Multiple sequence alignment - TraesCS1B01G276800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G276800 chr1B 100.000 2734 0 0 1 2734 484364959 484367692 0.000000e+00 5049.0
1 TraesCS1B01G276800 chr1B 78.071 985 119 59 796 1753 484296973 484297887 1.440000e-147 532.0
2 TraesCS1B01G276800 chr1B 95.880 267 11 0 1303 1569 484147225 484147491 1.500000e-117 433.0
3 TraesCS1B01G276800 chr1B 95.880 267 11 0 1303 1569 484214212 484214478 1.500000e-117 433.0
4 TraesCS1B01G276800 chr1B 78.035 173 27 7 433 595 46872032 46871861 6.230000e-17 99.0
5 TraesCS1B01G276800 chr1D 89.590 2075 121 50 711 2734 361907265 361909295 0.000000e+00 2547.0
6 TraesCS1B01G276800 chr1D 83.038 395 41 18 798 1187 361802308 361802681 4.360000e-88 335.0
7 TraesCS1B01G276800 chr1D 78.306 484 58 30 1295 1759 361802745 361803200 4.490000e-68 268.0
8 TraesCS1B01G276800 chr1D 91.071 56 4 1 1683 1737 361908267 361908322 1.050000e-09 75.0
9 TraesCS1B01G276800 chr1A 89.108 2029 126 54 720 2710 461356460 461358431 0.000000e+00 2435.0
10 TraesCS1B01G276800 chr1A 82.516 469 49 22 731 1187 461337314 461337761 5.520000e-102 381.0
11 TraesCS1B01G276800 chr1A 81.034 406 43 25 1295 1690 461337830 461338211 2.660000e-75 292.0
12 TraesCS1B01G276800 chr1A 82.803 157 19 7 437 585 104249721 104249565 1.710000e-27 134.0
13 TraesCS1B01G276800 chr1A 83.721 86 14 0 1084 1169 461351352 461351437 6.270000e-12 82.4
14 TraesCS1B01G276800 chr3A 87.336 229 19 2 889 1117 584927328 584927546 1.260000e-63 254.0
15 TraesCS1B01G276800 chr3A 83.444 151 20 5 440 590 632561511 632561366 4.750000e-28 135.0
16 TraesCS1B01G276800 chr5A 83.030 165 20 7 437 593 590563359 590563523 2.840000e-30 143.0
17 TraesCS1B01G276800 chr5A 79.191 173 26 6 440 602 474360118 474360290 8.000000e-21 111.0
18 TraesCS1B01G276800 chr2B 80.226 177 25 9 433 606 718575476 718575645 1.030000e-24 124.0
19 TraesCS1B01G276800 chr2B 80.000 160 20 7 440 589 13485483 13485640 1.040000e-19 108.0
20 TraesCS1B01G276800 chr4A 89.157 83 9 0 513 595 331469703 331469785 1.340000e-18 104.0
21 TraesCS1B01G276800 chr5D 89.873 79 8 0 519 597 35552971 35552893 4.820000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G276800 chr1B 484364959 484367692 2733 False 5049.0 5049 100.0000 1 2734 1 chr1B.!!$F4 2733
1 TraesCS1B01G276800 chr1B 484296973 484297887 914 False 532.0 532 78.0710 796 1753 1 chr1B.!!$F3 957
2 TraesCS1B01G276800 chr1D 361907265 361909295 2030 False 1311.0 2547 90.3305 711 2734 2 chr1D.!!$F2 2023
3 TraesCS1B01G276800 chr1D 361802308 361803200 892 False 301.5 335 80.6720 798 1759 2 chr1D.!!$F1 961
4 TraesCS1B01G276800 chr1A 461356460 461358431 1971 False 2435.0 2435 89.1080 720 2710 1 chr1A.!!$F2 1990
5 TraesCS1B01G276800 chr1A 461337314 461338211 897 False 336.5 381 81.7750 731 1690 2 chr1A.!!$F3 959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.032952 TTGAAGCTTGTCTACGGCGT 59.967 50.0 19.64 19.64 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2039 0.393132 TGGCAGTCACCACGTTCAAA 60.393 50.0 0.0 0.0 33.75 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.871238 TGTATTTCTTGTGTATAACCTTCTCTC 57.129 33.333 0.00 0.00 0.00 3.20
34 35 9.660180 ATTTCTTGTGTATAACCTTCTCTCTTC 57.340 33.333 0.00 0.00 0.00 2.87
35 36 8.423906 TTCTTGTGTATAACCTTCTCTCTTCT 57.576 34.615 0.00 0.00 0.00 2.85
36 37 9.529823 TTCTTGTGTATAACCTTCTCTCTTCTA 57.470 33.333 0.00 0.00 0.00 2.10
37 38 9.702253 TCTTGTGTATAACCTTCTCTCTTCTAT 57.298 33.333 0.00 0.00 0.00 1.98
48 49 9.549984 ACCTTCTCTCTTCTATAAAGTTAAGGT 57.450 33.333 0.00 0.00 37.56 3.50
49 50 9.810545 CCTTCTCTCTTCTATAAAGTTAAGGTG 57.189 37.037 0.00 0.00 0.00 4.00
50 51 9.308318 CTTCTCTCTTCTATAAAGTTAAGGTGC 57.692 37.037 0.00 0.00 0.00 5.01
51 52 8.362464 TCTCTCTTCTATAAAGTTAAGGTGCA 57.638 34.615 0.00 0.00 0.00 4.57
52 53 8.251721 TCTCTCTTCTATAAAGTTAAGGTGCAC 58.748 37.037 8.80 8.80 0.00 4.57
53 54 7.903145 TCTCTTCTATAAAGTTAAGGTGCACA 58.097 34.615 20.43 0.00 0.00 4.57
54 55 7.817962 TCTCTTCTATAAAGTTAAGGTGCACAC 59.182 37.037 20.43 8.13 0.00 3.82
55 56 7.676947 TCTTCTATAAAGTTAAGGTGCACACT 58.323 34.615 20.43 10.57 0.00 3.55
56 57 8.154856 TCTTCTATAAAGTTAAGGTGCACACTT 58.845 33.333 20.43 20.08 0.00 3.16
57 58 8.685838 TTCTATAAAGTTAAGGTGCACACTTT 57.314 30.769 26.53 26.53 41.33 2.66
58 59 8.094798 TCTATAAAGTTAAGGTGCACACTTTG 57.905 34.615 29.26 19.05 39.31 2.77
68 69 0.435008 GCACACTTTGCGTACTCTCG 59.565 55.000 0.00 0.00 42.79 4.04
69 70 1.060713 CACACTTTGCGTACTCTCGG 58.939 55.000 0.00 0.00 0.00 4.63
70 71 0.956633 ACACTTTGCGTACTCTCGGA 59.043 50.000 0.00 0.00 0.00 4.55
71 72 1.338973 ACACTTTGCGTACTCTCGGAA 59.661 47.619 0.00 0.00 39.14 4.30
72 73 2.223876 ACACTTTGCGTACTCTCGGAAA 60.224 45.455 5.78 5.78 45.47 3.13
73 74 2.798283 CACTTTGCGTACTCTCGGAAAA 59.202 45.455 7.11 0.00 46.43 2.29
74 75 3.246699 CACTTTGCGTACTCTCGGAAAAA 59.753 43.478 7.11 0.00 46.43 1.94
96 97 7.823745 AAAAGAATCTGCTACTTCCAAAAGA 57.176 32.000 0.00 0.00 36.30 2.52
97 98 7.446001 AAAGAATCTGCTACTTCCAAAAGAG 57.554 36.000 0.00 0.00 36.30 2.85
98 99 4.940654 AGAATCTGCTACTTCCAAAAGAGC 59.059 41.667 0.00 0.00 36.76 4.09
99 100 3.769739 TCTGCTACTTCCAAAAGAGCA 57.230 42.857 9.99 9.99 40.32 4.26
100 101 4.292186 TCTGCTACTTCCAAAAGAGCAT 57.708 40.909 10.51 0.00 41.02 3.79
101 102 4.655963 TCTGCTACTTCCAAAAGAGCATT 58.344 39.130 10.51 0.00 41.02 3.56
102 103 5.072741 TCTGCTACTTCCAAAAGAGCATTT 58.927 37.500 10.51 0.00 41.02 2.32
