Multiple sequence alignment - TraesCS1B01G277100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G277100 | chr1B | 100.000 | 4334 | 0 | 0 | 1 | 4334 | 484693858 | 484689525 | 0.000000e+00 | 8004.0 |
1 | TraesCS1B01G277100 | chr1B | 91.272 | 1077 | 92 | 2 | 2734 | 3809 | 484463754 | 484462679 | 0.000000e+00 | 1467.0 |
2 | TraesCS1B01G277100 | chr1B | 86.616 | 1046 | 86 | 23 | 802 | 1818 | 484465437 | 484464417 | 0.000000e+00 | 1107.0 |
3 | TraesCS1B01G277100 | chr1B | 77.867 | 497 | 84 | 21 | 1128 | 1599 | 664317874 | 664318369 | 7.090000e-73 | 285.0 |
4 | TraesCS1B01G277100 | chr1B | 83.621 | 232 | 26 | 8 | 342 | 570 | 605924042 | 605923820 | 1.580000e-49 | 207.0 |
5 | TraesCS1B01G277100 | chr1B | 81.452 | 124 | 23 | 0 | 2731 | 2854 | 656183492 | 656183615 | 7.670000e-18 | 102.0 |
6 | TraesCS1B01G277100 | chr1A | 90.685 | 1868 | 89 | 31 | 1 | 1791 | 461645033 | 461643174 | 0.000000e+00 | 2407.0 |
7 | TraesCS1B01G277100 | chr1A | 91.613 | 930 | 69 | 9 | 2601 | 3525 | 461642552 | 461641627 | 0.000000e+00 | 1277.0 |
8 | TraesCS1B01G277100 | chr1A | 88.507 | 931 | 77 | 12 | 812 | 1723 | 461524228 | 461523309 | 0.000000e+00 | 1099.0 |
9 | TraesCS1B01G277100 | chr1A | 89.157 | 747 | 77 | 4 | 2735 | 3478 | 461522602 | 461521857 | 0.000000e+00 | 928.0 |
10 | TraesCS1B01G277100 | chr1A | 90.377 | 478 | 42 | 3 | 3857 | 4334 | 461641773 | 461641300 | 3.680000e-175 | 625.0 |
11 | TraesCS1B01G277100 | chr1A | 93.117 | 247 | 14 | 2 | 1782 | 2028 | 461643122 | 461642879 | 4.120000e-95 | 359.0 |
12 | TraesCS1B01G277100 | chr1A | 100.000 | 45 | 0 | 0 | 2158 | 2202 | 461642838 | 461642794 | 2.780000e-12 | 84.2 |
13 | TraesCS1B01G277100 | chr1A | 95.745 | 47 | 1 | 1 | 2450 | 2496 | 461642597 | 461642552 | 1.670000e-09 | 75.0 |
14 | TraesCS1B01G277100 | chr1D | 95.004 | 1281 | 46 | 10 | 754 | 2028 | 362132821 | 362131553 | 0.000000e+00 | 1995.0 |
15 | TraesCS1B01G277100 | chr1D | 93.990 | 782 | 47 | 0 | 2601 | 3382 | 362131146 | 362130365 | 0.000000e+00 | 1184.0 |
16 | TraesCS1B01G277100 | chr1D | 88.498 | 939 | 101 | 6 | 2734 | 3670 | 362010696 | 362009763 | 0.000000e+00 | 1129.0 |
17 | TraesCS1B01G277100 | chr1D | 86.915 | 1047 | 84 | 21 | 802 | 1819 | 362013419 | 362012397 | 0.000000e+00 | 1125.0 |
18 | TraesCS1B01G277100 | chr1D | 88.031 | 518 | 36 | 11 | 3817 | 4334 | 362130381 | 362129890 | 1.340000e-164 | 590.0 |
19 | TraesCS1B01G277100 | chr1D | 77.310 | 617 | 104 | 20 | 1124 | 1710 | 476872643 | 476872033 | 8.980000e-87 | 331.0 |
20 | TraesCS1B01G277100 | chr1D | 92.511 | 227 | 13 | 4 | 2212 | 2436 | 362131398 | 362131174 | 5.410000e-84 | 322.0 |
21 | TraesCS1B01G277100 | chr1D | 82.833 | 233 | 27 | 8 | 342 | 570 | 445064221 | 445063998 | 3.420000e-46 | 196.0 |
22 | TraesCS1B01G277100 | chr1D | 85.294 | 102 | 9 | 4 | 3711 | 3811 | 362009770 | 362009674 | 2.760000e-17 | 100.0 |
23 | TraesCS1B01G277100 | chr1D | 90.141 | 71 | 6 | 1 | 2158 | 2227 | 362131512 | 362131442 | 1.660000e-14 | 91.6 |
24 | TraesCS1B01G277100 | chr4D | 85.532 | 235 | 25 | 5 | 330 | 563 | 4091886 | 4091660 | 2.010000e-58 | 237.0 |
25 | TraesCS1B01G277100 | chr5A | 85.590 | 229 | 21 | 4 | 327 | 552 | 476664785 | 476665004 | 3.370000e-56 | 230.0 |
26 | TraesCS1B01G277100 | chr6A | 82.883 | 222 | 28 | 3 | 343 | 563 | 11041805 | 11041593 | 1.590000e-44 | 191.0 |
27 | TraesCS1B01G277100 | chr2B | 85.484 | 186 | 20 | 5 | 327 | 509 | 100983430 | 100983611 | 2.060000e-43 | 187.0 |
28 | TraesCS1B01G277100 | chr4B | 85.246 | 183 | 23 | 4 | 330 | 509 | 481005246 | 481005065 | 7.400000e-43 | 185.0 |
29 | TraesCS1B01G277100 | chr4A | 81.466 | 232 | 32 | 4 | 330 | 559 | 625898882 | 625899104 | 3.440000e-41 | 180.0 |
30 | TraesCS1B01G277100 | chr2D | 83.871 | 186 | 23 | 5 | 327 | 509 | 64626567 | 64626748 | 2.070000e-38 | 171.0 |
31 | TraesCS1B01G277100 | chr2D | 97.143 | 35 | 1 | 0 | 130 | 164 | 533780752 | 533780718 | 4.680000e-05 | 60.2 |
32 | TraesCS1B01G277100 | chr3D | 87.097 | 124 | 14 | 2 | 1439 | 1561 | 326120752 | 326120630 | 5.840000e-29 | 139.0 |
33 | TraesCS1B01G277100 | chr3A | 86.290 | 124 | 15 | 2 | 1439 | 1561 | 438810543 | 438810665 | 2.720000e-27 | 134.0 |
34 | TraesCS1B01G277100 | chr5B | 87.629 | 97 | 9 | 2 | 578 | 672 | 137661875 | 137661970 | 4.580000e-20 | 110.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G277100 | chr1B | 484689525 | 484693858 | 4333 | True | 8004.000000 | 8004 | 100.000000 | 1 | 4334 | 1 | chr1B.!!$R1 | 4333 |
1 | TraesCS1B01G277100 | chr1B | 484462679 | 484465437 | 2758 | True | 1287.000000 | 1467 | 88.944000 | 802 | 3809 | 2 | chr1B.!!$R3 | 3007 |
2 | TraesCS1B01G277100 | chr1A | 461521857 | 461524228 | 2371 | True | 1013.500000 | 1099 | 88.832000 | 812 | 3478 | 2 | chr1A.!!$R1 | 2666 |
3 | TraesCS1B01G277100 | chr1A | 461641300 | 461645033 | 3733 | True | 804.533333 | 2407 | 93.589500 | 1 | 4334 | 6 | chr1A.!!$R2 | 4333 |
4 | TraesCS1B01G277100 | chr1D | 362129890 | 362132821 | 2931 | True | 836.520000 | 1995 | 91.935400 | 754 | 4334 | 5 | chr1D.!!$R4 | 3580 |
5 | TraesCS1B01G277100 | chr1D | 362009674 | 362013419 | 3745 | True | 784.666667 | 1129 | 86.902333 | 802 | 3811 | 3 | chr1D.!!$R3 | 3009 |
6 | TraesCS1B01G277100 | chr1D | 476872033 | 476872643 | 610 | True | 331.000000 | 331 | 77.310000 | 1124 | 1710 | 1 | chr1D.!!$R2 | 586 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
406 | 453 | 0.609957 | CCCCAATGAGCTGAGTGCAA | 60.610 | 55.0 | 0.00 | 0.0 | 45.94 | 4.08 | F |
1368 | 1467 | 0.038526 | CCAAGTTCGTCTACGCCACT | 60.039 | 55.0 | 0.00 | 0.0 | 39.60 | 4.00 | F |
2507 | 3914 | 0.037326 | CTGGTTGTTGAGAGCGCCTA | 60.037 | 55.0 | 2.29 | 0.0 | 0.00 | 3.93 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1757 | 1884 | 0.731417 | CGGTTAGATCGACTGGACGT | 59.269 | 55.0 | 0.00 | 0.00 | 34.70 | 4.34 | R |
2723 | 4175 | 0.109412 | GAGAACCTGCATGCAAGTGC | 60.109 | 55.0 | 22.19 | 20.25 | 45.25 | 4.40 | R |
3833 | 5287 | 1.913778 | TCGTAAGCAGTAGGACACCA | 58.086 | 50.0 | 0.00 | 0.00 | 37.18 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
125 | 128 | 9.703892 | TTGTGATTGTTTGTATTTTTCCTATGG | 57.296 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
126 | 129 | 9.083422 | TGTGATTGTTTGTATTTTTCCTATGGA | 57.917 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
128 | 131 | 9.527157 | TGATTGTTTGTATTTTTCCTATGGAGA | 57.473 | 29.630 | 0.00 | 0.00 | 31.21 | 3.71 |
137 | 159 | 9.396022 | GTATTTTTCCTATGGAGATTGACTTCA | 57.604 | 33.333 | 0.00 | 0.00 | 38.62 | 3.02 |
145 | 167 | 7.555554 | CCTATGGAGATTGACTTCAGACAAATT | 59.444 | 37.037 | 0.00 | 0.00 | 37.56 | 1.82 |
180 | 202 | 3.277142 | AAAAAGATCGGGGCGAGTAAT | 57.723 | 42.857 | 0.00 | 0.00 | 39.91 | 1.89 |
282 | 304 | 7.326063 | GTGTAATTTTTACCTGTGATCTGTTGC | 59.674 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
298 | 320 | 6.263516 | TCTGTTGCGTTATAGTTGTACTCT | 57.736 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
301 | 323 | 6.684686 | TGTTGCGTTATAGTTGTACTCTCTT | 58.315 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
