Multiple sequence alignment - TraesCS1B01G277100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G277100 chr1B 100.000 4334 0 0 1 4334 484693858 484689525 0.000000e+00 8004.0
1 TraesCS1B01G277100 chr1B 91.272 1077 92 2 2734 3809 484463754 484462679 0.000000e+00 1467.0
2 TraesCS1B01G277100 chr1B 86.616 1046 86 23 802 1818 484465437 484464417 0.000000e+00 1107.0
3 TraesCS1B01G277100 chr1B 77.867 497 84 21 1128 1599 664317874 664318369 7.090000e-73 285.0
4 TraesCS1B01G277100 chr1B 83.621 232 26 8 342 570 605924042 605923820 1.580000e-49 207.0
5 TraesCS1B01G277100 chr1B 81.452 124 23 0 2731 2854 656183492 656183615 7.670000e-18 102.0
6 TraesCS1B01G277100 chr1A 90.685 1868 89 31 1 1791 461645033 461643174 0.000000e+00 2407.0
7 TraesCS1B01G277100 chr1A 91.613 930 69 9 2601 3525 461642552 461641627 0.000000e+00 1277.0
8 TraesCS1B01G277100 chr1A 88.507 931 77 12 812 1723 461524228 461523309 0.000000e+00 1099.0
9 TraesCS1B01G277100 chr1A 89.157 747 77 4 2735 3478 461522602 461521857 0.000000e+00 928.0
10 TraesCS1B01G277100 chr1A 90.377 478 42 3 3857 4334 461641773 461641300 3.680000e-175 625.0
11 TraesCS1B01G277100 chr1A 93.117 247 14 2 1782 2028 461643122 461642879 4.120000e-95 359.0
12 TraesCS1B01G277100 chr1A 100.000 45 0 0 2158 2202 461642838 461642794 2.780000e-12 84.2
13 TraesCS1B01G277100 chr1A 95.745 47 1 1 2450 2496 461642597 461642552 1.670000e-09 75.0
14 TraesCS1B01G277100 chr1D 95.004 1281 46 10 754 2028 362132821 362131553 0.000000e+00 1995.0
15 TraesCS1B01G277100 chr1D 93.990 782 47 0 2601 3382 362131146 362130365 0.000000e+00 1184.0
16 TraesCS1B01G277100 chr1D 88.498 939 101 6 2734 3670 362010696 362009763 0.000000e+00 1129.0
17 TraesCS1B01G277100 chr1D 86.915 1047 84 21 802 1819 362013419 362012397 0.000000e+00 1125.0
18 TraesCS1B01G277100 chr1D 88.031 518 36 11 3817 4334 362130381 362129890 1.340000e-164 590.0
19 TraesCS1B01G277100 chr1D 77.310 617 104 20 1124 1710 476872643 476872033 8.980000e-87 331.0
20 TraesCS1B01G277100 chr1D 92.511 227 13 4 2212 2436 362131398 362131174 5.410000e-84 322.0
21 TraesCS1B01G277100 chr1D 82.833 233 27 8 342 570 445064221 445063998 3.420000e-46 196.0
22 TraesCS1B01G277100 chr1D 85.294 102 9 4 3711 3811 362009770 362009674 2.760000e-17 100.0
23 TraesCS1B01G277100 chr1D 90.141 71 6 1 2158 2227 362131512 362131442 1.660000e-14 91.6
24 TraesCS1B01G277100 chr4D 85.532 235 25 5 330 563 4091886 4091660 2.010000e-58 237.0
25 TraesCS1B01G277100 chr5A 85.590 229 21 4 327 552 476664785 476665004 3.370000e-56 230.0
26 TraesCS1B01G277100 chr6A 82.883 222 28 3 343 563 11041805 11041593 1.590000e-44 191.0
27 TraesCS1B01G277100 chr2B 85.484 186 20 5 327 509 100983430 100983611 2.060000e-43 187.0
28 TraesCS1B01G277100 chr4B 85.246 183 23 4 330 509 481005246 481005065 7.400000e-43 185.0
29 TraesCS1B01G277100 chr4A 81.466 232 32 4 330 559 625898882 625899104 3.440000e-41 180.0
30 TraesCS1B01G277100 chr2D 83.871 186 23 5 327 509 64626567 64626748 2.070000e-38 171.0
31 TraesCS1B01G277100 chr2D 97.143 35 1 0 130 164 533780752 533780718 4.680000e-05 60.2
32 TraesCS1B01G277100 chr3D 87.097 124 14 2 1439 1561 326120752 326120630 5.840000e-29 139.0
33 TraesCS1B01G277100 chr3A 86.290 124 15 2 1439 1561 438810543 438810665 2.720000e-27 134.0
34 TraesCS1B01G277100 chr5B 87.629 97 9 2 578 672 137661875 137661970 4.580000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G277100 chr1B 484689525 484693858 4333 True 8004.000000 8004 100.000000 1 4334 1 chr1B.!!$R1 4333
1 TraesCS1B01G277100 chr1B 484462679 484465437 2758 True 1287.000000 1467 88.944000 802 3809 2 chr1B.!!$R3 3007
2 TraesCS1B01G277100 chr1A 461521857 461524228 2371 True 1013.500000 1099 88.832000 812 3478 2 chr1A.!!$R1 2666
3 TraesCS1B01G277100 chr1A 461641300 461645033 3733 True 804.533333 2407 93.589500 1 4334 6 chr1A.!!$R2 4333
4 TraesCS1B01G277100 chr1D 362129890 362132821 2931 True 836.520000 1995 91.935400 754 4334 5 chr1D.!!$R4 3580
5 TraesCS1B01G277100 chr1D 362009674 362013419 3745 True 784.666667 1129 86.902333 802 3811 3 chr1D.!!$R3 3009
6 TraesCS1B01G277100 chr1D 476872033 476872643 610 True 331.000000 331 77.310000 1124 1710 1 chr1D.!!$R2 586


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 453 0.609957 CCCCAATGAGCTGAGTGCAA 60.610 55.0 0.00 0.0 45.94 4.08 F
1368 1467 0.038526 CCAAGTTCGTCTACGCCACT 60.039 55.0 0.00 0.0 39.60 4.00 F
2507 3914 0.037326 CTGGTTGTTGAGAGCGCCTA 60.037 55.0 2.29 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1884 0.731417 CGGTTAGATCGACTGGACGT 59.269 55.0 0.00 0.00 34.70 4.34 R
2723 4175 0.109412 GAGAACCTGCATGCAAGTGC 60.109 55.0 22.19 20.25 45.25 4.40 R
3833 5287 1.913778 TCGTAAGCAGTAGGACACCA 58.086 50.0 0.00 0.00 37.18 4.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 128 9.703892 TTGTGATTGTTTGTATTTTTCCTATGG 57.296 29.630 0.00 0.00 0.00 2.74
126 129 9.083422 TGTGATTGTTTGTATTTTTCCTATGGA 57.917 29.630 0.00 0.00 0.00 3.41
128 131 9.527157 TGATTGTTTGTATTTTTCCTATGGAGA 57.473 29.630 0.00 0.00 31.21 3.71
137 159 9.396022 GTATTTTTCCTATGGAGATTGACTTCA 57.604 33.333 0.00 0.00 38.62 3.02
145 167 7.555554 CCTATGGAGATTGACTTCAGACAAATT 59.444 37.037 0.00 0.00 37.56 1.82
180 202 3.277142 AAAAAGATCGGGGCGAGTAAT 57.723 42.857 0.00 0.00 39.91 1.89
282 304 7.326063 GTGTAATTTTTACCTGTGATCTGTTGC 59.674 37.037 0.00 0.00 0.00 4.17
298 320 6.263516 TCTGTTGCGTTATAGTTGTACTCT 57.736 37.500 0.00 0.00 0.00 3.24
