Multiple sequence alignment - TraesCS1B01G277500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G277500 chr1B 100.000 6099 0 0 1 6099 485293776 485287678 0.000000e+00 11263
1 TraesCS1B01G277500 chr1B 92.063 126 10 0 3899 4024 657345342 657345467 1.750000e-40 178
2 TraesCS1B01G277500 chr1D 90.411 2847 124 72 1 2793 362493913 362491162 0.000000e+00 3607
3 TraesCS1B01G277500 chr1D 96.267 1661 47 4 4016 5668 362490041 362488388 0.000000e+00 2710
4 TraesCS1B01G277500 chr1D 95.634 733 31 1 2945 3677 362491033 362490302 0.000000e+00 1175
5 TraesCS1B01G277500 chr1D 94.920 374 19 0 5726 6099 362488388 362488015 2.450000e-163 586
6 TraesCS1B01G277500 chr1D 90.323 93 4 1 2796 2888 362491118 362491031 3.860000e-22 117
7 TraesCS1B01G277500 chr1A 92.806 1668 76 17 4016 5668 462002191 462000553 0.000000e+00 2375
8 TraesCS1B01G277500 chr1A 89.870 1461 63 30 1353 2793 462004706 462003311 0.000000e+00 1799
9 TraesCS1B01G277500 chr1A 93.023 989 42 13 2952 3914 462003175 462002188 0.000000e+00 1419
10 TraesCS1B01G277500 chr1A 84.470 1378 69 49 3 1315 462006000 462004703 0.000000e+00 1225
11 TraesCS1B01G277500 chr1A 96.533 375 8 2 5730 6099 462000553 462000179 3.120000e-172 616
12 TraesCS1B01G277500 chr1A 90.816 98 4 4 2796 2892 462003267 462003174 6.420000e-25 126
13 TraesCS1B01G277500 chr3A 85.135 962 141 2 4072 5032 653853001 653852041 0.000000e+00 983
14 TraesCS1B01G277500 chr3B 84.823 962 144 2 4072 5032 682787559 682786599 0.000000e+00 966
15 TraesCS1B01G277500 chr3B 94.915 118 5 1 3908 4025 751945138 751945254 3.750000e-42 183
16 TraesCS1B01G277500 chr3D 83.349 1051 162 8 4072 5114 518153052 518152007 0.000000e+00 959
17 TraesCS1B01G277500 chr3D 93.701 127 5 3 3897 4022 460702603 460702727 2.900000e-43 187
18 TraesCS1B01G277500 chr6D 97.414 116 3 0 3911 4026 3196488 3196373 1.340000e-46 198
19 TraesCS1B01G277500 chr7B 97.368 114 3 0 3911 4024 23007576 23007689 1.730000e-45 195
20 TraesCS1B01G277500 chr4A 97.273 110 3 0 3909 4018 467233726 467233835 2.900000e-43 187
21 TraesCS1B01G277500 chr7A 94.915 118 6 0 3900 4017 403363504 403363387 1.040000e-42 185
22 TraesCS1B01G277500 chr6B 94.915 118 6 0 3902 4019 641047088 641046971 1.040000e-42 185
23 TraesCS1B01G277500 chr5B 95.690 116 4 1 3911 4026 464143807 464143921 1.040000e-42 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G277500 chr1B 485287678 485293776 6098 True 11263 11263 100.000 1 6099 1 chr1B.!!$R1 6098
1 TraesCS1B01G277500 chr1D 362488015 362493913 5898 True 1639 3607 93.511 1 6099 5 chr1D.!!$R1 6098
2 TraesCS1B01G277500 chr1A 462000179 462006000 5821 True 1260 2375 91.253 3 6099 6 chr1A.!!$R1 6096
3 TraesCS1B01G277500 chr3A 653852041 653853001 960 True 983 983 85.135 4072 5032 1 chr3A.!!$R1 960
4 TraesCS1B01G277500 chr3B 682786599 682787559 960 True 966 966 84.823 4072 5032 1 chr3B.!!$R1 960
5 TraesCS1B01G277500 chr3D 518152007 518153052 1045 True 959 959 83.349 4072 5114 1 chr3D.!!$R1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 663 0.107508 CATGCATCGGGTCTCCAACT 60.108 55.0 0.00 0.0 0.00 3.16 F
1294 1375 0.395586 CGGGGGATCTTTTCATGCCA 60.396 55.0 0.00 0.0 35.97 4.92 F
1839 1931 0.322008 CTTTGGGCCTCTCTGTGGAC 60.322 60.0 4.53 0.0 0.00 4.02 F
2940 3092 0.035056 CACACCCACCCCTGAGATTC 60.035 60.0 0.00 0.0 0.00 2.52 F
3428 3580 0.098376 GGCTTCATTTGCAGCTCTCG 59.902 55.0 2.38 0.0 34.71 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 1666 0.407139 AACCTTCAGCCATGAGCCTT 59.593 50.0 0.00 0.0 45.47 4.35 R
2921 3073 0.035056 GAATCTCAGGGGTGGGTGTG 60.035 60.0 0.00 0.0 0.00 3.82 R
3479 3631 0.034059 AGCAGTCCGTCACAAAGAGG 59.966 55.0 0.00 0.0 0.00 3.69 R
4294 4490 1.159285 CATCACGCTCAGCTTTTGGA 58.841 50.0 0.00 0.0 0.00 3.53 R
5267 5479 0.673437 AACAGAATTGTTGGCCACCG 59.327 50.0 3.88 0.0 45.54 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 61 1.869767 CTCTTCTTTTGCGTGAGTGCT 59.130 47.619 0.00 0.00 35.36 4.40
72 80 4.096382 GTGCTTGTAGAGAGAGAAGAGGAG 59.904 50.000 0.00 0.00 0.00 3.69
271 284 2.434359 GACCCCTCCGCGTTCTTG 60.434 66.667 4.92 0.00 0.00 3.02
358 381 4.906437 GTCATTTGTTTGCTCTTCTCGTTC 59.094 41.667 0.00 0.00 0.00 3.95
410 433 1.538276 GCATTTGCTTGATTCGTCCG 58.462 50.000 0.00 0.00 38.21 4.79
411 434 1.135689 GCATTTGCTTGATTCGTCCGT 60.136 47.619 0.00 0.00 38.21 4.69
412 435 2.774007 CATTTGCTTGATTCGTCCGTC 58.226 47.619 0.00 0.00 0.00 4.79
413 436 0.787787 TTTGCTTGATTCGTCCGTCG 59.212 50.000 0.00 0.00 41.41 5.12
415 438 1.805945 GCTTGATTCGTCCGTCGCT 60.806 57.895 0.00 0.00 39.67 4.93
416 439 0.524816 GCTTGATTCGTCCGTCGCTA 60.525 55.000 0.00 0.00 39.67 4.26
424 451 1.353804 GTCCGTCGCTAGCTCTCTG 59.646 63.158 13.93 0.00 0.00 3.35
503 533 0.935898 CAGCGGCAGTCTGATGATTC 59.064 55.000 3.32 0.00 37.15 2.52
522 553 2.796557 TCTTCTCCTCTTCTCGAGCAA 58.203 47.619 7.81 2.36 38.49 3.91
627 663 0.107508 CATGCATCGGGTCTCCAACT 60.108 55.000 0.00 0.00 0.00 3.16
700 760 1.804326 CTCGTTAACACTCGGCCCG 60.804 63.158 6.39 0.00 0.00 6.13
701 761 3.484547 CGTTAACACTCGGCCCGC 61.485 66.667 0.00 0.00 0.00 6.13
719 779 1.554583 GCCTCGGTTCCTTCCCTCTT 61.555 60.000 0.00 0.00 0.00 2.85
760 821 1.135972 GTGTGTGTTGATCGATGCCAC 60.136 52.381 0.54 7.18 0.00 5.01
795 860 2.025887 TCTCTCTTCCCCTCCATTTTGC 60.026 50.000 0.00 0.00 0.00 3.68
973 1048 1.608717 GAGGCGGGAGAAGAGCAAGA 61.609 60.000 0.00 0.00 0.00 3.02