303 | 325 | 6.754702 | TGCGTTATAGTTGTACTCTCTTCT | 57.245 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
304 | 326 | 6.783162 | TGCGTTATAGTTGTACTCTCTTCTC | 58.217 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
305 | 327 | 6.598457 | TGCGTTATAGTTGTACTCTCTTCTCT | 59.402 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
306 | 328 | 7.120873 | TGCGTTATAGTTGTACTCTCTTCTCTT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
307 | 329 | 7.969508 | GCGTTATAGTTGTACTCTCTTCTCTTT | 59.030 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
314 | 336 | 9.084533 | AGTTGTACTCTCTTCTCTTTATGAAGT | 57.915 | 33.333 | 0.00 | 0.00 | 41.04 | 3.01 |
317 | 339 | 9.516546 | TGTACTCTCTTCTCTTTATGAAGTGTA | 57.483 | 33.333 | 0.00 | 0.00 | 41.04 | 2.90 |
318 | 340 | 9.997482 | GTACTCTCTTCTCTTTATGAAGTGTAG | 57.003 | 37.037 | 0.00 | 0.00 | 41.04 | 2.74 |
319 | 341 | 8.644374 | ACTCTCTTCTCTTTATGAAGTGTAGT | 57.356 | 34.615 | 0.00 | 0.00 | 41.04 | 2.73 |
320 | 342 | 9.742144 | ACTCTCTTCTCTTTATGAAGTGTAGTA | 57.258 | 33.333 | 0.00 | 0.00 | 41.04 | 1.82 |
359 | 406 | 2.331194 | GCATTGGAATGTGCAAGTCAC | 58.669 | 47.619 | 0.00 | 0.00 | 45.82 | 3.67 |
384 | 431 | 7.625682 | ACCATCTCTCTTCTCTTTAATTACCCT | 59.374 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
389 | 436 | 6.614496 | TCTCTTCTCTTTAATTACCCTACCCC | 59.386 | 42.308 | 0.00 | 0.00 | 0.00 | 4.95 |
390 | 437 | 5.668991 | TCTTCTCTTTAATTACCCTACCCCC | 59.331 | 44.000 | 0.00 | 0.00 | 0.00 | 5.40 |
406 | 453 | 0.609957 | CCCCAATGAGCTGAGTGCAA | 60.610 | 55.000 | 0.00 | 0.00 | 45.94 | 4.08 |
432 | 479 | 2.847327 | AGTGAGGAGACCATGTGTTG | 57.153 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
437 | 484 | 2.421424 | GAGGAGACCATGTGTTGAATGC | 59.579 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
438 | 485 | 2.040813 | AGGAGACCATGTGTTGAATGCT | 59.959 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
454 | 507 | 8.407832 | TGTTGAATGCTATTGGTCTTGATTATG | 58.592 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
570 | 624 | 8.898761 | TGTCAAACATACACTTATTTGTGAACT | 58.101 | 29.630 | 1.47 | 0.00 | 40.12 | 3.01 |
619 | 673 | 2.279173 | ACTTCCCTCCCTTGTTGCTAT | 58.721 | 47.619 | 0.00 | 0.00 | 0.00 | 2.97 |
622 | 676 | 3.085952 | TCCCTCCCTTGTTGCTATTTG | 57.914 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
646 | 700 | 1.564348 | ACATGGGGTAGTGGGAACATC | 59.436 | 52.381 | 0.00 | 0.00 | 46.14 | 3.06 |
668 | 722 | 0.679960 | CCCGTGGTTGGAGGAATTCC | 60.680 | 60.000 | 17.31 | 17.31 | 46.98 | 3.01 |
683 | 755 | 5.081032 | AGGAATTCCGTAATCTCTCCTAGG | 58.919 | 45.833 | 18.82 | 0.82 | 42.08 | 3.02 |
714 | 786 | 2.539081 | GGGTGCTTCCTCCCCAACT | 61.539 | 63.158 | 0.00 | 0.00 | 38.57 | 3.16 |
746 | 818 | 4.340617 | TGAGCCCGGTGATTTCTTAAAAT | 58.659 | 39.130 | 0.00 | 0.00 | 37.80 | 1.82 |
751 | 823 | 7.672240 | AGCCCGGTGATTTCTTAAAATAAAAA | 58.328 | 30.769 | 0.00 | 0.00 | 35.21 | 1.94 |
752 | 824 | 7.817478 | AGCCCGGTGATTTCTTAAAATAAAAAG | 59.183 | 33.333 | 0.00 | 0.00 | 35.21 | 2.27 |
753 | 825 | 7.064134 | GCCCGGTGATTTCTTAAAATAAAAAGG | 59.936 | 37.037 | 0.00 | 0.00 | 35.21 | 3.11 |
824 | 897 | 8.033038 | TGTAGTACAATGATTGACAGTAAGACC | 58.967 | 37.037 | 12.80 | 0.00 | 0.00 | 3.85 |
982 | 1075 | 5.243954 | TCGAGAAGATCCATCGGATTAACAT | 59.756 | 40.000 | 10.73 | 0.00 | 43.27 | 2.71 |
1308 | 1407 | 2.632544 | CCACGACGACCTACTGGCA | 61.633 | 63.158 | 0.00 | 0.00 | 36.63 | 4.92 |
1368 | 1467 | 0.038526 | CCAAGTTCGTCTACGCCACT | 60.039 | 55.000 | 0.00 | 0.00 | 39.60 | 4.00 |
1644 | 1770 | 2.430367 | GTGCACCGAGGGTTCCTT | 59.570 | 61.111 | 5.22 | 0.00 | 31.76 | 3.36 |
1656 | 1782 | 1.202675 | GGGTTCCTTTCCGTGTACACA | 60.203 | 52.381 | 24.98 | 4.29 | 0.00 | 3.72 |
1756 | 1883 | 4.691685 | TTCATAAATGAGCGTTTGGTACGT | 59.308 | 37.500 | 0.00 | 0.00 | 41.43 | 3.57 |
1757 | 1884 | 5.868258 | TTCATAAATGAGCGTTTGGTACGTA | 59.132 | 36.000 | 0.00 | 0.00 | 41.43 | 3.57 |
1758 | 1885 | 6.183360 | TTCATAAATGAGCGTTTGGTACGTAC | 60.183 | 38.462 | 17.56 | 17.56 | 41.43 | 3.67 |
1759 | 1886 | 9.234849 | TTCATAAATGAGCGTTTGGTACGTACG | 62.235 | 40.741 | 18.98 | 15.01 | 41.43 | 3.67 |
1835 | 2051 | 2.744202 | CAACACAGCCATTGACTAGACC | 59.256 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1847 | 2066 | 1.014564 | ACTAGACCGAAGCAAAGCGC | 61.015 | 55.000 | 0.00 | 0.00 | 42.91 | 5.92 |
1943 | 2167 | 8.940952 | GTCACTACAAAATGCTAGAGATTTTCT | 58.059 | 33.333 | 9.01 | 3.11 | 40.06 | 2.52 |
1993 | 2220 | 7.639113 | TTTATCAAGGTTCAAAACACAGACT | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2028 | 2256 | 7.437862 | TCAAAATGTGCCAGAAAAATAAGACAC | 59.562 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
2030 | 2258 | 3.234386 | GTGCCAGAAAAATAAGACACGC | 58.766 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2033 | 2261 | 3.188460 | GCCAGAAAAATAAGACACGCTGA | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
2034 | 2262 | 4.142600 | GCCAGAAAAATAAGACACGCTGAT | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2036 | 2264 | 5.352569 | CCAGAAAAATAAGACACGCTGATCT | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2037 | 2265 | 6.456181 | CCAGAAAAATAAGACACGCTGATCTC | 60.456 | 42.308 | 0.00 | 0.00 | 0.00 | 2.75 |
2039 | 2267 | 4.744795 | AAATAAGACACGCTGATCTCCT | 57.255 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
2040 | 2268 | 4.314740 | AATAAGACACGCTGATCTCCTC | 57.685 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2041 | 2269 | 0.453793 | AAGACACGCTGATCTCCTCG | 59.546 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2042 | 2270 | 0.678366 | AGACACGCTGATCTCCTCGT | 60.678 | 55.000 | 0.00 | 0.00 | 35.35 | 4.18 |
2043 | 2271 | 0.248296 | GACACGCTGATCTCCTCGTC | 60.248 | 60.000 | 0.00 | 0.00 | 32.38 | 4.20 |
2045 | 2273 | 1.077357 | ACGCTGATCTCCTCGTCCT | 60.077 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
2047 | 2275 | 0.817634 | CGCTGATCTCCTCGTCCTCT | 60.818 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2048 | 2276 | 0.667993 | GCTGATCTCCTCGTCCTCTG | 59.332 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2050 | 2278 | 2.221169 | CTGATCTCCTCGTCCTCTGAG | 58.779 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
2051 | 2279 | 1.840635 | TGATCTCCTCGTCCTCTGAGA | 59.159 | 52.381 | 6.17 | 0.00 | 38.17 | 3.27 |
2054 | 2282 | 2.925724 | TCTCCTCGTCCTCTGAGAATC | 58.074 | 52.381 | 6.17 | 0.00 | 35.43 | 2.52 |
2073 | 2301 | 9.424319 | TGAGAATCATTAGTTTCTTGTACTGTC | 57.576 | 33.333 | 0.00 | 0.00 | 42.56 | 3.51 |
2074 | 2302 | 8.467402 | AGAATCATTAGTTTCTTGTACTGTCG | 57.533 | 34.615 | 0.00 | 0.00 | 31.39 | 4.35 |
2075 | 2303 | 8.304596 | AGAATCATTAGTTTCTTGTACTGTCGA | 58.695 | 33.333 | 0.00 | 0.00 | 31.39 | 4.20 |
2076 | 2304 | 8.827177 | AATCATTAGTTTCTTGTACTGTCGAA | 57.173 | 30.769 | 0.00 | 0.00 | 0.00 | 3.71 |
2077 | 2305 | 7.633361 | TCATTAGTTTCTTGTACTGTCGAAC | 57.367 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2078 | 2306 | 7.431249 | TCATTAGTTTCTTGTACTGTCGAACT | 58.569 | 34.615 | 0.00 | 1.53 | 0.00 | 3.01 |
