Multiple sequence alignment - TraesCS1B01G278800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G278800 chr1B 100.000 2318 0 0 1 2318 487143518 487145835 0.000000e+00 4281.0
1 TraesCS1B01G278800 chr1B 92.350 183 14 0 374 556 28061971 28062153 6.350000e-66 261.0
2 TraesCS1B01G278800 chr1D 90.746 1113 46 17 624 1702 363852382 363853471 0.000000e+00 1432.0
3 TraesCS1B01G278800 chr1D 95.455 66 3 0 308 373 363852250 363852315 3.150000e-19 106.0
4 TraesCS1B01G278800 chr1A 91.867 996 55 10 729 1704 463155197 463156186 0.000000e+00 1367.0
5 TraesCS1B01G278800 chr1A 87.965 565 59 5 1761 2318 463187601 463188163 0.000000e+00 658.0
6 TraesCS1B01G278800 chr2B 93.145 248 16 1 48 295 539532105 539531859 1.690000e-96 363.0
7 TraesCS1B01G278800 chr2B 88.000 225 26 1 366 589 239617126 239616902 4.910000e-67 265.0
8 TraesCS1B01G278800 chr2B 90.000 140 14 0 443 582 232952399 232952538 5.090000e-42 182.0
9 TraesCS1B01G278800 chr7B 93.333 225 10 4 48 271 554176851 554177071 6.180000e-86 327.0
10 TraesCS1B01G278800 chr5D 91.905 210 16 1 373 582 2084721 2084929 2.250000e-75 292.0
11 TraesCS1B01G278800 chr5D 84.286 140 19 3 156 295 547605634 547605498 1.440000e-27 134.0
12 TraesCS1B01G278800 chr5D 90.909 88 8 0 66 153 547605767 547605680 4.050000e-23 119.0
13 TraesCS1B01G278800 chr4A 91.469 211 18 0 373 583 291308527 291308317 8.100000e-75 291.0
14 TraesCS1B01G278800 chr4A 89.773 88 9 0 66 153 621562520 621562433 1.880000e-21 113.0
15 TraesCS1B01G278800 chr3B 91.388 209 18 0 374 582 800856662 800856870 1.050000e-73 287.0
16 TraesCS1B01G278800 chrUn 90.526 190 17 1 396 584 63180703 63180514 1.380000e-62 250.0
17 TraesCS1B01G278800 chrUn 84.286 140 19 3 156 295 68480126 68479990 1.440000e-27 134.0
18 TraesCS1B01G278800 chrUn 89.773 88 9 0 66 153 68480259 68480172 1.880000e-21 113.0
19 TraesCS1B01G278800 chr7A 81.707 164 30 0 2153 2316 138934771 138934608 1.120000e-28 137.0
20 TraesCS1B01G278800 chr2A 90.909 44 4 0 3 46 553478194 553478151 2.490000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G278800 chr1B 487143518 487145835 2317 False 4281 4281 100.0000 1 2318 1 chr1B.!!$F2 2317
1 TraesCS1B01G278800 chr1D 363852250 363853471 1221 False 769 1432 93.1005 308 1702 2 chr1D.!!$F1 1394
2 TraesCS1B01G278800 chr1A 463155197 463156186 989 False 1367 1367 91.8670 729 1704 1 chr1A.!!$F1 975
3 TraesCS1B01G278800 chr1A 463187601 463188163 562 False 658 658 87.9650 1761 2318 1 chr1A.!!$F2 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 590 0.099436 GATTCGCCACTGATTGCACC 59.901 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2200 0.178068 GCTTCCCGTCTTGCTGGATA 59.822 55.0 0.0 0.0 30.42 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.634012 TTTACTACTTGGCATGAGTGGT 57.366 40.909 12.16 12.16 41.06 4.16
22 23 4.634012 TTACTACTTGGCATGAGTGGTT 57.366 40.909 12.65 0.06 39.23 3.67
23 24 5.748670 TTACTACTTGGCATGAGTGGTTA 57.251 39.130 12.65 2.60 39.23 2.85
24 25 4.207891 ACTACTTGGCATGAGTGGTTAG 57.792 45.455 7.45 0.34 35.63 2.34
25 26 1.826385 ACTTGGCATGAGTGGTTAGC 58.174 50.000 7.45 0.00 0.00 3.09
26 27 1.352352 ACTTGGCATGAGTGGTTAGCT 59.648 47.619 7.45 0.00 0.00 3.32
27 28 2.571653 ACTTGGCATGAGTGGTTAGCTA 59.428 45.455 7.45 0.00 0.00 3.32
28 29 3.200825 ACTTGGCATGAGTGGTTAGCTAT 59.799 43.478 7.45 0.00 0.00 2.97
29 30 3.931907 TGGCATGAGTGGTTAGCTATT 57.068 42.857 0.00 0.00 0.00 1.73
30 31 4.235079 TGGCATGAGTGGTTAGCTATTT 57.765 40.909 0.00 0.00 0.00 1.40
31 32 4.199310 TGGCATGAGTGGTTAGCTATTTC 58.801 43.478 0.00 0.00 0.00 2.17
32 33 4.199310 GGCATGAGTGGTTAGCTATTTCA 58.801 43.478 0.00 0.00 0.00 2.69
33 34 4.640201 GGCATGAGTGGTTAGCTATTTCAA 59.360 41.667 0.00 0.00 0.00 2.69
34 35 5.125417 GGCATGAGTGGTTAGCTATTTCAAA 59.875 40.000 0.00 0.00 0.00 2.69
35 36 6.350110 GGCATGAGTGGTTAGCTATTTCAAAA 60.350 38.462 0.00 0.00 0.00 2.44
36 37 7.090173 GCATGAGTGGTTAGCTATTTCAAAAA 58.910 34.615 0.00 0.00 0.00 1.94
37 38 7.062255 GCATGAGTGGTTAGCTATTTCAAAAAC 59.938 37.037 0.00 0.00 0.00 2.43
38 39 7.575414 TGAGTGGTTAGCTATTTCAAAAACA 57.425 32.000 0.00 0.00 0.00 2.83
39 40 8.001881 TGAGTGGTTAGCTATTTCAAAAACAA 57.998 30.769 0.00 0.00 0.00 2.83
40 41 8.637986 TGAGTGGTTAGCTATTTCAAAAACAAT 58.362 29.630 0.00 0.00 0.00 2.71
41 42 8.816640 AGTGGTTAGCTATTTCAAAAACAATG 57.183 30.769 0.00 0.00 0.00 2.82
42 43 8.637986 AGTGGTTAGCTATTTCAAAAACAATGA 58.362 29.630 0.00 0.00 0.00 2.57
43 44 9.255304 GTGGTTAGCTATTTCAAAAACAATGAA 57.745 29.630 0.00 0.00 35.11 2.57
44 45 9.255304 TGGTTAGCTATTTCAAAAACAATGAAC 57.745 29.630 0.00 0.00 36.57 3.18
45 46 9.255304 GGTTAGCTATTTCAAAAACAATGAACA 57.745 29.630 0.00 0.00 36.57 3.18
77 78 6.866480 TCATAACTTTGGAGCATTTCATTCC 58.134 36.000 0.00 0.00 0.00 3.01
78 79 6.436847 TCATAACTTTGGAGCATTTCATTCCA 59.563 34.615 0.00 0.00 39.16 3.53
79 80 5.750352 AACTTTGGAGCATTTCATTCCAT 57.250 34.783 0.00 0.00 40.48 3.41
80 81 5.080969 ACTTTGGAGCATTTCATTCCATG 57.919 39.130 0.00 0.00 40.48 3.66
81 82 4.773674 ACTTTGGAGCATTTCATTCCATGA 59.226 37.500 0.00 0.00 40.48 3.07
82 83 5.424252 ACTTTGGAGCATTTCATTCCATGAT 59.576 36.000 0.00 0.00 40.48 2.45
83 84 6.608405 ACTTTGGAGCATTTCATTCCATGATA 59.392 34.615 0.00 0.00 40.48 2.15
84 85 7.124599 ACTTTGGAGCATTTCATTCCATGATAA 59.875 33.333 0.00 0.00 40.48 1.75
85 86 6.395426 TGGAGCATTTCATTCCATGATAAC 57.605 37.500 0.00 0.00 39.39 1.89
86 87 5.892686 TGGAGCATTTCATTCCATGATAACA 59.107 36.000 0.00 0.00 39.39 2.41
87 88 6.551975 TGGAGCATTTCATTCCATGATAACAT 59.448 34.615 0.00 0.00 39.39 2.71
120 121 8.041829 TCATACATAGAGCTAACGATTAGTCC 57.958 38.462 0.00 0.00 35.66 3.85
121 122 7.883833 TCATACATAGAGCTAACGATTAGTCCT 59.116 37.037 0.00 0.00 35.66 3.85
122 123 6.320494 ACATAGAGCTAACGATTAGTCCTG 57.680 41.667 0.00 0.00 35.66 3.86
123 124 5.828859 ACATAGAGCTAACGATTAGTCCTGT 59.171 40.000 0.00 0.46 35.66 4.00
124 125 6.321690 ACATAGAGCTAACGATTAGTCCTGTT 59.678 38.462 0.00 0.00 35.66 3.16
125 126 5.000012 AGAGCTAACGATTAGTCCTGTTG 58.000 43.478 0.00 0.00 35.66 3.33
126 127 4.463186 AGAGCTAACGATTAGTCCTGTTGT 59.537 41.667 0.00 0.00 35.66 3.32
127 128 5.047235 AGAGCTAACGATTAGTCCTGTTGTT 60.047 40.000 0.00 0.00 35.66 2.83
128 129 6.152323 AGAGCTAACGATTAGTCCTGTTGTTA 59.848 38.462 0.00 0.00 35.66 2.41
129 130 6.098017 AGCTAACGATTAGTCCTGTTGTTAC 58.902 40.000 0.00 0.00 35.66 2.50
130 131 6.071503 AGCTAACGATTAGTCCTGTTGTTACT 60.072 38.462 0.00 0.00 35.66 2.24
131 132 6.589139 GCTAACGATTAGTCCTGTTGTTACTT 59.411 38.462 0.00 0.00 35.66 2.24
132 133 7.201418 GCTAACGATTAGTCCTGTTGTTACTTC 60.201 40.741 0.00 0.00 35.66 3.01
133 134 6.092955 ACGATTAGTCCTGTTGTTACTTCA 57.907 37.500 0.00 0.00 0.00 3.02
134 135 6.157211 ACGATTAGTCCTGTTGTTACTTCAG 58.843 40.000 0.00 1.84 0.00 3.02
135 136 6.157211 CGATTAGTCCTGTTGTTACTTCAGT 58.843 40.000 6.61 0.00 0.00 3.41
136 137 6.645415 CGATTAGTCCTGTTGTTACTTCAGTT 59.355 38.462 6.61 0.00 0.00 3.16
137 138 7.811236 CGATTAGTCCTGTTGTTACTTCAGTTA 59.189 37.037 6.61 0.00 0.00 2.24
138 139 9.141400 GATTAGTCCTGTTGTTACTTCAGTTAG 57.859 37.037 6.61 0.00 0.00 2.34
139 140 6.726490 AGTCCTGTTGTTACTTCAGTTAGA 57.274 37.500 6.61 0.00 0.00 2.10
140 141 6.514063 AGTCCTGTTGTTACTTCAGTTAGAC 58.486 40.000 6.61 6.78 0.00 2.59
141 142 6.324254 AGTCCTGTTGTTACTTCAGTTAGACT 59.676 38.462 9.57 9.57 0.00 3.24