1078 1153 4.899616 CGCGCCGTTTCGTTTAATAATTAT 59.100 37.500 0.00 0.00 0.00 1.28
1080 1155 6.242830 CGCGCCGTTTCGTTTAATAATTATAG 59.757 38.462 0.00 0.00 0.00 1.31
1103 1178 6.427441 AGTCCAAAGTTCTTTCCTCTTTCTT 58.573 36.000 0.00 0.00 30.41 2.52
1286 1367 0.834612 TCGCATTACGGGGGATCTTT 59.165 50.000 0.00 0.00 43.89 2.52
1294 1375 0.395586 CGGGGGATCTTTTCATGCCA 60.396 55.000 0.00 0.00 35.97 4.92
1299 1380 4.023291 GGGGATCTTTTCATGCCAGTTAA 58.977 43.478 0.00 0.00 35.97 2.01
1330 1411 4.557942 GCATTGGCGGTGTTCTTG 57.442 55.556 0.00 0.00 0.00 3.02
1335 1416 3.056328 GGCGGTGTTCTTGCCCTC 61.056 66.667 0.00 0.00 43.06 4.30
1336 1417 3.056328 GCGGTGTTCTTGCCCTCC 61.056 66.667 0.00 0.00 0.00 4.30
1337 1418 2.359975 CGGTGTTCTTGCCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
1338 1419 2.035783 GGTGTTCTTGCCCTCCCC 59.964 66.667 0.00 0.00 0.00 4.81
1427 1508 2.034221 GCTTCCTTTCAGCCCGGT 59.966 61.111 0.00 0.00 0.00 5.28
1438 1519 2.044946 GCCCGGTTCATGGCTTCT 60.045 61.111 0.00 0.00 44.46 2.85
1536 1625 1.673920 GGATCGTCTCCTGTCAGTCTC 59.326 57.143 0.00 0.00 41.29 3.36
1588 1677 0.677731 TGTGCAGTAAGGCTCATGGC 60.678 55.000 0.00 0.00 40.90 4.40
1678 1767 5.179368 TCCGATCAAAGATTTGTCAGTTGTC 59.821 40.000 5.29 0.00 39.18 3.18
1835 1927 1.777272 AGTTTCTTTGGGCCTCTCTGT 59.223 47.619 4.53 0.00 0.00 3.41
1839 1931 0.322008 CTTTGGGCCTCTCTGTGGAC 60.322 60.000 4.53 0.00 0.00 4.02
1853 1945 3.068024 TCTGTGGACTGGCAAACATTTTC 59.932 43.478 0.00 0.00 0.00 2.29
1930 2022 1.859302 AAAGGGCACACTTTTGGACA 58.141 45.000 0.00 0.00 37.39 4.02
2065 2158 5.433526 ACCTGTATAAAAAGCAATCGCCTA 58.566 37.500 0.00 0.00 39.83 3.93
2076 2169 3.639094 AGCAATCGCCTAGTCTATCTTGT 59.361 43.478 0.00 0.00 39.83 3.16
2077 2170 4.100189 AGCAATCGCCTAGTCTATCTTGTT 59.900 41.667 0.00 0.00 39.83 2.83
2078 2171 4.210120 GCAATCGCCTAGTCTATCTTGTTG 59.790 45.833 0.00 0.00 0.00 3.33
2079 2172 5.592054 CAATCGCCTAGTCTATCTTGTTGA 58.408 41.667 0.00 0.00 0.00 3.18
2080 2173 5.854010 ATCGCCTAGTCTATCTTGTTGAA 57.146 39.130 0.00 0.00 0.00 2.69
2081 2174 4.995124 TCGCCTAGTCTATCTTGTTGAAC 58.005 43.478 0.00 0.00 0.00 3.18
2082 2175 4.705507 TCGCCTAGTCTATCTTGTTGAACT 59.294 41.667 0.00 0.00 0.00 3.01
2083 2176 5.884232 TCGCCTAGTCTATCTTGTTGAACTA 59.116 40.000 0.00 0.00 0.00 2.24
2113 2206 2.895242 AGAAAGCAGGAGCCTGAAAT 57.105 45.000 20.29 4.55 46.30 2.17
2222 2321 4.026886 GCGTTTGTGCTTCTAACCTTTTTG 60.027 41.667 0.00 0.00 0.00 2.44
2393 2497 8.771920 TTAGTAACATCATAACCTGTCTTGTG 57.228 34.615 0.00 0.00 0.00 3.33
2396 2500 8.103305 AGTAACATCATAACCTGTCTTGTGAAT 58.897 33.333 0.00 0.00 0.00 2.57
2453 2558 8.739972 TCCAAACTAAGGATATTTTTCTTCTGC 58.260 33.333 0.00 0.00 0.00 4.26
2456 2561 7.631717 ACTAAGGATATTTTTCTTCTGCACC 57.368 36.000 0.00 0.00 0.00 5.01
2488 2594 8.445275 TGTTTTAGACAAGCATAGTTCTTTCA 57.555 30.769 0.00 0.00 34.69 2.69
2566 2674 4.932200 GTGATGACACAACTAAGAGAAGGG 59.068 45.833 0.00 0.00 45.32 3.95
2794 2902 4.391358 CAAACTATTTGCGACACGTTAGG 58.609 43.478 0.00 0.00 33.36 2.69
2809 2958 1.562672 TTAGGCAAGTCTGAGGGGGC 61.563 60.000 0.00 0.00 0.00 5.80
2866 3017 5.774498 AATTTTACTATGCAGGGCTTAGC 57.226 39.130 10.08 0.00 39.07 3.09
2867 3018 3.924114 TTTACTATGCAGGGCTTAGCA 57.076 42.857 6.53 0.00 45.92 3.49
2889 3041 8.735692 AGCAAAGGAAAAATTCAATTCTTTGA 57.264 26.923 19.15 0.00 40.09 2.69
2890 3042 8.615211 AGCAAAGGAAAAATTCAATTCTTTGAC 58.385 29.630 19.15 12.92 41.50 3.18
2891 3043 7.857389 GCAAAGGAAAAATTCAATTCTTTGACC 59.143 33.333 19.15 5.59 41.50 4.02
2892 3044 9.112725 CAAAGGAAAAATTCAATTCTTTGACCT 57.887 29.630 13.24 3.34 41.50 3.85
2893 3045 9.685276 AAAGGAAAAATTCAATTCTTTGACCTT 57.315 25.926 0.00 0.00 41.50 3.50
2894 3046 8.893219 AGGAAAAATTCAATTCTTTGACCTTC 57.107 30.769 0.00 0.00 41.50 3.46
2895 3047 8.708378 AGGAAAAATTCAATTCTTTGACCTTCT 58.292 29.630 0.00 0.00 41.50 2.85
2896 3048 9.981114 GGAAAAATTCAATTCTTTGACCTTCTA 57.019 29.630 0.00 0.00 41.50 2.10
2900 3052 9.971922 AAATTCAATTCTTTGACCTTCTAGTTG 57.028 29.630 0.00 0.00 41.50 3.16
2901 3053 6.560253 TCAATTCTTTGACCTTCTAGTTGC 57.440 37.500 0.00 0.00 36.94 4.17
2902 3054 6.299141 TCAATTCTTTGACCTTCTAGTTGCT 58.701 36.000 0.00 0.00 36.94 3.91
2903 3055 6.428159 TCAATTCTTTGACCTTCTAGTTGCTC 59.572 38.462 0.00 0.00 36.94 4.26
2904 3056 4.955811 TCTTTGACCTTCTAGTTGCTCA 57.044 40.909 0.00 0.00 0.00 4.26
2905 3057 5.489792 TCTTTGACCTTCTAGTTGCTCAT 57.510 39.130 0.00 0.00 0.00 2.90
2906 3058 6.605471 TCTTTGACCTTCTAGTTGCTCATA 57.395 37.500 0.00 0.00 0.00 2.15
2907 3059 7.187824 TCTTTGACCTTCTAGTTGCTCATAT 57.812 36.000 0.00 0.00 0.00 1.78
2908 3060 7.624549 TCTTTGACCTTCTAGTTGCTCATATT 58.375 34.615 0.00 0.00 0.00 1.28
2909 3061 8.103305 TCTTTGACCTTCTAGTTGCTCATATTT 58.897 33.333 0.00 0.00 0.00 1.40
2910 3062 8.635765 TTTGACCTTCTAGTTGCTCATATTTT 57.364 30.769 0.00 0.00 0.00 1.82
2911 3063 7.615582 TGACCTTCTAGTTGCTCATATTTTG 57.384 36.000 0.00 0.00 0.00 2.44
2912 3064 6.599244 TGACCTTCTAGTTGCTCATATTTTGG 59.401 38.462 0.00 0.00 0.00 3.28
2913 3065 5.358160 ACCTTCTAGTTGCTCATATTTTGGC 59.642 40.000 0.00 0.00 0.00 4.52
2914 3066 5.591877 CCTTCTAGTTGCTCATATTTTGGCT 59.408 40.000 0.00 0.00 0.00 4.75
2915 3067 6.096001 CCTTCTAGTTGCTCATATTTTGGCTT 59.904 38.462 0.00 0.00 0.00 4.35
2916 3068 7.363268 CCTTCTAGTTGCTCATATTTTGGCTTT 60.363 37.037 0.00 0.00 0.00 3.51