103 104 5.536161 TCTGCTACTTCCAAAAGAGCATTTT 59.464 36.000 10.51 0.00 41.02 1.82
104 105 6.040842 TCTGCTACTTCCAAAAGAGCATTTTT 59.959 34.615 10.51 0.00 41.02 1.94
105 106 6.215845 TGCTACTTCCAAAAGAGCATTTTTC 58.784 36.000 0.00 0.00 39.03 2.29
106 107 6.040842 TGCTACTTCCAAAAGAGCATTTTTCT 59.959 34.615 0.00 0.00 39.03 2.52
107 108 7.230510 TGCTACTTCCAAAAGAGCATTTTTCTA 59.769 33.333 0.00 0.00 39.03 2.10
108 109 8.246871 GCTACTTCCAAAAGAGCATTTTTCTAT 58.753 33.333 0.00 0.00 36.49 1.98
111 112 9.481340 ACTTCCAAAAGAGCATTTTTCTATTTC 57.519 29.630 0.00 0.00 36.30 2.17
112 113 9.702494 CTTCCAAAAGAGCATTTTTCTATTTCT 57.298 29.630 0.00 0.00 34.14 2.52
113 114 9.480053 TTCCAAAAGAGCATTTTTCTATTTCTG 57.520 29.630 0.00 0.00 0.00 3.02
114 115 7.599998 TCCAAAAGAGCATTTTTCTATTTCTGC 59.400 33.333 0.00 0.00 0.00 4.26
115 116 7.385752 CCAAAAGAGCATTTTTCTATTTCTGCA 59.614 33.333 0.00 0.00 32.18 4.41
116 117 8.767085 CAAAAGAGCATTTTTCTATTTCTGCAA 58.233 29.630 0.00 0.00 32.18 4.08
117 118 8.530269 AAAGAGCATTTTTCTATTTCTGCAAG 57.470 30.769 0.00 0.00 32.18 4.01
118 119 7.224522 AGAGCATTTTTCTATTTCTGCAAGT 57.775 32.000 0.00 0.00 33.76 3.16
119 120 7.664758 AGAGCATTTTTCTATTTCTGCAAGTT 58.335 30.769 0.00 0.00 33.76 2.66
120 121 7.597743 AGAGCATTTTTCTATTTCTGCAAGTTG 59.402 33.333 0.00 0.00 33.76 3.16
121 122 6.146673 AGCATTTTTCTATTTCTGCAAGTTGC 59.853 34.615 21.17 21.17 45.29 4.17
130 131 3.018973 GCAAGTTGCGTCGGAACA 58.981 55.556 27.91 0.00 31.71 3.18
131 132 1.353804 GCAAGTTGCGTCGGAACAA 59.646 52.632 27.91 6.07 31.71 2.83
132 133 0.928451 GCAAGTTGCGTCGGAACAAC 60.928 55.000 27.91 16.89 31.71 3.32
133 134 0.653323 CAAGTTGCGTCGGAACAACG 60.653 55.000 27.91 13.82 33.17 4.10
134 135 0.806884 AAGTTGCGTCGGAACAACGA 60.807 50.000 27.91 0.00 41.13 3.85
135 136 1.200839 GTTGCGTCGGAACAACGAG 59.799 57.895 22.72 0.00 44.42 4.18
136 137 1.066093 TTGCGTCGGAACAACGAGA 59.934 52.632 0.00 0.00 44.42 4.04
137 138 0.937699 TTGCGTCGGAACAACGAGAG 60.938 55.000 0.00 0.00 44.42 3.20
149 150 2.932663 ACGAGAGTGTGCAAATGGG 58.067 52.632 0.00 0.00 46.97 4.00
150 151 1.237285 ACGAGAGTGTGCAAATGGGC 61.237 55.000 0.00 0.00 46.97 5.36
151 152 0.957395 CGAGAGTGTGCAAATGGGCT 60.957 55.000 0.00 0.00 34.04 5.19
152 153 0.524862 GAGAGTGTGCAAATGGGCTG 59.475 55.000 0.00 0.00 34.04 4.85
153 154 0.896940 AGAGTGTGCAAATGGGCTGG 60.897 55.000 0.00 0.00 34.04 4.85
154 155 1.880819 GAGTGTGCAAATGGGCTGGG 61.881 60.000 0.00 0.00 34.04 4.45
155 156 2.604079 TGTGCAAATGGGCTGGGG 60.604 61.111 0.00 0.00 34.04 4.96
156 157 2.283821 GTGCAAATGGGCTGGGGA 60.284 61.111 0.00 0.00 34.04 4.81
157 158 1.912763 GTGCAAATGGGCTGGGGAA 60.913 57.895 0.00 0.00 34.04 3.97
158 159 1.610086 TGCAAATGGGCTGGGGAAG 60.610 57.895 0.00 0.00 34.04 3.46
159 160 1.610379 GCAAATGGGCTGGGGAAGT 60.610 57.895 0.00 0.00 0.00 3.01
160 161 1.891722 GCAAATGGGCTGGGGAAGTG 61.892 60.000 0.00 0.00 0.00 3.16
161 162 0.251742 CAAATGGGCTGGGGAAGTGA 60.252 55.000 0.00 0.00 0.00 3.41
162 163 0.251787 AAATGGGCTGGGGAAGTGAC 60.252 55.000 0.00 0.00 0.00 3.67
163 164 2.484287 AATGGGCTGGGGAAGTGACG 62.484 60.000 0.00 0.00 0.00 4.35
164 165 4.410400 GGGCTGGGGAAGTGACGG 62.410 72.222 0.00 0.00 0.00 4.79
165 166 4.410400 GGCTGGGGAAGTGACGGG 62.410 72.222 0.00 0.00 0.00 5.28
166 167 3.637273 GCTGGGGAAGTGACGGGT 61.637 66.667 0.00 0.00 0.00 5.28
167 168 2.347490 CTGGGGAAGTGACGGGTG 59.653 66.667 0.00 0.00 0.00 4.61
168 169 3.246112 TGGGGAAGTGACGGGTGG 61.246 66.667 0.00 0.00 0.00 4.61
169 170 4.717313 GGGGAAGTGACGGGTGGC 62.717 72.222 0.00 0.00 0.00 5.01
170 171 3.637273 GGGAAGTGACGGGTGGCT 61.637 66.667 0.00 0.00 0.00 4.75
171 172 2.358737 GGAAGTGACGGGTGGCTG 60.359 66.667 0.00 0.00 0.00 4.85
172 173 2.358737 GAAGTGACGGGTGGCTGG 60.359 66.667 0.00 0.00 0.00 4.85
173 174 3.168528 AAGTGACGGGTGGCTGGT 61.169 61.111 0.00 0.00 0.00 4.00
174 175 1.823169 GAAGTGACGGGTGGCTGGTA 61.823 60.000 0.00 0.00 0.00 3.25
175 176 1.827399 AAGTGACGGGTGGCTGGTAG 61.827 60.000 0.00 0.00 0.00 3.18
176 177 2.118732 TGACGGGTGGCTGGTAGA 59.881 61.111 0.00 0.00 0.00 2.59
177 178 1.982395 TGACGGGTGGCTGGTAGAG 60.982 63.158 0.00 0.00 0.00 2.43
178 179 1.681327 GACGGGTGGCTGGTAGAGA 60.681 63.158 0.00 0.00 0.00 3.10
179 180 1.668101 GACGGGTGGCTGGTAGAGAG 61.668 65.000 0.00 0.00 0.00 3.20
180 181 1.379977 CGGGTGGCTGGTAGAGAGA 60.380 63.158 0.00 0.00 0.00 3.10
181 182 0.970937 CGGGTGGCTGGTAGAGAGAA 60.971 60.000 0.00 0.00 0.00 2.87
182 183 0.827368 GGGTGGCTGGTAGAGAGAAG 59.173 60.000 0.00 0.00 0.00 2.85
183 184 1.562783 GGTGGCTGGTAGAGAGAAGT 58.437 55.000 0.00 0.00 0.00 3.01
184 185 2.623502 GGGTGGCTGGTAGAGAGAAGTA 60.624 54.545 0.00 0.00 0.00 2.24
185 186 2.691011 GGTGGCTGGTAGAGAGAAGTAG 59.309 54.545 0.00 0.00 0.00 2.57
186 187 3.622630 GTGGCTGGTAGAGAGAAGTAGA 58.377 50.000 0.00 0.00 0.00 2.59
187 188 4.017808 GTGGCTGGTAGAGAGAAGTAGAA 58.982 47.826 0.00 0.00 0.00 2.10
188 189 4.017808 TGGCTGGTAGAGAGAAGTAGAAC 58.982 47.826 0.00 0.00 0.00 3.01
189 190 4.017808 GGCTGGTAGAGAGAAGTAGAACA 58.982 47.826 0.00 0.00 0.00 3.18
190 191 4.463186 GGCTGGTAGAGAGAAGTAGAACAA 59.537 45.833 0.00 0.00 0.00 2.83
191 192 5.047235 GGCTGGTAGAGAGAAGTAGAACAAA 60.047 44.000 0.00 0.00 0.00 2.83
192 193 6.351456 GGCTGGTAGAGAGAAGTAGAACAAAT 60.351 42.308 0.00 0.00 0.00 2.32
193 194 7.147880 GGCTGGTAGAGAGAAGTAGAACAAATA 60.148 40.741 0.00 0.00 0.00 1.40
194 195 8.417884 GCTGGTAGAGAGAAGTAGAACAAATAT 58.582 37.037 0.00 0.00 0.00 1.28