157 158 6.868622 AGTTAGACTGAAGCTATTACAGTGG 58.131 40.000 16.45 0.00 43.49 4.00
158 159 4.130286 AGACTGAAGCTATTACAGTGGC 57.870 45.455 16.45 7.00 43.49 5.01
159 160 3.515502 AGACTGAAGCTATTACAGTGGCA 59.484 43.478 16.45 0.00 43.49 4.92
160 161 4.020218 AGACTGAAGCTATTACAGTGGCAA 60.020 41.667 16.45 0.00 43.49 4.52
161 162 4.848357 ACTGAAGCTATTACAGTGGCAAT 58.152 39.130 12.59 0.00 42.18 3.56
162 163 4.637534 ACTGAAGCTATTACAGTGGCAATG 59.362 41.667 14.15 14.15 42.18 2.82
163 164 3.378112 TGAAGCTATTACAGTGGCAATGC 59.622 43.478 15.76 0.00 0.00 3.56
164 165 3.287867 AGCTATTACAGTGGCAATGCT 57.712 42.857 15.76 1.72 0.00 3.79
165 166 4.422073 AGCTATTACAGTGGCAATGCTA 57.578 40.909 15.76 3.28 0.00 3.49
166 167 4.978099 AGCTATTACAGTGGCAATGCTAT 58.022 39.130 15.76 10.84 0.00 2.97
167 168 4.758674 AGCTATTACAGTGGCAATGCTATG 59.241 41.667 15.76 4.31 0.00 2.23
168 169 4.516698 GCTATTACAGTGGCAATGCTATGT 59.483 41.667 15.76 10.10 0.00 2.29
169 170 5.700832 GCTATTACAGTGGCAATGCTATGTA 59.299 40.000 15.76 9.12 0.00 2.29
170 171 6.204688 GCTATTACAGTGGCAATGCTATGTAA 59.795 38.462 22.21 22.21 36.27 2.41
171 172 6.624352 ATTACAGTGGCAATGCTATGTAAG 57.376 37.500 23.30 6.80 35.78 2.34
172 173 4.220693 ACAGTGGCAATGCTATGTAAGA 57.779 40.909 15.76 0.00 0.00 2.10
173 174 4.785301 ACAGTGGCAATGCTATGTAAGAT 58.215 39.130 15.76 0.00 0.00 2.40
174 175 5.928976 ACAGTGGCAATGCTATGTAAGATA 58.071 37.500 15.76 0.00 0.00 1.98
175 176 6.356556 ACAGTGGCAATGCTATGTAAGATAA 58.643 36.000 15.76 0.00 0.00 1.75
176 177 6.484643 ACAGTGGCAATGCTATGTAAGATAAG 59.515 38.462 15.76 0.00 0.00 1.73
177 178 6.484643 CAGTGGCAATGCTATGTAAGATAAGT 59.515 38.462 4.82 0.00 0.00 2.24
178 179 7.657354 CAGTGGCAATGCTATGTAAGATAAGTA 59.343 37.037 4.82 0.00 0.00 2.24
179 180 8.210946 AGTGGCAATGCTATGTAAGATAAGTAA 58.789 33.333 4.82 0.00 0.00 2.24
180 181 8.499162 GTGGCAATGCTATGTAAGATAAGTAAG 58.501 37.037 4.82 0.00 0.00 2.34
181 182 8.210946 TGGCAATGCTATGTAAGATAAGTAAGT 58.789 33.333 4.82 0.00 0.00 2.24
182 183 8.499162 GGCAATGCTATGTAAGATAAGTAAGTG 58.501 37.037 4.82 0.00 0.00 3.16
183 184 9.261180 GCAATGCTATGTAAGATAAGTAAGTGA 57.739 33.333 0.00 0.00 0.00 3.41
203 204 7.658179 AGTGATAATTATACACATCAAGCCG 57.342 36.000 20.47 0.00 37.05 5.52
204 205 6.650807 AGTGATAATTATACACATCAAGCCGG 59.349 38.462 20.47 0.00 37.05 6.13
205 206 5.411361 TGATAATTATACACATCAAGCCGGC 59.589 40.000 21.89 21.89 0.00 6.13
206 207 1.961793 TTATACACATCAAGCCGGCC 58.038 50.000 26.15 5.07 0.00 6.13
207 208 0.249699 TATACACATCAAGCCGGCCG 60.250 55.000 26.15 21.04 0.00 6.13
208 209 1.966901 ATACACATCAAGCCGGCCGA 61.967 55.000 30.73 21.36 0.00 5.54
209 210 1.966901 TACACATCAAGCCGGCCGAT 61.967 55.000 30.73 22.76 0.00 4.18
210 211 2.514592 ACATCAAGCCGGCCGATG 60.515 61.111 36.81 36.81 41.84 3.84
211 212 2.203056 CATCAAGCCGGCCGATGA 60.203 61.111 36.19 30.51 39.09 2.92
212 213 1.598962 CATCAAGCCGGCCGATGAT 60.599 57.895 36.19 31.12 39.09 2.45
213 214 0.320683 CATCAAGCCGGCCGATGATA 60.321 55.000 36.19 16.36 39.09 2.15
214 215 0.396435 ATCAAGCCGGCCGATGATAA 59.604 50.000 28.57 7.71 31.05 1.75
215 216 0.396435 TCAAGCCGGCCGATGATAAT 59.604 50.000 30.73 0.00 0.00 1.28
216 217 1.621317 TCAAGCCGGCCGATGATAATA 59.379 47.619 30.73 3.27 0.00 0.98
217 218 2.037902 TCAAGCCGGCCGATGATAATAA 59.962 45.455 30.73 2.52 0.00 1.40
218 219 2.811431 CAAGCCGGCCGATGATAATAAA 59.189 45.455 30.73 0.00 0.00 1.40
219 220 3.134574 AGCCGGCCGATGATAATAAAA 57.865 42.857 30.73 0.00 0.00 1.52
220 221 2.812011 AGCCGGCCGATGATAATAAAAC 59.188 45.455 30.73 0.00 0.00 2.43
221 222 2.095415 GCCGGCCGATGATAATAAAACC 60.095 50.000 30.73 0.00 0.00 3.27
222 223 3.142951 CCGGCCGATGATAATAAAACCA 58.857 45.455 30.73 0.00 0.00 3.67
223 224 3.058501 CCGGCCGATGATAATAAAACCAC 60.059 47.826 30.73 0.00 0.00 4.16
224 225 3.363575 CGGCCGATGATAATAAAACCACG 60.364 47.826 24.07 0.00 0.00 4.94
225 226 3.562557 GGCCGATGATAATAAAACCACGT 59.437 43.478 0.00 0.00 0.00 4.49
226 227 4.751098 GGCCGATGATAATAAAACCACGTA 59.249 41.667 0.00 0.00 0.00 3.57
227 228 5.410439 GGCCGATGATAATAAAACCACGTAT 59.590 40.000 0.00 0.00 0.00 3.06
228 229 6.591062 GGCCGATGATAATAAAACCACGTATA 59.409 38.462 0.00 0.00 0.00 1.47
229 230 7.118101 GGCCGATGATAATAAAACCACGTATAA 59.882 37.037 0.00 0.00 0.00 0.98
230 231 8.497554 GCCGATGATAATAAAACCACGTATAAA 58.502 33.333 0.00 0.00 0.00 1.40
261 262 9.890629 AATAAGTACTTAACTCATGCATGAAGA 57.109 29.630 28.39 14.59 37.50 2.87
262 263 9.890629 ATAAGTACTTAACTCATGCATGAAGAA 57.109 29.630 28.39 20.05 37.50 2.52
263 264 7.602517 AGTACTTAACTCATGCATGAAGAAC 57.397 36.000 28.39 18.25 36.18 3.01
264 265 5.536554 ACTTAACTCATGCATGAAGAACG 57.463 39.130 28.39 18.95 36.18 3.95
265 266 4.393062 ACTTAACTCATGCATGAAGAACGG 59.607 41.667 28.39 18.28 36.18 4.44
266 267 1.742761 ACTCATGCATGAAGAACGGG 58.257 50.000 28.39 17.61 36.18 5.28
267 268 0.379669 CTCATGCATGAAGAACGGGC 59.620 55.000 28.39 0.00 36.18 6.13
268 269 1.063006 CATGCATGAAGAACGGGCG 59.937 57.895 22.59 0.00 0.00 6.13
269 270 2.764314 ATGCATGAAGAACGGGCGC 61.764 57.895 0.00 0.00 0.00 6.53
270 271 3.430862 GCATGAAGAACGGGCGCA 61.431 61.111 10.83 0.00 0.00 6.09
271 272 2.787249 CATGAAGAACGGGCGCAG 59.213 61.111 10.83 4.90 0.00 5.18
294 295 4.813526 CGCGCGTCGTGCTCTAGT 62.814 66.667 26.49 0.00 43.27 2.57
295 296 2.945066 GCGCGTCGTGCTCTAGTC 60.945 66.667 22.94 0.00 43.27 2.59
296 297 2.479198 CGCGTCGTGCTCTAGTCA 59.521 61.111 0.00 0.00 43.27 3.41
297 298 1.154282 CGCGTCGTGCTCTAGTCAA 60.154 57.895 0.00 0.00 43.27 3.18
298 299 0.523546 CGCGTCGTGCTCTAGTCAAT 60.524 55.000 0.00 0.00 43.27 2.57
299 300 1.267882 CGCGTCGTGCTCTAGTCAATA 60.268 52.381 0.00 0.00 43.27 1.90
300 301 2.602456 CGCGTCGTGCTCTAGTCAATAT 60.602 50.000 0.00 0.00 43.27 1.28
301 302 2.974536 GCGTCGTGCTCTAGTCAATATC 59.025 50.000 0.00 0.00 41.73 1.63
302 303 3.219189 CGTCGTGCTCTAGTCAATATCG 58.781 50.000 0.00 0.00 0.00 2.92
303 304 2.974536 GTCGTGCTCTAGTCAATATCGC 59.025 50.000 0.00 0.00 0.00 4.58
304 305 1.972640 CGTGCTCTAGTCAATATCGCG 59.027 52.381 0.00 0.00 0.00 5.87
305 306 2.320367 GTGCTCTAGTCAATATCGCGG 58.680 52.381 6.13 0.00 0.00 6.46
306 307 1.269723 TGCTCTAGTCAATATCGCGGG 59.730 52.381 6.13 0.00 0.00 6.13
344 345 4.702612 TCGAGAGAGCTAACAGTTCTGATT 59.297 41.667 6.83 0.90 35.86 2.57
345 346 5.184096 TCGAGAGAGCTAACAGTTCTGATTT 59.816 40.000 6.83 0.00 35.86 2.17
349 350 6.648725 AGAGAGCTAACAGTTCTGATTTTCAC 59.351 38.462 6.83 0.00 35.86 3.18
373 374 1.844497 AGGGGAGTAGTAATTGCACCC 59.156 52.381 0.00 0.00 40.73 4.61
374 375 1.562475 GGGGAGTAGTAATTGCACCCA 59.438 52.381 15.34 0.00 42.74 4.51
375 376 2.421529 GGGGAGTAGTAATTGCACCCAG 60.422 54.545 15.34 0.00 42.74 4.45
376 377 2.238898 GGGAGTAGTAATTGCACCCAGT 59.761 50.000 0.00 0.00 41.05 4.00
377 378 3.270877 GGAGTAGTAATTGCACCCAGTG 58.729 50.000 0.00 0.00 36.51 3.66
378 379 3.270877 GAGTAGTAATTGCACCCAGTGG 58.729 50.000 0.63 0.63 33.64 4.00
379 380 1.743394 GTAGTAATTGCACCCAGTGGC 59.257 52.381 2.61 0.00 33.64 5.01
380 381 0.960364 AGTAATTGCACCCAGTGGCG 60.960 55.000 2.61 0.00 33.64 5.69
381 382 0.958382 GTAATTGCACCCAGTGGCGA 60.958 55.000 2.61 0.00 33.64 5.54
382 383 0.250945 TAATTGCACCCAGTGGCGAA 60.251 50.000 2.61 0.00 33.64 4.70
383 384 0.899717 AATTGCACCCAGTGGCGAAT 60.900 50.000 2.61 0.00 33.64 3.34