2917 3069 6.855836 TCTAGTTGCTCATATTTTGGCTTTG 58.144 36.000 0.00 0.00 0.00 2.77
2918 3070 4.248058 AGTTGCTCATATTTTGGCTTTGC 58.752 39.130 0.00 0.00 0.00 3.68
2928 3080 4.932105 GGCTTTGCCCCACACCCA 62.932 66.667 0.00 0.00 44.06 4.51
2929 3081 3.615709 GCTTTGCCCCACACCCAC 61.616 66.667 0.00 0.00 0.00 4.61
2930 3082 2.917227 CTTTGCCCCACACCCACC 60.917 66.667 0.00 0.00 0.00 4.61
2931 3083 4.548513 TTTGCCCCACACCCACCC 62.549 66.667 0.00 0.00 0.00 4.61
2936 3088 3.650950 CCCACACCCACCCCTGAG 61.651 72.222 0.00 0.00 0.00 3.35
2937 3089 2.529136 CCACACCCACCCCTGAGA 60.529 66.667 0.00 0.00 0.00 3.27
2938 3090 1.925455 CCACACCCACCCCTGAGAT 60.925 63.158 0.00 0.00 0.00 2.75
2939 3091 1.500783 CCACACCCACCCCTGAGATT 61.501 60.000 0.00 0.00 0.00 2.40
2940 3092 0.035056 CACACCCACCCCTGAGATTC 60.035 60.000 0.00 0.00 0.00 2.52
2941 3093 1.208165 ACACCCACCCCTGAGATTCC 61.208 60.000 0.00 0.00 0.00 3.01
2942 3094 0.916358 CACCCACCCCTGAGATTCCT 60.916 60.000 0.00 0.00 0.00 3.36
2943 3095 0.916358 ACCCACCCCTGAGATTCCTG 60.916 60.000 0.00 0.00 0.00 3.86
2944 3096 0.916358 CCCACCCCTGAGATTCCTGT 60.916 60.000 0.00 0.00 0.00 4.00
2945 3097 0.995024 CCACCCCTGAGATTCCTGTT 59.005 55.000 0.00 0.00 0.00 3.16
2946 3098 1.355720 CCACCCCTGAGATTCCTGTTT 59.644 52.381 0.00 0.00 0.00 2.83
2947 3099 2.576191 CCACCCCTGAGATTCCTGTTTA 59.424 50.000 0.00 0.00 0.00 2.01
2948 3100 3.370953 CCACCCCTGAGATTCCTGTTTAG 60.371 52.174 0.00 0.00 0.00 1.85
2949 3101 2.239907 ACCCCTGAGATTCCTGTTTAGC 59.760 50.000 0.00 0.00 0.00 3.09
2950 3102 2.507471 CCCCTGAGATTCCTGTTTAGCT 59.493 50.000 0.00 0.00 0.00 3.32
2976 3128 6.372185 CGCCACTGATGTAGACTATAACTAC 58.628 44.000 0.00 0.00 40.13 2.73
3062 3214 0.870307 GTGCTGATCCGCGATACGTT 60.870 55.000 8.23 0.00 41.42 3.99
3127 3279 3.247006 AGATGTTAGTGCTGGTAACCG 57.753 47.619 0.00 0.00 30.55 4.44
3128 3280 2.093658 AGATGTTAGTGCTGGTAACCGG 60.094 50.000 0.00 0.00 30.55 5.28
3328 3480 3.825014 CCATCATTTCCAGAGCCTAATGG 59.175 47.826 0.00 0.00 37.97 3.16
3377 3529 1.798813 GCTGTGAAACTTCCCTGTACG 59.201 52.381 0.00 0.00 38.04 3.67
3428 3580 0.098376 GGCTTCATTTGCAGCTCTCG 59.902 55.000 2.38 0.00 34.71 4.04
3566 3718 2.930950 GGCAATGCCTGGTTGTATAGA 58.069 47.619 18.47 0.00 46.69 1.98
3663 3815 6.607689 GCAAAAGGTTTGTTGCTTTTTAGTT 58.392 32.000 1.26 0.00 45.34 2.24
3670 3822 9.093970 AGGTTTGTTGCTTTTTAGTTAATGTTC 57.906 29.630 0.00 0.00 0.00 3.18
3693 3869 8.648968 GTTCAGTCTATTCTTCTTAAAACCGAG 58.351 37.037 0.00 0.00 0.00 4.63
3733 3928 9.662947 TCATGCTCTAAAATATGATATCCAGTG 57.337 33.333 0.00 0.00 0.00 3.66
3830 4026 9.796180 TTGTACTAGGTCTATTCTCTAGGAATC 57.204 37.037 9.03 0.00 42.96 2.52
3859 4055 5.899278 AGAAGGGGCCTTGTTAGATTTTAA 58.101 37.500 0.84 0.00 36.26 1.52
3861 4057 7.648770 AGAAGGGGCCTTGTTAGATTTTAATA 58.351 34.615 0.84 0.00 36.26 0.98
3868 4064 7.560262 GGCCTTGTTAGATTTTAATACTTCCCT 59.440 37.037 0.00 0.00 0.00 4.20
3914 4110 6.603599 AGAATGGGCCTTGTTAGATTTTACTC 59.396 38.462 4.53 0.00 0.00 2.59
3915 4111 4.595986 TGGGCCTTGTTAGATTTTACTCC 58.404 43.478 4.53 0.00 0.00 3.85
3916 4112 3.952323 GGGCCTTGTTAGATTTTACTCCC 59.048 47.826 0.84 0.00 0.00 4.30
3917 4113 4.325109 GGGCCTTGTTAGATTTTACTCCCT 60.325 45.833 0.84 0.00 0.00 4.20
3918 4114 4.882427 GGCCTTGTTAGATTTTACTCCCTC 59.118 45.833 0.00 0.00 0.00 4.30
3919 4115 4.882427 GCCTTGTTAGATTTTACTCCCTCC 59.118 45.833 0.00 0.00 0.00 4.30
3920 4116 5.116882 CCTTGTTAGATTTTACTCCCTCCG 58.883 45.833 0.00 0.00 0.00 4.63
3921 4117 5.338137 CCTTGTTAGATTTTACTCCCTCCGT 60.338 44.000 0.00 0.00 0.00 4.69
3922 4118 5.750352 TGTTAGATTTTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
3923 4119 5.727434 TGTTAGATTTTACTCCCTCCGTTC 58.273 41.667 0.00 0.00 0.00 3.95
3924 4120 3.521947 AGATTTTACTCCCTCCGTTCG 57.478 47.619 0.00 0.00 0.00 3.95
3925 4121 2.167900 AGATTTTACTCCCTCCGTTCGG 59.832 50.000 4.74 4.74 0.00 4.30
3926 4122 1.631405 TTTTACTCCCTCCGTTCGGA 58.369 50.000 13.34 13.34 0.00 4.55
3927 4123 1.631405 TTTACTCCCTCCGTTCGGAA 58.369 50.000 14.79 0.04 33.41 4.30
3928 4124 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
3929 4125 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3930 4126 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3931 4127 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3932 4128 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3933 4129 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3934 4130 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3935 4131 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3936 4132 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3937 4133 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3938 4134 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3939 4135 3.256383 TCCGTTCGGAATTACTTGTCTCA 59.744 43.478 11.66 0.00 0.00 3.27
3940 4136 3.612860 CCGTTCGGAATTACTTGTCTCAG 59.387 47.826 5.19 0.00 0.00 3.35
3941 4137 4.482386 CGTTCGGAATTACTTGTCTCAGA 58.518 43.478 0.00 0.00 0.00 3.27
3942 4138 4.921515 CGTTCGGAATTACTTGTCTCAGAA 59.078 41.667 0.00 0.00 0.00 3.02
3943 4139 5.404366 CGTTCGGAATTACTTGTCTCAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
3944 4140 6.090898 CGTTCGGAATTACTTGTCTCAGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
3945 4141 6.968131 TCGGAATTACTTGTCTCAGAAATG 57.032 37.500 0.00 0.00 0.00 2.32