301 323 6.684686 TGTTGCGTTATAGTTGTACTCTCTT 58.315 36.000 0.00 0.00 0.00 2.85
303 325 6.754702 TGCGTTATAGTTGTACTCTCTTCT 57.245 37.500 0.00 0.00 0.00 2.85
304 326 6.783162 TGCGTTATAGTTGTACTCTCTTCTC 58.217 40.000 0.00 0.00 0.00 2.87
305 327 6.598457 TGCGTTATAGTTGTACTCTCTTCTCT 59.402 38.462 0.00 0.00 0.00 3.10
306 328 7.120873 TGCGTTATAGTTGTACTCTCTTCTCTT 59.879 37.037 0.00 0.00 0.00 2.85
307 329 7.969508 GCGTTATAGTTGTACTCTCTTCTCTTT 59.030 37.037 0.00 0.00 0.00 2.52
314 336 9.084533 AGTTGTACTCTCTTCTCTTTATGAAGT 57.915 33.333 0.00 0.00 41.04 3.01
317 339 9.516546 TGTACTCTCTTCTCTTTATGAAGTGTA 57.483 33.333 0.00 0.00 41.04 2.90
318 340 9.997482 GTACTCTCTTCTCTTTATGAAGTGTAG 57.003 37.037 0.00 0.00 41.04 2.74
319 341 8.644374 ACTCTCTTCTCTTTATGAAGTGTAGT 57.356 34.615 0.00 0.00 41.04 2.73
320 342 9.742144 ACTCTCTTCTCTTTATGAAGTGTAGTA 57.258 33.333 0.00 0.00 41.04 1.82
359 406 2.331194 GCATTGGAATGTGCAAGTCAC 58.669 47.619 0.00 0.00 45.82 3.67
384 431 7.625682 ACCATCTCTCTTCTCTTTAATTACCCT 59.374 37.037 0.00 0.00 0.00 4.34
389 436 6.614496 TCTCTTCTCTTTAATTACCCTACCCC 59.386 42.308 0.00 0.00 0.00 4.95
390 437 5.668991 TCTTCTCTTTAATTACCCTACCCCC 59.331 44.000 0.00 0.00 0.00 5.40
406 453 0.609957 CCCCAATGAGCTGAGTGCAA 60.610 55.000 0.00 0.00 45.94 4.08
432 479 2.847327 AGTGAGGAGACCATGTGTTG 57.153 50.000 0.00 0.00 0.00 3.33
437 484 2.421424 GAGGAGACCATGTGTTGAATGC 59.579 50.000 0.00 0.00 0.00 3.56
438 485 2.040813 AGGAGACCATGTGTTGAATGCT 59.959 45.455 0.00 0.00 0.00 3.79
454 507 8.407832 TGTTGAATGCTATTGGTCTTGATTATG 58.592 33.333 0.00 0.00 0.00 1.90
570 624 8.898761 TGTCAAACATACACTTATTTGTGAACT 58.101 29.630 1.47 0.00 40.12 3.01
619 673 2.279173 ACTTCCCTCCCTTGTTGCTAT 58.721 47.619 0.00 0.00 0.00 2.97
622 676 3.085952 TCCCTCCCTTGTTGCTATTTG 57.914 47.619 0.00 0.00 0.00 2.32
646 700 1.564348 ACATGGGGTAGTGGGAACATC 59.436 52.381 0.00 0.00 46.14 3.06
668 722 0.679960 CCCGTGGTTGGAGGAATTCC 60.680 60.000 17.31 17.31 46.98 3.01
683 755 5.081032 AGGAATTCCGTAATCTCTCCTAGG 58.919 45.833 18.82 0.82 42.08 3.02
714 786 2.539081 GGGTGCTTCCTCCCCAACT 61.539 63.158 0.00 0.00 38.57 3.16
746 818 4.340617 TGAGCCCGGTGATTTCTTAAAAT 58.659 39.130 0.00 0.00 37.80 1.82
751 823 7.672240 AGCCCGGTGATTTCTTAAAATAAAAA 58.328 30.769 0.00 0.00 35.21 1.94
752 824 7.817478 AGCCCGGTGATTTCTTAAAATAAAAAG 59.183 33.333 0.00 0.00 35.21 2.27
753 825 7.064134 GCCCGGTGATTTCTTAAAATAAAAAGG 59.936 37.037 0.00 0.00 35.21 3.11
824 897 8.033038 TGTAGTACAATGATTGACAGTAAGACC 58.967 37.037 12.80 0.00 0.00 3.85
982 1075 5.243954 TCGAGAAGATCCATCGGATTAACAT 59.756 40.000 10.73 0.00 43.27 2.71
1308 1407 2.632544 CCACGACGACCTACTGGCA 61.633 63.158 0.00 0.00 36.63 4.92
1368 1467 0.038526 CCAAGTTCGTCTACGCCACT 60.039 55.000 0.00 0.00 39.60 4.00
1644 1770 2.430367 GTGCACCGAGGGTTCCTT 59.570 61.111 5.22 0.00 31.76 3.36
1656 1782 1.202675 GGGTTCCTTTCCGTGTACACA 60.203 52.381 24.98 4.29 0.00 3.72
1756 1883 4.691685 TTCATAAATGAGCGTTTGGTACGT 59.308 37.500 0.00 0.00 41.43 3.57
1757 1884 5.868258 TTCATAAATGAGCGTTTGGTACGTA 59.132 36.000 0.00 0.00 41.43 3.57
1758 1885 6.183360 TTCATAAATGAGCGTTTGGTACGTAC 60.183 38.462 17.56 17.56 41.43 3.67
1759 1886 9.234849 TTCATAAATGAGCGTTTGGTACGTACG 62.235 40.741 18.98 15.01 41.43 3.67
1835 2051 2.744202 CAACACAGCCATTGACTAGACC 59.256 50.000 0.00 0.00 0.00 3.85
1847 2066 1.014564 ACTAGACCGAAGCAAAGCGC 61.015 55.000 0.00 0.00 42.91 5.92
1943 2167 8.940952 GTCACTACAAAATGCTAGAGATTTTCT 58.059 33.333 9.01 3.11 40.06 2.52
1993 2220 7.639113 TTTATCAAGGTTCAAAACACAGACT 57.361 32.000 0.00 0.00 0.00 3.24
2028 2256 7.437862 TCAAAATGTGCCAGAAAAATAAGACAC 59.562 33.333 0.00 0.00 0.00 3.67
2030 2258 3.234386 GTGCCAGAAAAATAAGACACGC 58.766 45.455 0.00 0.00 0.00 5.34
2033 2261 3.188460 GCCAGAAAAATAAGACACGCTGA 59.812 43.478 0.00 0.00 0.00 4.26
2034 2262 4.142600 GCCAGAAAAATAAGACACGCTGAT 60.143 41.667 0.00 0.00 0.00 2.90
2036 2264 5.352569 CCAGAAAAATAAGACACGCTGATCT 59.647 40.000 0.00 0.00 0.00 2.75
2037 2265 6.456181 CCAGAAAAATAAGACACGCTGATCTC 60.456 42.308 0.00 0.00 0.00 2.75
2039 2267 4.744795 AAATAAGACACGCTGATCTCCT 57.255 40.909 0.00 0.00 0.00 3.69
2040 2268 4.314740 AATAAGACACGCTGATCTCCTC 57.685 45.455 0.00 0.00 0.00 3.71
2041 2269 0.453793 AAGACACGCTGATCTCCTCG 59.546 55.000 0.00 0.00 0.00 4.63
2042 2270 0.678366 AGACACGCTGATCTCCTCGT 60.678 55.000 0.00 0.00 35.35 4.18
2043 2271 0.248296 GACACGCTGATCTCCTCGTC 60.248 60.000 0.00 0.00 32.38 4.20
2045 2273 1.077357 ACGCTGATCTCCTCGTCCT 60.077 57.895 0.00 0.00 0.00 3.85
2047 2275 0.817634 CGCTGATCTCCTCGTCCTCT 60.818 60.000 0.00 0.00 0.00 3.69
2048 2276 0.667993 GCTGATCTCCTCGTCCTCTG 59.332 60.000 0.00 0.00 0.00 3.35
2050 2278 2.221169 CTGATCTCCTCGTCCTCTGAG 58.779 57.143 0.00 0.00 0.00 3.35
2051 2279 1.840635 TGATCTCCTCGTCCTCTGAGA 59.159 52.381 6.17 0.00 38.17 3.27
2054 2282 2.925724 TCTCCTCGTCCTCTGAGAATC 58.074 52.381 6.17 0.00 35.43 2.52
2073 2301 9.424319 TGAGAATCATTAGTTTCTTGTACTGTC 57.576 33.333 0.00 0.00 42.56 3.51
2074 2302 8.467402 AGAATCATTAGTTTCTTGTACTGTCG 57.533 34.615 0.00 0.00 31.39 4.35
2075 2303 8.304596 AGAATCATTAGTTTCTTGTACTGTCGA 58.695 33.333 0.00 0.00 31.39 4.20
2076 2304 8.827177 AATCATTAGTTTCTTGTACTGTCGAA 57.173 30.769 0.00 0.00 0.00 3.71
2077 2305 7.633361 TCATTAGTTTCTTGTACTGTCGAAC 57.367 36.000 0.00 0.00 0.00 3.95
2078 2306 7.431249 TCATTAGTTTCTTGTACTGTCGAACT 58.569 34.615 0.00 1.53 0.00 3.01