384 385 1.597797 ATTGCACCCAGTGGCGAATG 61.598 55.000 2.61 0.00 33.64 2.67
385 386 2.359850 GCACCCAGTGGCGAATGA 60.360 61.111 2.61 0.00 33.64 2.57
386 387 1.971167 GCACCCAGTGGCGAATGAA 60.971 57.895 2.61 0.00 33.64 2.57
387 388 1.875963 CACCCAGTGGCGAATGAAC 59.124 57.895 2.61 0.00 33.59 3.18
388 389 0.606401 CACCCAGTGGCGAATGAACT 60.606 55.000 2.61 0.00 33.59 3.01
389 390 0.606401 ACCCAGTGGCGAATGAACTG 60.606 55.000 2.61 0.00 40.81 3.16
391 392 2.174334 CAGTGGCGAATGAACTGGG 58.826 57.895 0.00 0.00 38.10 4.45
392 393 1.675641 AGTGGCGAATGAACTGGGC 60.676 57.895 0.00 0.00 0.00 5.36
393 394 1.971167 GTGGCGAATGAACTGGGCA 60.971 57.895 0.00 0.00 0.00 5.36
394 395 1.001020 TGGCGAATGAACTGGGCAT 60.001 52.632 0.00 0.00 0.00 4.40
395 396 1.314534 TGGCGAATGAACTGGGCATG 61.315 55.000 0.00 0.00 0.00 4.06
396 397 1.226773 GCGAATGAACTGGGCATGC 60.227 57.895 9.90 9.90 0.00 4.06
397 398 1.660560 GCGAATGAACTGGGCATGCT 61.661 55.000 18.92 0.00 0.00 3.79
398 399 0.813184 CGAATGAACTGGGCATGCTT 59.187 50.000 18.92 3.22 0.00 3.91
399 400 1.203052 CGAATGAACTGGGCATGCTTT 59.797 47.619 18.92 5.88 0.00 3.51
400 401 2.423185 CGAATGAACTGGGCATGCTTTA 59.577 45.455 18.92 0.61 0.00 1.85
401 402 3.119531 CGAATGAACTGGGCATGCTTTAA 60.120 43.478 18.92 0.00 0.00 1.52
402 403 4.440525 CGAATGAACTGGGCATGCTTTAAT 60.441 41.667 18.92 1.31 0.00 1.40
403 404 5.221028 CGAATGAACTGGGCATGCTTTAATA 60.221 40.000 18.92 0.00 0.00 0.98
404 405 5.779529 ATGAACTGGGCATGCTTTAATAG 57.220 39.130 18.92 9.32 0.00 1.73
405 406 3.953612 TGAACTGGGCATGCTTTAATAGG 59.046 43.478 18.92 2.47 0.00 2.57
406 407 2.310538 ACTGGGCATGCTTTAATAGGC 58.689 47.619 18.92 0.00 0.00 3.93
407 408 2.091665 ACTGGGCATGCTTTAATAGGCT 60.092 45.455 18.92 0.00 0.00 4.58
408 409 2.961062 CTGGGCATGCTTTAATAGGCTT 59.039 45.455 18.92 0.00 0.00 4.35
409 410 2.694628 TGGGCATGCTTTAATAGGCTTG 59.305 45.455 18.92 0.00 36.91 4.01
410 411 2.958355 GGGCATGCTTTAATAGGCTTGA 59.042 45.455 18.92 0.00 36.24 3.02
411 412 3.005155 GGGCATGCTTTAATAGGCTTGAG 59.995 47.826 18.92 0.00 36.24 3.02
412 413 3.633986 GGCATGCTTTAATAGGCTTGAGT 59.366 43.478 18.92 0.00 36.24 3.41
413 414 4.261363 GGCATGCTTTAATAGGCTTGAGTC 60.261 45.833 18.92 0.00 36.24 3.36
414 415 4.578105 GCATGCTTTAATAGGCTTGAGTCT 59.422 41.667 11.37 0.00 36.24 3.24
415 416 5.505324 GCATGCTTTAATAGGCTTGAGTCTG 60.505 44.000 11.37 0.00 36.24 3.51
416 417 3.941483 TGCTTTAATAGGCTTGAGTCTGC 59.059 43.478 0.00 0.00 0.00 4.26
421 422 3.397906 GGCTTGAGTCTGCCCTCT 58.602 61.111 14.24 0.00 43.11 3.69
422 423 2.596776 GGCTTGAGTCTGCCCTCTA 58.403 57.895 14.24 0.00 43.11 2.43
423 424 0.463620 GGCTTGAGTCTGCCCTCTAG 59.536 60.000 14.24 0.00 43.11 2.43
424 425 1.479709 GCTTGAGTCTGCCCTCTAGA 58.520 55.000 9.58 0.00 36.73 2.43
425 426 1.827969 GCTTGAGTCTGCCCTCTAGAA 59.172 52.381 9.58 0.00 36.73 2.10
426 427 2.234908 GCTTGAGTCTGCCCTCTAGAAA 59.765 50.000 9.58 0.00 36.73 2.52
427 428 3.118445 GCTTGAGTCTGCCCTCTAGAAAT 60.118 47.826 9.58 0.00 36.73 2.17
428 429 4.440880 CTTGAGTCTGCCCTCTAGAAATG 58.559 47.826 0.00 0.00 36.73 2.32
429 430 2.169352 TGAGTCTGCCCTCTAGAAATGC 59.831 50.000 0.00 0.00 32.50 3.56
430 431 2.169352 GAGTCTGCCCTCTAGAAATGCA 59.831 50.000 9.39 9.39 0.00 3.96
431 432 2.573462 AGTCTGCCCTCTAGAAATGCAA 59.427 45.455 10.58 2.19 0.00 4.08
432 433 3.009473 AGTCTGCCCTCTAGAAATGCAAA 59.991 43.478 10.58 0.00 0.00 3.68
433 434 3.758554 GTCTGCCCTCTAGAAATGCAAAA 59.241 43.478 10.58 1.97 0.00 2.44
434 435 4.400567 GTCTGCCCTCTAGAAATGCAAAAT 59.599 41.667 10.58 0.00 0.00 1.82
435 436 5.590259 GTCTGCCCTCTAGAAATGCAAAATA 59.410 40.000 10.58 0.00 0.00 1.40
436 437 5.824624 TCTGCCCTCTAGAAATGCAAAATAG 59.175 40.000 10.58 0.00 0.00 1.73
437 438 5.754782 TGCCCTCTAGAAATGCAAAATAGA 58.245 37.500 7.76 0.00 0.00 1.98
438 439 6.186957 TGCCCTCTAGAAATGCAAAATAGAA 58.813 36.000 7.76 0.00 0.00 2.10
439 440 6.663093 TGCCCTCTAGAAATGCAAAATAGAAA 59.337 34.615 7.76 0.00 0.00 2.52
440 441 7.342799 TGCCCTCTAGAAATGCAAAATAGAAAT 59.657 33.333 7.76 0.00 0.00 2.17
441 442 8.200120 GCCCTCTAGAAATGCAAAATAGAAATT 58.800 33.333 0.00 0.00 0.00 1.82
481 482 9.899661 ACATGTTTCTAGTAGTATTATGGCAAA 57.100 29.630 0.00 0.00 0.00 3.68
497 498 8.862325 TTATGGCAAATTCTAGACTTCTTTGA 57.138 30.769 15.30 2.48 0.00 2.69
498 499 7.765695 ATGGCAAATTCTAGACTTCTTTGAA 57.234 32.000 15.30 7.15 0.00 2.69
499 500 6.970484 TGGCAAATTCTAGACTTCTTTGAAC 58.030 36.000 15.30 10.00 0.00 3.18
500 501 6.545666 TGGCAAATTCTAGACTTCTTTGAACA 59.454 34.615 15.30 11.58 0.00 3.18
501 502 7.068103 TGGCAAATTCTAGACTTCTTTGAACAA 59.932 33.333 15.30 0.00 0.00 2.83
502 503 7.920682 GGCAAATTCTAGACTTCTTTGAACAAA 59.079 33.333 15.30 0.17 0.00 2.83
503 504 9.301153 GCAAATTCTAGACTTCTTTGAACAAAA 57.699 29.630 15.30 0.00 0.00 2.44
520 521 9.748708 TTGAACAAAAGAATTGAGACTTAATGG 57.251 29.630 0.00 0.00 0.00 3.16
521 522 9.130661 TGAACAAAAGAATTGAGACTTAATGGA 57.869 29.630 0.00 0.00 0.00 3.41
533 534 8.690203 TGAGACTTAATGGATTTTTCTTCACA 57.310 30.769 0.00 0.00 0.00 3.58
534 535 8.567948 TGAGACTTAATGGATTTTTCTTCACAC 58.432 33.333 0.00 0.00 0.00 3.82
535 536 7.886338 AGACTTAATGGATTTTTCTTCACACC 58.114 34.615 0.00 0.00 0.00 4.16
536 537 7.725844 AGACTTAATGGATTTTTCTTCACACCT 59.274 33.333 0.00 0.00 0.00 4.00
537 538 8.250143 ACTTAATGGATTTTTCTTCACACCTT 57.750 30.769 0.00 0.00 0.00 3.50
538 539 8.704668 ACTTAATGGATTTTTCTTCACACCTTT 58.295 29.630 0.00 0.00 0.00 3.11
539 540 8.885494 TTAATGGATTTTTCTTCACACCTTTG 57.115 30.769 0.00 0.00 0.00 2.77
540 541 6.729690 ATGGATTTTTCTTCACACCTTTGA 57.270 33.333 0.00 0.00 0.00 2.69
541 542 5.901552 TGGATTTTTCTTCACACCTTTGAC 58.098 37.500 0.00 0.00 0.00 3.18
542 543 5.656416 TGGATTTTTCTTCACACCTTTGACT 59.344 36.000 0.00 0.00 0.00 3.41
543 544 6.154363 TGGATTTTTCTTCACACCTTTGACTT 59.846 34.615 0.00 0.00 0.00 3.01
544 545 7.041721 GGATTTTTCTTCACACCTTTGACTTT 58.958 34.615 0.00 0.00 0.00 2.66
545 546 7.010460 GGATTTTTCTTCACACCTTTGACTTTG 59.990 37.037 0.00 0.00 0.00 2.77
546 547 6.582677 TTTTCTTCACACCTTTGACTTTGA 57.417 33.333 0.00 0.00 0.00 2.69
547 548 5.818136 TTCTTCACACCTTTGACTTTGAG 57.182 39.130 0.00 0.00 0.00 3.02
548 549 4.843728 TCTTCACACCTTTGACTTTGAGT 58.156 39.130 0.00 0.00 0.00 3.41
549 550 4.876107 TCTTCACACCTTTGACTTTGAGTC 59.124 41.667 1.21 1.21 45.26 3.36
550 551 4.487714 TCACACCTTTGACTTTGAGTCT 57.512 40.909 9.27 0.00 45.27 3.24
551 552 4.191544 TCACACCTTTGACTTTGAGTCTG 58.808 43.478 9.27 2.12 45.27 3.51
552 553 2.945668 ACACCTTTGACTTTGAGTCTGC 59.054 45.455 9.27 0.00 45.27 4.26
553 554 2.291741 CACCTTTGACTTTGAGTCTGCC 59.708 50.000 9.27 0.00 45.27 4.85
554 555 1.882623 CCTTTGACTTTGAGTCTGCCC 59.117 52.381 9.27 0.00 45.27 5.36
555 556 2.487986 CCTTTGACTTTGAGTCTGCCCT 60.488 50.000 9.27 0.00 45.27 5.19
556 557 2.260844 TTGACTTTGAGTCTGCCCTG 57.739 50.000 9.27 0.00 45.27 4.45
557 558 1.131638 TGACTTTGAGTCTGCCCTGT 58.868 50.000 9.27 0.00 45.27 4.00
558 559 2.325484 TGACTTTGAGTCTGCCCTGTA 58.675 47.619 9.27 0.00 45.27 2.74
559 560 2.906389 TGACTTTGAGTCTGCCCTGTAT 59.094 45.455 9.27 0.00 45.27 2.29
560 561 3.327757 TGACTTTGAGTCTGCCCTGTATT 59.672 43.478 9.27 0.00 45.27 1.89
561 562 4.202461 TGACTTTGAGTCTGCCCTGTATTT 60.202 41.667 9.27 0.00 45.27 1.40
562 563 4.729868 ACTTTGAGTCTGCCCTGTATTTT 58.270 39.130 0.00 0.00 0.00 1.82
563 564 4.762251 ACTTTGAGTCTGCCCTGTATTTTC 59.238 41.667 0.00 0.00 0.00 2.29