3946 4142 5.874810 TCGGAATTACTTGTCTCAGAAATGG 59.125 40.000 0.00 0.00 0.00 3.16
3947 4143 5.874810 CGGAATTACTTGTCTCAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
3948 4144 6.540189 CGGAATTACTTGTCTCAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
3949 4145 7.466455 CGGAATTACTTGTCTCAGAAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
3950 4146 7.337942 GGAATTACTTGTCTCAGAAATGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
3951 4147 9.383519 GAATTACTTGTCTCAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
3952 4148 9.911788 AATTACTTGTCTCAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
3953 4149 8.948631 TTACTTGTCTCAGAAATGGATGTATC 57.051 34.615 0.00 0.00 0.00 2.24
3954 4150 7.192852 ACTTGTCTCAGAAATGGATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
3955 4151 8.311395 ACTTGTCTCAGAAATGGATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
3956 4152 8.420222 ACTTGTCTCAGAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 0.00 2.43
3957 4153 8.539117 TTGTCTCAGAAATGGATGTATCTAGA 57.461 34.615 0.00 0.00 0.00 2.43
3958 4154 8.539117 TGTCTCAGAAATGGATGTATCTAGAA 57.461 34.615 0.00 0.00 0.00 2.10
3959 4155 8.417106 TGTCTCAGAAATGGATGTATCTAGAAC 58.583 37.037 0.00 0.00 0.00 3.01
3960 4156 8.637986 GTCTCAGAAATGGATGTATCTAGAACT 58.362 37.037 0.00 0.00 0.00 3.01
3961 4157 9.868160 TCTCAGAAATGGATGTATCTAGAACTA 57.132 33.333 0.00 0.00 0.00 2.24
3988 4184 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
3989 4185 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
3990 4186 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
3991 4187 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
3992 4188 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
3993 4189 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
3994 4190 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
3995 4191 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
3996 4192 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
3997 4193 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
3998 4194 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
3999 4195 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
4000 4196 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
4001 4197 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
4002 4198 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
4003 4199 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
4004 4200 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
4005 4201 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
4006 4202 2.883574 TCGCGACAAGTAATTCCGAAT 58.116 42.857 3.71 0.00 0.00 3.34
4007 4203 2.601314 TCGCGACAAGTAATTCCGAATG 59.399 45.455 3.71 0.00 0.00 2.67
4008 4204 2.285602 CGCGACAAGTAATTCCGAATGG 60.286 50.000 0.00 0.00 0.00 3.16
4009 4205 2.933906 GCGACAAGTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
4189 4385 2.110967 CATCAGGCAAGCAGGGTCG 61.111 63.158 0.00 0.00 0.00 4.79
4192 4388 4.021925 AGGCAAGCAGGGTCGACC 62.022 66.667 27.04 27.04 40.67 4.79
4294 4490 9.129532 GTCAGAATAATTGAAAGGATCAGGAAT 57.870 33.333 0.00 0.00 39.77 3.01
4708 4904 2.487532 CGACCCGCCGAACCTCTAT 61.488 63.158 0.00 0.00 0.00 1.98
4786 4982 2.485426 CTGGAACAACTTCATGATGCGT 59.515 45.455 8.45 3.85 38.70 5.24
4789 4985 3.058293 GGAACAACTTCATGATGCGTGAA 60.058 43.478 15.67 0.00 37.09 3.18
5044 5243 1.446272 CGAGGCGAAGAACCAGACC 60.446 63.158 0.00 0.00 0.00 3.85
5267 5479 3.132801 GCAGCTCTGAGCCTTGGC 61.133 66.667 25.09 19.02 43.77 4.52
5284 5496 1.080569 GCGGTGGCCAACAATTCTG 60.081 57.895 23.36 7.47 0.00 3.02
5403 5623 4.203654 ACTCTCTCCCGTTCCAAATTAC 57.796 45.455 0.00 0.00 0.00 1.89
5409 5629 3.078837 TCCCGTTCCAAATTACTGAAGC 58.921 45.455 0.00 0.00 0.00 3.86
5421 5641 9.346725 CCAAATTACTGAAGCTCTAATTTTGTC 57.653 33.333 0.00 0.00 30.90 3.18
5428 5648 8.594550 ACTGAAGCTCTAATTTTGTCCTAACTA 58.405 33.333 0.00 0.00 0.00 2.24
5530 5750 6.435904 TCCATACCCAGAAATTTAACTTGGTG 59.564 38.462 11.07 5.69 34.68 4.17
5582 5802 5.356426 CAACTGATCATTATACCGTGTCCA 58.644 41.667 0.00 0.00 0.00 4.02
5583 5803 5.201713 ACTGATCATTATACCGTGTCCAG 57.798 43.478 0.00 0.00 0.00 3.86
5584 5804 4.893524 ACTGATCATTATACCGTGTCCAGA 59.106 41.667 0.00 0.00 0.00 3.86
5585 5805 5.362717 ACTGATCATTATACCGTGTCCAGAA 59.637 40.000 0.00 0.00 0.00 3.02
5586 5806 6.042093 ACTGATCATTATACCGTGTCCAGAAT 59.958 38.462 0.00 0.00 0.00 2.40
5587 5807 6.826668 TGATCATTATACCGTGTCCAGAATT 58.173 36.000 0.00 0.00 0.00 2.17
5588 5808 7.279615 TGATCATTATACCGTGTCCAGAATTT 58.720 34.615 0.00 0.00 0.00 1.82
5617 5837 9.436957 AATTTAACTATGTACAAGTCAGTGAGG 57.563 33.333 0.00 0.00 0.00 3.86
5667 5897 1.792367 CGCTCATCGTGACAAAGAACA 59.208 47.619 0.00 0.00 0.00 3.18
5668 5898 2.410262 CGCTCATCGTGACAAAGAACAC 60.410 50.000 0.00 0.00 0.00 3.32
5669 5899 2.543848 GCTCATCGTGACAAAGAACACA 59.456 45.455 0.00 0.00 36.91 3.72
5670 5900 3.604772 GCTCATCGTGACAAAGAACACAC 60.605 47.826 0.00 0.00 36.91 3.82
5671 5901 3.526534 TCATCGTGACAAAGAACACACA 58.473 40.909 0.00 0.00 36.91 3.72
5672 5902 3.308595 TCATCGTGACAAAGAACACACAC 59.691 43.478 0.00 0.00 36.91 3.82
5673 5903 2.689646 TCGTGACAAAGAACACACACA 58.310 42.857 0.00 0.00 36.91 3.72
5674 5904 2.413796 TCGTGACAAAGAACACACACAC 59.586 45.455 0.00 0.00 36.91 3.82