2079 2307 7.924412 TCATTAGTTTCTTGTACTGTCGAACTT 59.076 33.333 0.00 0.00 0.00 2.66
2080 2308 8.548721 CATTAGTTTCTTGTACTGTCGAACTTT 58.451 33.333 0.00 0.00 0.00 2.66
2081 2309 6.980051 AGTTTCTTGTACTGTCGAACTTTT 57.020 33.333 0.00 0.00 0.00 2.27
2082 2310 6.772078 AGTTTCTTGTACTGTCGAACTTTTG 58.228 36.000 0.00 0.00 0.00 2.44
2083 2311 6.370718 AGTTTCTTGTACTGTCGAACTTTTGT 59.629 34.615 0.00 0.00 0.00 2.83
2084 2312 6.730960 TTCTTGTACTGTCGAACTTTTGTT 57.269 33.333 0.00 0.00 46.75 2.83
2097 2325 5.993748 AACTTTTGTTCCTTTGAGTTCCA 57.006 34.783 0.00 0.00 38.45 3.53
2098 2326 5.582689 ACTTTTGTTCCTTTGAGTTCCAG 57.417 39.130 0.00 0.00 0.00 3.86
2099 2327 5.261216 ACTTTTGTTCCTTTGAGTTCCAGA 58.739 37.500 0.00 0.00 0.00 3.86
2100 2328 5.714806 ACTTTTGTTCCTTTGAGTTCCAGAA 59.285 36.000 0.00 0.00 0.00 3.02
2101 2329 6.210584 ACTTTTGTTCCTTTGAGTTCCAGAAA 59.789 34.615 0.00 0.00 0.00 2.52
2102 2330 6.790232 TTTGTTCCTTTGAGTTCCAGAAAT 57.210 33.333 0.00 0.00 0.00 2.17
2103 2331 6.790232 TTGTTCCTTTGAGTTCCAGAAATT 57.210 33.333 0.00 0.00 0.00 1.82
2104 2332 6.790232 TGTTCCTTTGAGTTCCAGAAATTT 57.210 33.333 0.00 0.00 0.00 1.82
2105 2333 7.181569 TGTTCCTTTGAGTTCCAGAAATTTT 57.818 32.000 0.00 0.00 0.00 1.82
2106 2334 8.299990 TGTTCCTTTGAGTTCCAGAAATTTTA 57.700 30.769 0.00 0.00 0.00 1.52
2107 2335 8.923270 TGTTCCTTTGAGTTCCAGAAATTTTAT 58.077 29.630 0.00 0.00 0.00 1.40
2108 2336 9.764363 GTTCCTTTGAGTTCCAGAAATTTTATT 57.236 29.630 0.00 0.00 0.00 1.40
2133 2361 7.797038 TTCACTTTTGAGGACTAAGTAAACC 57.203 36.000 0.00 0.00 31.71 3.27
2134 2362 6.891388 TCACTTTTGAGGACTAAGTAAACCA 58.109 36.000 0.00 0.00 31.30 3.67
2135 2363 7.340256 TCACTTTTGAGGACTAAGTAAACCAA 58.660 34.615 0.00 0.00 31.30 3.67
2136 2364 7.830201 TCACTTTTGAGGACTAAGTAAACCAAA 59.170 33.333 0.00 0.00 31.30 3.28
2137 2365 8.463607 CACTTTTGAGGACTAAGTAAACCAAAA 58.536 33.333 0.00 0.00 31.30 2.44
2138 2366 8.464404 ACTTTTGAGGACTAAGTAAACCAAAAC 58.536 33.333 0.00 0.00 30.75 2.43
2139 2367 7.941431 TTTGAGGACTAAGTAAACCAAAACA 57.059 32.000 0.00 0.00 0.00 2.83
2140 2368 8.528044 TTTGAGGACTAAGTAAACCAAAACAT 57.472 30.769 0.00 0.00 0.00 2.71
2141 2369 9.629878 TTTGAGGACTAAGTAAACCAAAACATA 57.370 29.630 0.00 0.00 0.00 2.29
2142 2370 8.842358 TGAGGACTAAGTAAACCAAAACATAG 57.158 34.615 0.00 0.00 0.00 2.23
2143 2371 8.434392 TGAGGACTAAGTAAACCAAAACATAGT 58.566 33.333 0.00 0.00 33.97 2.12
2144 2372 9.933723 GAGGACTAAGTAAACCAAAACATAGTA 57.066 33.333 0.00 0.00 32.08 1.82
2145 2373 9.716531 AGGACTAAGTAAACCAAAACATAGTAC 57.283 33.333 0.00 0.00 33.09 2.73
2146 2374 8.939929 GGACTAAGTAAACCAAAACATAGTACC 58.060 37.037 0.00 0.00 32.08 3.34
2147 2375 8.538409 ACTAAGTAAACCAAAACATAGTACCG 57.462 34.615 0.00 0.00 30.62 4.02
2148 2376 6.806388 AAGTAAACCAAAACATAGTACCGG 57.194 37.500 0.00 0.00 0.00 5.28
2149 2377 6.112927 AGTAAACCAAAACATAGTACCGGA 57.887 37.500 9.46 0.00 0.00 5.14
2150 2378 6.532826 AGTAAACCAAAACATAGTACCGGAA 58.467 36.000 9.46 0.00 0.00 4.30
2151 2379 5.694231 AAACCAAAACATAGTACCGGAAC 57.306 39.130 9.46 0.00 0.00 3.62
2152 2380 4.354893 ACCAAAACATAGTACCGGAACA 57.645 40.909 9.46 0.00 0.00 3.18
2153 2381 4.716794 ACCAAAACATAGTACCGGAACAA 58.283 39.130 9.46 0.00 0.00 2.83
2154 2382 5.131784 ACCAAAACATAGTACCGGAACAAA 58.868 37.500 9.46 0.00 0.00 2.83
2155 2383 5.008911 ACCAAAACATAGTACCGGAACAAAC 59.991 40.000 9.46 0.00 0.00 2.93
2156 2384 4.996062 AAACATAGTACCGGAACAAACG 57.004 40.909 9.46 0.00 0.00 3.60
2214 2502 9.354673 TGAAGTTAAATCTTCAAGACAGGAAAT 57.645 29.630 6.15 0.00 46.88 2.17
2395 2802 1.202348 GAGCCAGCCAAAGCGTTAAAT 59.798 47.619 0.00 0.00 46.67 1.40
2408 2815 1.329599 CGTTAAATAACTCGGGCAGCC 59.670 52.381 1.26 1.26 34.12 4.85
2423 2842 0.592247 CAGCCGCGTTATCCAAATGC 60.592 55.000 4.92 0.00 0.00 3.56
2432 2851 6.861055 CCGCGTTATCCAAATGCTAAATTTAT 59.139 34.615 4.92 0.00 0.00 1.40
2434 2853 7.501515 GCGTTATCCAAATGCTAAATTTATGC 58.498 34.615 0.00 5.67 0.00 3.14
2435 2854 7.359181 GCGTTATCCAAATGCTAAATTTATGCC 60.359 37.037 13.55 2.12 0.00 4.40
2437 2856 8.764287 GTTATCCAAATGCTAAATTTATGCCAC 58.236 33.333 13.55 0.00 0.00 5.01
2439 2858 4.815846 CCAAATGCTAAATTTATGCCACCC 59.184 41.667 13.55 0.00 0.00 4.61
2440 2859 4.687901 AATGCTAAATTTATGCCACCCC 57.312 40.909 13.55 0.00 0.00 4.95
2442 2861 3.295973 TGCTAAATTTATGCCACCCCTC 58.704 45.455 13.55 0.00 0.00 4.30
2444 2863 3.704061 GCTAAATTTATGCCACCCCTCAA 59.296 43.478 0.00 0.00 0.00 3.02
2446 2865 3.756082 AATTTATGCCACCCCTCAAGA 57.244 42.857 0.00 0.00 0.00 3.02
2447 2866 3.756082 ATTTATGCCACCCCTCAAGAA 57.244 42.857 0.00 0.00 0.00 2.52
2448 2867 3.534357 TTTATGCCACCCCTCAAGAAA 57.466 42.857 0.00 0.00 0.00 2.52
2450 2869 2.397044 ATGCCACCCCTCAAGAAAAA 57.603 45.000 0.00 0.00 0.00 1.94
2502 3909 1.239968 CCCTGCTGGTTGTTGAGAGC 61.240 60.000 9.00 0.00 0.00 4.09
2504 3911 2.180131 CTGCTGGTTGTTGAGAGCGC 62.180 60.000 0.00 0.00 33.97 5.92
2505 3912 2.970974 GCTGGTTGTTGAGAGCGCC 61.971 63.158 2.29 0.00 0.00 6.53
2507 3914 0.037326 CTGGTTGTTGAGAGCGCCTA 60.037 55.000 2.29 0.00 0.00 3.93
2509 3916 1.009829 GGTTGTTGAGAGCGCCTATG 58.990 55.000 2.29 0.00 0.00 2.23
2510 3917 0.375106 GTTGTTGAGAGCGCCTATGC 59.625 55.000 2.29 0.00 0.00 3.14
2572 3981 6.389830 AAAAATGCCATGCTATATCGACAA 57.610 33.333 0.00 0.00 0.00 3.18
2573 3982 6.389830 AAAATGCCATGCTATATCGACAAA 57.610 33.333 0.00 0.00 0.00 2.83
2574 3983 6.579666 AAATGCCATGCTATATCGACAAAT 57.420 33.333 0.00 0.00 0.00 2.32
2575 3984 5.808042 ATGCCATGCTATATCGACAAATC 57.192 39.130 0.00 0.00 0.00 2.17