219 220 7.072177 TCATTATTTTGAAGCTTGTCTACGG 57.928 36.000 2.10 0.00 0.00 4.02
220 221 3.831715 ATTTTGAAGCTTGTCTACGGC 57.168 42.857 2.10 0.00 0.00 5.68
221 222 1.144969 TTTGAAGCTTGTCTACGGCG 58.855 50.000 2.10 4.80 0.00 6.46
222 223 0.032952 TTGAAGCTTGTCTACGGCGT 59.967 50.000 19.64 19.64 0.00 5.68
223 224 0.388134 TGAAGCTTGTCTACGGCGTC 60.388 55.000 19.21 2.21 35.64 5.19
224 225 1.403972 GAAGCTTGTCTACGGCGTCG 61.404 60.000 19.21 11.43 43.02 5.12
225 226 2.814183 AAGCTTGTCTACGGCGTCGG 62.814 60.000 19.21 11.49 41.39 4.79
226 227 2.564975 CTTGTCTACGGCGTCGGT 59.435 61.111 19.21 1.44 41.39 4.69
227 228 1.513586 CTTGTCTACGGCGTCGGTC 60.514 63.158 19.21 9.44 41.39 4.79
228 229 2.191354 CTTGTCTACGGCGTCGGTCA 62.191 60.000 19.21 12.08 41.39 4.02
229 230 1.588824 TTGTCTACGGCGTCGGTCAT 61.589 55.000 19.21 0.00 41.39 3.06
230 231 1.585521 GTCTACGGCGTCGGTCATG 60.586 63.158 19.21 0.00 41.39 3.07
231 232 2.278596 CTACGGCGTCGGTCATGG 60.279 66.667 19.21 0.00 41.39 3.66
232 233 4.501714 TACGGCGTCGGTCATGGC 62.502 66.667 19.21 0.00 41.39 4.40
251 252 3.842923 CCCAGAGCCGAGCGTCAT 61.843 66.667 0.00 0.00 0.00 3.06
252 253 2.584418 CCAGAGCCGAGCGTCATG 60.584 66.667 0.00 0.00 0.00 3.07
253 254 2.491621 CAGAGCCGAGCGTCATGA 59.508 61.111 0.00 0.00 0.00 3.07
254 255 1.153765 CAGAGCCGAGCGTCATGAA 60.154 57.895 0.00 0.00 0.00 2.57
255 256 0.737367 CAGAGCCGAGCGTCATGAAA 60.737 55.000 0.00 0.00 0.00 2.69
256 257 0.037326 AGAGCCGAGCGTCATGAAAA 60.037 50.000 0.00 0.00 0.00 2.29
257 258 0.095417 GAGCCGAGCGTCATGAAAAC 59.905 55.000 0.00 0.00 0.00 2.43
258 259 0.602638 AGCCGAGCGTCATGAAAACA 60.603 50.000 0.00 0.00 0.00 2.83
259 260 0.237235 GCCGAGCGTCATGAAAACAA 59.763 50.000 0.00 0.00 0.00 2.83
260 261 1.950472 CCGAGCGTCATGAAAACAAC 58.050 50.000 0.00 0.00 0.00 3.32
261 262 1.399727 CCGAGCGTCATGAAAACAACC 60.400 52.381 0.00 0.00 0.00 3.77
262 263 1.399727 CGAGCGTCATGAAAACAACCC 60.400 52.381 0.00 0.00 0.00 4.11
263 264 1.606668 GAGCGTCATGAAAACAACCCA 59.393 47.619 0.00 0.00 0.00 4.51
264 265 2.228822 GAGCGTCATGAAAACAACCCAT 59.771 45.455 0.00 0.00 0.00 4.00
265 266 2.627699 AGCGTCATGAAAACAACCCATT 59.372 40.909 0.00 0.00 0.00 3.16
266 267 3.069443 AGCGTCATGAAAACAACCCATTT 59.931 39.130 0.00 0.00 0.00 2.32
267 268 3.807071 GCGTCATGAAAACAACCCATTTT 59.193 39.130 0.00 0.00 31.96 1.82
268 269 4.985409 GCGTCATGAAAACAACCCATTTTA 59.015 37.500 0.00 0.00 29.44 1.52
269 270 5.637387 GCGTCATGAAAACAACCCATTTTAT 59.363 36.000 0.00 0.00 29.44 1.40
270 271 6.400940 GCGTCATGAAAACAACCCATTTTATG 60.401 38.462 0.00 0.00 35.20 1.90
271 272 6.865726 CGTCATGAAAACAACCCATTTTATGA 59.134 34.615 0.00 0.00 38.45 2.15
272 273 7.383572 CGTCATGAAAACAACCCATTTTATGAA 59.616 33.333 0.00 0.00 40.75 2.57
273 274 9.050601 GTCATGAAAACAACCCATTTTATGAAA 57.949 29.630 0.00 0.00 40.75 2.69
274 275 9.790344 TCATGAAAACAACCCATTTTATGAAAT 57.210 25.926 0.00 0.00 38.08 2.17
312 313 6.479095 TTTTTGCTGAACTTTGTGAAAAGG 57.521 33.333 3.49 0.00 34.18 3.11
313 314 5.398603 TTTGCTGAACTTTGTGAAAAGGA 57.601 34.783 3.49 0.00 34.18 3.36
314 315 4.370364 TGCTGAACTTTGTGAAAAGGAC 57.630 40.909 3.49 0.00 34.18 3.85
315 316 3.130340 TGCTGAACTTTGTGAAAAGGACC 59.870 43.478 3.49 0.00 34.18 4.46
316 317 3.130340 GCTGAACTTTGTGAAAAGGACCA 59.870 43.478 0.00 0.00 34.18 4.02
317 318 4.202151 GCTGAACTTTGTGAAAAGGACCAT 60.202 41.667 0.00 0.00 34.18 3.55
318 319 5.682212 GCTGAACTTTGTGAAAAGGACCATT 60.682 40.000 0.00 0.00 34.18 3.16
319 320 6.293004 TGAACTTTGTGAAAAGGACCATTT 57.707 33.333 0.00 0.00 34.18 2.32
320 321 6.706295 TGAACTTTGTGAAAAGGACCATTTT 58.294 32.000 0.00 0.00 35.12 1.82
321 322 7.164803 TGAACTTTGTGAAAAGGACCATTTTT 58.835 30.769 0.00 0.00 32.62 1.94
322 323 8.314751 TGAACTTTGTGAAAAGGACCATTTTTA 58.685 29.630 0.00 0.00 32.62 1.52
323 324 9.325198 GAACTTTGTGAAAAGGACCATTTTTAT 57.675 29.630 0.00 0.00 32.62 1.40
324 325 8.887036 ACTTTGTGAAAAGGACCATTTTTATC 57.113 30.769 0.00 0.00 32.62 1.75
325 326 7.651704 ACTTTGTGAAAAGGACCATTTTTATCG 59.348 33.333 0.00 0.00 32.62 2.92
326 327 6.885952 TGTGAAAAGGACCATTTTTATCGA 57.114 33.333 0.00 0.00 32.62 3.59
327 328 7.461182 TGTGAAAAGGACCATTTTTATCGAT 57.539 32.000 2.16 2.16 32.62 3.59
328 329 7.891561 TGTGAAAAGGACCATTTTTATCGATT 58.108 30.769 1.71 0.00 32.62 3.34
329 330 8.364142 TGTGAAAAGGACCATTTTTATCGATTT 58.636 29.630 1.71 0.00 32.62 2.17
330 331 9.203421 GTGAAAAGGACCATTTTTATCGATTTT 57.797 29.630 1.71 0.00 32.62 1.82
331 332 9.418045 TGAAAAGGACCATTTTTATCGATTTTC 57.582 29.630 1.71 4.25 32.62 2.29
332 333 9.418045 GAAAAGGACCATTTTTATCGATTTTCA 57.582 29.630 1.71 0.00 33.42 2.69
333 334 8.986477 AAAGGACCATTTTTATCGATTTTCAG 57.014 30.769 1.71 0.00 0.00 3.02
334 335 7.938140 AGGACCATTTTTATCGATTTTCAGA 57.062 32.000 1.71 0.00 0.00 3.27
335 336 8.348285 AGGACCATTTTTATCGATTTTCAGAA 57.652 30.769 1.71 0.00 0.00 3.02
336 337 8.802267 AGGACCATTTTTATCGATTTTCAGAAA 58.198 29.630 1.71 0.00 0.00 2.52
337 338 8.860128 GGACCATTTTTATCGATTTTCAGAAAC 58.140 33.333 1.71 0.00 0.00 2.78
338 339 9.626045 GACCATTTTTATCGATTTTCAGAAACT 57.374 29.630 1.71 0.00 0.00 2.66
339 340 9.981114 ACCATTTTTATCGATTTTCAGAAACTT 57.019 25.926 1.71 0.00 0.00 2.66
348 349 9.838339 ATCGATTTTCAGAAACTTATCTATGGT 57.162 29.630 0.00 0.00 0.00 3.55
349 350 9.314321 TCGATTTTCAGAAACTTATCTATGGTC 57.686 33.333 0.00 0.00 0.00 4.02
350 351 9.319143 CGATTTTCAGAAACTTATCTATGGTCT 57.681 33.333 0.00 0.00 0.00 3.85