5675 5905 2.158645 CGTGACAAAGAACACACACACA 59.841 45.455 0.00 0.00 36.91 3.72
5676 5906 3.488489 GTGACAAAGAACACACACACAC 58.512 45.455 0.00 0.00 37.05 3.82
5677 5907 3.058570 GTGACAAAGAACACACACACACA 60.059 43.478 0.00 0.00 37.05 3.72
5678 5908 3.058570 TGACAAAGAACACACACACACAC 60.059 43.478 0.00 0.00 0.00 3.82
5679 5909 2.881513 ACAAAGAACACACACACACACA 59.118 40.909 0.00 0.00 0.00 3.72
5680 5910 3.233578 CAAAGAACACACACACACACAC 58.766 45.455 0.00 0.00 0.00 3.82
5681 5911 2.177394 AGAACACACACACACACACA 57.823 45.000 0.00 0.00 0.00 3.72
5682 5912 1.804151 AGAACACACACACACACACAC 59.196 47.619 0.00 0.00 0.00 3.82
5683 5913 1.533299 GAACACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
5684 5914 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5685 5915 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5686 5916 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5687 5917 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5688 5918 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5689 5919 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5690 5920 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5691 5921 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5692 5922 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5693 5923 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5694 5924 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5695 5925 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5696 5926 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5697 5927 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5698 5928 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5699 5929 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5700 5930 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5701 5931 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5702 5932 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5703 5933 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5704 5934 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5705 5935 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5706 5936 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5707 5937 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5708 5938 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5709 5939 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5710 5940 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5711 5941 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5712 5942 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5713 5943 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5714 5944 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
5715 5945 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
5716 5946 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
5717 5947 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
5718 5948 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
5719 5949 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
5720 5950 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
5721 5951 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
5722 5952 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
5847 6077 4.445385 ACACAAAATGCGATGCTTTCTTTC 59.555 37.500 0.00 0.00 0.00 2.62
5874 6104 4.363999 GACAATCTGAAGGACCGATACAG 58.636 47.826 0.00 0.00 0.00 2.74
5886 6116 4.341520 GGACCGATACAGAATCTACACCTT 59.658 45.833 0.00 0.00 31.87 3.50
5964 6196 6.597832 ACCACCTATCATACTCAGCTATTC 57.402 41.667 0.00 0.00 0.00 1.75
6002 6234 5.178797 GCTCTTCTATAGCTGACAAAACCA 58.821 41.667 0.00 0.00 37.01 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 61 3.053245 CCCCTCCTCTTCTCTCTCTACAA 60.053 52.174 0.00 0.00 0.00 2.41
271 284 2.005971 ACCGAACGATAAGAGCCAAC 57.994 50.000 0.00 0.00 0.00 3.77
316 339 2.517875 GCCATGGCCAGCACCTAG 60.518 66.667 27.24 0.00 34.56 3.02
358 381 2.437343 GGCGCGAACAACTCTCGAG 61.437 63.158 12.10 5.93 38.61 4.04
407 430 1.078356 ACAGAGAGCTAGCGACGGA 60.078 57.895 9.55 0.00 0.00 4.69
409 432 0.730265 AAGACAGAGAGCTAGCGACG 59.270 55.000 9.55 0.05 0.00 5.12
410 433 2.422127 AGAAAGACAGAGAGCTAGCGAC 59.578 50.000 9.55 7.96 0.00 5.19
411 434 2.717390 AGAAAGACAGAGAGCTAGCGA 58.283 47.619 9.55 0.00 0.00 4.93
412 435 3.502191 AAGAAAGACAGAGAGCTAGCG 57.498 47.619 9.55 0.00 0.00 4.26
450 477 5.252969 AGACGTAATCGCCACTAATAACA 57.747 39.130 0.00 0.00 41.18 2.41
451 478 5.174579 GGAAGACGTAATCGCCACTAATAAC 59.825 44.000 0.00 0.00 41.18 1.89
452 479 5.284079 GGAAGACGTAATCGCCACTAATAA 58.716 41.667 0.00 0.00 41.18 1.40
453 480 4.555313 CGGAAGACGTAATCGCCACTAATA 60.555 45.833 0.00 0.00 41.18 0.98
454 481 3.714391 GGAAGACGTAATCGCCACTAAT 58.286 45.455 0.00 0.00 41.18 1.73
522 553 8.831715 TGCTGTTTTCTTCTTCTTTTCTTTTT 57.168 26.923 0.00 0.00 0.00 1.94
700 760 1.554583 AAGAGGGAAGGAACCGAGGC 61.555 60.000 0.00 0.00 0.00 4.70
701 761 0.537653 GAAGAGGGAAGGAACCGAGG 59.462 60.000 0.00 0.00 0.00 4.63
760 821 4.023536 GGAAGAGAGAGAGTAGTAATGGCG 60.024 50.000 0.00 0.00 0.00 5.69
837 905 3.593096 GCAATGTCATGTCAGAGTCAGA 58.407 45.455 0.00 0.00 0.00 3.27
838 906 2.676839 GGCAATGTCATGTCAGAGTCAG 59.323 50.000 0.00 0.00 0.00 3.51
839 907 2.616256 GGGCAATGTCATGTCAGAGTCA 60.616 50.000 0.00 0.00 0.00 3.41
840 908 2.012673 GGGCAATGTCATGTCAGAGTC 58.987 52.381 0.00 0.00 0.00 3.36