2079 | 2307 | 7.924412 | TCATTAGTTTCTTGTACTGTCGAACTT | 59.076 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2080 | 2308 | 8.548721 | CATTAGTTTCTTGTACTGTCGAACTTT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2081 | 2309 | 6.980051 | AGTTTCTTGTACTGTCGAACTTTT | 57.020 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2082 | 2310 | 6.772078 | AGTTTCTTGTACTGTCGAACTTTTG | 58.228 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2083 | 2311 | 6.370718 | AGTTTCTTGTACTGTCGAACTTTTGT | 59.629 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2084 | 2312 | 6.730960 | TTCTTGTACTGTCGAACTTTTGTT | 57.269 | 33.333 | 0.00 | 0.00 | 46.75 | 2.83 |
2097 | 2325 | 5.993748 | AACTTTTGTTCCTTTGAGTTCCA | 57.006 | 34.783 | 0.00 | 0.00 | 38.45 | 3.53 |
2098 | 2326 | 5.582689 | ACTTTTGTTCCTTTGAGTTCCAG | 57.417 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
2099 | 2327 | 5.261216 | ACTTTTGTTCCTTTGAGTTCCAGA | 58.739 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
2100 | 2328 | 5.714806 | ACTTTTGTTCCTTTGAGTTCCAGAA | 59.285 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2101 | 2329 | 6.210584 | ACTTTTGTTCCTTTGAGTTCCAGAAA | 59.789 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2102 | 2330 | 6.790232 | TTTGTTCCTTTGAGTTCCAGAAAT | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2103 | 2331 | 6.790232 | TTGTTCCTTTGAGTTCCAGAAATT | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2104 | 2332 | 6.790232 | TGTTCCTTTGAGTTCCAGAAATTT | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2105 | 2333 | 7.181569 | TGTTCCTTTGAGTTCCAGAAATTTT | 57.818 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2106 | 2334 | 8.299990 | TGTTCCTTTGAGTTCCAGAAATTTTA | 57.700 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
2107 | 2335 | 8.923270 | TGTTCCTTTGAGTTCCAGAAATTTTAT | 58.077 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2108 | 2336 | 9.764363 | GTTCCTTTGAGTTCCAGAAATTTTATT | 57.236 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2133 | 2361 | 7.797038 | TTCACTTTTGAGGACTAAGTAAACC | 57.203 | 36.000 | 0.00 | 0.00 | 31.71 | 3.27 |
2134 | 2362 | 6.891388 | TCACTTTTGAGGACTAAGTAAACCA | 58.109 | 36.000 | 0.00 | 0.00 | 31.30 | 3.67 |
2135 | 2363 | 7.340256 | TCACTTTTGAGGACTAAGTAAACCAA | 58.660 | 34.615 | 0.00 | 0.00 | 31.30 | 3.67 |
2136 | 2364 | 7.830201 | TCACTTTTGAGGACTAAGTAAACCAAA | 59.170 | 33.333 | 0.00 | 0.00 | 31.30 | 3.28 |
2137 | 2365 | 8.463607 | CACTTTTGAGGACTAAGTAAACCAAAA | 58.536 | 33.333 | 0.00 | 0.00 | 31.30 | 2.44 |
2138 | 2366 | 8.464404 | ACTTTTGAGGACTAAGTAAACCAAAAC | 58.536 | 33.333 | 0.00 | 0.00 | 30.75 | 2.43 |
2139 | 2367 | 7.941431 | TTTGAGGACTAAGTAAACCAAAACA | 57.059 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2140 | 2368 | 8.528044 | TTTGAGGACTAAGTAAACCAAAACAT | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
2141 | 2369 | 9.629878 | TTTGAGGACTAAGTAAACCAAAACATA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2142 | 2370 | 8.842358 | TGAGGACTAAGTAAACCAAAACATAG | 57.158 | 34.615 | 0.00 | 0.00 | 0.00 | 2.23 |
2143 | 2371 | 8.434392 | TGAGGACTAAGTAAACCAAAACATAGT | 58.566 | 33.333 | 0.00 | 0.00 | 33.97 | 2.12 |
2144 | 2372 | 9.933723 | GAGGACTAAGTAAACCAAAACATAGTA | 57.066 | 33.333 | 0.00 | 0.00 | 32.08 | 1.82 |
2145 | 2373 | 9.716531 | AGGACTAAGTAAACCAAAACATAGTAC | 57.283 | 33.333 | 0.00 | 0.00 | 33.09 | 2.73 |
2146 | 2374 | 8.939929 | GGACTAAGTAAACCAAAACATAGTACC | 58.060 | 37.037 | 0.00 | 0.00 | 32.08 | 3.34 |
2147 | 2375 | 8.538409 | ACTAAGTAAACCAAAACATAGTACCG | 57.462 | 34.615 | 0.00 | 0.00 | 30.62 | 4.02 |
2148 | 2376 | 6.806388 | AAGTAAACCAAAACATAGTACCGG | 57.194 | 37.500 | 0.00 | 0.00 | 0.00 | 5.28 |
2149 | 2377 | 6.112927 | AGTAAACCAAAACATAGTACCGGA | 57.887 | 37.500 | 9.46 | 0.00 | 0.00 | 5.14 |
2150 | 2378 | 6.532826 | AGTAAACCAAAACATAGTACCGGAA | 58.467 | 36.000 | 9.46 | 0.00 | 0.00 | 4.30 |
2151 | 2379 | 5.694231 | AAACCAAAACATAGTACCGGAAC | 57.306 | 39.130 | 9.46 | 0.00 | 0.00 | 3.62 |
2152 | 2380 | 4.354893 | ACCAAAACATAGTACCGGAACA | 57.645 | 40.909 | 9.46 | 0.00 | 0.00 | 3.18 |
2153 | 2381 | 4.716794 | ACCAAAACATAGTACCGGAACAA | 58.283 | 39.130 | 9.46 | 0.00 | 0.00 | 2.83 |
2154 | 2382 | 5.131784 | ACCAAAACATAGTACCGGAACAAA | 58.868 | 37.500 | 9.46 | 0.00 | 0.00 | 2.83 |
2155 | 2383 | 5.008911 | ACCAAAACATAGTACCGGAACAAAC | 59.991 | 40.000 | 9.46 | 0.00 | 0.00 | 2.93 |
2156 | 2384 | 4.996062 | AAACATAGTACCGGAACAAACG | 57.004 | 40.909 | 9.46 | 0.00 | 0.00 | 3.60 |
2214 | 2502 | 9.354673 | TGAAGTTAAATCTTCAAGACAGGAAAT | 57.645 | 29.630 | 6.15 | 0.00 | 46.88 | 2.17 |
2395 | 2802 | 1.202348 | GAGCCAGCCAAAGCGTTAAAT | 59.798 | 47.619 | 0.00 | 0.00 | 46.67 | 1.40 |
2408 | 2815 | 1.329599 | CGTTAAATAACTCGGGCAGCC | 59.670 | 52.381 | 1.26 | 1.26 | 34.12 | 4.85 |
2423 | 2842 | 0.592247 | CAGCCGCGTTATCCAAATGC | 60.592 | 55.000 | 4.92 | 0.00 | 0.00 | 3.56 |
2432 | 2851 | 6.861055 | CCGCGTTATCCAAATGCTAAATTTAT | 59.139 | 34.615 | 4.92 | 0.00 | 0.00 | 1.40 |
2434 | 2853 | 7.501515 | GCGTTATCCAAATGCTAAATTTATGC | 58.498 | 34.615 | 0.00 | 5.67 | 0.00 | 3.14 |
2435 | 2854 | 7.359181 | GCGTTATCCAAATGCTAAATTTATGCC | 60.359 | 37.037 | 13.55 | 2.12 | 0.00 | 4.40 |
2437 | 2856 | 8.764287 | GTTATCCAAATGCTAAATTTATGCCAC | 58.236 | 33.333 | 13.55 | 0.00 | 0.00 | 5.01 |
2439 | 2858 | 4.815846 | CCAAATGCTAAATTTATGCCACCC | 59.184 | 41.667 | 13.55 | 0.00 | 0.00 | 4.61 |
2440 | 2859 | 4.687901 | AATGCTAAATTTATGCCACCCC | 57.312 | 40.909 | 13.55 | 0.00 | 0.00 | 4.95 |
2442 | 2861 | 3.295973 | TGCTAAATTTATGCCACCCCTC | 58.704 | 45.455 | 13.55 | 0.00 | 0.00 | 4.30 |
2444 | 2863 | 3.704061 | GCTAAATTTATGCCACCCCTCAA | 59.296 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2446 | 2865 | 3.756082 | AATTTATGCCACCCCTCAAGA | 57.244 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
2447 | 2866 | 3.756082 | ATTTATGCCACCCCTCAAGAA | 57.244 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
2448 | 2867 | 3.534357 | TTTATGCCACCCCTCAAGAAA | 57.466 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
2450 | 2869 | 2.397044 | ATGCCACCCCTCAAGAAAAA | 57.603 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2502 | 3909 | 1.239968 | CCCTGCTGGTTGTTGAGAGC | 61.240 | 60.000 | 9.00 | 0.00 | 0.00 | 4.09 |
2504 | 3911 | 2.180131 | CTGCTGGTTGTTGAGAGCGC | 62.180 | 60.000 | 0.00 | 0.00 | 33.97 | 5.92 |
2505 | 3912 | 2.970974 | GCTGGTTGTTGAGAGCGCC | 61.971 | 63.158 | 2.29 | 0.00 | 0.00 | 6.53 |
2507 | 3914 | 0.037326 | CTGGTTGTTGAGAGCGCCTA | 60.037 | 55.000 | 2.29 | 0.00 | 0.00 | 3.93 |
2509 | 3916 | 1.009829 | GGTTGTTGAGAGCGCCTATG | 58.990 | 55.000 | 2.29 | 0.00 | 0.00 | 2.23 |
2510 | 3917 | 0.375106 | GTTGTTGAGAGCGCCTATGC | 59.625 | 55.000 | 2.29 | 0.00 | 0.00 | 3.14 |
2572 | 3981 | 6.389830 | AAAAATGCCATGCTATATCGACAA | 57.610 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2573 | 3982 | 6.389830 | AAAATGCCATGCTATATCGACAAA | 57.610 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2574 | 3983 | 6.579666 | AAATGCCATGCTATATCGACAAAT | 57.420 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2575 | 3984 | 5.808042 | ATGCCATGCTATATCGACAAATC | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2576 | 3985 | 4.898320 | TGCCATGCTATATCGACAAATCT | 58.102 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2577 | 3986 | 5.308014 | TGCCATGCTATATCGACAAATCTT | 58.692 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