564 565 3.350219 TGAGTCTGCCCTGTATTTTCC 57.650 47.619 0.00 0.00 0.00 3.13
565 566 2.912956 TGAGTCTGCCCTGTATTTTCCT 59.087 45.455 0.00 0.00 0.00 3.36
566 567 3.055094 TGAGTCTGCCCTGTATTTTCCTC 60.055 47.826 0.00 0.00 0.00 3.71
567 568 2.239907 AGTCTGCCCTGTATTTTCCTCC 59.760 50.000 0.00 0.00 0.00 4.30
568 569 1.209504 TCTGCCCTGTATTTTCCTCCG 59.790 52.381 0.00 0.00 0.00 4.63
569 570 1.209504 CTGCCCTGTATTTTCCTCCGA 59.790 52.381 0.00 0.00 0.00 4.55
570 571 1.209504 TGCCCTGTATTTTCCTCCGAG 59.790 52.381 0.00 0.00 0.00 4.63
571 572 1.485066 GCCCTGTATTTTCCTCCGAGA 59.515 52.381 0.00 0.00 0.00 4.04
572 573 2.104963 GCCCTGTATTTTCCTCCGAGAT 59.895 50.000 0.00 0.00 0.00 2.75
573 574 3.433740 GCCCTGTATTTTCCTCCGAGATT 60.434 47.826 0.00 0.00 0.00 2.40
574 575 4.381411 CCCTGTATTTTCCTCCGAGATTC 58.619 47.826 0.00 0.00 0.00 2.52
575 576 4.051922 CCTGTATTTTCCTCCGAGATTCG 58.948 47.826 0.00 0.00 40.07 3.34
576 577 3.454375 TGTATTTTCCTCCGAGATTCGC 58.546 45.455 0.00 0.00 38.82 4.70
577 578 1.954927 ATTTTCCTCCGAGATTCGCC 58.045 50.000 0.00 0.00 38.82 5.54
578 579 0.611200 TTTTCCTCCGAGATTCGCCA 59.389 50.000 0.00 0.00 38.82 5.69
579 580 0.108329 TTTCCTCCGAGATTCGCCAC 60.108 55.000 0.00 0.00 38.82 5.01
580 581 0.970937 TTCCTCCGAGATTCGCCACT 60.971 55.000 0.00 0.00 38.82 4.00
581 582 1.227089 CCTCCGAGATTCGCCACTG 60.227 63.158 0.00 0.00 38.82 3.66
582 583 1.667154 CCTCCGAGATTCGCCACTGA 61.667 60.000 0.00 0.00 38.82 3.41
583 584 0.387202 CTCCGAGATTCGCCACTGAT 59.613 55.000 0.00 0.00 38.82 2.90
584 585 0.824109 TCCGAGATTCGCCACTGATT 59.176 50.000 0.00 0.00 38.82 2.57
585 586 0.933097 CCGAGATTCGCCACTGATTG 59.067 55.000 0.00 0.00 38.82 2.67
586 587 0.302890 CGAGATTCGCCACTGATTGC 59.697 55.000 0.00 0.00 31.14 3.56
587 588 1.372582 GAGATTCGCCACTGATTGCA 58.627 50.000 0.00 0.00 0.00 4.08
588 589 1.063174 GAGATTCGCCACTGATTGCAC 59.937 52.381 0.00 0.00 0.00 4.57
589 590 0.099436 GATTCGCCACTGATTGCACC 59.901 55.000 0.00 0.00 0.00 5.01
594 595 1.369091 GCCACTGATTGCACCTACCG 61.369 60.000 0.00 0.00 0.00 4.02
603 604 1.227380 GCACCTACCGCATCTCCAG 60.227 63.158 0.00 0.00 0.00 3.86
609 610 4.038763 CACCTACCGCATCTCCAGTTAATA 59.961 45.833 0.00 0.00 0.00 0.98
619 620 7.328249 CGCATCTCCAGTTAATAATCTTCTCTC 59.672 40.741 0.00 0.00 0.00 3.20
621 622 9.912634 CATCTCCAGTTAATAATCTTCTCTCTC 57.087 37.037 0.00 0.00 0.00 3.20
642 676 4.380531 TCTGAGGAGCTATTAAAATGCGG 58.619 43.478 0.00 0.00 0.00 5.69
645 679 3.477530 AGGAGCTATTAAAATGCGGGAC 58.522 45.455 0.00 0.00 0.00 4.46
649 683 3.821033 AGCTATTAAAATGCGGGACATCC 59.179 43.478 0.00 0.00 38.34 3.51
659 693 1.480954 GCGGGACATCCTTCAGAGTTA 59.519 52.381 0.00 0.00 35.95 2.24
665 707 5.338381 GGGACATCCTTCAGAGTTATTGTGA 60.338 44.000 0.00 0.00 35.95 3.58
675 717 6.223852 TCAGAGTTATTGTGAAGTGAACCTC 58.776 40.000 0.00 0.00 0.00 3.85
689 731 5.794894 AGTGAACCTCTCAAAATCGTGTAT 58.205 37.500 0.00 0.00 35.22 2.29
690 732 6.231211 AGTGAACCTCTCAAAATCGTGTATT 58.769 36.000 0.00 0.00 35.22 1.89
691 733 6.369065 AGTGAACCTCTCAAAATCGTGTATTC 59.631 38.462 0.00 0.00 35.22 1.75
692 734 6.369065 GTGAACCTCTCAAAATCGTGTATTCT 59.631 38.462 0.00 0.00 35.22 2.40
760 815 2.436646 CGTGGGTCATGGACTGCC 60.437 66.667 0.00 0.00 32.47 4.85
811 866 5.335127 CAATTTGCTACAGTGCTGGATTAC 58.665 41.667 4.11 0.00 34.19 1.89
917 978 3.056536 AGCGCTTTGTAGAAGACAGATCA 60.057 43.478 2.64 0.00 39.88 2.92
933 994 4.525487 ACAGATCAAAAACCATCACATGCT 59.475 37.500 0.00 0.00 0.00 3.79
935 996 4.525487 AGATCAAAAACCATCACATGCTGT 59.475 37.500 0.00 0.00 0.00 4.40
970 1036 1.142748 CTCGGCCTGTGACTCCATC 59.857 63.158 0.00 0.00 0.00 3.51
1131 1200 1.813513 ACTTCATCAACTGCCTTCGG 58.186 50.000 0.00 0.00 0.00 4.30
1278 1350 1.227380 GAAGGTCGCCGAGATGCAT 60.227 57.895 0.00 0.00 0.00 3.96
1378 1450 2.202557 CGCGATGTGCTGGTCGTA 60.203 61.111 0.00 0.00 43.27 3.43
1380 1452 1.811217 CGCGATGTGCTGGTCGTATG 61.811 60.000 0.00 0.00 43.27 2.39
1453 1531 3.273434 TCTTTGAATGCTCTTCATCCGG 58.727 45.455 0.00 0.00 33.40 5.14
1482 1560 1.047801 GGACAAAGGTGGCATGGTTT 58.952 50.000 0.00 0.00 32.51 3.27
1498 1576 5.575957 CATGGTTTCTATCATGTGAGTTGC 58.424 41.667 0.00 0.00 36.82 4.17
1502 1580 5.645497 GGTTTCTATCATGTGAGTTGCTCTT 59.355 40.000 0.00 0.00 0.00 2.85
1542 1620 6.151144 GCTAGATTGTTATGGGTCAGTTTGTT 59.849 38.462 0.00 0.00 0.00 2.83
1570 1648 6.486320 TCACAGTGTCTTCTTCAAAATATGCA 59.514 34.615 0.00 0.00 0.00 3.96
1572 1650 7.272731 CACAGTGTCTTCTTCAAAATATGCATG 59.727 37.037 10.16 0.00 0.00 4.06
1577 1655 9.195411 TGTCTTCTTCAAAATATGCATGTTTTC 57.805 29.630 25.75 15.13 30.23 2.29
1612 1691 4.225042 TGGGTGCAGTTAACTGATCTGTAT 59.775 41.667 34.43 0.00 46.59 2.29
1630 1717 7.089770 TCTGTATTATGAGTATCCGATCTGC 57.910 40.000 0.00 0.00 0.00 4.26
1666 1753 8.746751 CACGCATGTAACTGATATATACTATGC 58.253 37.037 0.00 0.00 34.47 3.14
1676 1763 8.191446 ACTGATATATACTATGCGTGTCATTCC 58.809 37.037 0.00 0.00 36.63 3.01
1729 1816 8.512966 TGAGCATCATCCTATATACTACTCAC 57.487 38.462 0.00 0.00 42.56 3.51
1730 1817 7.281100 TGAGCATCATCCTATATACTACTCACG 59.719 40.741 0.00 0.00 42.56 4.35
1731 1818 7.339482 AGCATCATCCTATATACTACTCACGA 58.661 38.462 0.00 0.00 0.00 4.35
1732 1819 7.497579 AGCATCATCCTATATACTACTCACGAG 59.502 40.741 0.00 0.00 0.00 4.18
1733 1820 7.281324 GCATCATCCTATATACTACTCACGAGT 59.719 40.741 4.87 4.87 45.02 4.18
1734 1821 9.819267 CATCATCCTATATACTACTCACGAGTA 57.181 37.037 6.73 6.73 42.54 2.59
1746 1833 4.876125 ACTCACGAGTAGCATTCCATATG 58.124 43.478 0.00 0.00 40.43 1.78
1747 1834 4.240888 CTCACGAGTAGCATTCCATATGG 58.759 47.826 16.25 16.25 0.00 2.74
1748 1835 3.895041 TCACGAGTAGCATTCCATATGGA 59.105 43.478 20.98 20.98 43.73 3.41
1785 1872 4.998672 TGTAGTTGTGTAAAGTATGGCACC 59.001 41.667 0.00 0.00 0.00 5.01
1787 1874 3.073946 AGTTGTGTAAAGTATGGCACCCT 59.926 43.478 0.00 0.00 0.00 4.34
1793 1880 7.579105 TGTGTAAAGTATGGCACCCTAATTAT 58.421 34.615 0.00 0.00 0.00 1.28
1798 1885 7.873699 AAGTATGGCACCCTAATTATAGACT 57.126 36.000 0.00 0.00 0.00 3.24
1801 1888 4.714632 TGGCACCCTAATTATAGACTTGC 58.285 43.478 0.00 0.00 32.00 4.01
1808 1895 6.541278 ACCCTAATTATAGACTTGCGGTTTTC 59.459 38.462 0.00 0.00 0.00 2.29
1817 1904 4.750598 AGACTTGCGGTTTTCTAGAAGAAC 59.249 41.667 5.12 12.17 33.26 3.01
1824 1911 7.833786 TGCGGTTTTCTAGAAGAACTATAGAA 58.166 34.615 20.23 4.27 33.26 2.10
1863 1950 8.910666 TGCGAAAACACATGTAAATTTATTCAG 58.089 29.630 0.00 0.00 0.00 3.02
1864 1951 9.123709 GCGAAAACACATGTAAATTTATTCAGA 57.876 29.630 0.00 0.00 0.00 3.27
1868 1955 9.825972 AAACACATGTAAATTTATTCAGACTCG 57.174 29.630 0.00 0.00 0.00 4.18
1876 1963 4.944962 TTTATTCAGACTCGCAACCATG 57.055 40.909 0.00 0.00 0.00 3.66
1877 1964 1.742761 ATTCAGACTCGCAACCATGG 58.257 50.000 11.19 11.19 0.00 3.66
1880 1967 1.376424 AGACTCGCAACCATGGCAG 60.376 57.895 13.04 5.55 0.00 4.85
1881 1968 1.375908 GACTCGCAACCATGGCAGA 60.376 57.895 13.04 5.27 0.00 4.26
1884 1971 1.224075 CTCGCAACCATGGCAGATAG 58.776 55.000 13.04 0.18 0.00 2.08
1889 1976 2.954318 GCAACCATGGCAGATAGATTGT 59.046 45.455 13.04 0.00 0.00 2.71
1894 1984 6.445451 ACCATGGCAGATAGATTGTAGATT 57.555 37.500 13.04 0.00 0.00 2.40
1916 2006 9.525826 AGATTCAAGATCCAAGAAATTACAAGT 57.474 29.630 0.00 0.00 0.00 3.16
1964 2055 5.482908 TGAAATCTCTTGTAGACAGCTTCC 58.517 41.667 0.00 0.00 36.93 3.46