841 909 1.340405 GGGGCAATGTCATGTCAGAGT 60.340 52.381 0.00 0.00 0.00 3.24
842 910 1.386533 GGGGCAATGTCATGTCAGAG 58.613 55.000 0.00 0.00 0.00 3.35
1058 1133 8.550376 TGGACTATAATTATTAAACGAAACGGC 58.450 33.333 2.68 0.00 0.00 5.68
1078 1153 7.138054 AGAAAGAGGAAAGAACTTTGGACTA 57.862 36.000 4.48 0.00 34.63 2.59
1080 1155 6.095580 ACAAGAAAGAGGAAAGAACTTTGGAC 59.904 38.462 4.48 0.00 34.63 4.02
1286 1367 6.877322 GGTAACTAACTCTTAACTGGCATGAA 59.123 38.462 0.00 0.00 0.00 2.57
1294 1375 5.672421 ATGCGGGTAACTAACTCTTAACT 57.328 39.130 0.00 0.00 0.00 2.24
1299 1380 2.679930 GCCAATGCGGGTAACTAACTCT 60.680 50.000 0.00 0.00 34.06 3.24
1427 1508 1.340405 GCCAGGAGAAGAAGCCATGAA 60.340 52.381 0.00 0.00 0.00 2.57
1436 1517 1.675801 CAGCAGTGCCAGGAGAAGA 59.324 57.895 12.58 0.00 0.00 2.87
1437 1518 2.039405 GCAGCAGTGCCAGGAGAAG 61.039 63.158 12.58 0.00 44.72 2.85
1438 1519 2.033141 GCAGCAGTGCCAGGAGAA 59.967 61.111 12.58 0.00 44.72 2.87
1474 1562 4.781959 CAGCAAACGCCATGGCCG 62.782 66.667 30.79 25.69 37.98 6.13
1521 1610 3.057596 CAGAGTTGAGACTGACAGGAGAC 60.058 52.174 7.51 0.00 35.88 3.36
1536 1625 8.835467 TCGTTTAAAAATGAAGTTCAGAGTTG 57.165 30.769 11.91 0.00 31.38 3.16
1575 1664 1.065126 ACCTTCAGCCATGAGCCTTAC 60.065 52.381 0.00 0.00 45.47 2.34
1576 1665 1.289160 ACCTTCAGCCATGAGCCTTA 58.711 50.000 0.00 0.00 45.47 2.69
1577 1666 0.407139 AACCTTCAGCCATGAGCCTT 59.593 50.000 0.00 0.00 45.47 4.35
1588 1677 2.301346 AGCACAACTTGGAACCTTCAG 58.699 47.619 0.00 0.00 0.00 3.02
1626 1715 2.362120 GGAAGCATGGCTGGCTGT 60.362 61.111 2.00 0.00 41.66 4.40
1678 1767 3.140325 ACATGGGTGACTTTGTACCTG 57.860 47.619 0.00 0.00 37.15 4.00
1748 1840 4.113354 GACTCGTATTTTGCGATTCTCCT 58.887 43.478 0.00 0.00 37.74 3.69
1835 1927 2.364970 CCAGAAAATGTTTGCCAGTCCA 59.635 45.455 0.00 0.00 0.00 4.02
1839 1931 2.137523 GCACCAGAAAATGTTTGCCAG 58.862 47.619 0.00 0.00 32.36 4.85
1853 1945 2.747855 GAAAGGGAGCCGCACCAG 60.748 66.667 9.22 0.00 0.00 4.00
1930 2022 2.919602 ACATAACTGTCCCATTGGAGGT 59.080 45.455 3.62 0.00 42.85 3.85
2051 2144 5.283457 AGATAGACTAGGCGATTGCTTTT 57.717 39.130 4.59 0.00 42.25 2.27
2055 2148 3.983741 ACAAGATAGACTAGGCGATTGC 58.016 45.455 0.00 0.00 41.71 3.56
2057 2150 5.854010 TCAACAAGATAGACTAGGCGATT 57.146 39.130 0.00 0.00 0.00 3.34
2080 2173 9.114952 GCTCCTGCTTTCTTCTTAATAATTAGT 57.885 33.333 0.00 0.00 36.03 2.24
2081 2174 8.563732 GGCTCCTGCTTTCTTCTTAATAATTAG 58.436 37.037 0.00 0.00 39.59 1.73
2082 2175 8.275040 AGGCTCCTGCTTTCTTCTTAATAATTA 58.725 33.333 0.00 0.00 39.59 1.40
2083 2176 7.067981 CAGGCTCCTGCTTTCTTCTTAATAATT 59.932 37.037 2.59 0.00 37.24 1.40
2261 2365 4.862641 AACTAGGATTTGTAGGGCACAT 57.137 40.909 0.00 0.00 36.90 3.21
2413 2517 7.229907 TCCTTAGTTTGGAGTACCATTGAAAAC 59.770 37.037 0.00 0.00 46.34 2.43
2432 2536 7.406104 AGGTGCAGAAGAAAAATATCCTTAGT 58.594 34.615 0.00 0.00 0.00 2.24
2453 2558 5.163561 TGCTTGTCTAAAACAGGAAAAGGTG 60.164 40.000 0.00 0.00 39.58 4.00
2456 2561 7.875971 ACTATGCTTGTCTAAAACAGGAAAAG 58.124 34.615 0.00 0.00 39.58 2.27
2566 2674 3.006247 TGAAACTTTTGCTTTTGGTGGC 58.994 40.909 0.00 0.00 0.00 5.01
2655 2763 8.064814 GCAGAAACAATAGCTATAAGCAAGTAC 58.935 37.037 6.68 0.00 45.56 2.73
2793 2901 4.432741 GGCCCCCTCAGACTTGCC 62.433 72.222 0.00 0.00 0.00 4.52
2794 2902 4.785453 CGGCCCCCTCAGACTTGC 62.785 72.222 0.00 0.00 0.00 4.01
2823 2974 7.967890 AATTTCTTCATTGTTTTGCCTAAGG 57.032 32.000 0.00 0.00 0.00 2.69
2866 3017 9.112725 AGGTCAAAGAATTGAATTTTTCCTTTG 57.887 29.630 17.07 17.07 46.66 2.77
2867 3018 9.685276 AAGGTCAAAGAATTGAATTTTTCCTTT 57.315 25.926 6.76 3.00 46.66 3.11
2889 3041 5.358160 GCCAAAATATGAGCAACTAGAAGGT 59.642 40.000 0.00 0.00 0.00 3.50
2890 3042 5.591877 AGCCAAAATATGAGCAACTAGAAGG 59.408 40.000 0.00 0.00 0.00 3.46
2891 3043 6.690194 AGCCAAAATATGAGCAACTAGAAG 57.310 37.500 0.00 0.00 0.00 2.85
2892 3044 7.315142 CAAAGCCAAAATATGAGCAACTAGAA 58.685 34.615 0.00 0.00 0.00 2.10
2893 3045 6.625740 GCAAAGCCAAAATATGAGCAACTAGA 60.626 38.462 0.00 0.00 0.00 2.43
2894 3046 5.517770 GCAAAGCCAAAATATGAGCAACTAG 59.482 40.000 0.00 0.00 0.00 2.57
2895 3047 5.410067 GCAAAGCCAAAATATGAGCAACTA 58.590 37.500 0.00 0.00 0.00 2.24
2896 3048 4.248058 GCAAAGCCAAAATATGAGCAACT 58.752 39.130 0.00 0.00 0.00 3.16
2897 3049 4.588805 GCAAAGCCAAAATATGAGCAAC 57.411 40.909 0.00 0.00 0.00 4.17
2912 3064 3.615709 GTGGGTGTGGGGCAAAGC 61.616 66.667 0.00 0.00 0.00 3.51
2913 3065 2.917227 GGTGGGTGTGGGGCAAAG 60.917 66.667 0.00 0.00 0.00 2.77
2914 3066 4.548513 GGGTGGGTGTGGGGCAAA 62.549 66.667 0.00 0.00 0.00 3.68
2919 3071 3.650950 CTCAGGGGTGGGTGTGGG 61.651 72.222 0.00 0.00 0.00 4.61
2920 3072 1.500783 AATCTCAGGGGTGGGTGTGG 61.501 60.000 0.00 0.00 0.00 4.17
2921 3073 0.035056 GAATCTCAGGGGTGGGTGTG 60.035 60.000 0.00 0.00 0.00 3.82
2922 3074 1.208165 GGAATCTCAGGGGTGGGTGT 61.208 60.000 0.00 0.00 0.00 4.16
2923 3075 0.916358 AGGAATCTCAGGGGTGGGTG 60.916 60.000 0.00 0.00 0.00 4.61
2924 3076 0.916358 CAGGAATCTCAGGGGTGGGT 60.916 60.000 0.00 0.00 0.00 4.51
2925 3077 0.916358 ACAGGAATCTCAGGGGTGGG 60.916 60.000 0.00 0.00 0.00 4.61
2926 3078 0.995024 AACAGGAATCTCAGGGGTGG 59.005 55.000 0.00 0.00 0.00 4.61
2927 3079 2.887151 AAACAGGAATCTCAGGGGTG 57.113 50.000 0.00 0.00 0.00 4.61
2928 3080 2.239907 GCTAAACAGGAATCTCAGGGGT 59.760 50.000 0.00 0.00 0.00 4.95