2578 | 3987 | 6.463360 | TGCCATGCTATATCGACAAATCTTA | 58.537 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2579 | 3988 | 6.934083 | TGCCATGCTATATCGACAAATCTTAA | 59.066 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2580 | 3989 | 7.607607 | TGCCATGCTATATCGACAAATCTTAAT | 59.392 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2581 | 3990 | 8.454106 | GCCATGCTATATCGACAAATCTTAATT | 58.546 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2582 | 3991 | 9.979270 | CCATGCTATATCGACAAATCTTAATTC | 57.021 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2633 | 4084 | 4.911610 | CCGTGCAACTTTGTTAATTCAGAG | 59.088 | 41.667 | 0.00 | 0.00 | 31.75 | 3.35 |
2651 | 4102 | 8.593945 | ATTCAGAGATAACTAATTTTTGGGCA | 57.406 | 30.769 | 0.00 | 0.00 | 0.00 | 5.36 |
2694 | 4146 | 7.816031 | GCATGATTATTATCAGGAATGGGTTTG | 59.184 | 37.037 | 10.31 | 0.00 | 43.48 | 2.93 |
2697 | 4149 | 8.281531 | TGATTATTATCAGGAATGGGTTTGTCT | 58.718 | 33.333 | 0.00 | 0.00 | 35.87 | 3.41 |
2723 | 4175 | 0.930310 | CCTCCATTGACGCACATACG | 59.070 | 55.000 | 0.00 | 0.00 | 39.50 | 3.06 |
2727 | 4179 | 0.721154 | CATTGACGCACATACGCACT | 59.279 | 50.000 | 0.00 | 0.00 | 36.19 | 4.40 |
2848 | 4300 | 2.030562 | CCCTCAACGCCGTTGACT | 59.969 | 61.111 | 27.27 | 0.00 | 45.88 | 3.41 |
2861 | 4313 | 1.335597 | CGTTGACTTGGTGTCTAGCGA | 60.336 | 52.381 | 0.00 | 0.00 | 45.54 | 4.93 |
2862 | 4314 | 2.671351 | CGTTGACTTGGTGTCTAGCGAT | 60.671 | 50.000 | 0.00 | 0.00 | 45.54 | 4.58 |
2892 | 4344 | 1.757118 | CCCGAGAGCTCCACTAAATCA | 59.243 | 52.381 | 10.93 | 0.00 | 0.00 | 2.57 |
2925 | 4377 | 1.752501 | CTATCGTGTTCGCAAGCCCG | 61.753 | 60.000 | 0.00 | 0.00 | 36.96 | 6.13 |
2960 | 4412 | 1.725164 | CTTCTTTAGGTCGGCGTTCAC | 59.275 | 52.381 | 6.85 | 0.00 | 0.00 | 3.18 |
3201 | 4653 | 1.302511 | GGTGGAACGTGATGTGGCT | 60.303 | 57.895 | 0.00 | 0.00 | 38.12 | 4.75 |
3234 | 4686 | 2.039974 | TGCCGATGCGCTCACAAAT | 61.040 | 52.632 | 9.73 | 0.00 | 41.78 | 2.32 |
3264 | 4716 | 3.953775 | CCGGCAGAGTGGTGGGTT | 61.954 | 66.667 | 0.00 | 0.00 | 0.00 | 4.11 |
3291 | 4743 | 2.174639 | ACACAAGTTCATGGTCAAGGGA | 59.825 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
3369 | 4822 | 1.770658 | CATGGAGAGGACATTAGGCCA | 59.229 | 52.381 | 5.01 | 0.00 | 0.00 | 5.36 |
3591 | 5045 | 1.137513 | GAAACCACTTCACCTCGACG | 58.862 | 55.000 | 0.00 | 0.00 | 33.86 | 5.12 |
3610 | 5064 | 2.420022 | ACGATTCCTTTGGCATTCTTCG | 59.580 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
3637 | 5091 | 3.559238 | AATTGTTGATCACGTCCTTGC | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
3650 | 5104 | 2.223377 | CGTCCTTGCTGTACTTGGTTTC | 59.777 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
3706 | 5160 | 3.228453 | TGAAGTTCCAGGAAGTACGTCT | 58.772 | 45.455 | 10.18 | 0.00 | 0.00 | 4.18 |
3707 | 5161 | 4.401022 | TGAAGTTCCAGGAAGTACGTCTA | 58.599 | 43.478 | 10.18 | 0.00 | 0.00 | 2.59 |
3728 | 5182 | 7.246311 | GTCTACTTGTCCATCATCAACATTTG | 58.754 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
3788 | 5242 | 6.844254 | TGCTAAACGTACACAAAAAGAGTTT | 58.156 | 32.000 | 0.00 | 0.00 | 35.07 | 2.66 |
3789 | 5243 | 6.743627 | TGCTAAACGTACACAAAAAGAGTTTG | 59.256 | 34.615 | 0.00 | 0.00 | 33.27 | 2.93 |
3822 | 5276 | 9.907229 | ATTAACTTTCCTAGTATCTTTCCCTTG | 57.093 | 33.333 | 0.00 | 0.00 | 35.54 | 3.61 |
3823 | 5277 | 7.569599 | AACTTTCCTAGTATCTTTCCCTTGA | 57.430 | 36.000 | 0.00 | 0.00 | 35.54 | 3.02 |
3824 | 5278 | 7.757242 | ACTTTCCTAGTATCTTTCCCTTGAT | 57.243 | 36.000 | 0.00 | 0.00 | 34.56 | 2.57 |
3825 | 5279 | 7.569240 | ACTTTCCTAGTATCTTTCCCTTGATG | 58.431 | 38.462 | 0.00 | 0.00 | 34.56 | 3.07 |
3826 | 5280 | 7.182930 | ACTTTCCTAGTATCTTTCCCTTGATGT | 59.817 | 37.037 | 0.00 | 0.00 | 34.56 | 3.06 |
3827 | 5281 | 6.485830 | TCCTAGTATCTTTCCCTTGATGTG | 57.514 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
3828 | 5282 | 6.202331 | TCCTAGTATCTTTCCCTTGATGTGA | 58.798 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3829 | 5283 | 6.846505 | TCCTAGTATCTTTCCCTTGATGTGAT | 59.153 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
3830 | 5284 | 7.348274 | TCCTAGTATCTTTCCCTTGATGTGATT | 59.652 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3831 | 5285 | 7.659390 | CCTAGTATCTTTCCCTTGATGTGATTC | 59.341 | 40.741 | 0.00 | 0.00 | 0.00 | 2.52 |
3832 | 5286 | 6.962182 | AGTATCTTTCCCTTGATGTGATTCA | 58.038 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3833 | 5287 | 7.580910 | AGTATCTTTCCCTTGATGTGATTCAT | 58.419 | 34.615 | 0.00 | 0.00 | 39.77 | 2.57 |
3834 | 5288 | 6.710597 | ATCTTTCCCTTGATGTGATTCATG | 57.289 | 37.500 | 0.00 | 0.00 | 36.83 | 3.07 |
3835 | 5289 | 4.951715 | TCTTTCCCTTGATGTGATTCATGG | 59.048 | 41.667 | 0.00 | 0.00 | 39.48 | 3.66 |
3836 | 5290 | 4.320546 | TTCCCTTGATGTGATTCATGGT | 57.679 | 40.909 | 0.00 | 0.00 | 38.60 | 3.55 |
3837 | 5291 | 3.623703 | TCCCTTGATGTGATTCATGGTG | 58.376 | 45.455 | 0.00 | 0.00 | 38.60 | 4.17 |
3838 | 5292 | 3.010472 | TCCCTTGATGTGATTCATGGTGT | 59.990 | 43.478 | 0.00 | 0.00 | 38.60 | 4.16 |
3839 | 5293 | 3.379372 | CCCTTGATGTGATTCATGGTGTC | 59.621 | 47.826 | 0.00 | 0.00 | 38.60 | 3.67 |
3840 | 5294 | 3.379372 | CCTTGATGTGATTCATGGTGTCC | 59.621 | 47.826 | 0.00 | 0.00 | 36.60 | 4.02 |
3841 | 5295 | 4.267536 | CTTGATGTGATTCATGGTGTCCT | 58.732 | 43.478 | 0.00 | 0.00 | 36.83 | 3.85 |
3842 | 5296 | 5.430886 | CTTGATGTGATTCATGGTGTCCTA | 58.569 | 41.667 | 0.00 | 0.00 | 36.83 | 2.94 |
3843 | 5297 | 4.769688 | TGATGTGATTCATGGTGTCCTAC | 58.230 | 43.478 | 0.00 | 0.00 | 36.83 | 3.18 |
3844 | 5298 | 4.471025 | TGATGTGATTCATGGTGTCCTACT | 59.529 | 41.667 | 0.00 | 0.00 | 36.83 | 2.57 |
3845 | 5299 | 4.206477 | TGTGATTCATGGTGTCCTACTG | 57.794 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
3846 | 5300 | 2.939103 | GTGATTCATGGTGTCCTACTGC | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3847 | 5301 | 2.840038 | TGATTCATGGTGTCCTACTGCT | 59.160 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
3848 | 5302 | 3.264193 | TGATTCATGGTGTCCTACTGCTT | 59.736 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
3849 | 5303 | 4.469586 | TGATTCATGGTGTCCTACTGCTTA | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
3850 | 5304 | 3.887621 | TCATGGTGTCCTACTGCTTAC | 57.112 | 47.619 | 0.00 | 0.00 | 0.00 | 2.34 |
3851 | 5305 | 2.165641 | TCATGGTGTCCTACTGCTTACG | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3852 | 5306 | 1.913778 | TGGTGTCCTACTGCTTACGA | 58.086 | 50.000 | 0.00 | 0.00 | 0.00 | 3.43 |
3853 | 5307 | 2.241160 | TGGTGTCCTACTGCTTACGAA | 58.759 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
3863 | 5317 | 4.002906 | ACTGCTTACGAAGTTTCATGGA | 57.997 | 40.909 | 0.00 | 0.00 | 37.78 | 3.41 |
3866 | 5320 | 3.745975 | TGCTTACGAAGTTTCATGGAGTG | 59.254 | 43.478 | 0.00 | 0.00 | 37.78 | 3.51 |
3919 | 5373 | 4.814771 | GCTACGGCTTGTTAATGTTCCTAT | 59.185 | 41.667 | 0.00 | 0.00 | 35.22 | 2.57 |