352 353 8.792830 TTTTCAGAAACTTATCTATGGTCTGG 57.207 34.615 0.00 0.00 33.45 3.86
353 354 5.918608 TCAGAAACTTATCTATGGTCTGGC 58.081 41.667 0.00 0.00 33.45 4.85
354 355 5.425217 TCAGAAACTTATCTATGGTCTGGCA 59.575 40.000 0.00 0.00 33.45 4.92
355 356 5.757320 CAGAAACTTATCTATGGTCTGGCAG 59.243 44.000 8.58 8.58 0.00 4.85
356 357 5.426833 AGAAACTTATCTATGGTCTGGCAGT 59.573 40.000 15.27 0.00 0.00 4.40
357 358 4.679373 ACTTATCTATGGTCTGGCAGTG 57.321 45.455 15.27 0.00 0.00 3.66
358 359 4.033709 ACTTATCTATGGTCTGGCAGTGT 58.966 43.478 15.27 1.91 0.00 3.55
359 360 2.996249 ATCTATGGTCTGGCAGTGTG 57.004 50.000 15.27 0.87 0.00 3.82
360 361 1.937191 TCTATGGTCTGGCAGTGTGA 58.063 50.000 15.27 3.21 0.00 3.58
361 362 2.256306 TCTATGGTCTGGCAGTGTGAA 58.744 47.619 15.27 0.00 0.00 3.18
362 363 2.840038 TCTATGGTCTGGCAGTGTGAAT 59.160 45.455 15.27 5.43 0.00 2.57
363 364 2.119801 ATGGTCTGGCAGTGTGAATC 57.880 50.000 15.27 0.00 0.00 2.52
364 365 1.059098 TGGTCTGGCAGTGTGAATCT 58.941 50.000 15.27 0.00 0.00 2.40
365 366 1.421268 TGGTCTGGCAGTGTGAATCTT 59.579 47.619 15.27 0.00 0.00 2.40
366 367 1.808945 GGTCTGGCAGTGTGAATCTTG 59.191 52.381 15.27 0.00 0.00 3.02
367 368 1.808945 GTCTGGCAGTGTGAATCTTGG 59.191 52.381 15.27 0.00 0.00 3.61
368 369 1.171308 CTGGCAGTGTGAATCTTGGG 58.829 55.000 6.28 0.00 0.00 4.12
369 370 0.251297 TGGCAGTGTGAATCTTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
370 371 1.598701 GGCAGTGTGAATCTTGGGGC 61.599 60.000 0.00 0.00 0.00 5.80
371 372 1.926511 GCAGTGTGAATCTTGGGGCG 61.927 60.000 0.00 0.00 0.00 6.13
372 373 1.675641 AGTGTGAATCTTGGGGCGC 60.676 57.895 0.00 0.00 0.00 6.53
373 374 2.361104 TGTGAATCTTGGGGCGCC 60.361 61.111 21.18 21.18 0.00 6.53
374 375 3.508840 GTGAATCTTGGGGCGCCG 61.509 66.667 22.54 6.52 0.00 6.46
375 376 3.711814 TGAATCTTGGGGCGCCGA 61.712 61.111 22.54 12.79 0.00 5.54
376 377 2.897350 GAATCTTGGGGCGCCGAG 60.897 66.667 27.53 27.53 0.00 4.63
377 378 3.682292 GAATCTTGGGGCGCCGAGT 62.682 63.158 30.62 16.85 0.00 4.18
378 379 3.268103 AATCTTGGGGCGCCGAGTT 62.268 57.895 30.62 22.44 0.00 3.01
379 380 3.682292 ATCTTGGGGCGCCGAGTTC 62.682 63.158 30.62 5.58 0.00 3.01
384 385 2.818274 GGGCGCCGAGTTCGAAAT 60.818 61.111 22.54 0.00 43.02 2.17
385 386 1.519898 GGGCGCCGAGTTCGAAATA 60.520 57.895 22.54 0.00 43.02 1.40
386 387 1.634753 GGCGCCGAGTTCGAAATAC 59.365 57.895 12.58 0.00 43.02 1.89
387 388 0.804933 GGCGCCGAGTTCGAAATACT 60.805 55.000 12.58 0.00 43.02 2.12
388 389 1.534595 GGCGCCGAGTTCGAAATACTA 60.535 52.381 12.58 0.00 43.02 1.82
389 390 2.391879 GCGCCGAGTTCGAAATACTAT 58.608 47.619 0.00 0.00 43.02 2.12
390 391 2.153247 GCGCCGAGTTCGAAATACTATG 59.847 50.000 0.00 0.00 43.02 2.23
391 392 2.153247 CGCCGAGTTCGAAATACTATGC 59.847 50.000 0.00 0.00 43.02 3.14
392 393 3.381949 GCCGAGTTCGAAATACTATGCT 58.618 45.455 0.00 0.00 43.02 3.79
393 394 3.802685 GCCGAGTTCGAAATACTATGCTT 59.197 43.478 0.00 0.00 43.02 3.91
394 395 4.270325 GCCGAGTTCGAAATACTATGCTTT 59.730 41.667 0.00 0.00 43.02 3.51
395 396 5.220605 GCCGAGTTCGAAATACTATGCTTTT 60.221 40.000 0.00 0.00 43.02 2.27
396 397 6.674760 GCCGAGTTCGAAATACTATGCTTTTT 60.675 38.462 0.00 0.00 43.02 1.94
414 415 2.543777 TTTTTCAGAGACAGACCCGG 57.456 50.000 0.00 0.00 0.00 5.73
415 416 1.712056 TTTTCAGAGACAGACCCGGA 58.288 50.000 0.73 0.00 0.00 5.14
416 417 0.966920 TTTCAGAGACAGACCCGGAC 59.033 55.000 0.73 0.00 0.00 4.79
417 418 0.898789 TTCAGAGACAGACCCGGACC 60.899 60.000 0.73 0.00 0.00 4.46
418 419 1.606601 CAGAGACAGACCCGGACCA 60.607 63.158 0.73 0.00 0.00 4.02
419 420 1.155390 AGAGACAGACCCGGACCAA 59.845 57.895 0.73 0.00 0.00 3.67
420 421 0.252284 AGAGACAGACCCGGACCAAT 60.252 55.000 0.73 0.00 0.00 3.16
421 422 0.108138 GAGACAGACCCGGACCAATG 60.108 60.000 0.73 0.00 0.00 2.82
422 423 0.544357 AGACAGACCCGGACCAATGA 60.544 55.000 0.73 0.00 0.00 2.57
423 424 0.108138 GACAGACCCGGACCAATGAG 60.108 60.000 0.73 0.00 0.00 2.90
424 425 0.544357 ACAGACCCGGACCAATGAGA 60.544 55.000 0.73 0.00 0.00 3.27
425 426 0.833287 CAGACCCGGACCAATGAGAT 59.167 55.000 0.73 0.00 0.00 2.75
426 427 1.210478 CAGACCCGGACCAATGAGATT 59.790 52.381 0.73 0.00 0.00 2.40
427 428 1.210478 AGACCCGGACCAATGAGATTG 59.790 52.381 0.73 0.00 39.94 2.67
428 429 0.991920 ACCCGGACCAATGAGATTGT 59.008 50.000 0.73 0.00 38.59 2.71
429 430 1.065418 ACCCGGACCAATGAGATTGTC 60.065 52.381 0.73 0.00 38.59 3.18
430 431 1.668419 CCGGACCAATGAGATTGTCC 58.332 55.000 0.00 0.00 38.59 4.02
431 432 1.210478 CCGGACCAATGAGATTGTCCT 59.790 52.381 0.00 0.00 37.83 3.85
432 433 2.356125 CCGGACCAATGAGATTGTCCTT 60.356 50.000 0.00 0.00 37.83 3.36
433 434 3.118408 CCGGACCAATGAGATTGTCCTTA 60.118 47.826 0.00 0.00 37.83 2.69
434 435 4.122776 CGGACCAATGAGATTGTCCTTAG 58.877 47.826 6.03 0.00 37.83 2.18
435 436 4.383118 CGGACCAATGAGATTGTCCTTAGT 60.383 45.833 6.03 0.00 37.83 2.24
436 437 4.878397 GGACCAATGAGATTGTCCTTAGTG 59.122 45.833 0.00 0.00 38.59 2.74
437 438 4.848357 ACCAATGAGATTGTCCTTAGTGG 58.152 43.478 0.00 0.00 41.68 4.00
438 439 4.289672 ACCAATGAGATTGTCCTTAGTGGT 59.710 41.667 0.00 0.00 43.29 4.16
439 440 5.487488 ACCAATGAGATTGTCCTTAGTGGTA 59.513 40.000 6.11 0.00 45.22 3.25
440 441 6.051717 CCAATGAGATTGTCCTTAGTGGTAG 58.948 44.000 0.00 0.00 38.59 3.18
441 442 6.352222 CCAATGAGATTGTCCTTAGTGGTAGT 60.352 42.308 0.00 0.00 38.59 2.73
442 443 7.147724 CCAATGAGATTGTCCTTAGTGGTAGTA 60.148 40.741 0.00 0.00 38.59 1.82
443 444 8.424918 CAATGAGATTGTCCTTAGTGGTAGTAT 58.575 37.037 0.00 0.00 35.57 2.12