1965 2056 4.479786 AATCTCTTGTAGACAGCTTCCC 57.520 45.455 0.00 0.00 36.93 3.97
1984 2075 3.009695 TCCCCGTGGTATCAATCTTTGTT 59.990 43.478 0.00 0.00 0.00 2.83
1991 2082 6.511767 CGTGGTATCAATCTTTGTTAGATGGC 60.512 42.308 0.00 0.00 42.90 4.40
1995 2086 8.725148 GGTATCAATCTTTGTTAGATGGCATAG 58.275 37.037 0.00 0.00 42.90 2.23
1997 2088 5.237127 TCAATCTTTGTTAGATGGCATAGCG 59.763 40.000 0.00 0.00 42.90 4.26
2027 2118 7.873739 ACTTTTGTAAATAGAGTGCAATTGC 57.126 32.000 23.69 23.69 42.50 3.56
2063 2154 1.689984 TGCAACTCATTCACCTGCAA 58.310 45.000 0.00 0.00 39.91 4.08
2064 2155 1.610038 TGCAACTCATTCACCTGCAAG 59.390 47.619 0.00 0.00 39.91 4.01
2076 2167 5.689383 TCACCTGCAAGAACTTTATCAAC 57.311 39.130 0.00 0.00 34.07 3.18
2081 2172 8.081633 CACCTGCAAGAACTTTATCAACAATAA 58.918 33.333 0.00 0.00 34.07 1.40
2106 2200 3.983044 ATCTAAAACCTTGAGTCGCCT 57.017 42.857 0.00 0.00 0.00 5.52
2112 2206 1.115467 ACCTTGAGTCGCCTATCCAG 58.885 55.000 0.00 0.00 0.00 3.86
2121 2215 1.227674 GCCTATCCAGCAAGACGGG 60.228 63.158 0.00 0.00 34.40 5.28
2151 2245 1.204704 GCAATGAAACTACTTGGGCCC 59.795 52.381 17.59 17.59 0.00 5.80
2215 2309 5.359756 TCATCACCATAATGTCGAGGAAAG 58.640 41.667 0.00 0.00 0.00 2.62
2241 2335 3.430929 CCAACAACCCGGAAAATCAAACA 60.431 43.478 0.73 0.00 0.00 2.83
2244 2338 4.185394 ACAACCCGGAAAATCAAACAAAC 58.815 39.130 0.73 0.00 0.00 2.93
2245 2339 4.184629 CAACCCGGAAAATCAAACAAACA 58.815 39.130 0.73 0.00 0.00 2.83
2266 2360 6.699575 ACAAAAGCAACAAGAGACAATAGT 57.300 33.333 0.00 0.00 0.00 2.12
2283 2377 9.761504 AGACAATAGTATGAACTCATCAGATTG 57.238 33.333 13.52 13.52 42.53 2.67
2293 2387 9.636789 ATGAACTCATCAGATTGGAATAATTGA 57.363 29.630 0.00 0.00 42.53 2.57
2309 2403 0.032130 TTGACTCTGCGAGGACACAC 59.968 55.000 9.75 0.00 33.35 3.82
2310 2404 1.106944 TGACTCTGCGAGGACACACA 61.107 55.000 9.75 0.00 33.35 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.634012 ACCACTCATGCCAAGTAGTAAA 57.366 40.909 0.00 0.00 0.00 2.01
1 2 4.634012 AACCACTCATGCCAAGTAGTAA 57.366 40.909 0.00 0.00 0.00 2.24
2 3 4.382685 GCTAACCACTCATGCCAAGTAGTA 60.383 45.833 0.00 0.00 0.00 1.82
3 4 3.619979 GCTAACCACTCATGCCAAGTAGT 60.620 47.826 0.00 0.00 0.00 2.73
4 5 2.939103 GCTAACCACTCATGCCAAGTAG 59.061 50.000 0.00 0.00 0.00 2.57
5 6 2.571653 AGCTAACCACTCATGCCAAGTA 59.428 45.455 0.00 0.00 0.00 2.24
6 7 1.352352 AGCTAACCACTCATGCCAAGT 59.648 47.619 0.00 0.00 0.00 3.16
7 8 2.119801 AGCTAACCACTCATGCCAAG 57.880 50.000 0.00 0.00 0.00 3.61
8 9 3.931907 ATAGCTAACCACTCATGCCAA 57.068 42.857 0.00 0.00 0.00 4.52
9 10 3.931907 AATAGCTAACCACTCATGCCA 57.068 42.857 0.00 0.00 0.00 4.92
10 11 4.199310 TGAAATAGCTAACCACTCATGCC 58.801 43.478 0.00 0.00 0.00 4.40
11 12 5.818136 TTGAAATAGCTAACCACTCATGC 57.182 39.130 0.00 0.00 0.00 4.06
12 13 8.081633 TGTTTTTGAAATAGCTAACCACTCATG 58.918 33.333 0.00 0.00 0.00 3.07
13 14 8.177119 TGTTTTTGAAATAGCTAACCACTCAT 57.823 30.769 0.00 0.00 0.00 2.90
14 15 7.575414 TGTTTTTGAAATAGCTAACCACTCA 57.425 32.000 0.00 0.00 0.00 3.41
15 16 8.915654 CATTGTTTTTGAAATAGCTAACCACTC 58.084 33.333 0.00 0.00 0.00 3.51
16 17 8.637986 TCATTGTTTTTGAAATAGCTAACCACT 58.362 29.630 0.00 0.00 0.00 4.00
17 18 8.810652 TCATTGTTTTTGAAATAGCTAACCAC 57.189 30.769 0.00 0.00 0.00 4.16
18 19 9.255304 GTTCATTGTTTTTGAAATAGCTAACCA 57.745 29.630 0.00 0.00 35.03 3.67
19 20 9.255304 TGTTCATTGTTTTTGAAATAGCTAACC 57.745 29.630 0.00 0.00 35.03 2.85
51 52 8.632679 GGAATGAAATGCTCCAAAGTTATGATA 58.367 33.333 0.00 0.00 0.00 2.15
52 53 7.124599 TGGAATGAAATGCTCCAAAGTTATGAT 59.875 33.333 0.00 0.00 36.30 2.45
53 54 6.436847 TGGAATGAAATGCTCCAAAGTTATGA 59.563 34.615 0.00 0.00 36.30 2.15
54 55 6.632909 TGGAATGAAATGCTCCAAAGTTATG 58.367 36.000 0.00 0.00 36.30 1.90
55 56 6.855763 TGGAATGAAATGCTCCAAAGTTAT 57.144 33.333 0.00 0.00 36.30 1.89
56 57 6.855763 ATGGAATGAAATGCTCCAAAGTTA 57.144 33.333 0.00 0.00 42.41 2.24
57 58 5.750352 ATGGAATGAAATGCTCCAAAGTT 57.250 34.783 0.00 0.00 42.41 2.66
94 95 8.679100 GGACTAATCGTTAGCTCTATGTATGAT 58.321 37.037 0.00 0.00 36.71 2.45
95 96 7.883833 AGGACTAATCGTTAGCTCTATGTATGA 59.116 37.037 0.00 0.00 36.71 2.15
96 97 7.965655 CAGGACTAATCGTTAGCTCTATGTATG 59.034 40.741 0.00 0.00 36.71 2.39
97 98 7.666388 ACAGGACTAATCGTTAGCTCTATGTAT 59.334 37.037 0.00 0.00 36.71 2.29
98 99 6.996879 ACAGGACTAATCGTTAGCTCTATGTA 59.003 38.462 0.00 0.00 36.71 2.29
99 100 5.828859 ACAGGACTAATCGTTAGCTCTATGT 59.171 40.000 0.00 7.82 36.71 2.29
100 101 6.320494 ACAGGACTAATCGTTAGCTCTATG 57.680 41.667 0.00 0.00 36.71 2.23
101 102 6.321690 ACAACAGGACTAATCGTTAGCTCTAT 59.678 38.462 0.00 0.00 36.71 1.98
102 103 5.651139 ACAACAGGACTAATCGTTAGCTCTA 59.349 40.000 0.00 0.00 36.71 2.43
103 104 4.463186 ACAACAGGACTAATCGTTAGCTCT 59.537 41.667 0.00 1.81 36.71 4.09
104 105 4.745649 ACAACAGGACTAATCGTTAGCTC 58.254 43.478 0.00 3.43 36.71 4.09
105 106 4.803098 ACAACAGGACTAATCGTTAGCT 57.197 40.909 0.00 0.00 36.71 3.32
106 107 6.098017 AGTAACAACAGGACTAATCGTTAGC 58.902 40.000 5.14 0.00 36.71 3.09
107 108 7.811236 TGAAGTAACAACAGGACTAATCGTTAG 59.189 37.037 4.02 4.02 39.18 2.34
108 109 7.660112 TGAAGTAACAACAGGACTAATCGTTA 58.340 34.615 0.00 0.00 0.00 3.18
109 110 6.518493 TGAAGTAACAACAGGACTAATCGTT 58.482 36.000 0.00 0.00 0.00 3.85
110 111 6.092955 TGAAGTAACAACAGGACTAATCGT 57.907 37.500 0.00 0.00 0.00 3.73
111 112 6.157211 ACTGAAGTAACAACAGGACTAATCG 58.843 40.000 0.00 0.00 36.17 3.34
112 113 7.964604 AACTGAAGTAACAACAGGACTAATC 57.035 36.000 0.00 0.00 36.17 1.75
113 114 8.867097 TCTAACTGAAGTAACAACAGGACTAAT 58.133 33.333 0.00 0.00 36.17 1.73
114 115 8.139989 GTCTAACTGAAGTAACAACAGGACTAA 58.860 37.037 0.00 0.00 36.17 2.24
115 116 7.504911 AGTCTAACTGAAGTAACAACAGGACTA 59.495 37.037 0.00 0.00 32.98 2.59
116 117 6.324254 AGTCTAACTGAAGTAACAACAGGACT 59.676 38.462 0.00 0.00 36.17 3.85
117 118 6.514063 AGTCTAACTGAAGTAACAACAGGAC 58.486 40.000 0.00 0.00 36.17 3.85
118 119 6.726490 AGTCTAACTGAAGTAACAACAGGA 57.274 37.500 0.00 0.00 36.17 3.86
133 134 6.628398 GCCACTGTAATAGCTTCAGTCTAACT 60.628 42.308 0.00 0.00 39.89 2.24
134 135 5.520649 GCCACTGTAATAGCTTCAGTCTAAC 59.479 44.000 0.00 0.00 39.89 2.34
135 136 5.186992 TGCCACTGTAATAGCTTCAGTCTAA 59.813 40.000 0.00 0.00 39.89 2.10
136 137 4.709886 TGCCACTGTAATAGCTTCAGTCTA 59.290 41.667 0.00 0.00 39.89 2.59
137 138 3.515502 TGCCACTGTAATAGCTTCAGTCT 59.484 43.478 0.00 0.00 39.89 3.24
138 139 3.861840 TGCCACTGTAATAGCTTCAGTC 58.138 45.455 0.00 0.00 39.89 3.51
139 140 3.981071 TGCCACTGTAATAGCTTCAGT 57.019 42.857 0.00 0.00 42.14 3.41
140 141 4.497006 GCATTGCCACTGTAATAGCTTCAG 60.497 45.833 0.00 0.00 35.60 3.02
141 142 3.378112 GCATTGCCACTGTAATAGCTTCA 59.622 43.478 0.00 0.00 0.00 3.02
142 143 3.629398 AGCATTGCCACTGTAATAGCTTC 59.371 43.478 4.70 0.00 31.94 3.86
143 144 3.624777 AGCATTGCCACTGTAATAGCTT 58.375 40.909 4.70 0.00 31.94 3.74
144 145 3.287867 AGCATTGCCACTGTAATAGCT 57.712 42.857 4.70 0.00 31.48 3.32
145 146 4.516698 ACATAGCATTGCCACTGTAATAGC 59.483 41.667 4.70 0.00 0.00 2.97
146 147 7.657354 TCTTACATAGCATTGCCACTGTAATAG 59.343 37.037 19.81 13.57 31.73 1.73
147 148 7.505258 TCTTACATAGCATTGCCACTGTAATA 58.495 34.615 19.81 14.10 31.73 0.98
148 149 6.356556 TCTTACATAGCATTGCCACTGTAAT 58.643 36.000 19.81 0.09 31.73 1.89
149 150 5.739959 TCTTACATAGCATTGCCACTGTAA 58.260 37.500 19.01 19.01 31.48 2.41