3920 | 5374 | 5.277345 | GCTACGGCTTGTTAATGTTCCTATG | 60.277 | 44.000 | 0.00 | 0.00 | 35.22 | 2.23 |
3925 | 5379 | 6.293407 | CGGCTTGTTAATGTTCCTATGGTATG | 60.293 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
3945 | 5399 | 7.868415 | TGGTATGTTTACACTTTTATGCAAACC | 59.132 | 33.333 | 0.00 | 0.00 | 35.71 | 3.27 |
3952 | 5406 | 4.592778 | ACACTTTTATGCAAACCCAAGGAT | 59.407 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
3992 | 5446 | 1.608109 | TGTGTGACACATGAACATGGC | 59.392 | 47.619 | 15.39 | 8.17 | 39.62 | 4.40 |
3993 | 5447 | 1.608109 | GTGTGACACATGAACATGGCA | 59.392 | 47.619 | 12.26 | 10.23 | 42.91 | 4.92 |
3994 | 5448 | 2.034432 | GTGTGACACATGAACATGGCAA | 59.966 | 45.455 | 12.26 | 0.16 | 42.91 | 4.52 |
3997 | 5451 | 3.490526 | GTGACACATGAACATGGCAAAAC | 59.509 | 43.478 | 17.25 | 6.85 | 42.91 | 2.43 |
4009 | 5463 | 0.541764 | GGCAAAACCACTCCCCATCA | 60.542 | 55.000 | 0.00 | 0.00 | 38.86 | 3.07 |
4012 | 5466 | 2.315176 | CAAAACCACTCCCCATCAACA | 58.685 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
4023 | 5478 | 5.015178 | ACTCCCCATCAACAAATCCTTTAGA | 59.985 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4033 | 5488 | 8.786898 | TCAACAAATCCTTTAGAGTTCTTCATG | 58.213 | 33.333 | 0.00 | 0.00 | 28.05 | 3.07 |
4036 | 5491 | 3.861840 | TCCTTTAGAGTTCTTCATGCCG | 58.138 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
4048 | 5503 | 5.490139 | TCTTCATGCCGAATTTCTTCATC | 57.510 | 39.130 | 0.00 | 0.00 | 31.69 | 2.92 |
4050 | 5505 | 5.591472 | TCTTCATGCCGAATTTCTTCATCAT | 59.409 | 36.000 | 0.00 | 0.00 | 31.69 | 2.45 |
4055 | 5510 | 9.889128 | TCATGCCGAATTTCTTCATCATATATA | 57.111 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
4117 | 5572 | 9.974750 | GTTATCTTTATTTGAAGTTCGAGGAAG | 57.025 | 33.333 | 0.00 | 2.87 | 0.00 | 3.46 |
4123 | 5578 | 6.787085 | ATTTGAAGTTCGAGGAAGTACTTG | 57.213 | 37.500 | 14.14 | 0.00 | 33.01 | 3.16 |
4124 | 5579 | 5.524971 | TTGAAGTTCGAGGAAGTACTTGA | 57.475 | 39.130 | 14.14 | 0.59 | 33.01 | 3.02 |
4130 | 5585 | 2.095364 | TCGAGGAAGTACTTGAACTCGC | 60.095 | 50.000 | 30.07 | 12.17 | 45.14 | 5.03 |
4237 | 5692 | 1.388547 | TGGCACACCAAGAGTTCAAC | 58.611 | 50.000 | 0.00 | 0.00 | 45.37 | 3.18 |
4238 | 5693 | 1.340502 | TGGCACACCAAGAGTTCAACA | 60.341 | 47.619 | 0.00 | 0.00 | 45.37 | 3.33 |
4243 | 5698 | 5.451242 | GGCACACCAAGAGTTCAACATTAAA | 60.451 | 40.000 | 0.00 | 0.00 | 35.26 | 1.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
111 | 114 | 9.396022 | TGAAGTCAATCTCCATAGGAAAAATAC | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
163 | 185 | 3.277142 | AAAATTACTCGCCCCGATCTT | 57.723 | 42.857 | 0.00 | 0.00 | 34.61 | 2.40 |
164 | 186 | 3.277142 | AAAAATTACTCGCCCCGATCT | 57.723 | 42.857 | 0.00 | 0.00 | 34.61 | 2.75 |
197 | 219 | 8.902806 | AGTGTTCAGAAAATTCATGTAAACTGA | 58.097 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
198 | 220 | 9.520204 | AAGTGTTCAGAAAATTCATGTAAACTG | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
252 | 274 | 9.912634 | CAGATCACAGGTAAAAATTACACAAAT | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
255 | 277 | 8.349245 | CAACAGATCACAGGTAAAAATTACACA | 58.651 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
256 | 278 | 7.326063 | GCAACAGATCACAGGTAAAAATTACAC | 59.674 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
257 | 279 | 7.367285 | GCAACAGATCACAGGTAAAAATTACA | 58.633 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
259 | 281 | 6.205853 | ACGCAACAGATCACAGGTAAAAATTA | 59.794 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
271 | 293 | 5.779806 | ACAACTATAACGCAACAGATCAC | 57.220 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
277 | 299 | 6.263516 | AGAGAGTACAACTATAACGCAACA | 57.736 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
356 | 403 | 8.478877 | GGTAATTAAAGAGAAGAGAGATGGTGA | 58.521 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
359 | 406 | 8.028652 | AGGGTAATTAAAGAGAAGAGAGATGG | 57.971 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
384 | 431 | 0.911769 | CACTCAGCTCATTGGGGGTA | 59.088 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
389 | 436 | 1.531423 | ACTTGCACTCAGCTCATTGG | 58.469 | 50.000 | 0.00 | 0.00 | 45.94 | 3.16 |
390 | 437 | 3.593096 | TCTACTTGCACTCAGCTCATTG | 58.407 | 45.455 | 0.00 | 0.00 | 45.94 | 2.82 |
406 | 453 | 4.221703 | CACATGGTCTCCTCACTTTCTACT | 59.778 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
432 | 479 | 7.013655 | ACACCATAATCAAGACCAATAGCATTC | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
437 | 484 | 7.716560 | TCATCACACCATAATCAAGACCAATAG | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
438 | 485 | 7.572814 | TCATCACACCATAATCAAGACCAATA | 58.427 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
454 | 507 | 5.776744 | AGAATGCTTCTTTTTCATCACACC | 58.223 | 37.500 | 0.00 | 0.00 | 36.36 | 4.16 |
570 | 624 | 8.141298 | TCCCTCACATACAACATACTTCTTTA | 57.859 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
575 | 629 | 8.548877 | AGTAAATCCCTCACATACAACATACTT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
605 | 659 | 1.478105 | GCCCAAATAGCAACAAGGGAG | 59.522 | 52.381 | 7.63 | 0.00 | 38.60 | 4.30 |
612 | 666 | 1.134729 | CCCATGTGCCCAAATAGCAAC | 60.135 | 52.381 | 0.00 | 0.00 | 43.02 | 4.17 |
619 | 673 | 0.251564 | CACTACCCCATGTGCCCAAA | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
622 | 676 | 2.275418 | CCACTACCCCATGTGCCC | 59.725 | 66.667 | 0.00 | 0.00 | 33.26 | 5.36 |
668 | 722 | 2.296073 | AGCCCCTAGGAGAGATTACG | 57.704 | 55.000 | 11.48 | 0.00 | 33.47 | 3.18 |
669 | 723 | 4.081365 | GCAATAGCCCCTAGGAGAGATTAC | 60.081 | 50.000 | 11.48 | 0.00 | 33.47 | 1.89 |
670 | 724 | 4.097418 | GCAATAGCCCCTAGGAGAGATTA | 58.903 | 47.826 | 11.48 | 0.00 | 33.47 | 1.75 |
701 | 773 | 4.576330 | ATCAGTTAAGTTGGGGAGGAAG | 57.424 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
714 | 786 | 2.039216 | TCACCGGGCTCAAATCAGTTAA | 59.961 | 45.455 | 6.32 | 0.00 | 0.00 | 2.01 |
824 | 897 | 7.711339 | GCTCCAGTATTATATTATTTCTCCCCG | 59.289 | 40.741 | 0.00 | 0.00 | 0.00 | 5.73 |
1056 | 1152 | 0.600255 | CACGCGGTTTCTCTTGGTCT | 60.600 | 55.000 | 12.47 | 0.00 | 0.00 | 3.85 |
1323 | 1422 | 1.624312 | TGGTAGTTATTGCCGTGGTGA | 59.376 | 47.619 | 0.00 | 0.00 | 33.59 | 4.02 |
1335 | 1434 | 3.006110 | CGAACTTGGTGACCTGGTAGTTA | 59.994 | 47.826 | 10.98 | 0.00 | 0.00 | 2.24 |
1368 | 1467 | 4.373116 | GGGAGTGGCAGCGACGAA | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1644 | 1770 | 2.535012 | TGCTTGATGTGTACACGGAA | 57.465 | 45.000 | 20.61 | 11.74 | 0.00 | 4.30 |
1656 | 1782 | 1.002430 | TCGGAGCTCTTGTTGCTTGAT | 59.998 | 47.619 | 14.64 | 0.00 | 41.30 | 2.57 |
1756 | 1883 | 1.935873 | CGGTTAGATCGACTGGACGTA | 59.064 | 52.381 | 0.00 | 0.00 | 34.70 | 3.57 |
1757 | 1884 | 0.731417 | CGGTTAGATCGACTGGACGT | 59.269 | 55.000 | 0.00 | 0.00 | 34.70 | 4.34 |
1758 | 1885 | 1.012086 | TCGGTTAGATCGACTGGACG | 58.988 | 55.000 | 10.10 | 0.00 | 0.00 | 4.79 |