444 445 7.584122 TGAGATTGTCCTTAGTGGTAGTATC 57.416 40.000 0.00 0.00 37.07 2.24
445 446 7.123383 TGAGATTGTCCTTAGTGGTAGTATCA 58.877 38.462 0.00 0.00 37.07 2.15
446 447 7.785028 TGAGATTGTCCTTAGTGGTAGTATCAT 59.215 37.037 0.00 0.00 37.07 2.45
447 448 9.298250 GAGATTGTCCTTAGTGGTAGTATCATA 57.702 37.037 0.00 0.00 37.07 2.15
448 449 9.656323 AGATTGTCCTTAGTGGTAGTATCATAA 57.344 33.333 0.00 0.00 37.07 1.90
449 450 9.915629 GATTGTCCTTAGTGGTAGTATCATAAG 57.084 37.037 0.00 0.00 37.07 1.73
450 451 8.834004 TTGTCCTTAGTGGTAGTATCATAAGT 57.166 34.615 9.70 0.00 37.07 2.24
451 452 8.834004 TGTCCTTAGTGGTAGTATCATAAGTT 57.166 34.615 9.70 0.00 37.07 2.66
452 453 9.925545 TGTCCTTAGTGGTAGTATCATAAGTTA 57.074 33.333 9.70 0.00 37.07 2.24
491 492 9.913310 TGATATTTGTGTTTGATATTACCTCCA 57.087 29.630 0.00 0.00 0.00 3.86
493 494 9.693739 ATATTTGTGTTTGATATTACCTCCACA 57.306 29.630 0.00 0.00 0.00 4.17
494 495 7.825331 TTTGTGTTTGATATTACCTCCACAA 57.175 32.000 0.00 0.00 39.13 3.33
495 496 8.415950 TTTGTGTTTGATATTACCTCCACAAT 57.584 30.769 0.00 0.00 40.15 2.71
496 497 7.389803 TGTGTTTGATATTACCTCCACAATG 57.610 36.000 0.00 0.00 0.00 2.82
497 498 6.127758 TGTGTTTGATATTACCTCCACAATGC 60.128 38.462 0.00 0.00 0.00 3.56
498 499 5.948758 TGTTTGATATTACCTCCACAATGCA 59.051 36.000 0.00 0.00 0.00 3.96
499 500 6.606796 TGTTTGATATTACCTCCACAATGCAT 59.393 34.615 0.00 0.00 0.00 3.96
500 501 7.777440 TGTTTGATATTACCTCCACAATGCATA 59.223 33.333 0.00 0.00 0.00 3.14
501 502 7.744087 TTGATATTACCTCCACAATGCATAC 57.256 36.000 0.00 0.00 0.00 2.39
502 503 6.836242 TGATATTACCTCCACAATGCATACA 58.164 36.000 0.00 0.00 0.00 2.29
503 504 6.936335 TGATATTACCTCCACAATGCATACAG 59.064 38.462 0.00 0.00 0.00 2.74
504 505 4.568072 TTACCTCCACAATGCATACAGT 57.432 40.909 0.00 0.00 0.00 3.55
505 506 5.685520 TTACCTCCACAATGCATACAGTA 57.314 39.130 0.00 0.00 0.00 2.74
506 507 4.142609 ACCTCCACAATGCATACAGTAG 57.857 45.455 0.00 0.00 0.00 2.57
507 508 3.519510 ACCTCCACAATGCATACAGTAGT 59.480 43.478 0.00 0.00 0.00 2.73
508 509 4.714802 ACCTCCACAATGCATACAGTAGTA 59.285 41.667 0.00 0.00 34.10 1.82
509 510 5.366768 ACCTCCACAATGCATACAGTAGTAT 59.633 40.000 0.00 0.00 41.57 2.12
510 511 6.126768 ACCTCCACAATGCATACAGTAGTATT 60.127 38.462 0.00 0.00 38.88 1.89
511 512 6.425114 CCTCCACAATGCATACAGTAGTATTC 59.575 42.308 0.00 0.00 38.88 1.75
512 513 7.124573 TCCACAATGCATACAGTAGTATTCT 57.875 36.000 0.00 0.00 38.88 2.40
513 514 8.245195 TCCACAATGCATACAGTAGTATTCTA 57.755 34.615 0.00 0.00 38.88 2.10
514 515 8.360390 TCCACAATGCATACAGTAGTATTCTAG 58.640 37.037 0.00 0.00 38.88 2.43
515 516 8.360390 CCACAATGCATACAGTAGTATTCTAGA 58.640 37.037 0.00 0.00 38.88 2.43
516 517 9.920133 CACAATGCATACAGTAGTATTCTAGAT 57.080 33.333 0.00 0.00 38.88 1.98
517 518 9.920133 ACAATGCATACAGTAGTATTCTAGATG 57.080 33.333 0.00 0.00 38.88 2.90
520 521 8.926092 TGCATACAGTAGTATTCTAGATGACT 57.074 34.615 10.86 10.86 38.88 3.41
521 522 9.355916 TGCATACAGTAGTATTCTAGATGACTT 57.644 33.333 11.22 0.00 38.88 3.01
553 554 9.636789 ATTATTATGCATGATACATGGTAGCAT 57.363 29.630 10.16 0.40 42.98 3.79
555 556 8.672823 ATTATGCATGATACATGGTAGCATAG 57.327 34.615 10.16 5.08 42.30 2.23
556 557 5.488262 TGCATGATACATGGTAGCATAGT 57.512 39.130 7.18 10.50 0.00 2.12
557 558 6.603940 TGCATGATACATGGTAGCATAGTA 57.396 37.500 7.18 12.21 0.00 1.82
558 559 7.186570 TGCATGATACATGGTAGCATAGTAT 57.813 36.000 20.28 20.28 0.00 2.12
559 560 7.623630 TGCATGATACATGGTAGCATAGTATT 58.376 34.615 20.74 10.76 0.00 1.89
560 561 8.102676 TGCATGATACATGGTAGCATAGTATTT 58.897 33.333 20.74 13.77 0.00 1.40
561 562 9.599866 GCATGATACATGGTAGCATAGTATTTA 57.400 33.333 20.74 16.18 0.00 1.40
624 625 9.529823 TTTTATATGACATATACGACTCCCTCT 57.470 33.333 13.64 0.00 0.00 3.69
625 626 9.529823 TTTATATGACATATACGACTCCCTCTT 57.470 33.333 13.64 0.00 0.00 2.85
626 627 5.713792 ATGACATATACGACTCCCTCTTG 57.286 43.478 0.00 0.00 0.00 3.02
627 628 4.533815 TGACATATACGACTCCCTCTTGT 58.466 43.478 0.00 0.00 0.00 3.16
628 629 5.687780 TGACATATACGACTCCCTCTTGTA 58.312 41.667 0.00 0.00 0.00 2.41
629 630 6.124340 TGACATATACGACTCCCTCTTGTAA 58.876 40.000 0.00 0.00 0.00 2.41
630 631 6.604396 TGACATATACGACTCCCTCTTGTAAA 59.396 38.462 0.00 0.00 0.00 2.01
631 632 6.803642 ACATATACGACTCCCTCTTGTAAAC 58.196 40.000 0.00 0.00 0.00 2.01
632 633 6.606395 ACATATACGACTCCCTCTTGTAAACT 59.394 38.462 0.00 0.00 0.00 2.66
633 634 7.776969 ACATATACGACTCCCTCTTGTAAACTA 59.223 37.037 0.00 0.00 0.00 2.24
634 635 8.627403 CATATACGACTCCCTCTTGTAAACTAA 58.373 37.037 0.00 0.00 0.00 2.24
635 636 5.997384 ACGACTCCCTCTTGTAAACTAAT 57.003 39.130 0.00 0.00 0.00 1.73
636 637 8.757982 ATACGACTCCCTCTTGTAAACTAATA 57.242 34.615 0.00 0.00 0.00 0.98
637 638 7.657023 ACGACTCCCTCTTGTAAACTAATAT 57.343 36.000 0.00 0.00 0.00 1.28
638 639 8.757982 ACGACTCCCTCTTGTAAACTAATATA 57.242 34.615 0.00 0.00 0.00 0.86
639 640 9.193806 ACGACTCCCTCTTGTAAACTAATATAA 57.806 33.333 0.00 0.00 0.00 0.98
667 668 9.751542 AACATCTAGATCATTAGTTTACGAAGG 57.248 33.333 1.03 0.00 0.00 3.46
668 669 8.361139 ACATCTAGATCATTAGTTTACGAAGGG 58.639 37.037 1.03 0.00 0.00 3.95
669 670 8.577296 CATCTAGATCATTAGTTTACGAAGGGA 58.423 37.037 1.03 0.00 0.00 4.20
670 671 8.167605 TCTAGATCATTAGTTTACGAAGGGAG 57.832 38.462 0.00 0.00 0.00 4.30
671 672 6.793505 AGATCATTAGTTTACGAAGGGAGT 57.206 37.500 0.00 0.00 0.00 3.85
672 673 6.807789 AGATCATTAGTTTACGAAGGGAGTC 58.192 40.000 0.00 0.00 0.00 3.36