2929 3081 2.507471 AGCTAAACAGGAATCTCAGGGG 59.493 50.000 0.00 0.00 0.00 4.79
2930 3082 3.432890 GGAGCTAAACAGGAATCTCAGGG 60.433 52.174 0.00 0.00 0.00 4.45
2931 3083 3.739519 CGGAGCTAAACAGGAATCTCAGG 60.740 52.174 0.00 0.00 0.00 3.86
2932 3084 3.452474 CGGAGCTAAACAGGAATCTCAG 58.548 50.000 0.00 0.00 0.00 3.35
2933 3085 3.526931 CGGAGCTAAACAGGAATCTCA 57.473 47.619 0.00 0.00 0.00 3.27
2949 3101 1.107114 AGTCTACATCAGTGGCGGAG 58.893 55.000 0.00 0.00 0.00 4.63
2950 3102 2.430248 TAGTCTACATCAGTGGCGGA 57.570 50.000 0.00 0.00 0.00 5.54
2985 3137 7.116075 ACCTGCAAAGCATATATGAAATTGT 57.884 32.000 17.10 0.21 38.13 2.71
2989 3141 7.822161 ACATACCTGCAAAGCATATATGAAA 57.178 32.000 17.10 0.00 37.93 2.69
2995 3147 5.595542 ACATCAACATACCTGCAAAGCATAT 59.404 36.000 0.00 0.00 38.13 1.78
3042 3194 2.016704 CGTATCGCGGATCAGCACC 61.017 63.158 18.07 1.38 36.85 5.01
3111 3263 0.609662 TCCCGGTTACCAGCACTAAC 59.390 55.000 0.00 0.00 0.00 2.34
3127 3279 2.095461 GGAGTCCAATTTTGAGCTCCC 58.905 52.381 12.15 0.00 40.10 4.30
3128 3280 2.751806 CAGGAGTCCAATTTTGAGCTCC 59.248 50.000 12.86 17.63 43.10 4.70
3328 3480 1.244019 AAACCATGCACCTCTTCGGC 61.244 55.000 0.00 0.00 35.61 5.54
3338 3490 4.021280 ACAGCAATAACATCAAACCATGCA 60.021 37.500 0.00 0.00 35.11 3.96
3377 3529 4.717313 GACCAACCCGCCACCCTC 62.717 72.222 0.00 0.00 0.00 4.30
3479 3631 0.034059 AGCAGTCCGTCACAAAGAGG 59.966 55.000 0.00 0.00 0.00 3.69
3566 3718 4.082125 CCCTTACTGCTTTCAAATCAGGT 58.918 43.478 5.97 0.00 32.42 4.00
3670 3822 9.635520 TTACTCGGTTTTAAGAAGAATAGACTG 57.364 33.333 0.00 0.00 0.00 3.51
3678 3830 9.221933 TGCATATTTTACTCGGTTTTAAGAAGA 57.778 29.630 0.00 0.00 0.00 2.87
3679 3831 9.274065 GTGCATATTTTACTCGGTTTTAAGAAG 57.726 33.333 0.00 0.00 0.00 2.85
3720 3914 9.276590 CTGAAAATAGTTGCACTGGATATCATA 57.723 33.333 4.83 0.00 0.00 2.15
3727 3922 3.485394 TGCTGAAAATAGTTGCACTGGA 58.515 40.909 0.00 0.00 0.00 3.86
3830 4026 3.884037 AACAAGGCCCCTTCTATATGG 57.116 47.619 0.00 0.00 33.42 2.74
3840 4036 7.201884 GGAAGTATTAAAATCTAACAAGGCCCC 60.202 40.741 0.00 0.00 0.00 5.80
3899 4095 5.750352 ACGGAGGGAGTAAAATCTAACAA 57.250 39.130 0.00 0.00 0.00 2.83
3914 4110 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3915 4111 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3916 4112 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3917 4113 3.256383 TGAGACAAGTAATTCCGAACGGA 59.744 43.478 12.04 12.04 43.52 4.69
3918 4114 3.581755 TGAGACAAGTAATTCCGAACGG 58.418 45.455 6.94 6.94 0.00 4.44
3919 4115 4.482386 TCTGAGACAAGTAATTCCGAACG 58.518 43.478 0.00 0.00 0.00 3.95
3920 4116 6.780706 TTTCTGAGACAAGTAATTCCGAAC 57.219 37.500 0.00 0.00 0.00 3.95
3921 4117 6.371548 CCATTTCTGAGACAAGTAATTCCGAA 59.628 38.462 0.00 0.00 0.00 4.30
3922 4118 5.874810 CCATTTCTGAGACAAGTAATTCCGA 59.125 40.000 0.00 0.00 0.00 4.55
3923 4119 5.874810 TCCATTTCTGAGACAAGTAATTCCG 59.125 40.000 0.00 0.00 0.00 4.30
3924 4120 7.337942 ACATCCATTTCTGAGACAAGTAATTCC 59.662 37.037 0.00 0.00 0.00 3.01
3925 4121 8.273780 ACATCCATTTCTGAGACAAGTAATTC 57.726 34.615 0.00 0.00 0.00 2.17
3926 4122 9.911788 ATACATCCATTTCTGAGACAAGTAATT 57.088 29.630 0.00 0.00 0.00 1.40
3927 4123 9.553064 GATACATCCATTTCTGAGACAAGTAAT 57.447 33.333 0.00 0.00 0.00 1.89
3928 4124 8.762645 AGATACATCCATTTCTGAGACAAGTAA 58.237 33.333 0.00 0.00 0.00 2.24
3929 4125 8.311395 AGATACATCCATTTCTGAGACAAGTA 57.689 34.615 0.00 0.00 0.00 2.24
3930 4126 7.192852 AGATACATCCATTTCTGAGACAAGT 57.807 36.000 0.00 0.00 0.00 3.16
3931 4127 8.637099 TCTAGATACATCCATTTCTGAGACAAG 58.363 37.037 0.00 0.00 0.00 3.16
3932 4128 8.539117 TCTAGATACATCCATTTCTGAGACAA 57.461 34.615 0.00 0.00 0.00 3.18
3933 4129 8.417106 GTTCTAGATACATCCATTTCTGAGACA 58.583 37.037 0.00 0.00 0.00 3.41
3934 4130 8.637986 AGTTCTAGATACATCCATTTCTGAGAC 58.362 37.037 0.00 0.00 0.00 3.36
3935 4131 8.774546 AGTTCTAGATACATCCATTTCTGAGA 57.225 34.615 0.00 0.00 0.00 3.27
3962 4158 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
3963 4159 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
3964 4160 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
3965 4161 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
3966 4162 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
3967 4163 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
3968 4164 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
3969 4165 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
3970 4166 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
3971 4167 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
3972 4168 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
3973 4169 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
3974 4170 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
3975 4171 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
3976 4172 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
3977 4173 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
3978 4174 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
3979 4175 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
3980 4176 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
3981 4177 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
3982 4178 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
3983 4179 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