1822 | 2018 | 2.672961 | TGCTTCGGTCTAGTCAATGG | 57.327 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1847 | 2066 | 3.462021 | GCCTTGCCTCAGTATAGTCAAG | 58.538 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1924 | 2148 | 8.517878 | TCCTGAAAGAAAATCTCTAGCATTTTG | 58.482 | 33.333 | 13.86 | 3.04 | 34.30 | 2.44 |
1958 | 2185 | 9.807921 | TTTGAACCTTGATAAAAATCTCTAGGT | 57.192 | 29.630 | 0.75 | 0.75 | 45.52 | 3.08 |
1962 | 2189 | 9.750125 | GTGTTTTGAACCTTGATAAAAATCTCT | 57.250 | 29.630 | 0.00 | 0.00 | 0.00 | 3.10 |
1993 | 2220 | 4.100653 | TCTGGCACATTTTGACATTTTCCA | 59.899 | 37.500 | 0.00 | 0.00 | 44.75 | 3.53 |
2028 | 2256 | 0.817634 | AGAGGACGAGGAGATCAGCG | 60.818 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2030 | 2258 | 2.158827 | TCTCAGAGGACGAGGAGATCAG | 60.159 | 54.545 | 0.00 | 0.00 | 31.82 | 2.90 |
2033 | 2261 | 3.117701 | TGATTCTCAGAGGACGAGGAGAT | 60.118 | 47.826 | 0.00 | 0.00 | 36.39 | 2.75 |
2034 | 2262 | 2.239907 | TGATTCTCAGAGGACGAGGAGA | 59.760 | 50.000 | 0.00 | 0.00 | 34.77 | 3.71 |
2036 | 2264 | 2.808906 | TGATTCTCAGAGGACGAGGA | 57.191 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2037 | 2265 | 4.582656 | ACTAATGATTCTCAGAGGACGAGG | 59.417 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
2039 | 2267 | 6.378564 | AGAAACTAATGATTCTCAGAGGACGA | 59.621 | 38.462 | 0.00 | 0.00 | 30.94 | 4.20 |
2040 | 2268 | 6.568869 | AGAAACTAATGATTCTCAGAGGACG | 58.431 | 40.000 | 0.00 | 0.00 | 30.94 | 4.79 |
2041 | 2269 | 7.821846 | ACAAGAAACTAATGATTCTCAGAGGAC | 59.178 | 37.037 | 0.00 | 0.00 | 34.81 | 3.85 |
2042 | 2270 | 7.911651 | ACAAGAAACTAATGATTCTCAGAGGA | 58.088 | 34.615 | 0.00 | 0.00 | 34.81 | 3.71 |
2043 | 2271 | 9.092876 | GTACAAGAAACTAATGATTCTCAGAGG | 57.907 | 37.037 | 0.00 | 0.00 | 34.81 | 3.69 |
2045 | 2273 | 9.645059 | CAGTACAAGAAACTAATGATTCTCAGA | 57.355 | 33.333 | 0.00 | 0.00 | 34.81 | 3.27 |
2047 | 2275 | 9.424319 | GACAGTACAAGAAACTAATGATTCTCA | 57.576 | 33.333 | 0.00 | 0.00 | 34.81 | 3.27 |
2048 | 2276 | 8.587950 | CGACAGTACAAGAAACTAATGATTCTC | 58.412 | 37.037 | 0.00 | 0.00 | 34.81 | 2.87 |
2050 | 2278 | 8.462143 | TCGACAGTACAAGAAACTAATGATTC | 57.538 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2051 | 2279 | 8.709646 | GTTCGACAGTACAAGAAACTAATGATT | 58.290 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2054 | 2282 | 7.639162 | AGTTCGACAGTACAAGAAACTAATG | 57.361 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2055 | 2283 | 8.658499 | AAAGTTCGACAGTACAAGAAACTAAT | 57.342 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
2057 | 2285 | 7.546667 | ACAAAAGTTCGACAGTACAAGAAACTA | 59.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2058 | 2286 | 6.370718 | ACAAAAGTTCGACAGTACAAGAAACT | 59.629 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2060 | 2288 | 6.730960 | ACAAAAGTTCGACAGTACAAGAAA | 57.269 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2061 | 2289 | 6.183360 | GGAACAAAAGTTCGACAGTACAAGAA | 60.183 | 38.462 | 0.00 | 0.00 | 34.37 | 2.52 |
2062 | 2290 | 5.292589 | GGAACAAAAGTTCGACAGTACAAGA | 59.707 | 40.000 | 0.00 | 0.00 | 34.37 | 3.02 |
2063 | 2291 | 5.293569 | AGGAACAAAAGTTCGACAGTACAAG | 59.706 | 40.000 | 0.00 | 0.00 | 34.37 | 3.16 |
2064 | 2292 | 5.180271 | AGGAACAAAAGTTCGACAGTACAA | 58.820 | 37.500 | 0.00 | 0.00 | 34.37 | 2.41 |
2065 | 2293 | 4.761975 | AGGAACAAAAGTTCGACAGTACA | 58.238 | 39.130 | 0.00 | 0.00 | 34.37 | 2.90 |
2066 | 2294 | 5.729974 | AAGGAACAAAAGTTCGACAGTAC | 57.270 | 39.130 | 2.67 | 0.00 | 34.37 | 2.73 |
2067 | 2295 | 5.875910 | TCAAAGGAACAAAAGTTCGACAGTA | 59.124 | 36.000 | 2.67 | 0.00 | 34.37 | 2.74 |
2068 | 2296 | 4.698304 | TCAAAGGAACAAAAGTTCGACAGT | 59.302 | 37.500 | 2.67 | 0.00 | 34.37 | 3.55 |
2069 | 2297 | 5.163754 | ACTCAAAGGAACAAAAGTTCGACAG | 60.164 | 40.000 | 2.67 | 0.00 | 34.37 | 3.51 |
2070 | 2298 | 4.698304 | ACTCAAAGGAACAAAAGTTCGACA | 59.302 | 37.500 | 2.67 | 0.00 | 34.37 | 4.35 |
2071 | 2299 | 5.231265 | ACTCAAAGGAACAAAAGTTCGAC | 57.769 | 39.130 | 2.67 | 0.00 | 34.37 | 4.20 |
2072 | 2300 | 5.163693 | GGAACTCAAAGGAACAAAAGTTCGA | 60.164 | 40.000 | 0.00 | 0.00 | 42.09 | 3.71 |
2073 | 2301 | 5.034797 | GGAACTCAAAGGAACAAAAGTTCG | 58.965 | 41.667 | 0.00 | 0.00 | 42.09 | 3.95 |
2074 | 2302 | 5.961272 | TGGAACTCAAAGGAACAAAAGTTC | 58.039 | 37.500 | 4.83 | 4.83 | 41.02 | 3.01 |
2075 | 2303 | 5.714806 | TCTGGAACTCAAAGGAACAAAAGTT | 59.285 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2076 | 2304 | 5.261216 | TCTGGAACTCAAAGGAACAAAAGT | 58.739 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
2077 | 2305 | 5.835113 | TCTGGAACTCAAAGGAACAAAAG | 57.165 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
2078 | 2306 | 6.597832 | TTTCTGGAACTCAAAGGAACAAAA | 57.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2079 | 2307 | 6.790232 | ATTTCTGGAACTCAAAGGAACAAA | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2080 | 2308 | 6.790232 | AATTTCTGGAACTCAAAGGAACAA | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2081 | 2309 | 6.790232 | AAATTTCTGGAACTCAAAGGAACA | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2082 | 2310 | 9.764363 | AATAAAATTTCTGGAACTCAAAGGAAC | 57.236 | 29.630 | 0.00 | 0.00 | 0.00 | 3.62 |
2107 | 2335 | 8.680001 | GGTTTACTTAGTCCTCAAAAGTGAAAA | 58.320 | 33.333 | 0.00 | 0.00 | 32.62 | 2.29 |
2108 | 2336 | 7.830201 | TGGTTTACTTAGTCCTCAAAAGTGAAA | 59.170 | 33.333 | 0.00 | 0.00 | 32.62 | 2.69 |
2109 | 2337 | 7.340256 | TGGTTTACTTAGTCCTCAAAAGTGAA | 58.660 | 34.615 | 0.00 | 0.00 | 35.23 | 3.18 |
2110 | 2338 | 6.891388 | TGGTTTACTTAGTCCTCAAAAGTGA | 58.109 | 36.000 | 0.00 | 0.00 | 35.23 | 3.41 |
2111 | 2339 | 7.562454 | TTGGTTTACTTAGTCCTCAAAAGTG | 57.438 | 36.000 | 0.00 | 0.00 | 35.23 | 3.16 |
2112 | 2340 | 8.464404 | GTTTTGGTTTACTTAGTCCTCAAAAGT | 58.536 | 33.333 | 12.39 | 0.00 | 34.79 | 2.66 |
2113 | 2341 | 8.463607 | TGTTTTGGTTTACTTAGTCCTCAAAAG | 58.536 | 33.333 | 12.39 | 0.00 | 34.79 | 2.27 |
2114 | 2342 | 8.350852 | TGTTTTGGTTTACTTAGTCCTCAAAA | 57.649 | 30.769 | 9.77 | 9.77 | 32.67 | 2.44 |
2115 | 2343 | 7.941431 | TGTTTTGGTTTACTTAGTCCTCAAA | 57.059 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2116 | 2344 | 9.280174 | CTATGTTTTGGTTTACTTAGTCCTCAA | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2117 | 2345 | 8.434392 | ACTATGTTTTGGTTTACTTAGTCCTCA | 58.566 | 33.333 | 0.00 | 0.00 | 32.81 | 3.86 |
2118 | 2346 | 8.843885 | ACTATGTTTTGGTTTACTTAGTCCTC | 57.156 | 34.615 | 0.00 | 0.00 | 32.81 | 3.71 |
2119 | 2347 | 9.716531 | GTACTATGTTTTGGTTTACTTAGTCCT | 57.283 | 33.333 | 0.00 | 0.00 | 36.88 | 3.85 |
2120 | 2348 | 8.939929 | GGTACTATGTTTTGGTTTACTTAGTCC | 58.060 | 37.037 | 0.00 | 0.00 | 36.88 | 3.85 |
2121 | 2349 | 8.650714 | CGGTACTATGTTTTGGTTTACTTAGTC | 58.349 | 37.037 | 0.00 | 0.00 | 36.88 | 2.59 |
2122 | 2350 | 7.603784 | CCGGTACTATGTTTTGGTTTACTTAGT | 59.396 | 37.037 | 0.00 | 0.00 | 38.24 | 2.24 |
2123 | 2351 | 7.818930 | TCCGGTACTATGTTTTGGTTTACTTAG | 59.181 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