673 674 5.334724 TCATTAGTTTACGAAGGGAGTCC 57.665 43.478 0.00 0.00 0.00 3.85
675 676 6.189859 TCATTAGTTTACGAAGGGAGTCCTA 58.810 40.000 9.58 0.00 44.07 2.94
676 677 6.320672 TCATTAGTTTACGAAGGGAGTCCTAG 59.679 42.308 9.58 0.81 44.07 3.02
677 678 4.044946 AGTTTACGAAGGGAGTCCTAGT 57.955 45.455 9.58 6.84 44.07 2.57
678 679 4.015764 AGTTTACGAAGGGAGTCCTAGTC 58.984 47.826 9.58 3.32 44.07 2.59
679 680 3.726557 TTACGAAGGGAGTCCTAGTCA 57.273 47.619 9.58 0.00 44.07 3.41
680 681 2.830651 ACGAAGGGAGTCCTAGTCAT 57.169 50.000 9.58 0.00 44.07 3.06
681 682 2.657143 ACGAAGGGAGTCCTAGTCATC 58.343 52.381 9.58 0.00 44.07 2.92
682 683 2.025226 ACGAAGGGAGTCCTAGTCATCA 60.025 50.000 9.58 0.00 44.07 3.07
683 684 3.226777 CGAAGGGAGTCCTAGTCATCAT 58.773 50.000 9.58 0.00 44.07 2.45
684 685 3.639094 CGAAGGGAGTCCTAGTCATCATT 59.361 47.826 9.58 0.00 44.07 2.57
685 686 4.827835 CGAAGGGAGTCCTAGTCATCATTA 59.172 45.833 9.58 0.00 44.07 1.90
686 687 5.278561 CGAAGGGAGTCCTAGTCATCATTAC 60.279 48.000 9.58 0.00 44.07 1.89
687 688 4.145807 AGGGAGTCCTAGTCATCATTACG 58.854 47.826 9.58 0.00 42.75 3.18
688 689 3.256136 GGGAGTCCTAGTCATCATTACGG 59.744 52.174 9.58 0.00 0.00 4.02
689 690 3.256136 GGAGTCCTAGTCATCATTACGGG 59.744 52.174 0.41 0.00 0.00 5.28
690 691 4.142790 GAGTCCTAGTCATCATTACGGGA 58.857 47.826 0.00 0.00 0.00 5.14
691 692 4.543689 AGTCCTAGTCATCATTACGGGAA 58.456 43.478 0.00 0.00 0.00 3.97
692 693 4.585162 AGTCCTAGTCATCATTACGGGAAG 59.415 45.833 0.00 0.00 0.00 3.46
693 694 3.895656 TCCTAGTCATCATTACGGGAAGG 59.104 47.826 0.00 0.00 0.00 3.46
694 695 2.622064 AGTCATCATTACGGGAAGGC 57.378 50.000 0.00 0.00 0.00 4.35
695 696 2.119495 AGTCATCATTACGGGAAGGCT 58.881 47.619 0.00 0.00 0.00 4.58
696 697 2.158900 AGTCATCATTACGGGAAGGCTG 60.159 50.000 0.00 0.00 0.00 4.85
697 698 2.115427 TCATCATTACGGGAAGGCTGA 58.885 47.619 0.00 0.00 0.00 4.26
698 699 2.705658 TCATCATTACGGGAAGGCTGAT 59.294 45.455 0.00 0.00 0.00 2.90
699 700 2.620251 TCATTACGGGAAGGCTGATG 57.380 50.000 0.00 0.00 0.00 3.07
700 701 1.837439 TCATTACGGGAAGGCTGATGT 59.163 47.619 0.00 0.00 0.00 3.06
701 702 3.035363 TCATTACGGGAAGGCTGATGTA 58.965 45.455 0.00 0.00 0.00 2.29
702 703 2.973694 TTACGGGAAGGCTGATGTAC 57.026 50.000 0.00 0.00 0.00 2.90
703 704 1.117150 TACGGGAAGGCTGATGTACC 58.883 55.000 0.00 0.00 0.00 3.34
704 705 0.617820 ACGGGAAGGCTGATGTACCT 60.618 55.000 0.00 0.00 38.14 3.08
706 707 1.760613 CGGGAAGGCTGATGTACCTTA 59.239 52.381 0.00 0.00 46.33 2.69
707 708 2.368875 CGGGAAGGCTGATGTACCTTAT 59.631 50.000 0.00 0.00 46.33 1.73
708 709 3.576982 CGGGAAGGCTGATGTACCTTATA 59.423 47.826 0.00 0.00 46.33 0.98
709 710 4.560919 CGGGAAGGCTGATGTACCTTATAC 60.561 50.000 0.00 0.00 46.33 1.47
718 719 4.825634 TGATGTACCTTATACTCCCGAGTG 59.174 45.833 7.63 0.00 42.52 3.51
732 733 4.258543 TCCCGAGTGGTATGAAAACAATC 58.741 43.478 0.00 0.00 34.77 2.67
774 775 0.944386 GTGTGCACGTGATCTGGTTT 59.056 50.000 22.23 0.00 0.00 3.27
897 912 4.855298 TCTTTATCCCCCAACTAACCAG 57.145 45.455 0.00 0.00 0.00 4.00
950 965 2.227388 CGAGAAAGCTTGCCAATCAACT 59.773 45.455 0.00 0.00 0.00 3.16
951 966 3.304928 CGAGAAAGCTTGCCAATCAACTT 60.305 43.478 0.00 0.00 31.83 2.66
963 978 4.557301 GCCAATCAACTTTTACGAAATCGG 59.443 41.667 7.81 0.00 44.95 4.18
1048 1063 2.181021 CACTAGACCGACCGCACC 59.819 66.667 0.00 0.00 0.00 5.01
1059 1074 2.669569 CCGCACCAGGTGAAGTGG 60.670 66.667 24.96 14.22 41.30 4.00
1082 1097 1.098050 CTTTGCGCTAAGGGCTCATT 58.902 50.000 21.70 0.00 42.10 2.57
1246 1273 2.367512 CCAGAGGGAAGGGGAGGG 60.368 72.222 0.00 0.00 35.59 4.30
1343 1377 0.469705 TCCCCAAGTGCTGCAACAAT 60.470 50.000 2.77 0.00 0.00 2.71
1690 1733 0.324943 GAGAAAGGCTGGTGGTGCTA 59.675 55.000 0.00 0.00 0.00 3.49
1753 1841 5.411361 TGATTGTGTGTGCCTACTCAATAAC 59.589 40.000 14.00 7.07 41.89 1.89
1803 1891 6.968131 TTGCATTTATACTCTCCGATATGC 57.032 37.500 0.00 0.00 38.04 3.14
1804 1892 6.036577 TGCATTTATACTCTCCGATATGCA 57.963 37.500 0.00 0.00 43.20 3.96
1805 1893 6.463360 TGCATTTATACTCTCCGATATGCAA 58.537 36.000 0.00 0.00 42.68 4.08
1808 1896 7.278646 GCATTTATACTCTCCGATATGCAATCA 59.721 37.037 0.00 0.00 37.62 2.57
1809 1897 9.154847 CATTTATACTCTCCGATATGCAATCAA 57.845 33.333 0.00 0.00 0.00 2.57
1810 1898 9.896645 ATTTATACTCTCCGATATGCAATCAAT 57.103 29.630 0.00 0.00 0.00 2.57
1811 1899 8.932945 TTATACTCTCCGATATGCAATCAATC 57.067 34.615 0.00 0.00 0.00 2.67
1812 1900 4.240888 ACTCTCCGATATGCAATCAATCG 58.759 43.478 13.84 13.84 41.59 3.34
1813 1901 4.240888 CTCTCCGATATGCAATCAATCGT 58.759 43.478 17.30 0.00 40.60 3.73
1814 1902 4.631131 TCTCCGATATGCAATCAATCGTT 58.369 39.130 17.30 0.00 40.60 3.85
1815 1903 5.056480 TCTCCGATATGCAATCAATCGTTT 58.944 37.500 17.30 0.00 40.60 3.60
1816 1904 6.220201 TCTCCGATATGCAATCAATCGTTTA 58.780 36.000 17.30 6.93 40.60 2.01
1817 1905 6.873605 TCTCCGATATGCAATCAATCGTTTAT 59.126 34.615 17.30 0.00 40.60 1.40
1818 1906 8.032451 TCTCCGATATGCAATCAATCGTTTATA 58.968 33.333 17.30 0.00 40.60 0.98
1819 1907 7.959733 TCCGATATGCAATCAATCGTTTATAC 58.040 34.615 17.30 0.00 40.60 1.47
1820 1908 7.817478 TCCGATATGCAATCAATCGTTTATACT 59.183 33.333 17.30 0.00 40.60 2.12
1857 1958 0.524392 TTTCGGCACAGCAAACAACG 60.524 50.000 0.00 0.00 0.00 4.10
1873 1974 2.633860 ACGGTCCGACGTACTCTTT 58.366 52.632 20.51 0.00 46.58 2.52
1874 1975 0.954452 ACGGTCCGACGTACTCTTTT 59.046 50.000 20.51 0.00 46.58 2.27
1875 1976 1.334054 CGGTCCGACGTACTCTTTTG 58.666 55.000 4.91 0.00 0.00 2.44
1876 1977 1.069022 CGGTCCGACGTACTCTTTTGA 60.069 52.381 4.91 0.00 0.00 2.69