150 151 5.351948 TCTTACATAGCATTGCCACTGTA 57.648 39.130 4.70 8.05 0.00 2.74
151 152 4.220693 TCTTACATAGCATTGCCACTGT 57.779 40.909 4.70 9.01 0.00 3.55
152 153 6.484643 ACTTATCTTACATAGCATTGCCACTG 59.515 38.462 4.70 3.23 0.00 3.66
153 154 6.595682 ACTTATCTTACATAGCATTGCCACT 58.404 36.000 4.70 0.00 0.00 4.00
154 155 6.867662 ACTTATCTTACATAGCATTGCCAC 57.132 37.500 4.70 0.00 0.00 5.01
155 156 8.210946 ACTTACTTATCTTACATAGCATTGCCA 58.789 33.333 4.70 0.00 0.00 4.92
156 157 8.499162 CACTTACTTATCTTACATAGCATTGCC 58.501 37.037 4.70 0.00 0.00 4.52
157 158 9.261180 TCACTTACTTATCTTACATAGCATTGC 57.739 33.333 0.00 0.00 0.00 3.56
177 178 9.203421 CGGCTTGATGTGTATAATTATCACTTA 57.797 33.333 19.63 8.69 33.82 2.24
178 179 7.173218 CCGGCTTGATGTGTATAATTATCACTT 59.827 37.037 19.63 15.97 33.82 3.16
179 180 6.650807 CCGGCTTGATGTGTATAATTATCACT 59.349 38.462 19.63 11.16 33.82 3.41
180 181 6.620733 GCCGGCTTGATGTGTATAATTATCAC 60.621 42.308 22.15 10.33 29.96 3.06
181 182 5.411361 GCCGGCTTGATGTGTATAATTATCA 59.589 40.000 22.15 0.00 0.00 2.15
182 183 5.163754 GGCCGGCTTGATGTGTATAATTATC 60.164 44.000 28.56 0.00 0.00 1.75
183 184 4.700213 GGCCGGCTTGATGTGTATAATTAT 59.300 41.667 28.56 2.97 0.00 1.28
184 185 4.069304 GGCCGGCTTGATGTGTATAATTA 58.931 43.478 28.56 0.00 0.00 1.40
185 186 2.884639 GGCCGGCTTGATGTGTATAATT 59.115 45.455 28.56 0.00 0.00 1.40
186 187 2.504367 GGCCGGCTTGATGTGTATAAT 58.496 47.619 28.56 0.00 0.00 1.28
187 188 1.808512 CGGCCGGCTTGATGTGTATAA 60.809 52.381 28.56 0.00 0.00 0.98
188 189 0.249699 CGGCCGGCTTGATGTGTATA 60.250 55.000 28.56 0.00 0.00 1.47
189 190 1.523711 CGGCCGGCTTGATGTGTAT 60.524 57.895 28.56 0.00 0.00 2.29
190 191 1.966901 ATCGGCCGGCTTGATGTGTA 61.967 55.000 28.56 0.12 0.00 2.90
191 192 3.329542 ATCGGCCGGCTTGATGTGT 62.330 57.895 28.56 6.81 0.00 3.72
192 193 2.514592 ATCGGCCGGCTTGATGTG 60.515 61.111 28.56 7.74 0.00 3.21
193 194 2.329539 ATCATCGGCCGGCTTGATGT 62.330 55.000 37.58 28.77 40.25 3.06
194 195 0.320683 TATCATCGGCCGGCTTGATG 60.321 55.000 35.92 35.92 40.61 3.07
195 196 0.396435 TTATCATCGGCCGGCTTGAT 59.604 50.000 29.41 29.41 33.59 2.57
196 197 0.396435 ATTATCATCGGCCGGCTTGA 59.604 50.000 28.56 25.14 0.00 3.02
197 198 2.093306 TATTATCATCGGCCGGCTTG 57.907 50.000 28.56 20.84 0.00 4.01
198 199 2.851263 TTATTATCATCGGCCGGCTT 57.149 45.000 28.56 9.00 0.00 4.35
199 200 2.812011 GTTTTATTATCATCGGCCGGCT 59.188 45.455 28.56 10.71 0.00 5.52
200 201 2.095415 GGTTTTATTATCATCGGCCGGC 60.095 50.000 27.83 21.18 0.00 6.13
201 202 3.058501 GTGGTTTTATTATCATCGGCCGG 60.059 47.826 27.83 10.69 0.00 6.13
202 203 3.363575 CGTGGTTTTATTATCATCGGCCG 60.364 47.826 22.12 22.12 0.00 6.13
203 204 3.562557 ACGTGGTTTTATTATCATCGGCC 59.437 43.478 0.00 0.00 0.00 6.13
204 205 4.806342 ACGTGGTTTTATTATCATCGGC 57.194 40.909 0.00 0.00 0.00 5.54
235 236 9.890629 TCTTCATGCATGAGTTAAGTACTTATT 57.109 29.630 27.25 7.87 37.17 1.40
236 237 9.890629 TTCTTCATGCATGAGTTAAGTACTTAT 57.109 29.630 27.25 2.26 37.17 1.73
237 238 9.151471 GTTCTTCATGCATGAGTTAAGTACTTA 57.849 33.333 27.25 11.38 37.17 2.24
238 239 7.148573 CGTTCTTCATGCATGAGTTAAGTACTT 60.149 37.037 27.25 13.68 37.17 2.24
239 240 6.311445 CGTTCTTCATGCATGAGTTAAGTACT 59.689 38.462 27.25 0.00 40.71 2.73
240 241 6.455646 CCGTTCTTCATGCATGAGTTAAGTAC 60.456 42.308 27.25 22.16 38.19 2.73
241 242 5.580691 CCGTTCTTCATGCATGAGTTAAGTA 59.419 40.000 27.25 14.10 38.19 2.24
242 243 4.393062 CCGTTCTTCATGCATGAGTTAAGT 59.607 41.667 27.25 0.00 38.19 2.24
243 244 4.201851 CCCGTTCTTCATGCATGAGTTAAG 60.202 45.833 27.25 21.55 38.19 1.85
244 245 3.689161 CCCGTTCTTCATGCATGAGTTAA 59.311 43.478 27.25 19.42 38.19 2.01
245 246 3.270027 CCCGTTCTTCATGCATGAGTTA 58.730 45.455 27.25 13.77 38.19 2.24
246 247 2.086869 CCCGTTCTTCATGCATGAGTT 58.913 47.619 27.25 0.00 38.19 3.01
247 248 1.742761 CCCGTTCTTCATGCATGAGT 58.257 50.000 27.25 0.00 38.19 3.41
248 249 0.379669 GCCCGTTCTTCATGCATGAG 59.620 55.000 27.25 20.78 38.19 2.90
249 250 1.368345 CGCCCGTTCTTCATGCATGA 61.368 55.000 25.42 25.42 34.44 3.07
250 251 1.063006 CGCCCGTTCTTCATGCATG 59.937 57.895 21.07 21.07 0.00 4.06
251 252 2.764314 GCGCCCGTTCTTCATGCAT 61.764 57.895 0.00 0.00 0.00 3.96
252 253 3.430862 GCGCCCGTTCTTCATGCA 61.431 61.111 0.00 0.00 0.00 3.96
253 254 3.386867 CTGCGCCCGTTCTTCATGC 62.387 63.158 4.18 0.00 0.00 4.06
254 255 2.787249 CTGCGCCCGTTCTTCATG 59.213 61.111 4.18 0.00 0.00 3.07
255 256 3.127533 GCTGCGCCCGTTCTTCAT 61.128 61.111 4.18 0.00 0.00 2.57
256 257 4.617520 TGCTGCGCCCGTTCTTCA 62.618 61.111 4.18 0.00 0.00 3.02
257 258 3.314388 CTTGCTGCGCCCGTTCTTC 62.314 63.158 4.18 0.00 0.00 2.87
258 259 3.357079 CTTGCTGCGCCCGTTCTT 61.357 61.111 4.18 0.00 0.00 2.52
259 260 4.314440 TCTTGCTGCGCCCGTTCT 62.314 61.111 4.18 0.00 0.00 3.01
260 261 4.090057 GTCTTGCTGCGCCCGTTC 62.090 66.667 4.18 0.00 0.00 3.95
280 281 2.470196 TATTGACTAGAGCACGACGC 57.530 50.000 0.00 0.00 42.91 5.19
281 282 3.219189 CGATATTGACTAGAGCACGACG 58.781 50.000 0.00 0.00 0.00 5.12
282 283 2.974536 GCGATATTGACTAGAGCACGAC 59.025 50.000 0.00 0.00 0.00 4.34
283 284 2.349532 CGCGATATTGACTAGAGCACGA 60.350 50.000 0.00 0.00 0.00 4.35
284 285 1.972640 CGCGATATTGACTAGAGCACG 59.027 52.381 0.00 0.00 0.00 5.34
285 286 2.320367 CCGCGATATTGACTAGAGCAC 58.680 52.381 8.23 0.00 0.00 4.40
286 287 1.269723 CCCGCGATATTGACTAGAGCA 59.730 52.381 8.23 0.00 0.00 4.26
287 288 1.402984 CCCCGCGATATTGACTAGAGC 60.403 57.143 8.23 0.00 0.00 4.09
288 289 1.202582 CCCCCGCGATATTGACTAGAG 59.797 57.143 8.23 0.00 0.00 2.43
289 290 1.254026 CCCCCGCGATATTGACTAGA 58.746 55.000 8.23 0.00 0.00 2.43
290 291 0.389948 GCCCCCGCGATATTGACTAG 60.390 60.000 8.23 0.00 0.00 2.57
291 292 1.669440 GCCCCCGCGATATTGACTA 59.331 57.895 8.23 0.00 0.00 2.59
292 293 2.426023 GCCCCCGCGATATTGACT 59.574 61.111 8.23 0.00 0.00 3.41
344 345 2.005370 ACTACTCCCCTCACGTGAAA 57.995 50.000 20.49 4.67 0.00 2.69
345 346 2.885135 TACTACTCCCCTCACGTGAA 57.115 50.000 20.49 3.36 0.00 3.18
349 350 2.167693 TGCAATTACTACTCCCCTCACG 59.832 50.000 0.00 0.00 0.00 4.35
373 374 1.926511 GCCCAGTTCATTCGCCACTG 61.927 60.000 0.00 0.00 38.14 3.66
374 375 1.675641 GCCCAGTTCATTCGCCACT 60.676 57.895 0.00 0.00 0.00 4.00
375 376 1.315257 ATGCCCAGTTCATTCGCCAC 61.315 55.000 0.00 0.00 0.00 5.01
376 377 1.001020 ATGCCCAGTTCATTCGCCA 60.001 52.632 0.00 0.00 0.00 5.69
377 378 1.434696 CATGCCCAGTTCATTCGCC 59.565 57.895 0.00 0.00 0.00 5.54
378 379 1.226773 GCATGCCCAGTTCATTCGC 60.227 57.895 6.36 0.00 0.00 4.70
379 380 0.813184 AAGCATGCCCAGTTCATTCG 59.187 50.000 15.66 0.00 0.00 3.34
380 381 4.454728 TTAAAGCATGCCCAGTTCATTC 57.545 40.909 15.66 0.00 0.00 2.67
381 382 5.069516 CCTATTAAAGCATGCCCAGTTCATT 59.930 40.000 15.66 0.00 0.00 2.57
382 383 4.586001 CCTATTAAAGCATGCCCAGTTCAT 59.414 41.667 15.66 3.79 0.00 2.57
383 384 3.953612 CCTATTAAAGCATGCCCAGTTCA 59.046 43.478 15.66 0.00 0.00 3.18
384 385 3.243535 GCCTATTAAAGCATGCCCAGTTC 60.244 47.826 15.66 0.00 0.00 3.01
385 386 2.695147 GCCTATTAAAGCATGCCCAGTT 59.305 45.455 15.66 6.42 0.00 3.16
386 387 2.091665 AGCCTATTAAAGCATGCCCAGT 60.092 45.455 15.66 0.00 0.00 4.00
387 388 2.590821 AGCCTATTAAAGCATGCCCAG 58.409 47.619 15.66 2.57 0.00 4.45
388 389 2.694628 CAAGCCTATTAAAGCATGCCCA 59.305 45.455 15.66 0.00 0.00 5.36
389 390 2.958355 TCAAGCCTATTAAAGCATGCCC 59.042 45.455 15.66 0.00 0.00 5.36