2124 | 2352 | 7.675062 | TCCGGTACTATGTTTTGGTTTACTTA | 58.325 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2125 | 2353 | 6.532826 | TCCGGTACTATGTTTTGGTTTACTT | 58.467 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2126 | 2354 | 6.112927 | TCCGGTACTATGTTTTGGTTTACT | 57.887 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2127 | 2355 | 6.204495 | TGTTCCGGTACTATGTTTTGGTTTAC | 59.796 | 38.462 | 12.78 | 0.00 | 0.00 | 2.01 |
2128 | 2356 | 6.294473 | TGTTCCGGTACTATGTTTTGGTTTA | 58.706 | 36.000 | 12.78 | 0.00 | 0.00 | 2.01 |
2129 | 2357 | 5.131784 | TGTTCCGGTACTATGTTTTGGTTT | 58.868 | 37.500 | 12.78 | 0.00 | 0.00 | 3.27 |
2130 | 2358 | 4.716794 | TGTTCCGGTACTATGTTTTGGTT | 58.283 | 39.130 | 12.78 | 0.00 | 0.00 | 3.67 |
2131 | 2359 | 4.354893 | TGTTCCGGTACTATGTTTTGGT | 57.645 | 40.909 | 12.78 | 0.00 | 0.00 | 3.67 |
2132 | 2360 | 5.454520 | GTTTGTTCCGGTACTATGTTTTGG | 58.545 | 41.667 | 12.78 | 0.00 | 0.00 | 3.28 |
2133 | 2361 | 5.141568 | CGTTTGTTCCGGTACTATGTTTTG | 58.858 | 41.667 | 12.78 | 0.00 | 0.00 | 2.44 |
2134 | 2362 | 4.319694 | GCGTTTGTTCCGGTACTATGTTTT | 60.320 | 41.667 | 12.78 | 0.00 | 0.00 | 2.43 |
2135 | 2363 | 3.187022 | GCGTTTGTTCCGGTACTATGTTT | 59.813 | 43.478 | 12.78 | 0.00 | 0.00 | 2.83 |
2136 | 2364 | 2.738314 | GCGTTTGTTCCGGTACTATGTT | 59.262 | 45.455 | 12.78 | 0.00 | 0.00 | 2.71 |
2137 | 2365 | 2.288948 | TGCGTTTGTTCCGGTACTATGT | 60.289 | 45.455 | 12.78 | 0.00 | 0.00 | 2.29 |
2138 | 2366 | 2.339418 | TGCGTTTGTTCCGGTACTATG | 58.661 | 47.619 | 12.78 | 7.16 | 0.00 | 2.23 |
2139 | 2367 | 2.747396 | TGCGTTTGTTCCGGTACTAT | 57.253 | 45.000 | 12.78 | 0.00 | 0.00 | 2.12 |
2140 | 2368 | 2.522836 | TTGCGTTTGTTCCGGTACTA | 57.477 | 45.000 | 12.78 | 1.64 | 0.00 | 1.82 |
2141 | 2369 | 1.666054 | TTTGCGTTTGTTCCGGTACT | 58.334 | 45.000 | 12.78 | 0.00 | 0.00 | 2.73 |
2142 | 2370 | 2.471862 | TTTTGCGTTTGTTCCGGTAC | 57.528 | 45.000 | 3.92 | 3.92 | 0.00 | 3.34 |
2143 | 2371 | 2.422832 | AGTTTTTGCGTTTGTTCCGGTA | 59.577 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
2144 | 2372 | 1.202817 | AGTTTTTGCGTTTGTTCCGGT | 59.797 | 42.857 | 0.00 | 0.00 | 0.00 | 5.28 |
2145 | 2373 | 1.915952 | AGTTTTTGCGTTTGTTCCGG | 58.084 | 45.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2146 | 2374 | 2.028643 | CCAAGTTTTTGCGTTTGTTCCG | 59.971 | 45.455 | 0.00 | 0.00 | 32.79 | 4.30 |
2147 | 2375 | 2.997303 | ACCAAGTTTTTGCGTTTGTTCC | 59.003 | 40.909 | 0.00 | 0.00 | 32.79 | 3.62 |
2148 | 2376 | 4.434989 | GGAACCAAGTTTTTGCGTTTGTTC | 60.435 | 41.667 | 0.00 | 0.00 | 33.46 | 3.18 |
2149 | 2377 | 3.433957 | GGAACCAAGTTTTTGCGTTTGTT | 59.566 | 39.130 | 0.00 | 0.00 | 31.91 | 2.83 |
2150 | 2378 | 2.997303 | GGAACCAAGTTTTTGCGTTTGT | 59.003 | 40.909 | 0.00 | 0.00 | 31.91 | 2.83 |
2151 | 2379 | 2.996621 | TGGAACCAAGTTTTTGCGTTTG | 59.003 | 40.909 | 0.00 | 0.00 | 31.91 | 2.93 |
2152 | 2380 | 2.997303 | GTGGAACCAAGTTTTTGCGTTT | 59.003 | 40.909 | 0.00 | 0.00 | 31.91 | 3.60 |
2153 | 2381 | 2.612604 | GTGGAACCAAGTTTTTGCGTT | 58.387 | 42.857 | 0.00 | 0.00 | 33.37 | 4.84 |
2154 | 2382 | 1.468395 | CGTGGAACCAAGTTTTTGCGT | 60.468 | 47.619 | 0.00 | 0.00 | 32.79 | 5.24 |
2155 | 2383 | 1.196200 | CGTGGAACCAAGTTTTTGCG | 58.804 | 50.000 | 0.00 | 0.00 | 32.79 | 4.85 |
2156 | 2384 | 2.159296 | ACTCGTGGAACCAAGTTTTTGC | 60.159 | 45.455 | 6.66 | 0.00 | 32.79 | 3.68 |
2202 | 2430 | 9.994432 | GTCAATAACTCATTATTTCCTGTCTTG | 57.006 | 33.333 | 0.00 | 0.00 | 38.67 | 3.02 |
2204 | 2432 | 7.775561 | GGGTCAATAACTCATTATTTCCTGTCT | 59.224 | 37.037 | 0.00 | 0.00 | 38.67 | 3.41 |
2209 | 2437 | 5.298276 | TGCGGGTCAATAACTCATTATTTCC | 59.702 | 40.000 | 0.00 | 0.00 | 38.67 | 3.13 |
2210 | 2438 | 6.371809 | TGCGGGTCAATAACTCATTATTTC | 57.628 | 37.500 | 0.00 | 0.00 | 38.67 | 2.17 |
2214 | 2502 | 6.576662 | TTTTTGCGGGTCAATAACTCATTA | 57.423 | 33.333 | 0.00 | 0.00 | 34.12 | 1.90 |
2242 | 2530 | 9.601217 | TTGAGCCTCTAAATAAGTCACTATTTC | 57.399 | 33.333 | 0.00 | 0.00 | 34.21 | 2.17 |
2408 | 2815 | 7.617122 | GCATAAATTTAGCATTTGGATAACGCG | 60.617 | 37.037 | 3.53 | 3.53 | 0.00 | 6.01 |
2423 | 2842 | 5.200483 | TCTTGAGGGGTGGCATAAATTTAG | 58.800 | 41.667 | 3.94 | 0.00 | 0.00 | 1.85 |
2432 | 2851 | 3.935371 | TTTTTCTTGAGGGGTGGCA | 57.065 | 47.368 | 0.00 | 0.00 | 0.00 | 4.92 |
2448 | 2867 | 9.482627 | TCGTTGAGGCATAAATTTAACAATTTT | 57.517 | 25.926 | 1.21 | 0.00 | 39.19 | 1.82 |
2450 | 2869 | 9.482627 | TTTCGTTGAGGCATAAATTTAACAATT | 57.517 | 25.926 | 1.21 | 0.00 | 33.72 | 2.32 |
2555 | 3964 | 5.869753 | AAGATTTGTCGATATAGCATGGC | 57.130 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
2577 | 3986 | 9.743057 | CACAACCACTCAACTTATTTTGAATTA | 57.257 | 29.630 | 0.00 | 0.00 | 35.07 | 1.40 |
2578 | 3987 | 8.257306 | ACACAACCACTCAACTTATTTTGAATT | 58.743 | 29.630 | 0.00 | 0.00 | 35.07 | 2.17 |
2579 | 3988 | 7.781056 | ACACAACCACTCAACTTATTTTGAAT | 58.219 | 30.769 | 0.00 | 0.00 | 35.07 | 2.57 |
2580 | 3989 | 7.164230 | ACACAACCACTCAACTTATTTTGAA | 57.836 | 32.000 | 0.00 | 0.00 | 35.07 | 2.69 |
2581 | 3990 | 6.767524 | ACACAACCACTCAACTTATTTTGA | 57.232 | 33.333 | 0.00 | 0.00 | 34.30 | 2.69 |
2582 | 3991 | 7.703328 | AGTACACAACCACTCAACTTATTTTG | 58.297 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
2583 | 3992 | 7.875327 | AGTACACAACCACTCAACTTATTTT | 57.125 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2584 | 3993 | 7.875327 | AAGTACACAACCACTCAACTTATTT | 57.125 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2585 | 3994 | 7.443272 | GGTAAGTACACAACCACTCAACTTATT | 59.557 | 37.037 | 0.00 | 0.00 | 32.43 | 1.40 |
2590 | 3999 | 3.492011 | CGGTAAGTACACAACCACTCAAC | 59.508 | 47.826 | 10.70 | 0.00 | 32.55 | 3.18 |
2597 | 4006 | 1.868469 | TGCACGGTAAGTACACAACC | 58.132 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2633 | 4084 | 8.288689 | TCTAGGTTGCCCAAAAATTAGTTATC | 57.711 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
2651 | 4102 | 5.791336 | TCATGCGTGATATTCTCTAGGTT | 57.209 | 39.130 | 3.97 | 0.00 | 0.00 | 3.50 |
2668 | 4119 | 7.472334 | AACCCATTCCTGATAATAATCATGC | 57.528 | 36.000 | 0.00 | 0.00 | 41.29 | 4.06 |
2694 | 4146 | 2.347731 | GTCAATGGAGGAAACCGAGAC | 58.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2697 | 4149 | 0.672401 | GCGTCAATGGAGGAAACCGA | 60.672 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2723 | 4175 | 0.109412 | GAGAACCTGCATGCAAGTGC | 60.109 | 55.000 | 22.19 | 20.25 | 45.25 | 4.40 |
2727 | 4179 | 1.202915 | TCCTTGAGAACCTGCATGCAA | 60.203 | 47.619 | 22.88 | 1.16 | 0.00 | 4.08 |
2848 | 4300 | 2.036604 | TGTTGACATCGCTAGACACCAA | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
2861 | 4313 | 1.072331 | AGCTCTCGGGTTTGTTGACAT | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
2862 | 4314 | 0.468226 | AGCTCTCGGGTTTGTTGACA | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2892 | 4344 | 2.111384 | ACGATAGCAGTCACAGGGAAT | 58.889 | 47.619 | 0.00 | 0.00 | 42.67 | 3.01 |
2960 | 4412 | 1.211457 | CCTTCAGGTCTGGGAATGAGG | 59.789 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
3006 | 4458 | 3.389866 | AGGTGGGTACATAGGCACAATA | 58.610 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
3106 | 4558 | 2.230025 | ACTCGAGATTGTGGAGTGTCAG | 59.770 | 50.000 | 21.68 | 0.00 | 42.28 | 3.51 |