2576 3985 4.898320 TGCCATGCTATATCGACAAATCT 58.102 39.130 0.00 0.00 0.00 2.40
2577 3986 5.308014 TGCCATGCTATATCGACAAATCTT 58.692 37.500 0.00 0.00 0.00 2.40
2578 3987 6.463360 TGCCATGCTATATCGACAAATCTTA 58.537 36.000 0.00 0.00 0.00 2.10
2579 3988 6.934083 TGCCATGCTATATCGACAAATCTTAA 59.066 34.615 0.00 0.00 0.00 1.85
2580 3989 7.607607 TGCCATGCTATATCGACAAATCTTAAT 59.392 33.333 0.00 0.00 0.00 1.40
2581 3990 8.454106 GCCATGCTATATCGACAAATCTTAATT 58.546 33.333 0.00 0.00 0.00 1.40
2582 3991 9.979270 CCATGCTATATCGACAAATCTTAATTC 57.021 33.333 0.00 0.00 0.00 2.17
2633 4084 4.911610 CCGTGCAACTTTGTTAATTCAGAG 59.088 41.667 0.00 0.00 31.75 3.35
2651 4102 8.593945 ATTCAGAGATAACTAATTTTTGGGCA 57.406 30.769 0.00 0.00 0.00 5.36
2694 4146 7.816031 GCATGATTATTATCAGGAATGGGTTTG 59.184 37.037 10.31 0.00 43.48 2.93
2697 4149 8.281531 TGATTATTATCAGGAATGGGTTTGTCT 58.718 33.333 0.00 0.00 35.87 3.41
2723 4175 0.930310 CCTCCATTGACGCACATACG 59.070 55.000 0.00 0.00 39.50 3.06
2727 4179 0.721154 CATTGACGCACATACGCACT 59.279 50.000 0.00 0.00 36.19 4.40
2848 4300 2.030562 CCCTCAACGCCGTTGACT 59.969 61.111 27.27 0.00 45.88 3.41
2861 4313 1.335597 CGTTGACTTGGTGTCTAGCGA 60.336 52.381 0.00 0.00 45.54 4.93
2862 4314 2.671351 CGTTGACTTGGTGTCTAGCGAT 60.671 50.000 0.00 0.00 45.54 4.58
2892 4344 1.757118 CCCGAGAGCTCCACTAAATCA 59.243 52.381 10.93 0.00 0.00 2.57
2925 4377 1.752501 CTATCGTGTTCGCAAGCCCG 61.753 60.000 0.00 0.00 36.96 6.13
2960 4412 1.725164 CTTCTTTAGGTCGGCGTTCAC 59.275 52.381 6.85 0.00 0.00 3.18
3201 4653 1.302511 GGTGGAACGTGATGTGGCT 60.303 57.895 0.00 0.00 38.12 4.75
3234 4686 2.039974 TGCCGATGCGCTCACAAAT 61.040 52.632 9.73 0.00 41.78 2.32
3264 4716 3.953775 CCGGCAGAGTGGTGGGTT 61.954 66.667 0.00 0.00 0.00 4.11
3291 4743 2.174639 ACACAAGTTCATGGTCAAGGGA 59.825 45.455 0.00 0.00 0.00 4.20
3369 4822 1.770658 CATGGAGAGGACATTAGGCCA 59.229 52.381 5.01 0.00 0.00 5.36
3591 5045 1.137513 GAAACCACTTCACCTCGACG 58.862 55.000 0.00 0.00 33.86 5.12
3610 5064 2.420022 ACGATTCCTTTGGCATTCTTCG 59.580 45.455 0.00 0.00 0.00 3.79
3637 5091 3.559238 AATTGTTGATCACGTCCTTGC 57.441 42.857 0.00 0.00 0.00 4.01
3650 5104 2.223377 CGTCCTTGCTGTACTTGGTTTC 59.777 50.000 0.00 0.00 0.00 2.78
3706 5160 3.228453 TGAAGTTCCAGGAAGTACGTCT 58.772 45.455 10.18 0.00 0.00 4.18
3707 5161 4.401022 TGAAGTTCCAGGAAGTACGTCTA 58.599 43.478 10.18 0.00 0.00 2.59
3728 5182 7.246311 GTCTACTTGTCCATCATCAACATTTG 58.754 38.462 0.00 0.00 0.00 2.32
3788 5242 6.844254 TGCTAAACGTACACAAAAAGAGTTT 58.156 32.000 0.00 0.00 35.07 2.66
3789 5243 6.743627 TGCTAAACGTACACAAAAAGAGTTTG 59.256 34.615 0.00 0.00 33.27 2.93
3822 5276 9.907229 ATTAACTTTCCTAGTATCTTTCCCTTG 57.093 33.333 0.00 0.00 35.54 3.61
3823 5277 7.569599 AACTTTCCTAGTATCTTTCCCTTGA 57.430 36.000 0.00 0.00 35.54 3.02
3824 5278 7.757242 ACTTTCCTAGTATCTTTCCCTTGAT 57.243 36.000 0.00 0.00 34.56 2.57
3825 5279 7.569240 ACTTTCCTAGTATCTTTCCCTTGATG 58.431 38.462 0.00 0.00 34.56 3.07
3826 5280 7.182930 ACTTTCCTAGTATCTTTCCCTTGATGT 59.817 37.037 0.00 0.00 34.56 3.06
3827 5281 6.485830 TCCTAGTATCTTTCCCTTGATGTG 57.514 41.667 0.00 0.00 0.00 3.21
3828 5282 6.202331 TCCTAGTATCTTTCCCTTGATGTGA 58.798 40.000 0.00 0.00 0.00 3.58
3829 5283 6.846505 TCCTAGTATCTTTCCCTTGATGTGAT 59.153 38.462 0.00 0.00 0.00 3.06
3830 5284 7.348274 TCCTAGTATCTTTCCCTTGATGTGATT 59.652 37.037 0.00 0.00 0.00 2.57
3831 5285 7.659390 CCTAGTATCTTTCCCTTGATGTGATTC 59.341 40.741 0.00 0.00 0.00 2.52
3832 5286 6.962182 AGTATCTTTCCCTTGATGTGATTCA 58.038 36.000 0.00 0.00 0.00 2.57
3833 5287 7.580910 AGTATCTTTCCCTTGATGTGATTCAT 58.419 34.615 0.00 0.00 39.77 2.57
3834 5288 6.710597 ATCTTTCCCTTGATGTGATTCATG 57.289 37.500 0.00 0.00 36.83 3.07
3835 5289 4.951715 TCTTTCCCTTGATGTGATTCATGG 59.048 41.667 0.00 0.00 39.48 3.66
3836 5290 4.320546 TTCCCTTGATGTGATTCATGGT 57.679 40.909 0.00 0.00 38.60 3.55
3837 5291 3.623703 TCCCTTGATGTGATTCATGGTG 58.376 45.455 0.00 0.00 38.60 4.17
3838 5292 3.010472 TCCCTTGATGTGATTCATGGTGT 59.990 43.478 0.00 0.00 38.60 4.16
3839 5293 3.379372 CCCTTGATGTGATTCATGGTGTC 59.621 47.826 0.00 0.00 38.60 3.67
3840 5294 3.379372 CCTTGATGTGATTCATGGTGTCC 59.621 47.826 0.00 0.00 36.60 4.02
3841 5295 4.267536 CTTGATGTGATTCATGGTGTCCT 58.732 43.478 0.00 0.00 36.83 3.85
3842 5296 5.430886 CTTGATGTGATTCATGGTGTCCTA 58.569 41.667 0.00 0.00 36.83 2.94
3843 5297 4.769688 TGATGTGATTCATGGTGTCCTAC 58.230 43.478 0.00 0.00 36.83 3.18
3844 5298 4.471025 TGATGTGATTCATGGTGTCCTACT 59.529 41.667 0.00 0.00 36.83 2.57
3845 5299 4.206477 TGTGATTCATGGTGTCCTACTG 57.794 45.455 0.00 0.00 0.00 2.74
3846 5300 2.939103 GTGATTCATGGTGTCCTACTGC 59.061 50.000 0.00 0.00 0.00 4.40
3847 5301 2.840038 TGATTCATGGTGTCCTACTGCT 59.160 45.455 0.00 0.00 0.00 4.24
3848 5302 3.264193 TGATTCATGGTGTCCTACTGCTT 59.736 43.478 0.00 0.00 0.00 3.91
3849 5303 4.469586 TGATTCATGGTGTCCTACTGCTTA 59.530 41.667 0.00 0.00 0.00 3.09
3850 5304 3.887621 TCATGGTGTCCTACTGCTTAC 57.112 47.619 0.00 0.00 0.00 2.34
3851 5305 2.165641 TCATGGTGTCCTACTGCTTACG 59.834 50.000 0.00 0.00 0.00 3.18
3852 5306 1.913778 TGGTGTCCTACTGCTTACGA 58.086 50.000 0.00 0.00 0.00 3.43
3853 5307 2.241160 TGGTGTCCTACTGCTTACGAA 58.759 47.619 0.00 0.00 0.00 3.85
3863 5317 4.002906 ACTGCTTACGAAGTTTCATGGA 57.997 40.909 0.00 0.00 37.78 3.41
3866 5320 3.745975 TGCTTACGAAGTTTCATGGAGTG 59.254 43.478 0.00 0.00 37.78 3.51
3919 5373 4.814771 GCTACGGCTTGTTAATGTTCCTAT 59.185 41.667 0.00 0.00 35.22 2.57
