTGCACATTCAG 58.994 43.478 3.43 3.43 39.86 3.02
4218 4421 3.752747 CACACTGGATTACTGCACATTCA 59.247 43.478 0.00 0.00 0.00 2.57
4219 4422 4.002982 TCACACTGGATTACTGCACATTC 58.997 43.478 0.00 0.00 0.00 2.67
4220 4423 3.753272 GTCACACTGGATTACTGCACATT 59.247 43.478 0.00 0.00 0.00 2.71
4221 4424 3.338249 GTCACACTGGATTACTGCACAT 58.662 45.455 0.00 0.00 0.00 3.21
4222 4425 2.549992 GGTCACACTGGATTACTGCACA 60.550 50.000 0.00 0.00 0.00 4.57
4223 4426 2.076863 GGTCACACTGGATTACTGCAC 58.923 52.381 0.00 0.00 0.00 4.57
4224 4427 1.977854 AGGTCACACTGGATTACTGCA 59.022 47.619 0.00 0.00 0.00 4.41
4225 4428 2.350522 CAGGTCACACTGGATTACTGC 58.649 52.381 0.00 0.00 34.84 4.40
4226 4429 2.027745 AGCAGGTCACACTGGATTACTG 60.028 50.000 0.00 0.00 38.90 2.74
4227 4430 2.027745 CAGCAGGTCACACTGGATTACT 60.028 50.000 0.00 0.00 38.90 2.24
4228 4431 2.289694 ACAGCAGGTCACACTGGATTAC 60.290 50.000 0.00 0.00 38.90 1.89
4229 4432 1.977854 ACAGCAGGTCACACTGGATTA 59.022 47.619 0.00 0.00 38.90 1.75
4230 4433 0.767375 ACAGCAGGTCACACTGGATT 59.233 50.000 0.00 0.00 38.90 3.01
4231 4434 0.322975 GACAGCAGGTCACACTGGAT 59.677 55.000 3.89 0.00 46.19 3.41
4232 4435 1.748403 GACAGCAGGTCACACTGGA 59.252 57.895 3.89 0.00 46.19 3.86
4233 4436 4.368391 GACAGCAGGTCACACTGG 57.632 61.111 3.89 0.00 46.19 4.00
4240 4443 0.952984 GGAGCAACTGACAGCAGGTC 60.953 60.000 14.99 14.99 41.01 3.85
4241 4444 1.072159 GGAGCAACTGACAGCAGGT 59.928 57.895 1.25 0.34 44.73 4.00
4242 4445 2.031516 CGGAGCAACTGACAGCAGG 61.032 63.158 1.25 0.00 46.60 4.85
4244 4447 1.595109 CACGGAGCAACTGACAGCA 60.595 57.895 1.25 0.00 0.00 4.41
4245 4448 2.320587 CCACGGAGCAACTGACAGC 61.321 63.158 1.25 0.00 0.00 4.40
4246 4449 0.532862 AACCACGGAGCAACTGACAG 60.533 55.000 0.00 0.00 0.00 3.51
4247 4450 0.531974 GAACCACGGAGCAACTGACA 60.532 55.000 0.00 0.00 0.00 3.58
4248 4451 0.531974 TGAACCACGGAGCAACTGAC 60.532 55.000 0.00 0.00 0.00 3.51
4249 4452 0.249868 CTGAACCACGGAGCAACTGA 60.250 55.000 0.00 0.00 0.00 3.41
4250 4453 0.532862 ACTGAACCACGGAGCAACTG 60.533 55.000 0.00 0.00 0.00 3.16
4251 4454 0.532862 CACTGAACCACGGAGCAACT 60.533 55.000 0.00 0.00 0.00 3.16
4252 4455 1.941812 CACTGAACCACGGAGCAAC 59.058 57.895 0.00 0.00 0.00 4.17
4253 4456 1.891919 GCACTGAACCACGGAGCAA 60.892 57.895 0.00 0.00 40.33 3.91
4254 4457 2.280797 GCACTGAACCACGGAGCA 60.281 61.111 0.00 0.00 40.33 4.26
4255 4458 2.280797 TGCACTGAACCACGGAGC 60.281 61.111 0.00 0.00 40.84 4.70
4256 4459 0.249868 TTCTGCACTGAACCACGGAG 60.250 55.000 0.00 0.00 0.00 4.63
4257 4460 0.396435 ATTCTGCACTGAACCACGGA 59.604 50.000 0.00 0.00 0.00 4.69
4258 4461 1.069022 CAATTCTGCACTGAACCACGG 60.069 52.381 0.00 0.00 0.00 4.94
4259 4462 2.320805 CAATTCTGCACTGAACCACG 57.679 50.000 0.00 0.00 0.00 4.94
4271 4474 5.576447 AATAAACCCTTACGGCAATTCTG 57.424 39.130 0.00 0.00 33.26 3.02
4272 4475 9.227777 GATATAATAAACCCTTACGGCAATTCT 57.772 33.333 0.00 0.00 33.26 2.40
4273 4476 9.005777 TGATATAATAAACCCTTACGGCAATTC 57.994 33.333 0.00 0.00 33.26 2.17
4274 4477 8.927675 TGATATAATAAACCCTTACGGCAATT 57.072 30.769 0.00 0.00 33.26 2.32
4275 4478 7.120726 GCTGATATAATAAACCCTTACGGCAAT 59.879 37.037 0.00 0.00 33.26 3.56
4276 4479 6.428771 GCTGATATAATAAACCCTTACGGCAA 59.571 38.462 0.00 0.00 33.26 4.52
4277 4480 5.935789 GCTGATATAATAAACCCTTACGGCA 59.064 40.000 0.00 0.00 33.26 5.69
4278 4481 6.171213 AGCTGATATAATAAACCCTTACGGC 58.829 40.000 0.00 0.00 33.26 5.68
4279 4482 8.529476 AGTAGCTGATATAATAAACCCTTACGG 58.471 37.037 0.00 0.00 37.81 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.