3984 4180 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
3985 4181 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
3986 4182 2.350899 TTCGGAATTACTTGTCGCGA 57.649 45.000 3.71 3.71 0.00 5.87
3987 4183 2.285602 CCATTCGGAATTACTTGTCGCG 60.286 50.000 0.00 0.00 0.00 5.87
3988 4184 2.933906 TCCATTCGGAATTACTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
3989 4185 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
3990 4186 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
3991 4187 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
3992 4188 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
3993 4189 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
3994 4190 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
3995 4191 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
3996 4192 4.553678 AGTACTCCCTCCATTCGGAATTA 58.446 43.478 0.00 0.00 42.21 1.40
3997 4193 3.385115 AGTACTCCCTCCATTCGGAATT 58.615 45.455 0.00 0.00 42.21 2.17
3998 4194 3.047695 AGTACTCCCTCCATTCGGAAT 57.952 47.619 0.00 0.00 42.21 3.01
3999 4195 2.500098 CAAGTACTCCCTCCATTCGGAA 59.500 50.000 0.00 0.00 42.21 4.30
4000 4196 2.108168 CAAGTACTCCCTCCATTCGGA 58.892 52.381 0.00 0.00 39.79 4.55
4001 4197 1.831736 ACAAGTACTCCCTCCATTCGG 59.168 52.381 0.00 0.00 0.00 4.30
4002 4198 3.611766 AACAAGTACTCCCTCCATTCG 57.388 47.619 0.00 0.00 0.00 3.34
4003 4199 5.313712 TGAAAACAAGTACTCCCTCCATTC 58.686 41.667 0.00 0.00 0.00 2.67
4004 4200 5.316987 CTGAAAACAAGTACTCCCTCCATT 58.683 41.667 0.00 0.00 0.00 3.16
4005 4201 4.807643 GCTGAAAACAAGTACTCCCTCCAT 60.808 45.833 0.00 0.00 0.00 3.41
4006 4202 3.496160 GCTGAAAACAAGTACTCCCTCCA 60.496 47.826 0.00 0.00 0.00 3.86
4007 4203 3.075148 GCTGAAAACAAGTACTCCCTCC 58.925 50.000 0.00 0.00 0.00 4.30
4008 4204 3.740115 TGCTGAAAACAAGTACTCCCTC 58.260 45.455 0.00 0.00 0.00 4.30
4009 4205 3.857157 TGCTGAAAACAAGTACTCCCT 57.143 42.857 0.00 0.00 0.00 4.20
4010 4206 5.938125 TCTTATGCTGAAAACAAGTACTCCC 59.062 40.000 0.00 0.00 0.00 4.30
4011 4207 7.617041 ATCTTATGCTGAAAACAAGTACTCC 57.383 36.000 0.00 0.00 0.00 3.85
4192 4388 1.352352 ACAAGGATGACCAAGTCCCTG 59.648 52.381 0.00 0.00 38.94 4.45
4294 4490 1.159285 CATCACGCTCAGCTTTTGGA 58.841 50.000 0.00 0.00 0.00 3.53
4708 4904 1.374947 GCCCAGGTAGTGAAGCACA 59.625 57.895 0.00 0.00 36.74 4.57
4786 4982 1.779061 GACGTCGCTTGCGAATTCA 59.221 52.632 19.36 0.00 0.00 2.57
4891 5087 3.077556 CTCCGGTCCCACTCCAGG 61.078 72.222 0.00 0.00 0.00 4.45
5209 5414 5.072600 ACAGAGGAGGGTTTGTATTTGTGTA 59.927 40.000 0.00 0.00 0.00 2.90
5267 5479 0.673437 AACAGAATTGTTGGCCACCG 59.327 50.000 3.88 0.00 45.54 4.94
5284 5496 6.829229 ACTTATTAGCTAAACCAACCCAAC 57.171 37.500 10.85 0.00 0.00 3.77
5403 5623 7.913674 AGTTAGGACAAAATTAGAGCTTCAG 57.086 36.000 0.00 0.00 0.00 3.02
5530 5750 4.038402 CAGGGATATGATTTGCTCCAAACC 59.962 45.833 0.00 0.00 36.13 3.27
5667 5897 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5668 5898 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5669 5899 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5670 5900 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5671 5901 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5672 5902 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5673 5903 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5674 5904 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5675 5905 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5676 5906 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5677 5907 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5678 5908 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5679 5909 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5680 5910 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5681 5911 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5682 5912 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5683 5913 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5684 5914 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5685 5915 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5686 5916 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5687 5917 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5688 5918 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5689 5919 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5690 5920 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5691 5921 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5692 5922 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5693 5923 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5694 5924 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5695 5925 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
5696 5926 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
5814 6044 5.871465 TCGCATTTTGTGTATGCTTCTTA 57.129 34.783 0.00 0.00 44.78 2.10
5834 6064 2.672874 TGTCGATGGAAAGAAAGCATCG 59.327 45.455 0.06 0.06 44.25 3.84
5847 6077 2.555199 GGTCCTTCAGATTGTCGATGG 58.445 52.381 0.00 0.00 0.00 3.51
5874 6104 5.357878 TGCATTCATTCCAAGGTGTAGATTC 59.642 40.000 0.00 0.00 0.00 2.52
5886 6116 3.433343 ACAAGGTGATGCATTCATTCCA 58.567 40.909 0.00 0.00 36.54 3.53
6002 6234 4.445735 CCCCATACGTACATTCCCATCTTT 60.446 45.833 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.