3920 5374 5.277345 GCTACGGCTTGTTAATGTTCCTATG 60.277 44.000 0.00 0.00 35.22 2.23
3925 5379 6.293407 CGGCTTGTTAATGTTCCTATGGTATG 60.293 42.308 0.00 0.00 0.00 2.39
3945 5399 7.868415 TGGTATGTTTACACTTTTATGCAAACC 59.132 33.333 0.00 0.00 35.71 3.27
3952 5406 4.592778 ACACTTTTATGCAAACCCAAGGAT 59.407 37.500 0.00 0.00 0.00 3.24
3992 5446 1.608109 TGTGTGACACATGAACATGGC 59.392 47.619 15.39 8.17 39.62 4.40
3993 5447 1.608109 GTGTGACACATGAACATGGCA 59.392 47.619 12.26 10.23 42.91 4.92
3994 5448 2.034432 GTGTGACACATGAACATGGCAA 59.966 45.455 12.26 0.16 42.91 4.52
3997 5451 3.490526 GTGACACATGAACATGGCAAAAC 59.509 43.478 17.25 6.85 42.91 2.43
4009 5463 0.541764 GGCAAAACCACTCCCCATCA 60.542 55.000 0.00 0.00 38.86 3.07
4012 5466 2.315176 CAAAACCACTCCCCATCAACA 58.685 47.619 0.00 0.00 0.00 3.33
4023 5478 5.015178 ACTCCCCATCAACAAATCCTTTAGA 59.985 40.000 0.00 0.00 0.00 2.10
4033 5488 8.786898 TCAACAAATCCTTTAGAGTTCTTCATG 58.213 33.333 0.00 0.00 28.05 3.07
4036 5491 3.861840 TCCTTTAGAGTTCTTCATGCCG 58.138 45.455 0.00 0.00 0.00 5.69
4048 5503 5.490139 TCTTCATGCCGAATTTCTTCATC 57.510 39.130 0.00 0.00 31.69 2.92
4050 5505 5.591472 TCTTCATGCCGAATTTCTTCATCAT 59.409 36.000 0.00 0.00 31.69 2.45
4055 5510 9.889128 TCATGCCGAATTTCTTCATCATATATA 57.111 29.630 0.00 0.00 0.00 0.86
4117 5572 9.974750 GTTATCTTTATTTGAAGTTCGAGGAAG 57.025 33.333 0.00 2.87 0.00 3.46
4123 5578 6.787085 ATTTGAAGTTCGAGGAAGTACTTG 57.213 37.500 14.14 0.00 33.01 3.16
4124 5579 5.524971 TTGAAGTTCGAGGAAGTACTTGA 57.475 39.130 14.14 0.59 33.01 3.02
4130 5585 2.095364 TCGAGGAAGTACTTGAACTCGC 60.095 50.000 30.07 12.17 45.14 5.03
4237 5692 1.388547 TGGCACACCAAGAGTTCAAC 58.611 50.000 0.00 0.00 45.37 3.18
4238 5693 1.340502 TGGCACACCAAGAGTTCAACA 60.341 47.619 0.00 0.00 45.37 3.33
4243 5698 5.451242 GGCACACCAAGAGTTCAACATTAAA 60.451 40.000 0.00 0.00 35.26 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 114 9.396022 TGAAGTCAATCTCCATAGGAAAAATAC 57.604 33.333 0.00 0.00 0.00 1.89
163 185 3.277142 AAAATTACTCGCCCCGATCTT 57.723 42.857 0.00 0.00 34.61 2.40
164 186 3.277142 AAAAATTACTCGCCCCGATCT 57.723 42.857 0.00 0.00 34.61 2.75
197 219 8.902806 AGTGTTCAGAAAATTCATGTAAACTGA 58.097 29.630 0.00 0.00 0.00 3.41
198 220 9.520204 AAGTGTTCAGAAAATTCATGTAAACTG 57.480 29.630 0.00 0.00 0.00 3.16
252 274 9.912634 CAGATCACAGGTAAAAATTACACAAAT 57.087 29.630 0.00 0.00 0.00 2.32
255 277 8.349245 CAACAGATCACAGGTAAAAATTACACA 58.651 33.333 0.00 0.00 0.00 3.72
256 278 7.326063 GCAACAGATCACAGGTAAAAATTACAC 59.674 37.037 0.00 0.00 0.00 2.90
257 279 7.367285 GCAACAGATCACAGGTAAAAATTACA 58.633 34.615 0.00 0.00 0.00 2.41
259 281 6.205853 ACGCAACAGATCACAGGTAAAAATTA 59.794 34.615 0.00 0.00 0.00 1.40
271 293 5.779806 ACAACTATAACGCAACAGATCAC 57.220 39.130 0.00 0.00 0.00 3.06
277 299 6.263516 AGAGAGTACAACTATAACGCAACA 57.736 37.500 0.00 0.00 0.00 3.33
356 403 8.478877 GGTAATTAAAGAGAAGAGAGATGGTGA 58.521 37.037 0.00 0.00 0.00 4.02
359 406 8.028652 AGGGTAATTAAAGAGAAGAGAGATGG 57.971 38.462 0.00 0.00 0.00 3.51
384 431 0.911769 CACTCAGCTCATTGGGGGTA 59.088 55.000 0.00 0.00 0.00 3.69
389 436 1.531423 ACTTGCACTCAGCTCATTGG 58.469 50.000 0.00 0.00 45.94 3.16
390 437 3.593096 TCTACTTGCACTCAGCTCATTG 58.407 45.455 0.00 0.00 45.94 2.82
406 453 4.221703 CACATGGTCTCCTCACTTTCTACT 59.778 45.833 0.00 0.00 0.00 2.57
432 479 7.013655 ACACCATAATCAAGACCAATAGCATTC 59.986 37.037 0.00 0.00 0.00 2.67
437 484 7.716560 TCATCACACCATAATCAAGACCAATAG 59.283 37.037 0.00 0.00 0.00 1.73
438 485 7.572814 TCATCACACCATAATCAAGACCAATA 58.427 34.615 0.00 0.00 0.00 1.90
454 507 5.776744 AGAATGCTTCTTTTTCATCACACC 58.223 37.500 0.00 0.00 36.36 4.16
570 624 8.141298 TCCCTCACATACAACATACTTCTTTA 57.859 34.615 0.00 0.00 0.00 1.85
575 629 8.548877 AGTAAATCCCTCACATACAACATACTT 58.451 33.333 0.00 0.00 0.00 2.24
605 659 1.478105 GCCCAAATAGCAACAAGGGAG 59.522 52.381 7.63 0.00 38.60 4.30
612 666 1.134729 CCCATGTGCCCAAATAGCAAC 60.135 52.381 0.00 0.00 43.02 4.17
619 673 0.251564 CACTACCCCATGTGCCCAAA 60.252 55.000 0.00 0.00 0.00 3.28
622 676 2.275418 CCACTACCCCATGTGCCC 59.725 66.667 0.00 0.00 33.26 5.36
668 722 2.296073 AGCCCCTAGGAGAGATTACG 57.704 55.000 11.48 0.00 33.47 3.18
669 723 4.081365 GCAATAGCCCCTAGGAGAGATTAC 60.081 50.000 11.48 0.00 33.47 1.89
670 724 4.097418 GCAATAGCCCCTAGGAGAGATTA 58.903 47.826 11.48 0.00 33.47 1.75
701 773 4.576330 ATCAGTTAAGTTGGGGAGGAAG 57.424 45.455 0.00 0.00 0.00 3.46
714 786 2.039216 TCACCGGGCTCAAATCAGTTAA 59.961 45.455 6.32 0.00 0.00 2.01
824 897 7.711339 GCTCCAGTATTATATTATTTCTCCCCG 59.289 40.741 0.00 0.00 0.00 5.73
1056 1152 0.600255 CACGCGGTTTCTCTTGGTCT 60.600 55.000 12.47 0.00 0.00 3.85
1323 1422 1.624312 TGGTAGTTATTGCCGTGGTGA 59.376 47.619 0.00 0.00 33.59 4.02
1335 1434 3.006110 CGAACTTGGTGACCTGGTAGTTA 59.994 47.826 10.98 0.00 0.00 2.24
1368 1467 4.373116 GGGAGTGGCAGCGACGAA 62.373 66.667 0.00 0.00 0.00 3.85
1644 1770 2.535012 TGCTTGATGTGTACACGGAA 57.465 45.000 20.61 11.74 0.00 4.30
1656 1782 1.002430 TCGGAGCTCTTGTTGCTTGAT 59.998 47.619 14.64 0.00 41.30 2.57
1756 1883 1.935873 CGGTTAGATCGACTGGACGTA 59.064 52.381 0.00 0.00 34.70 3.57
1757 1884 0.731417 CGGTTAGATCGACTGGACGT 59.269 55.000 0.00 0.00 34.70 4.34
1758 1885 1.012086 TCGGTTAGATCGACTGGACG 58.988 55.000 10.10 0.00 0.00 4.79
1822 2018 2.672961 TGCTTCGGTCTAGTCAATGG 57.327 50.000 0.00 0.00 0.00 3.16
1847 2066 3.462021 GCCTTGCCTCAGTATAGTCAAG 58.538 50.000 0.00 0.00 0.00 3.02