1877 1978 5.443252 ACGGTCCGACGTACTCTTTTGAG 62.443 52.174 20.51 0.00 46.58 3.02
2155 2258 4.217118 GCCTTGATCATGAACAGTGAAAGT 59.783 41.667 10.07 0.00 0.00 2.66
2244 2348 3.941573 TCAGCACTTCAGCATCACATAA 58.058 40.909 0.00 0.00 36.85 1.90
2454 2570 4.686554 GTGTACCTCACATCAGAACTTCAC 59.313 45.833 0.00 0.00 45.51 3.18
2466 2582 5.192927 TCAGAACTTCACCATGAACACTTT 58.807 37.500 0.00 0.00 32.21 2.66
2524 2650 8.157813 CGATGAAAACATGCAACAAGAAATTAG 58.842 33.333 0.00 0.00 0.00 1.73
2540 2667 9.643693 CAAGAAATTAGCCAAACAACTCATATT 57.356 29.630 0.00 0.00 0.00 1.28
2541 2668 9.643693 AAGAAATTAGCCAAACAACTCATATTG 57.356 29.630 0.00 0.00 35.59 1.90
2601 2734 7.653311 ACTTAACTCCTCAAAATCAAATTGTGC 59.347 33.333 0.00 0.00 0.00 4.57
2616 2749 7.208777 TCAAATTGTGCACAAACAACTCATAT 58.791 30.769 34.06 12.47 42.56 1.78
2710 2843 8.709646 CAACACAACTAAAGTAGATACCACTTC 58.290 37.037 0.00 0.00 35.19 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.871238 GAGAGAAGGTTATACACAAGAAATACA 57.129 33.333 0.00 0.00 0.00 2.29
8 9 9.660180 GAAGAGAGAAGGTTATACACAAGAAAT 57.340 33.333 0.00 0.00 0.00 2.17
9 10 8.871125 AGAAGAGAGAAGGTTATACACAAGAAA 58.129 33.333 0.00 0.00 0.00 2.52
10 11 8.423906 AGAAGAGAGAAGGTTATACACAAGAA 57.576 34.615 0.00 0.00 0.00 2.52
11 12 9.702253 ATAGAAGAGAGAAGGTTATACACAAGA 57.298 33.333 0.00 0.00 0.00 3.02
22 23 9.549984 ACCTTAACTTTATAGAAGAGAGAAGGT 57.450 33.333 0.00 0.00 35.83 3.50
23 24 9.810545 CACCTTAACTTTATAGAAGAGAGAAGG 57.189 37.037 0.00 0.00 34.70 3.46
24 25 9.308318 GCACCTTAACTTTATAGAAGAGAGAAG 57.692 37.037 0.00 0.00 0.00 2.85
25 26 8.812972 TGCACCTTAACTTTATAGAAGAGAGAA 58.187 33.333 0.00 0.00 0.00 2.87
26 27 8.251721 GTGCACCTTAACTTTATAGAAGAGAGA 58.748 37.037 5.22 0.00 0.00 3.10
27 28 8.035394 TGTGCACCTTAACTTTATAGAAGAGAG 58.965 37.037 15.69 0.00 0.00 3.20
28 29 7.817962 GTGTGCACCTTAACTTTATAGAAGAGA 59.182 37.037 15.69 0.00 0.00 3.10
29 30 7.819900 AGTGTGCACCTTAACTTTATAGAAGAG 59.180 37.037 15.69 0.00 0.00 2.85
30 31 7.676947 AGTGTGCACCTTAACTTTATAGAAGA 58.323 34.615 15.69 0.00 0.00 2.87
31 32 7.907214 AGTGTGCACCTTAACTTTATAGAAG 57.093 36.000 15.69 0.00 0.00 2.85
32 33 8.564574 CAAAGTGTGCACCTTAACTTTATAGAA 58.435 33.333 24.37 0.00 40.05 2.10
33 34 8.094798 CAAAGTGTGCACCTTAACTTTATAGA 57.905 34.615 24.37 0.00 40.05 1.98
50 51 1.060713 CCGAGAGTACGCAAAGTGTG 58.939 55.000 0.00 0.00 0.00 3.82
51 52 0.956633 TCCGAGAGTACGCAAAGTGT 59.043 50.000 0.00 0.00 0.00 3.55
52 53 2.060326 TTCCGAGAGTACGCAAAGTG 57.940 50.000 0.00 0.00 0.00 3.16
53 54 2.806608 TTTCCGAGAGTACGCAAAGT 57.193 45.000 0.00 0.00 0.00 2.66
71 72 8.237811 TCTTTTGGAAGTAGCAGATTCTTTTT 57.762 30.769 0.00 0.00 34.41 1.94
72 73 7.522889 GCTCTTTTGGAAGTAGCAGATTCTTTT 60.523 37.037 0.00 0.00 36.70 2.27
73 74 6.072230 GCTCTTTTGGAAGTAGCAGATTCTTT 60.072 38.462 0.00 0.00 36.70 2.52
74 75 5.414144 GCTCTTTTGGAAGTAGCAGATTCTT 59.586 40.000 0.00 0.00 36.70 2.52
75 76 4.940654 GCTCTTTTGGAAGTAGCAGATTCT 59.059 41.667 0.00 0.00 36.70 2.40
76 77 4.697352 TGCTCTTTTGGAAGTAGCAGATTC 59.303 41.667 0.00 0.00 39.19 2.52
77 78 4.655963 TGCTCTTTTGGAAGTAGCAGATT 58.344 39.130 0.00 0.00 39.19 2.40
78 79 4.292186 TGCTCTTTTGGAAGTAGCAGAT 57.708 40.909 0.00 0.00 39.19 2.90
79 80 3.769739 TGCTCTTTTGGAAGTAGCAGA 57.230 42.857 0.00 0.00 39.19 4.26
80 81 5.382618 AAATGCTCTTTTGGAAGTAGCAG 57.617 39.130 14.07 0.00 43.05 4.24
81 82 5.789643 AAAATGCTCTTTTGGAAGTAGCA 57.210 34.783 12.29 12.29 43.47 3.49
82 83 6.450545 AGAAAAATGCTCTTTTGGAAGTAGC 58.549 36.000 1.70 0.00 36.96 3.58
85 86 9.481340 GAAATAGAAAAATGCTCTTTTGGAAGT 57.519 29.630 1.70 0.00 34.41 3.01
86 87 9.702494 AGAAATAGAAAAATGCTCTTTTGGAAG 57.298 29.630 1.70 0.00 0.00 3.46
87 88 9.480053 CAGAAATAGAAAAATGCTCTTTTGGAA 57.520 29.630 1.70 0.00 0.00 3.53
88 89 7.599998 GCAGAAATAGAAAAATGCTCTTTTGGA 59.400 33.333 1.70 0.00 0.00 3.53
89 90 7.385752 TGCAGAAATAGAAAAATGCTCTTTTGG 59.614 33.333 1.70 0.00 34.80 3.28
90 91 8.301730 TGCAGAAATAGAAAAATGCTCTTTTG 57.698 30.769 1.70 0.00 34.80 2.44
91 92 8.891671 TTGCAGAAATAGAAAAATGCTCTTTT 57.108 26.923 0.00 0.00 34.80 2.27
92 93 8.146412 ACTTGCAGAAATAGAAAAATGCTCTTT 58.854 29.630 0.00 0.00 34.80 2.52
93 94 7.664758 ACTTGCAGAAATAGAAAAATGCTCTT 58.335 30.769 0.00 0.00 34.80 2.85
94 95 7.224522 ACTTGCAGAAATAGAAAAATGCTCT 57.775 32.000 0.00 0.00 34.80 4.09
95 96 7.620806 GCAACTTGCAGAAATAGAAAAATGCTC 60.621 37.037 8.97 0.00 44.26 4.26
96 97 6.146673 GCAACTTGCAGAAATAGAAAAATGCT 59.853 34.615 8.97 0.00 44.26 3.79
97 98 6.301861 GCAACTTGCAGAAATAGAAAAATGC 58.698 36.000 8.97 0.00 44.26 3.56
98 99 6.144402 ACGCAACTTGCAGAAATAGAAAAATG 59.856 34.615 14.10 0.00 45.36 2.32
99 100 6.215845 ACGCAACTTGCAGAAATAGAAAAAT 58.784 32.000 14.10 0.00 45.36 1.82
100 101 5.587289 ACGCAACTTGCAGAAATAGAAAAA 58.413 33.333 14.10 0.00 45.36 1.94
101 102 5.181690 ACGCAACTTGCAGAAATAGAAAA 57.818 34.783 14.10 0.00 45.36 2.29
102 103 4.610456 CGACGCAACTTGCAGAAATAGAAA 60.610 41.667 14.10 0.00 45.36 2.52
103 104 3.120683 CGACGCAACTTGCAGAAATAGAA 60.121 43.478 14.10 0.00 45.36 2.10
104 105 2.411748 CGACGCAACTTGCAGAAATAGA 59.588 45.455 14.10 0.00 45.36 1.98
105 106 2.474526 CCGACGCAACTTGCAGAAATAG 60.475 50.000 14.10 0.00 45.36 1.73
106 107 1.463056 CCGACGCAACTTGCAGAAATA 59.537 47.619 14.10 0.00 45.36 1.40
107 108 0.238289 CCGACGCAACTTGCAGAAAT 59.762 50.000 14.10 0.00 45.36 2.17
108 109 0.812014 TCCGACGCAACTTGCAGAAA 60.812 50.000 14.10 0.00 45.36 2.52