390 391 3.633986 ACTCAAGCCTATTAAAGCATGCC 59.366 43.478 15.66 0.00 0.00 4.40
391 392 4.578105 AGACTCAAGCCTATTAAAGCATGC 59.422 41.667 10.51 10.51 0.00 4.06
392 393 5.505324 GCAGACTCAAGCCTATTAAAGCATG 60.505 44.000 0.00 0.00 0.00 4.06
393 394 4.578105 GCAGACTCAAGCCTATTAAAGCAT 59.422 41.667 0.00 0.00 0.00 3.79
394 395 3.941483 GCAGACTCAAGCCTATTAAAGCA 59.059 43.478 0.00 0.00 0.00 3.91
395 396 4.544242 GCAGACTCAAGCCTATTAAAGC 57.456 45.455 0.00 0.00 0.00 3.51
405 406 1.479709 TCTAGAGGGCAGACTCAAGC 58.520 55.000 5.31 0.00 39.97 4.01
406 407 4.440880 CATTTCTAGAGGGCAGACTCAAG 58.559 47.826 0.00 0.00 39.97 3.02
407 408 3.369892 GCATTTCTAGAGGGCAGACTCAA 60.370 47.826 7.29 0.00 39.97 3.02
408 409 2.169352 GCATTTCTAGAGGGCAGACTCA 59.831 50.000 7.29 0.00 39.97 3.41
409 410 2.169352 TGCATTTCTAGAGGGCAGACTC 59.831 50.000 10.01 0.00 37.77 3.36
410 411 2.191400 TGCATTTCTAGAGGGCAGACT 58.809 47.619 10.01 0.00 0.00 3.24
411 412 2.698855 TGCATTTCTAGAGGGCAGAC 57.301 50.000 10.01 0.00 0.00 3.51
412 413 3.719268 TTTGCATTTCTAGAGGGCAGA 57.281 42.857 12.74 7.87 35.68 4.26
413 414 4.996788 ATTTTGCATTTCTAGAGGGCAG 57.003 40.909 12.74 0.00 35.68 4.85
414 415 5.754782 TCTATTTTGCATTTCTAGAGGGCA 58.245 37.500 10.01 10.01 0.00 5.36
415 416 6.699575 TTCTATTTTGCATTTCTAGAGGGC 57.300 37.500 0.00 0.00 0.00 5.19
455 456 9.899661 TTTGCCATAATACTACTAGAAACATGT 57.100 29.630 0.00 0.00 0.00 3.21
471 472 9.466497 TCAAAGAAGTCTAGAATTTGCCATAAT 57.534 29.630 6.91 0.00 32.28 1.28
472 473 8.862325 TCAAAGAAGTCTAGAATTTGCCATAA 57.138 30.769 6.91 0.00 32.28 1.90
473 474 8.730680 GTTCAAAGAAGTCTAGAATTTGCCATA 58.269 33.333 6.91 0.00 32.28 2.74
474 475 7.231317 TGTTCAAAGAAGTCTAGAATTTGCCAT 59.769 33.333 6.91 0.00 32.28 4.40
475 476 6.545666 TGTTCAAAGAAGTCTAGAATTTGCCA 59.454 34.615 6.91 7.59 32.28 4.92
476 477 6.970484 TGTTCAAAGAAGTCTAGAATTTGCC 58.030 36.000 6.91 0.00 32.28 4.52
477 478 8.856490 TTTGTTCAAAGAAGTCTAGAATTTGC 57.144 30.769 6.91 0.00 32.28 3.68
494 495 9.748708 CCATTAAGTCTCAATTCTTTTGTTCAA 57.251 29.630 0.00 0.00 0.00 2.69
495 496 9.130661 TCCATTAAGTCTCAATTCTTTTGTTCA 57.869 29.630 0.00 0.00 0.00 3.18
507 508 9.130661 TGTGAAGAAAAATCCATTAAGTCTCAA 57.869 29.630 0.00 0.00 0.00 3.02
508 509 8.567948 GTGTGAAGAAAAATCCATTAAGTCTCA 58.432 33.333 0.00 0.00 0.00 3.27
509 510 8.023706 GGTGTGAAGAAAAATCCATTAAGTCTC 58.976 37.037 0.00 0.00 0.00 3.36
510 511 7.725844 AGGTGTGAAGAAAAATCCATTAAGTCT 59.274 33.333 0.00 0.00 0.00 3.24
511 512 7.886338 AGGTGTGAAGAAAAATCCATTAAGTC 58.114 34.615 0.00 0.00 0.00 3.01
512 513 7.839680 AGGTGTGAAGAAAAATCCATTAAGT 57.160 32.000 0.00 0.00 0.00 2.24
513 514 8.981647 CAAAGGTGTGAAGAAAAATCCATTAAG 58.018 33.333 0.00 0.00 0.00 1.85
514 515 8.700051 TCAAAGGTGTGAAGAAAAATCCATTAA 58.300 29.630 0.00 0.00 0.00 1.40
515 516 8.141268 GTCAAAGGTGTGAAGAAAAATCCATTA 58.859 33.333 0.00 0.00 0.00 1.90
516 517 6.986231 GTCAAAGGTGTGAAGAAAAATCCATT 59.014 34.615 0.00 0.00 0.00 3.16
517 518 6.324770 AGTCAAAGGTGTGAAGAAAAATCCAT 59.675 34.615 0.00 0.00 0.00 3.41
518 519 5.656416 AGTCAAAGGTGTGAAGAAAAATCCA 59.344 36.000 0.00 0.00 0.00 3.41
519 520 6.149129 AGTCAAAGGTGTGAAGAAAAATCC 57.851 37.500 0.00 0.00 0.00 3.01
520 521 7.759433 TCAAAGTCAAAGGTGTGAAGAAAAATC 59.241 33.333 0.00 0.00 0.00 2.17
521 522 7.610865 TCAAAGTCAAAGGTGTGAAGAAAAAT 58.389 30.769 0.00 0.00 0.00 1.82
522 523 6.987386 TCAAAGTCAAAGGTGTGAAGAAAAA 58.013 32.000 0.00 0.00 0.00 1.94
523 524 6.208599 ACTCAAAGTCAAAGGTGTGAAGAAAA 59.791 34.615 0.00 0.00 0.00 2.29
524 525 5.710099 ACTCAAAGTCAAAGGTGTGAAGAAA 59.290 36.000 0.00 0.00 0.00 2.52
525 526 5.253330 ACTCAAAGTCAAAGGTGTGAAGAA 58.747 37.500 0.00 0.00 0.00 2.52
526 527 4.843728 ACTCAAAGTCAAAGGTGTGAAGA 58.156 39.130 0.00 0.00 0.00 2.87
527 528 5.162000 GACTCAAAGTCAAAGGTGTGAAG 57.838 43.478 2.28 0.00 44.45 3.02
539 540 3.618690 ATACAGGGCAGACTCAAAGTC 57.381 47.619 0.00 0.00 45.38 3.01
540 541 4.373156 AAATACAGGGCAGACTCAAAGT 57.627 40.909 0.00 0.00 0.00 2.66
541 542 4.156739 GGAAAATACAGGGCAGACTCAAAG 59.843 45.833 0.00 0.00 0.00 2.77
542 543 4.079253 GGAAAATACAGGGCAGACTCAAA 58.921 43.478 0.00 0.00 0.00 2.69
543 544 3.330701 AGGAAAATACAGGGCAGACTCAA 59.669 43.478 0.00 0.00 0.00 3.02
544 545 2.912956 AGGAAAATACAGGGCAGACTCA 59.087 45.455 0.00 0.00 0.00 3.41
545 546 3.536570 GAGGAAAATACAGGGCAGACTC 58.463 50.000 0.00 0.00 0.00 3.36
546 547 2.239907 GGAGGAAAATACAGGGCAGACT 59.760 50.000 0.00 0.00 0.00 3.24
547 548 2.644676 GGAGGAAAATACAGGGCAGAC 58.355 52.381 0.00 0.00 0.00 3.51
548 549 1.209504 CGGAGGAAAATACAGGGCAGA 59.790 52.381 0.00 0.00 0.00 4.26
549 550 1.209504 TCGGAGGAAAATACAGGGCAG 59.790 52.381 0.00 0.00 0.00 4.85
550 551 1.209504 CTCGGAGGAAAATACAGGGCA 59.790 52.381 0.00 0.00 0.00 5.36
551 552 1.485066 TCTCGGAGGAAAATACAGGGC 59.515 52.381 4.96 0.00 0.00 5.19
552 553 4.381411 GAATCTCGGAGGAAAATACAGGG 58.619 47.826 4.96 0.00 0.00 4.45
553 554 4.051922 CGAATCTCGGAGGAAAATACAGG 58.948 47.826 4.96 0.00 36.00 4.00
554 555 3.491267 GCGAATCTCGGAGGAAAATACAG 59.509 47.826 4.96 0.00 40.84 2.74
555 556 3.454375 GCGAATCTCGGAGGAAAATACA 58.546 45.455 4.96 0.00 40.84 2.29
556 557 2.801111 GGCGAATCTCGGAGGAAAATAC 59.199 50.000 4.96 0.00 40.84 1.89
557 558 2.432874 TGGCGAATCTCGGAGGAAAATA 59.567 45.455 4.96 0.00 40.84 1.40
558 559 1.209504 TGGCGAATCTCGGAGGAAAAT 59.790 47.619 4.96 0.00 40.84 1.82
559 560 0.611200 TGGCGAATCTCGGAGGAAAA 59.389 50.000 4.96 0.00 40.84 2.29
560 561 0.108329 GTGGCGAATCTCGGAGGAAA 60.108 55.000 4.96 0.00 40.84 3.13
561 562 0.970937 AGTGGCGAATCTCGGAGGAA 60.971 55.000 4.96 0.00 40.84 3.36
562 563 1.379977 AGTGGCGAATCTCGGAGGA 60.380 57.895 4.96 0.00 40.84 3.71
563 564 1.227089 CAGTGGCGAATCTCGGAGG 60.227 63.158 4.96 0.00 40.84 4.30
564 565 0.387202 ATCAGTGGCGAATCTCGGAG 59.613 55.000 0.00 0.00 40.84 4.63
565 566 0.824109 AATCAGTGGCGAATCTCGGA 59.176 50.000 0.00 0.00 40.84 4.55
566 567 0.933097 CAATCAGTGGCGAATCTCGG 59.067 55.000 0.00 0.00 40.84 4.63
567 568 0.302890 GCAATCAGTGGCGAATCTCG 59.697 55.000 0.00 0.00 43.89 4.04
568 569 1.063174 GTGCAATCAGTGGCGAATCTC 59.937 52.381 0.00 0.00 0.00 2.75
569 570 1.089920 GTGCAATCAGTGGCGAATCT 58.910 50.000 0.00 0.00 0.00 2.40
570 571 0.099436 GGTGCAATCAGTGGCGAATC 59.901 55.000 0.00 0.00 0.00 2.52
571 572 0.322816 AGGTGCAATCAGTGGCGAAT 60.323 50.000 0.00 0.00 0.00 3.34
572 573 0.323302 TAGGTGCAATCAGTGGCGAA 59.677 50.000 0.00 0.00 0.00 4.70
573 574 0.391130 GTAGGTGCAATCAGTGGCGA 60.391 55.000 0.00 0.00 0.00 5.54
574 575 1.369091 GGTAGGTGCAATCAGTGGCG 61.369 60.000 0.00 0.00 0.00 5.69
575 576 1.369091 CGGTAGGTGCAATCAGTGGC 61.369 60.000 0.00 0.00 0.00 5.01
576 577 1.369091 GCGGTAGGTGCAATCAGTGG 61.369 60.000 0.00 0.00 0.00 4.00
577 578 0.673333 TGCGGTAGGTGCAATCAGTG 60.673 55.000 0.00 0.00 39.87 3.66
578 579 0.253044 ATGCGGTAGGTGCAATCAGT 59.747 50.000 0.00 0.00 46.87 3.41
579 580 0.940126 GATGCGGTAGGTGCAATCAG 59.060 55.000 0.00 0.00 46.87 2.90
580 581 0.541392 AGATGCGGTAGGTGCAATCA 59.459 50.000 0.00 0.00 46.87 2.57
581 582 1.221414 GAGATGCGGTAGGTGCAATC 58.779 55.000 0.00 0.00 46.87 2.67
582 583 0.179045 GGAGATGCGGTAGGTGCAAT 60.179 55.000 0.00 0.00 46.87 3.56
583 584 1.220749 GGAGATGCGGTAGGTGCAA 59.779 57.895 0.00 0.00 46.87 4.08
585 586 1.227380 CTGGAGATGCGGTAGGTGC 60.227 63.158 0.00 0.00 0.00 5.01