1924 2148 8.517878 TCCTGAAAGAAAATCTCTAGCATTTTG 58.482 33.333 13.86 3.04 34.30 2.44
1958 2185 9.807921 TTTGAACCTTGATAAAAATCTCTAGGT 57.192 29.630 0.75 0.75 45.52 3.08
1962 2189 9.750125 GTGTTTTGAACCTTGATAAAAATCTCT 57.250 29.630 0.00 0.00 0.00 3.10
1993 2220 4.100653 TCTGGCACATTTTGACATTTTCCA 59.899 37.500 0.00 0.00 44.75 3.53
2028 2256 0.817634 AGAGGACGAGGAGATCAGCG 60.818 60.000 0.00 0.00 0.00 5.18
2030 2258 2.158827 TCTCAGAGGACGAGGAGATCAG 60.159 54.545 0.00 0.00 31.82 2.90
2033 2261 3.117701 TGATTCTCAGAGGACGAGGAGAT 60.118 47.826 0.00 0.00 36.39 2.75
2034 2262 2.239907 TGATTCTCAGAGGACGAGGAGA 59.760 50.000 0.00 0.00 34.77 3.71
2036 2264 2.808906 TGATTCTCAGAGGACGAGGA 57.191 50.000 0.00 0.00 0.00 3.71
2037 2265 4.582656 ACTAATGATTCTCAGAGGACGAGG 59.417 45.833 0.00 0.00 0.00 4.63
2039 2267 6.378564 AGAAACTAATGATTCTCAGAGGACGA 59.621 38.462 0.00 0.00 30.94 4.20
2040 2268 6.568869 AGAAACTAATGATTCTCAGAGGACG 58.431 40.000 0.00 0.00 30.94 4.79
2041 2269 7.821846 ACAAGAAACTAATGATTCTCAGAGGAC 59.178 37.037 0.00 0.00 34.81 3.85
2042 2270 7.911651 ACAAGAAACTAATGATTCTCAGAGGA 58.088 34.615 0.00 0.00 34.81 3.71
2043 2271 9.092876 GTACAAGAAACTAATGATTCTCAGAGG 57.907 37.037 0.00 0.00 34.81 3.69
2045 2273 9.645059 CAGTACAAGAAACTAATGATTCTCAGA 57.355 33.333 0.00 0.00 34.81 3.27
2047 2275 9.424319 GACAGTACAAGAAACTAATGATTCTCA 57.576 33.333 0.00 0.00 34.81 3.27
2048 2276 8.587950 CGACAGTACAAGAAACTAATGATTCTC 58.412 37.037 0.00 0.00 34.81 2.87
2050 2278 8.462143 TCGACAGTACAAGAAACTAATGATTC 57.538 34.615 0.00 0.00 0.00 2.52
2051 2279 8.709646 GTTCGACAGTACAAGAAACTAATGATT 58.290 33.333 0.00 0.00 0.00 2.57
2054 2282 7.639162 AGTTCGACAGTACAAGAAACTAATG 57.361 36.000 0.00 0.00 0.00 1.90
2055 2283 8.658499 AAAGTTCGACAGTACAAGAAACTAAT 57.342 30.769 0.00 0.00 0.00 1.73
2057 2285 7.546667 ACAAAAGTTCGACAGTACAAGAAACTA 59.453 33.333 0.00 0.00 0.00 2.24
2058 2286 6.370718 ACAAAAGTTCGACAGTACAAGAAACT 59.629 34.615 0.00 0.00 0.00 2.66
2060 2288 6.730960 ACAAAAGTTCGACAGTACAAGAAA 57.269 33.333 0.00 0.00 0.00 2.52
2061 2289 6.183360 GGAACAAAAGTTCGACAGTACAAGAA 60.183 38.462 0.00 0.00 34.37 2.52
2062 2290 5.292589 GGAACAAAAGTTCGACAGTACAAGA 59.707 40.000 0.00 0.00 34.37 3.02
2063 2291 5.293569 AGGAACAAAAGTTCGACAGTACAAG 59.706 40.000 0.00 0.00 34.37 3.16
2064 2292 5.180271 AGGAACAAAAGTTCGACAGTACAA 58.820 37.500 0.00 0.00 34.37 2.41
2065 2293 4.761975 AGGAACAAAAGTTCGACAGTACA 58.238 39.130 0.00 0.00 34.37 2.90
2066 2294 5.729974 AAGGAACAAAAGTTCGACAGTAC 57.270 39.130 2.67 0.00 34.37 2.73
2067 2295 5.875910 TCAAAGGAACAAAAGTTCGACAGTA 59.124 36.000 2.67 0.00 34.37 2.74
2068 2296 4.698304 TCAAAGGAACAAAAGTTCGACAGT 59.302 37.500 2.67 0.00 34.37 3.55
2069 2297 5.163754 ACTCAAAGGAACAAAAGTTCGACAG 60.164 40.000 2.67 0.00 34.37 3.51
2070 2298 4.698304 ACTCAAAGGAACAAAAGTTCGACA 59.302 37.500 2.67 0.00 34.37 4.35
2071 2299 5.231265 ACTCAAAGGAACAAAAGTTCGAC 57.769 39.130 2.67 0.00 34.37 4.20
2072 2300 5.163693 GGAACTCAAAGGAACAAAAGTTCGA 60.164 40.000 0.00 0.00 42.09 3.71
2073 2301 5.034797 GGAACTCAAAGGAACAAAAGTTCG 58.965 41.667 0.00 0.00 42.09 3.95
2074 2302 5.961272 TGGAACTCAAAGGAACAAAAGTTC 58.039 37.500 4.83 4.83 41.02 3.01
2075 2303 5.714806 TCTGGAACTCAAAGGAACAAAAGTT 59.285 36.000 0.00 0.00 0.00 2.66
2076 2304 5.261216 TCTGGAACTCAAAGGAACAAAAGT 58.739 37.500 0.00 0.00 0.00 2.66
2077 2305 5.835113 TCTGGAACTCAAAGGAACAAAAG 57.165 39.130 0.00 0.00 0.00 2.27
2078 2306 6.597832 TTTCTGGAACTCAAAGGAACAAAA 57.402 33.333 0.00 0.00 0.00 2.44
2079 2307 6.790232 ATTTCTGGAACTCAAAGGAACAAA 57.210 33.333 0.00 0.00 0.00 2.83
2080 2308 6.790232 AATTTCTGGAACTCAAAGGAACAA 57.210 33.333 0.00 0.00 0.00 2.83
2081 2309 6.790232 AAATTTCTGGAACTCAAAGGAACA 57.210 33.333 0.00 0.00 0.00 3.18
2082 2310 9.764363 AATAAAATTTCTGGAACTCAAAGGAAC 57.236 29.630 0.00 0.00 0.00 3.62
2107 2335 8.680001 GGTTTACTTAGTCCTCAAAAGTGAAAA 58.320 33.333 0.00 0.00 32.62 2.29
2108 2336 7.830201 TGGTTTACTTAGTCCTCAAAAGTGAAA 59.170 33.333 0.00 0.00 32.62 2.69
2109 2337 7.340256 TGGTTTACTTAGTCCTCAAAAGTGAA 58.660 34.615 0.00 0.00 35.23 3.18
2110 2338 6.891388 TGGTTTACTTAGTCCTCAAAAGTGA 58.109 36.000 0.00 0.00 35.23 3.41
2111 2339 7.562454 TTGGTTTACTTAGTCCTCAAAAGTG 57.438 36.000 0.00 0.00 35.23 3.16
2112 2340 8.464404 GTTTTGGTTTACTTAGTCCTCAAAAGT 58.536 33.333 12.39 0.00 34.79 2.66
2113 2341 8.463607 TGTTTTGGTTTACTTAGTCCTCAAAAG 58.536 33.333 12.39 0.00 34.79 2.27
2114 2342 8.350852 TGTTTTGGTTTACTTAGTCCTCAAAA 57.649 30.769 9.77 9.77 32.67 2.44
2115 2343 7.941431 TGTTTTGGTTTACTTAGTCCTCAAA 57.059 32.000 0.00 0.00 0.00 2.69
2116 2344 9.280174 CTATGTTTTGGTTTACTTAGTCCTCAA 57.720 33.333 0.00 0.00 0.00 3.02
2117 2345 8.434392 ACTATGTTTTGGTTTACTTAGTCCTCA 58.566 33.333 0.00 0.00 32.81 3.86
2118 2346 8.843885 ACTATGTTTTGGTTTACTTAGTCCTC 57.156 34.615 0.00 0.00 32.81 3.71
2119 2347 9.716531 GTACTATGTTTTGGTTTACTTAGTCCT 57.283 33.333 0.00 0.00 36.88 3.85
2120 2348 8.939929 GGTACTATGTTTTGGTTTACTTAGTCC 58.060 37.037 0.00 0.00 36.88 3.85
2121 2349 8.650714 CGGTACTATGTTTTGGTTTACTTAGTC 58.349 37.037 0.00 0.00 36.88 2.59
2122 2350 7.603784 CCGGTACTATGTTTTGGTTTACTTAGT 59.396 37.037 0.00 0.00 38.24 2.24
2123 2351 7.818930 TCCGGTACTATGTTTTGGTTTACTTAG 59.181 37.037 0.00 0.00 0.00 2.18
2124 2352 7.675062 TCCGGTACTATGTTTTGGTTTACTTA 58.325 34.615 0.00 0.00 0.00 2.24
2125 2353 6.532826 TCCGGTACTATGTTTTGGTTTACTT 58.467 36.000 0.00 0.00 0.00 2.24
2126 2354 6.112927 TCCGGTACTATGTTTTGGTTTACT 57.887 37.500 0.00 0.00 0.00 2.24