3201 | 4653 | 1.388065 | CGGCACCCTTGTTCACCAAA | 61.388 | 55.000 | 0.00 | 0.00 | 31.20 | 3.28 |
3264 | 4716 | 5.042463 | TGACCATGAACTTGTGTTTAGGA | 57.958 | 39.130 | 0.00 | 0.00 | 36.39 | 2.94 |
3291 | 4743 | 3.600388 | GAGTGTCCATCGTCCATCTTTT | 58.400 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
3369 | 4822 | 6.108687 | AGTACAATGTCGTGAATCACATCAT | 58.891 | 36.000 | 14.24 | 13.05 | 31.79 | 2.45 |
3505 | 4959 | 6.729690 | TTGAGGGAAAGTTGTTTCATCATT | 57.270 | 33.333 | 0.66 | 0.00 | 43.52 | 2.57 |
3591 | 5045 | 3.762779 | CACGAAGAATGCCAAAGGAATC | 58.237 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3610 | 5064 | 3.380142 | ACGTGATCAACAATTTTGGCAC | 58.620 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
3637 | 5091 | 5.641209 | CCTTCATCTCTGAAACCAAGTACAG | 59.359 | 44.000 | 0.00 | 0.00 | 40.78 | 2.74 |
3706 | 5160 | 7.757941 | TTCAAATGTTGATGATGGACAAGTA | 57.242 | 32.000 | 0.00 | 0.00 | 39.84 | 2.24 |
3707 | 5161 | 6.653526 | TTCAAATGTTGATGATGGACAAGT | 57.346 | 33.333 | 0.00 | 0.00 | 39.84 | 3.16 |
3728 | 5182 | 9.541143 | TTGGTAAATTCATGGAAAGAAAGTTTC | 57.459 | 29.630 | 7.57 | 7.57 | 0.00 | 2.78 |
3811 | 5265 | 5.597182 | CCATGAATCACATCAAGGGAAAGAT | 59.403 | 40.000 | 0.00 | 0.00 | 35.14 | 2.40 |
3812 | 5266 | 4.951715 | CCATGAATCACATCAAGGGAAAGA | 59.048 | 41.667 | 0.00 | 0.00 | 35.14 | 2.52 |
3813 | 5267 | 4.708421 | ACCATGAATCACATCAAGGGAAAG | 59.292 | 41.667 | 0.00 | 0.00 | 41.39 | 2.62 |
3814 | 5268 | 4.463539 | CACCATGAATCACATCAAGGGAAA | 59.536 | 41.667 | 0.00 | 0.00 | 41.39 | 3.13 |
3815 | 5269 | 4.018490 | CACCATGAATCACATCAAGGGAA | 58.982 | 43.478 | 0.00 | 0.00 | 41.39 | 3.97 |
3816 | 5270 | 3.010472 | ACACCATGAATCACATCAAGGGA | 59.990 | 43.478 | 0.00 | 0.00 | 41.39 | 4.20 |
3817 | 5271 | 3.359033 | ACACCATGAATCACATCAAGGG | 58.641 | 45.455 | 0.00 | 1.30 | 41.39 | 3.95 |
3818 | 5272 | 3.379372 | GGACACCATGAATCACATCAAGG | 59.621 | 47.826 | 0.00 | 0.00 | 42.48 | 3.61 |
3819 | 5273 | 4.267536 | AGGACACCATGAATCACATCAAG | 58.732 | 43.478 | 0.00 | 0.00 | 37.07 | 3.02 |
3820 | 5274 | 4.305539 | AGGACACCATGAATCACATCAA | 57.694 | 40.909 | 0.00 | 0.00 | 37.07 | 2.57 |
3821 | 5275 | 4.471025 | AGTAGGACACCATGAATCACATCA | 59.529 | 41.667 | 0.00 | 0.00 | 37.07 | 3.07 |
3822 | 5276 | 4.813161 | CAGTAGGACACCATGAATCACATC | 59.187 | 45.833 | 0.00 | 0.00 | 37.07 | 3.06 |
3823 | 5277 | 4.774124 | CAGTAGGACACCATGAATCACAT | 58.226 | 43.478 | 0.00 | 0.00 | 40.17 | 3.21 |
3824 | 5278 | 3.619733 | GCAGTAGGACACCATGAATCACA | 60.620 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
3825 | 5279 | 2.939103 | GCAGTAGGACACCATGAATCAC | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3826 | 5280 | 2.840038 | AGCAGTAGGACACCATGAATCA | 59.160 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3827 | 5281 | 3.550437 | AGCAGTAGGACACCATGAATC | 57.450 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
3828 | 5282 | 4.680708 | CGTAAGCAGTAGGACACCATGAAT | 60.681 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
3829 | 5283 | 3.368013 | CGTAAGCAGTAGGACACCATGAA | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
3830 | 5284 | 2.165641 | CGTAAGCAGTAGGACACCATGA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3831 | 5285 | 2.165641 | TCGTAAGCAGTAGGACACCATG | 59.834 | 50.000 | 0.00 | 0.00 | 37.18 | 3.66 |
3832 | 5286 | 2.453521 | TCGTAAGCAGTAGGACACCAT | 58.546 | 47.619 | 0.00 | 0.00 | 37.18 | 3.55 |
3833 | 5287 | 1.913778 | TCGTAAGCAGTAGGACACCA | 58.086 | 50.000 | 0.00 | 0.00 | 37.18 | 4.17 |
3834 | 5288 | 2.230750 | ACTTCGTAAGCAGTAGGACACC | 59.769 | 50.000 | 0.00 | 0.00 | 43.64 | 4.16 |
3835 | 5289 | 3.572604 | ACTTCGTAAGCAGTAGGACAC | 57.427 | 47.619 | 0.00 | 0.00 | 43.64 | 3.67 |
3836 | 5290 | 4.038282 | TGAAACTTCGTAAGCAGTAGGACA | 59.962 | 41.667 | 0.00 | 0.00 | 45.08 | 4.02 |
3837 | 5291 | 4.553323 | TGAAACTTCGTAAGCAGTAGGAC | 58.447 | 43.478 | 0.00 | 0.00 | 45.08 | 3.85 |
3838 | 5292 | 4.859304 | TGAAACTTCGTAAGCAGTAGGA | 57.141 | 40.909 | 0.00 | 0.00 | 45.08 | 2.94 |
3839 | 5293 | 4.330074 | CCATGAAACTTCGTAAGCAGTAGG | 59.670 | 45.833 | 0.00 | 0.00 | 45.08 | 3.18 |
3840 | 5294 | 5.168569 | TCCATGAAACTTCGTAAGCAGTAG | 58.831 | 41.667 | 0.00 | 0.00 | 45.08 | 2.57 |
3841 | 5295 | 5.142061 | TCCATGAAACTTCGTAAGCAGTA | 57.858 | 39.130 | 0.00 | 0.00 | 45.08 | 2.74 |
3843 | 5297 | 3.997021 | ACTCCATGAAACTTCGTAAGCAG | 59.003 | 43.478 | 0.00 | 0.00 | 36.38 | 4.24 |
3844 | 5298 | 3.745975 | CACTCCATGAAACTTCGTAAGCA | 59.254 | 43.478 | 0.00 | 0.00 | 37.18 | 3.91 |
3845 | 5299 | 3.746492 | ACACTCCATGAAACTTCGTAAGC | 59.254 | 43.478 | 0.00 | 0.00 | 37.18 | 3.09 |
3846 | 5300 | 5.924475 | AACACTCCATGAAACTTCGTAAG | 57.076 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
3847 | 5301 | 6.518493 | AGTAACACTCCATGAAACTTCGTAA | 58.482 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3848 | 5302 | 6.092955 | AGTAACACTCCATGAAACTTCGTA | 57.907 | 37.500 | 0.00 | 0.00 | 0.00 | 3.43 |
3849 | 5303 | 4.957296 | AGTAACACTCCATGAAACTTCGT | 58.043 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
3850 | 5304 | 5.517037 | GAGTAACACTCCATGAAACTTCG | 57.483 | 43.478 | 0.00 | 0.00 | 39.28 | 3.79 |
3878 | 5332 | 7.310664 | GCCGTAGCTTTTATTTAAGAACCTTT | 58.689 | 34.615 | 0.00 | 0.00 | 35.50 | 3.11 |
3919 | 5373 | 8.804688 | GTTTGCATAAAAGTGTAAACATACCA | 57.195 | 30.769 | 13.23 | 0.00 | 46.86 | 3.25 |
3925 | 5379 | 6.201997 | CCTTGGGTTTGCATAAAAGTGTAAAC | 59.798 | 38.462 | 10.70 | 10.70 | 46.90 | 2.01 |
3992 | 5446 | 2.315176 | TGTTGATGGGGAGTGGTTTTG | 58.685 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
3993 | 5447 | 2.765689 | TGTTGATGGGGAGTGGTTTT | 57.234 | 45.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3994 | 5448 | 2.765689 | TTGTTGATGGGGAGTGGTTT | 57.234 | 45.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3997 | 5451 | 2.102578 | GGATTTGTTGATGGGGAGTGG | 58.897 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4002 | 5456 | 5.264395 | ACTCTAAAGGATTTGTTGATGGGG | 58.736 | 41.667 | 0.00 | 0.00 | 39.63 | 4.96 |
4009 | 5463 | 7.309438 | GGCATGAAGAACTCTAAAGGATTTGTT | 60.309 | 37.037 | 0.00 | 0.00 | 39.63 | 2.83 |
4012 | 5466 | 5.355350 | CGGCATGAAGAACTCTAAAGGATTT | 59.645 | 40.000 | 0.00 | 0.00 | 43.42 | 2.17 |
4023 | 5478 | 4.761739 | TGAAGAAATTCGGCATGAAGAACT | 59.238 | 37.500 | 0.00 | 0.00 | 40.65 | 3.01 |
4077 | 5532 | 9.816787 | AAATAAAGATAACAAAGGAAGGTACCA | 57.183 | 29.630 | 15.94 | 0.00 | 0.00 | 3.25 |
4110 | 5565 | 2.251893 | GCGAGTTCAAGTACTTCCTCG | 58.748 | 52.381 | 27.99 | 27.99 | 43.31 | 4.63 |
4117 | 5572 | 2.380084 | TGATGGGCGAGTTCAAGTAC | 57.620 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4123 | 5578 | 2.695314 | GTCCATGATGGGCGAGTTC | 58.305 | 57.895 | 12.26 | 0.00 | 38.32 | 3.01 |
4124 | 5579 | 4.963878 | GTCCATGATGGGCGAGTT | 57.036 | 55.556 | 12.26 | 0.00 | 38.32 | 3.01 |
4130 | 5585 | 3.894759 | AGTTTGAGATGTCCATGATGGG | 58.105 | 45.455 | 12.26 | 0.00 | 38.32 | 4.00 |
4243 | 5698 | 8.908786 | TGACTCAACAATCTTCACTAAGAAAT | 57.091 | 30.769 | 0.00 | 0.00 | 44.75 | 2.17 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.