586 587 0.537188 AACTGGAGATGCGGTAGGTG 59.463 55.000 0.00 0.00 0.00 4.00
587 588 2.154567 TAACTGGAGATGCGGTAGGT 57.845 50.000 0.00 0.00 0.00 3.08
588 589 3.753294 ATTAACTGGAGATGCGGTAGG 57.247 47.619 0.00 0.00 0.00 3.18
589 590 6.692486 AGATTATTAACTGGAGATGCGGTAG 58.308 40.000 0.00 0.00 0.00 3.18
594 595 8.367156 AGAGAGAAGATTATTAACTGGAGATGC 58.633 37.037 0.00 0.00 0.00 3.91
619 620 4.450419 CCGCATTTTAATAGCTCCTCAGAG 59.550 45.833 0.00 0.00 43.57 3.35
621 622 3.499918 CCCGCATTTTAATAGCTCCTCAG 59.500 47.826 0.00 0.00 0.00 3.35
642 676 5.734720 TCACAATAACTCTGAAGGATGTCC 58.265 41.667 0.00 0.00 0.00 4.02
645 679 6.875726 TCACTTCACAATAACTCTGAAGGATG 59.124 38.462 10.52 2.51 43.50 3.51
649 683 6.708054 AGGTTCACTTCACAATAACTCTGAAG 59.292 38.462 5.31 5.31 44.37 3.02
659 693 6.293626 CGATTTTGAGAGGTTCACTTCACAAT 60.294 38.462 3.42 0.00 34.00 2.71
665 707 4.451900 ACACGATTTTGAGAGGTTCACTT 58.548 39.130 0.00 0.00 34.94 3.16
689 731 5.818678 TTGACAGCCCTTACTAAAGAGAA 57.181 39.130 0.00 0.00 34.37 2.87
690 732 5.818678 TTTGACAGCCCTTACTAAAGAGA 57.181 39.130 0.00 0.00 34.37 3.10
691 733 6.173339 TCATTTGACAGCCCTTACTAAAGAG 58.827 40.000 0.00 0.00 34.37 2.85
692 734 6.121776 TCATTTGACAGCCCTTACTAAAGA 57.878 37.500 0.00 0.00 34.37 2.52
760 815 3.378422 TCAGAATGCACCACGTGAAGTG 61.378 50.000 19.30 18.19 43.26 3.16
811 866 7.535139 TCCTTATTTGTTTATTGCTCGAAAGG 58.465 34.615 0.00 0.00 0.00 3.11
970 1036 0.390860 GTGGACTGGGATCGATCTGG 59.609 60.000 23.96 15.87 0.00 3.86
1378 1450 1.557832 ACCACACATAGTTACGGCCAT 59.442 47.619 2.24 0.00 0.00 4.40
1380 1452 2.103537 AACCACACATAGTTACGGCC 57.896 50.000 0.00 0.00 0.00 6.13
1482 1560 4.223700 ACCAAGAGCAACTCACATGATAGA 59.776 41.667 0.00 0.00 32.06 1.98
1498 1576 3.607741 AGCACAGATTCATCACCAAGAG 58.392 45.455 0.00 0.00 0.00 2.85
1528 1606 3.360867 TGTGAACAACAAACTGACCCAT 58.639 40.909 0.00 0.00 35.24 4.00
1542 1620 6.757897 ATTTTGAAGAAGACACTGTGAACA 57.242 33.333 15.86 1.27 0.00 3.18
1570 1648 6.738453 GCACCCACAACTTCATAAGAAAACAT 60.738 38.462 0.00 0.00 32.35 2.71
1572 1650 4.982295 GCACCCACAACTTCATAAGAAAAC 59.018 41.667 0.00 0.00 32.35 2.43
1577 1655 3.149196 ACTGCACCCACAACTTCATAAG 58.851 45.455 0.00 0.00 0.00 1.73
1612 1691 5.644977 AATCGCAGATCGGATACTCATAA 57.355 39.130 0.00 0.00 45.12 1.90
1630 1717 6.474364 TCAGTTACATGCGTGATTTAAATCG 58.526 36.000 20.45 12.89 38.26 3.34
1658 1745 3.728076 ACGGAATGACACGCATAGTAT 57.272 42.857 0.00 0.00 35.78 2.12
1666 1753 4.048504 TCATAAGCATACGGAATGACACG 58.951 43.478 4.37 0.00 37.86 4.49
1676 1763 9.755804 ATATGGAATGATACTCATAAGCATACG 57.244 33.333 0.00 0.00 35.76 3.06
1704 1791 7.281100 CGTGAGTAGTATATAGGATGATGCTCA 59.719 40.741 0.00 0.00 0.00 4.26
1705 1792 7.496263 TCGTGAGTAGTATATAGGATGATGCTC 59.504 40.741 0.00 0.00 0.00 4.26
1706 1793 7.339482 TCGTGAGTAGTATATAGGATGATGCT 58.661 38.462 0.00 0.00 0.00 3.79
1707 1794 7.281324 ACTCGTGAGTAGTATATAGGATGATGC 59.719 40.741 0.00 0.00 40.43 3.91
1708 1795 8.725405 ACTCGTGAGTAGTATATAGGATGATG 57.275 38.462 0.00 0.00 40.43 3.07
1723 1810 5.048013 CCATATGGAATGCTACTCGTGAGTA 60.048 44.000 17.49 9.25 39.07 2.59
1724 1811 4.262207 CCATATGGAATGCTACTCGTGAGT 60.262 45.833 17.49 7.77 40.59 3.41
1725 1812 4.021981 TCCATATGGAATGCTACTCGTGAG 60.022 45.833 22.52 0.00 42.18 3.51
1726 1813 3.895041 TCCATATGGAATGCTACTCGTGA 59.105 43.478 22.52 0.00 42.18 4.35
1727 1814 4.257267 TCCATATGGAATGCTACTCGTG 57.743 45.455 22.52 0.00 42.18 4.35
1739 1826 8.882557 ACATGCATGTAATAATTCCATATGGA 57.117 30.769 30.50 20.98 40.07 3.41
1744 1831 9.135189 ACAACTACATGCATGTAATAATTCCAT 57.865 29.630 33.05 10.23 42.20 3.41
1745 1832 8.404765 CACAACTACATGCATGTAATAATTCCA 58.595 33.333 33.05 15.24 42.20 3.53
1746 1833 8.405531 ACACAACTACATGCATGTAATAATTCC 58.594 33.333 33.05 0.00 42.20 3.01
1751 1838 9.443323 ACTTTACACAACTACATGCATGTAATA 57.557 29.630 33.05 18.54 42.20 0.98
1752 1839 8.335532 ACTTTACACAACTACATGCATGTAAT 57.664 30.769 33.05 25.01 42.20 1.89
1753 1840 7.737972 ACTTTACACAACTACATGCATGTAA 57.262 32.000 33.05 19.12 42.20 2.41
1754 1841 8.878769 CATACTTTACACAACTACATGCATGTA 58.121 33.333 31.98 31.98 41.97 2.29
1755 1842 7.148255 CCATACTTTACACAACTACATGCATGT 60.148 37.037 33.20 33.20 44.48 3.21
1756 1843 7.188834 CCATACTTTACACAACTACATGCATG 58.811 38.462 25.09 25.09 0.00 4.06
1757 1844 6.183360 GCCATACTTTACACAACTACATGCAT 60.183 38.462 0.00 0.00 0.00 3.96
1758 1845 5.123186 GCCATACTTTACACAACTACATGCA 59.877 40.000 0.00 0.00 0.00 3.96
1759 1846 5.123186 TGCCATACTTTACACAACTACATGC 59.877 40.000 0.00 0.00 0.00 4.06
1774 1861 7.873699 AGTCTATAATTAGGGTGCCATACTT 57.126 36.000 0.00 0.00 0.00 2.24
1785 1872 7.787725 AGAAAACCGCAAGTCTATAATTAGG 57.212 36.000 0.00 0.00 0.00 2.69
1793 1880 5.717078 TCTTCTAGAAAACCGCAAGTCTA 57.283 39.130 6.63 0.00 0.00 2.59
1798 1885 7.833786 TCTATAGTTCTTCTAGAAAACCGCAA 58.166 34.615 18.69 9.10 35.75 4.85
1854 1941 4.336433 CCATGGTTGCGAGTCTGAATAAAT 59.664 41.667 2.57 0.00 0.00 1.40
1863 1950 0.745845 ATCTGCCATGGTTGCGAGTC 60.746 55.000 14.67 0.00 0.00 3.36
1864 1951 0.541392 TATCTGCCATGGTTGCGAGT 59.459 50.000 14.67 0.00 0.00 4.18
1868 1955 2.954318 ACAATCTATCTGCCATGGTTGC 59.046 45.455 14.67 0.00 0.00 4.17
1876 1963 7.548780 GGATCTTGAATCTACAATCTATCTGCC 59.451 40.741 0.00 0.00 0.00 4.85
1877 1964 8.093307 TGGATCTTGAATCTACAATCTATCTGC 58.907 37.037 0.00 0.00 0.00 4.26
1934 2025 8.721478 GCTGTCTACAAGAGATTTCATTGTAAA 58.279 33.333 8.69 0.00 38.54 2.01
1939 2030 6.597280 GGAAGCTGTCTACAAGAGATTTCATT 59.403 38.462 0.00 0.00 36.29 2.57
1942 2033 4.873259 GGGAAGCTGTCTACAAGAGATTTC 59.127 45.833 0.00 0.00 36.29 2.17
1959 2050 1.141053 AGATTGATACCACGGGGAAGC 59.859 52.381 12.96 0.00 38.05 3.86
1964 2055 5.424757 TCTAACAAAGATTGATACCACGGG 58.575 41.667 0.00 0.00 0.00 5.28
1965 2056 6.017934 CCATCTAACAAAGATTGATACCACGG 60.018 42.308 0.00 0.00 42.62 4.94
1991 2082 8.556194 TCTATTTACAAAAGTATTGGCGCTATG 58.444 33.333 7.64 0.00 0.00 2.23
1995 2086 6.687105 CACTCTATTTACAAAAGTATTGGCGC 59.313 38.462 0.00 0.00 0.00 6.53
1997 2088 7.535139 TGCACTCTATTTACAAAAGTATTGGC 58.465 34.615 0.00 0.00 0.00 4.52
2036 2127 5.356190 CAGGTGAATGAGTTGCAATATCACT 59.644 40.000 16.72 8.52 38.08 3.41
2043 2134 1.689984 TGCAGGTGAATGAGTTGCAA 58.310 45.000 0.00 0.00 41.34 4.08
2081 2172 5.642491 GGCGACTCAAGGTTTTAGATAACTT 59.358 40.000 0.00 0.00 0.00 2.66
2083 2174 5.176592 AGGCGACTCAAGGTTTTAGATAAC 58.823 41.667 0.00 0.00 32.90 1.89
2086 2177 3.983044 AGGCGACTCAAGGTTTTAGAT 57.017 42.857 0.00 0.00 32.90 1.98
2103 2197 1.227674 CCCGTCTTGCTGGATAGGC 60.228 63.158 0.00 0.00 0.00 3.93
2106 2200 0.178068 GCTTCCCGTCTTGCTGGATA 59.822 55.000 0.00 0.00 30.42 2.59
2121 2215 3.930634 AGTTTCATTGCTCAAGGCTTC 57.069 42.857 0.00 0.00 42.39 3.86
2215 2309 3.257127 TGATTTTCCGGGTTGTTGGAATC 59.743 43.478 0.00 1.40 43.44 2.52
2227 2321 5.163814 TGCTTTTGTTTGTTTGATTTTCCGG 60.164 36.000 0.00 0.00 0.00 5.14
2229 2323 7.080724 TGTTGCTTTTGTTTGTTTGATTTTCC 58.919 30.769 0.00 0.00 0.00 3.13
2241 2335 7.547227 ACTATTGTCTCTTGTTGCTTTTGTTT 58.453 30.769 0.00 0.00 0.00 2.83
2244 2338 8.506437 TCATACTATTGTCTCTTGTTGCTTTTG 58.494 33.333 0.00 0.00 0.00 2.44
2245 2339 8.621532 TCATACTATTGTCTCTTGTTGCTTTT 57.378 30.769 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.