2127 2355 6.204495 TGTTCCGGTACTATGTTTTGGTTTAC 59.796 38.462 12.78 0.00 0.00 2.01
2128 2356 6.294473 TGTTCCGGTACTATGTTTTGGTTTA 58.706 36.000 12.78 0.00 0.00 2.01
2129 2357 5.131784 TGTTCCGGTACTATGTTTTGGTTT 58.868 37.500 12.78 0.00 0.00 3.27
2130 2358 4.716794 TGTTCCGGTACTATGTTTTGGTT 58.283 39.130 12.78 0.00 0.00 3.67
2131 2359 4.354893 TGTTCCGGTACTATGTTTTGGT 57.645 40.909 12.78 0.00 0.00 3.67
2132 2360 5.454520 GTTTGTTCCGGTACTATGTTTTGG 58.545 41.667 12.78 0.00 0.00 3.28
2133 2361 5.141568 CGTTTGTTCCGGTACTATGTTTTG 58.858 41.667 12.78 0.00 0.00 2.44
2134 2362 4.319694 GCGTTTGTTCCGGTACTATGTTTT 60.320 41.667 12.78 0.00 0.00 2.43
2135 2363 3.187022 GCGTTTGTTCCGGTACTATGTTT 59.813 43.478 12.78 0.00 0.00 2.83
2136 2364 2.738314 GCGTTTGTTCCGGTACTATGTT 59.262 45.455 12.78 0.00 0.00 2.71
2137 2365 2.288948 TGCGTTTGTTCCGGTACTATGT 60.289 45.455 12.78 0.00 0.00 2.29
2138 2366 2.339418 TGCGTTTGTTCCGGTACTATG 58.661 47.619 12.78 7.16 0.00 2.23
2139 2367 2.747396 TGCGTTTGTTCCGGTACTAT 57.253 45.000 12.78 0.00 0.00 2.12
2140 2368 2.522836 TTGCGTTTGTTCCGGTACTA 57.477 45.000 12.78 1.64 0.00 1.82
2141 2369 1.666054 TTTGCGTTTGTTCCGGTACT 58.334 45.000 12.78 0.00 0.00 2.73
2142 2370 2.471862 TTTTGCGTTTGTTCCGGTAC 57.528 45.000 3.92 3.92 0.00 3.34
2143 2371 2.422832 AGTTTTTGCGTTTGTTCCGGTA 59.577 40.909 0.00 0.00 0.00 4.02
2144 2372 1.202817 AGTTTTTGCGTTTGTTCCGGT 59.797 42.857 0.00 0.00 0.00 5.28
2145 2373 1.915952 AGTTTTTGCGTTTGTTCCGG 58.084 45.000 0.00 0.00 0.00 5.14
2146 2374 2.028643 CCAAGTTTTTGCGTTTGTTCCG 59.971 45.455 0.00 0.00 32.79 4.30
2147 2375 2.997303 ACCAAGTTTTTGCGTTTGTTCC 59.003 40.909 0.00 0.00 32.79 3.62
2148 2376 4.434989 GGAACCAAGTTTTTGCGTTTGTTC 60.435 41.667 0.00 0.00 33.46 3.18
2149 2377 3.433957 GGAACCAAGTTTTTGCGTTTGTT 59.566 39.130 0.00 0.00 31.91 2.83
2150 2378 2.997303 GGAACCAAGTTTTTGCGTTTGT 59.003 40.909 0.00 0.00 31.91 2.83
2151 2379 2.996621 TGGAACCAAGTTTTTGCGTTTG 59.003 40.909 0.00 0.00 31.91 2.93
2152 2380 2.997303 GTGGAACCAAGTTTTTGCGTTT 59.003 40.909 0.00 0.00 31.91 3.60
2153 2381 2.612604 GTGGAACCAAGTTTTTGCGTT 58.387 42.857 0.00 0.00 33.37 4.84
2154 2382 1.468395 CGTGGAACCAAGTTTTTGCGT 60.468 47.619 0.00 0.00 32.79 5.24
2155 2383 1.196200 CGTGGAACCAAGTTTTTGCG 58.804 50.000 0.00 0.00 32.79 4.85
2156 2384 2.159296 ACTCGTGGAACCAAGTTTTTGC 60.159 45.455 6.66 0.00 32.79 3.68
2202 2430 9.994432 GTCAATAACTCATTATTTCCTGTCTTG 57.006 33.333 0.00 0.00 38.67 3.02
2204 2432 7.775561 GGGTCAATAACTCATTATTTCCTGTCT 59.224 37.037 0.00 0.00 38.67 3.41
2209 2437 5.298276 TGCGGGTCAATAACTCATTATTTCC 59.702 40.000 0.00 0.00 38.67 3.13
2210 2438 6.371809 TGCGGGTCAATAACTCATTATTTC 57.628 37.500 0.00 0.00 38.67 2.17
2214 2502 6.576662 TTTTTGCGGGTCAATAACTCATTA 57.423 33.333 0.00 0.00 34.12 1.90
2242 2530 9.601217 TTGAGCCTCTAAATAAGTCACTATTTC 57.399 33.333 0.00 0.00 34.21 2.17
2408 2815 7.617122 GCATAAATTTAGCATTTGGATAACGCG 60.617 37.037 3.53 3.53 0.00 6.01
2423 2842 5.200483 TCTTGAGGGGTGGCATAAATTTAG 58.800 41.667 3.94 0.00 0.00 1.85
2432 2851 3.935371 TTTTTCTTGAGGGGTGGCA 57.065 47.368 0.00 0.00 0.00 4.92
2448 2867 9.482627 TCGTTGAGGCATAAATTTAACAATTTT 57.517 25.926 1.21 0.00 39.19 1.82
2450 2869 9.482627 TTTCGTTGAGGCATAAATTTAACAATT 57.517 25.926 1.21 0.00 33.72 2.32
2555 3964 5.869753 AAGATTTGTCGATATAGCATGGC 57.130 39.130 0.00 0.00 0.00 4.40
2577 3986 9.743057 CACAACCACTCAACTTATTTTGAATTA 57.257 29.630 0.00 0.00 35.07 1.40
2578 3987 8.257306 ACACAACCACTCAACTTATTTTGAATT 58.743 29.630 0.00 0.00 35.07 2.17
2579 3988 7.781056 ACACAACCACTCAACTTATTTTGAAT 58.219 30.769 0.00 0.00 35.07 2.57
2580 3989 7.164230 ACACAACCACTCAACTTATTTTGAA 57.836 32.000 0.00 0.00 35.07 2.69
2581 3990 6.767524 ACACAACCACTCAACTTATTTTGA 57.232 33.333 0.00 0.00 34.30 2.69
2582 3991 7.703328 AGTACACAACCACTCAACTTATTTTG 58.297 34.615 0.00 0.00 0.00 2.44
2583 3992 7.875327 AGTACACAACCACTCAACTTATTTT 57.125 32.000 0.00 0.00 0.00 1.82
2584 3993 7.875327 AAGTACACAACCACTCAACTTATTT 57.125 32.000 0.00 0.00 0.00 1.40
2585 3994 7.443272 GGTAAGTACACAACCACTCAACTTATT 59.557 37.037 0.00 0.00 32.43 1.40
2590 3999 3.492011 CGGTAAGTACACAACCACTCAAC 59.508 47.826 10.70 0.00 32.55 3.18
2597 4006 1.868469 TGCACGGTAAGTACACAACC 58.132 50.000 0.00 0.00 0.00 3.77
2633 4084 8.288689 TCTAGGTTGCCCAAAAATTAGTTATC 57.711 34.615 0.00 0.00 0.00 1.75
2651 4102 5.791336 TCATGCGTGATATTCTCTAGGTT 57.209 39.130 3.97 0.00 0.00 3.50
2668 4119 7.472334 AACCCATTCCTGATAATAATCATGC 57.528 36.000 0.00 0.00 41.29 4.06
2694 4146 2.347731 GTCAATGGAGGAAACCGAGAC 58.652 52.381 0.00 0.00 0.00 3.36
2697 4149 0.672401 GCGTCAATGGAGGAAACCGA 60.672 55.000 0.00 0.00 0.00 4.69
2723 4175 0.109412 GAGAACCTGCATGCAAGTGC 60.109 55.000 22.19 20.25 45.25 4.40
2727 4179 1.202915 TCCTTGAGAACCTGCATGCAA 60.203 47.619 22.88 1.16 0.00 4.08
2848 4300 2.036604 TGTTGACATCGCTAGACACCAA 59.963 45.455 0.00 0.00 0.00 3.67
2861 4313 1.072331 AGCTCTCGGGTTTGTTGACAT 59.928 47.619 0.00 0.00 0.00 3.06
2862 4314 0.468226 AGCTCTCGGGTTTGTTGACA 59.532 50.000 0.00 0.00 0.00 3.58
2892 4344 2.111384 ACGATAGCAGTCACAGGGAAT 58.889 47.619 0.00 0.00 42.67 3.01
2960 4412 1.211457 CCTTCAGGTCTGGGAATGAGG 59.789 57.143 0.00 0.00 0.00 3.86
3006 4458 3.389866 AGGTGGGTACATAGGCACAATA 58.610 45.455 0.00 0.00 0.00 1.90
3106 4558 2.230025 ACTCGAGATTGTGGAGTGTCAG 59.770 50.000 21.68 0.00 42.28 3.51
3201 4653 1.388065 CGGCACCCTTGTTCACCAAA 61.388 55.000 0.00 0.00 31.20 3.28
3264 4716 5.042463 TGACCATGAACTTGTGTTTAGGA 57.958 39.130 0.00 0.00 36.39 2.94
3291 4743 3.600388 GAGTGTCCATCGTCCATCTTTT 58.400 45.455 0.00 0.00 0.00 2.27
3369 4822 6.108687 AGTACAATGTCGTGAATCACATCAT 58.891 36.000 14.24 13.05 31.79 2.45
3505 4959 6.729690 TTGAGGGAAAGTTGTTTCATCATT 57.270 33.333 0.66 0.00 43.52 2.57
3591 5045 3.762779 CACGAAGAATGCCAAAGGAATC 58.237 45.455 0.00 0.00 0.00 2.52
3610 5064 3.380142 ACGTGATCAACAATTTTGGCAC 58.620 40.909 0.00 0.00 0.00 5.01
3637 5091 5.641209 CCTTCATCTCTGAAACCAAGTACAG 59.359 44.000 0.00 0.00 40.78 2.74
3706 5160 7.757941 TTCAAATGTTGATGATGGACAAGTA 57.242 32.000 0.00 0.00 39.84 2.24
3707 5161 6.653526 TTCAAATGTTGATGATGGACAAGT 57.346 33.333 0.00 0.00 39.84 3.16
3728 5182 9.541143 TTGGTAAATTCATGGAAAGAAAGTTTC 57.459 29.630 7.57 7.57 0.00 2.78
3811 5265 5.597182 CCATGAATCACATCAAGGGAAAGAT 59.403 40.000 0.00 0.00 35.14 2.40
3812 5266 4.951715 CCATGAATCACATCAAGGGAAAGA 59.048 41.667 0.00 0.00 35.14 2.52
3813 5267 4.708421 ACCATGAATCACATCAAGGGAAAG 59.292 41.667 0.00 0.00 41.39 2.62
3814 5268 4.463539 CACCATGAATCACATCAAGGGAAA 59.536 41.667 0.00 0.00 41.39 3.13
3815 5269 4.018490 CACCATGAATCACATCAAGGGAA 58.982 43.478 0.00 0.00 41.39 3.97
3816 5270 3.010472 ACACCATGAATCACATCAAGGGA 59.990 43.478 0.00 0.00 41.39 4.20
3817 5271 3.359033 ACACCATGAATCACATCAAGGG 58.641 45.455 0.00 1.30 41.39 3.95
3818 5272 3.379372 GGACACCATGAATCACATCAAGG 59.621 47.826 0.00 0.00 42.48 3.61
3819 5273 4.267536 AGGACACCATGAATCACATCAAG 58.732 43.478 0.00 0.00 37.07 3.02
3820 5274 4.305539 AGGACACCATGAATCACATCAA 57.694 40.909 0.00 0.00 37.07 2.57
3821 5275 4.471025 AGTAGGACACCATGAATCACATCA 59.529 41.667 0.00 0.00 37.07 3.07
3822 5276 4.813161 CAGTAGGACACCATGAATCACATC 59.187 45.833 0.00 0.00 37.07 3.06
3823 5277 4.774124 CAGTAGGACACCATGAATCACAT 58.226 43.478 0.00 0.00 40.17 3.21
3824 5278 3.619733 GCAGTAGGACACCATGAATCACA 60.620 47.826 0.00 0.00 0.00 3.58
3825 5279 2.939103 GCAGTAGGACACCATGAATCAC 59.061 50.000 0.00 0.00 0.00 3.06
3826 5280 2.840038 AGCAGTAGGACACCATGAATCA 59.160 45.455 0.00 0.00 0.00 2.57
3827 5281 3.550437 AGCAGTAGGACACCATGAATC 57.450 47.619 0.00 0.00 0.00 2.52
3828 5282 4.680708 CGTAAGCAGTAGGACACCATGAAT 60.681 45.833 0.00 0.00 0.00 2.57
3829 5283 3.368013 CGTAAGCAGTAGGACACCATGAA 60.368 47.826 0.00 0.00 0.00 2.57
3830 5284 2.165641 CGTAAGCAGTAGGACACCATGA 59.834 50.000 0.00 0.00 0.00 3.07
3831 5285 2.165641 TCGTAAGCAGTAGGACACCATG 59.834 50.000 0.00 0.00 37.18 3.66
3832 5286 2.453521 TCGTAAGCAGTAGGACACCAT 58.546 47.619 0.00 0.00 37.18 3.55
3833 5287 1.913778 TCGTAAGCAGTAGGACACCA 58.086 50.000 0.00 0.00 37.18 4.17
3834 5288 2.230750 ACTTCGTAAGCAGTAGGACACC 59.769 50.000 0.00 0.00 43.64 4.16
3835 5289 3.572604 ACTTCGTAAGCAGTAGGACAC 57.427 47.619 0.00 0.00 43.64 3.67
3836 5290 4.038282 TGAAACTTCGTAAGCAGTAGGACA 59.962 41.667 0.00 0.00 45.08 4.02
3837 5291 4.553323 TGAAACTTCGTAAGCAGTAGGAC 58.447 43.478 0.00 0.00 45.08 3.85
3838 5292 4.859304 TGAAACTTCGTAAGCAGTAGGA 57.141 40.909 0.00 0.00 45.08 2.94
3839 5293 4.330074 CCATGAAACTTCGTAAGCAGTAGG 59.670 45.833 0.00 0.00 45.08 3.18
3840 5294 5.168569 TCCATGAAACTTCGTAAGCAGTAG 58.831 41.667 0.00 0.00 45.08 2.57
3841 5295 5.142061 TCCATGAAACTTCGTAAGCAGTA 57.858 39.130 0.00 0.00 45.08 2.74
3843 5297 3.997021 ACTCCATGAAACTTCGTAAGCAG 59.003 43.478 0.00 0.00 36.38 4.24
3844 5298 3.745975 CACTCCATGAAACTTCGTAAGCA 59.254 43.478 0.00 0.00 37.18 3.91
3845 5299 3.746492 ACACTCCATGAAACTTCGTAAGC 59.254 43.478 0.00 0.00 37.18 3.09
3846 5300 5.924475 AACACTCCATGAAACTTCGTAAG 57.076 39.130 0.00 0.00 0.00 2.34
3847 5301 6.518493 AGTAACACTCCATGAAACTTCGTAA 58.482 36.000 0.00 0.00 0.00 3.18
3848 5302 6.092955 AGTAACACTCCATGAAACTTCGTA 57.907 37.500 0.00 0.00 0.00 3.43
3849 5303 4.957296 AGTAACACTCCATGAAACTTCGT 58.043 39.130 0.00 0.00 0.00 3.85
3850 5304 5.517037 GAGTAACACTCCATGAAACTTCG 57.483 43.478 0.00 0.00 39.28 3.79
3878 5332 7.310664 GCCGTAGCTTTTATTTAAGAACCTTT 58.689 34.615 0.00 0.00 35.50 3.11
3919 5373 8.804688 GTTTGCATAAAAGTGTAAACATACCA 57.195 30.769 13.23 0.00 46.86 3.25
3925 5379 6.201997 CCTTGGGTTTGCATAAAAGTGTAAAC 59.798 38.462 10.70 10.70 46.90 2.01
3992 5446 2.315176 TGTTGATGGGGAGTGGTTTTG 58.685 47.619 0.00 0.00 0.00 2.44
3993 5447 2.765689 TGTTGATGGGGAGTGGTTTT 57.234 45.000 0.00 0.00 0.00 2.43
3994 5448 2.765689 TTGTTGATGGGGAGTGGTTT 57.234 45.000 0.00 0.00 0.00 3.27
3997 5451 2.102578 GGATTTGTTGATGGGGAGTGG 58.897 52.381 0.00 0.00 0.00 4.00
4002 5456 5.264395 ACTCTAAAGGATTTGTTGATGGGG 58.736 41.667 0.00 0.00 39.63 4.96
4009 5463 7.309438 GGCATGAAGAACTCTAAAGGATTTGTT 60.309 37.037 0.00 0.00 39.63 2.83
4012 5466 5.355350 CGGCATGAAGAACTCTAAAGGATTT 59.645 40.000 0.00 0.00 43.42 2.17
4023 5478 4.761739 TGAAGAAATTCGGCATGAAGAACT 59.238 37.500 0.00 0.00 40.65 3.01
4077 5532 9.816787 AAATAAAGATAACAAAGGAAGGTACCA 57.183 29.630 15.94 0.00 0.00 3.25
4110 5565 2.251893 GCGAGTTCAAGTACTTCCTCG 58.748 52.381 27.99 27.99 43.31 4.63
4117 5572 2.380084 TGATGGGCGAGTTCAAGTAC 57.620 50.000 0.00 0.00 0.00 2.73
4123 5578 2.695314 GTCCATGATGGGCGAGTTC 58.305 57.895 12.26 0.00 38.32 3.01
4124 5579 4.963878 GTCCATGATGGGCGAGTT 57.036 55.556 12.26 0.00 38.32 3.01
4130 5585 3.894759 AGTTTGAGATGTCCATGATGGG 58.105 45.455 12.26 0.00 38.32 4.00
4243 5698 8.908786 TGACTCAACAATCTTCACTAAGAAAT 57.091 30.769 0.00 0.00 44.75 2.17



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.