109 110 0.812014 TTCCGACGCAACTTGCAGAA 60.812 50.000 14.10 7.74 45.36 3.02
110 111 1.227409 TTCCGACGCAACTTGCAGA 60.227 52.632 14.10 2.20 45.36 4.26
111 112 1.082756 GTTCCGACGCAACTTGCAG 60.083 57.895 14.10 8.89 45.36 4.41
112 113 1.369839 TTGTTCCGACGCAACTTGCA 61.370 50.000 14.10 0.00 45.36 4.08
113 114 0.928451 GTTGTTCCGACGCAACTTGC 60.928 55.000 2.93 3.44 41.05 4.01
114 115 0.653323 CGTTGTTCCGACGCAACTTG 60.653 55.000 2.93 0.00 41.80 3.16
115 116 0.806884 TCGTTGTTCCGACGCAACTT 60.807 50.000 2.93 0.00 41.80 2.66
116 117 1.213094 CTCGTTGTTCCGACGCAACT 61.213 55.000 2.93 0.00 41.80 3.16
117 118 1.200839 CTCGTTGTTCCGACGCAAC 59.799 57.895 0.00 0.00 40.63 4.17
118 119 0.937699 CTCTCGTTGTTCCGACGCAA 60.938 55.000 0.00 0.00 40.63 4.85
119 120 1.371267 CTCTCGTTGTTCCGACGCA 60.371 57.895 0.00 0.00 40.63 5.24
120 121 1.371389 ACTCTCGTTGTTCCGACGC 60.371 57.895 0.00 0.00 40.63 5.19
121 122 0.317603 ACACTCTCGTTGTTCCGACG 60.318 55.000 0.00 0.00 42.02 5.12
122 123 1.129326 CACACTCTCGTTGTTCCGAC 58.871 55.000 0.00 0.00 32.57 4.79
123 124 0.596600 GCACACTCTCGTTGTTCCGA 60.597 55.000 0.00 0.00 35.22 4.55
124 125 0.874175 TGCACACTCTCGTTGTTCCG 60.874 55.000 0.00 0.00 0.00 4.30
125 126 1.295792 TTGCACACTCTCGTTGTTCC 58.704 50.000 0.00 0.00 0.00 3.62
126 127 3.291585 CATTTGCACACTCTCGTTGTTC 58.708 45.455 0.00 0.00 0.00 3.18
127 128 2.033299 CCATTTGCACACTCTCGTTGTT 59.967 45.455 0.00 0.00 0.00 2.83
128 129 1.603802 CCATTTGCACACTCTCGTTGT 59.396 47.619 0.00 0.00 0.00 3.32
129 130 1.069022 CCCATTTGCACACTCTCGTTG 60.069 52.381 0.00 0.00 0.00 4.10
130 131 1.238439 CCCATTTGCACACTCTCGTT 58.762 50.000 0.00 0.00 0.00 3.85
131 132 1.237285 GCCCATTTGCACACTCTCGT 61.237 55.000 0.00 0.00 0.00 4.18
132 133 0.957395 AGCCCATTTGCACACTCTCG 60.957 55.000 0.00 0.00 0.00 4.04
133 134 0.524862 CAGCCCATTTGCACACTCTC 59.475 55.000 0.00 0.00 0.00 3.20
134 135 0.896940 CCAGCCCATTTGCACACTCT 60.897 55.000 0.00 0.00 0.00 3.24
135 136 1.588082 CCAGCCCATTTGCACACTC 59.412 57.895 0.00 0.00 0.00 3.51
136 137 1.909781 CCCAGCCCATTTGCACACT 60.910 57.895 0.00 0.00 0.00 3.55
137 138 2.658422 CCCAGCCCATTTGCACAC 59.342 61.111 0.00 0.00 0.00 3.82
138 139 2.604079 CCCCAGCCCATTTGCACA 60.604 61.111 0.00 0.00 0.00 4.57
139 140 1.891722 CTTCCCCAGCCCATTTGCAC 61.892 60.000 0.00 0.00 0.00 4.57
140 141 1.610086 CTTCCCCAGCCCATTTGCA 60.610 57.895 0.00 0.00 0.00 4.08
141 142 1.610379 ACTTCCCCAGCCCATTTGC 60.610 57.895 0.00 0.00 0.00 3.68
142 143 0.251742 TCACTTCCCCAGCCCATTTG 60.252 55.000 0.00 0.00 0.00 2.32
143 144 0.251787 GTCACTTCCCCAGCCCATTT 60.252 55.000 0.00 0.00 0.00 2.32
144 145 1.384191 GTCACTTCCCCAGCCCATT 59.616 57.895 0.00 0.00 0.00 3.16
145 146 2.971598 CGTCACTTCCCCAGCCCAT 61.972 63.158 0.00 0.00 0.00 4.00
146 147 3.636231 CGTCACTTCCCCAGCCCA 61.636 66.667 0.00 0.00 0.00 5.36
147 148 4.410400 CCGTCACTTCCCCAGCCC 62.410 72.222 0.00 0.00 0.00 5.19
148 149 4.410400 CCCGTCACTTCCCCAGCC 62.410 72.222 0.00 0.00 0.00 4.85
149 150 3.637273 ACCCGTCACTTCCCCAGC 61.637 66.667 0.00 0.00 0.00 4.85
150 151 2.347490 CACCCGTCACTTCCCCAG 59.653 66.667 0.00 0.00 0.00 4.45
151 152 3.246112 CCACCCGTCACTTCCCCA 61.246 66.667 0.00 0.00 0.00 4.96
152 153 4.717313 GCCACCCGTCACTTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
153 154 3.637273 AGCCACCCGTCACTTCCC 61.637 66.667 0.00 0.00 0.00 3.97
154 155 2.358737 CAGCCACCCGTCACTTCC 60.359 66.667 0.00 0.00 0.00 3.46
155 156 1.823169 TACCAGCCACCCGTCACTTC 61.823 60.000 0.00 0.00 0.00 3.01
156 157 1.827399 CTACCAGCCACCCGTCACTT 61.827 60.000 0.00 0.00 0.00 3.16
157 158 2.203728 TACCAGCCACCCGTCACT 60.204 61.111 0.00 0.00 0.00 3.41
158 159 2.227089 CTCTACCAGCCACCCGTCAC 62.227 65.000 0.00 0.00 0.00 3.67
159 160 1.982395 CTCTACCAGCCACCCGTCA 60.982 63.158 0.00 0.00 0.00 4.35
160 161 1.668101 CTCTCTACCAGCCACCCGTC 61.668 65.000 0.00 0.00 0.00 4.79
161 162 1.682684 CTCTCTACCAGCCACCCGT 60.683 63.158 0.00 0.00 0.00 5.28
162 163 0.970937 TTCTCTCTACCAGCCACCCG 60.971 60.000 0.00 0.00 0.00 5.28
163 164 0.827368 CTTCTCTCTACCAGCCACCC 59.173 60.000 0.00 0.00 0.00 4.61
164 165 1.562783 ACTTCTCTCTACCAGCCACC 58.437 55.000 0.00 0.00 0.00 4.61
165 166 3.622630 TCTACTTCTCTCTACCAGCCAC 58.377 50.000 0.00 0.00 0.00 5.01
166 167 4.017808 GTTCTACTTCTCTCTACCAGCCA 58.982 47.826 0.00 0.00 0.00 4.75
167 168 4.017808 TGTTCTACTTCTCTCTACCAGCC 58.982 47.826 0.00 0.00 0.00 4.85
168 169 5.646577 TTGTTCTACTTCTCTCTACCAGC 57.353 43.478 0.00 0.00 0.00 4.85
193 194 8.184192 CCGTAGACAAGCTTCAAAATAATGAAT 58.816 33.333 0.00 0.00 38.55 2.57
194 195 7.526608 CCGTAGACAAGCTTCAAAATAATGAA 58.473 34.615 0.00 0.00 37.70 2.57
195 196 6.403200 GCCGTAGACAAGCTTCAAAATAATGA 60.403 38.462 0.00 0.00 0.00 2.57
196 197 5.739161 GCCGTAGACAAGCTTCAAAATAATG 59.261 40.000 0.00 0.00 0.00 1.90
197 198 5.447279 CGCCGTAGACAAGCTTCAAAATAAT 60.447 40.000 0.00 0.00 0.00 1.28
198 199 4.142988 CGCCGTAGACAAGCTTCAAAATAA 60.143 41.667 0.00 0.00 0.00 1.40
199 200 3.369756 CGCCGTAGACAAGCTTCAAAATA 59.630 43.478 0.00 0.00 0.00 1.40
200 201 2.159627 CGCCGTAGACAAGCTTCAAAAT 59.840 45.455 0.00 0.00 0.00 1.82
201 202 1.529438 CGCCGTAGACAAGCTTCAAAA 59.471 47.619 0.00 0.00 0.00 2.44
202 203 1.144969 CGCCGTAGACAAGCTTCAAA 58.855 50.000 0.00 0.00 0.00 2.69
203 204 0.032952 ACGCCGTAGACAAGCTTCAA 59.967 50.000 0.00 0.00 0.00 2.69
204 205 0.388134 GACGCCGTAGACAAGCTTCA 60.388 55.000 0.00 0.00 0.00 3.02
205 206 1.403972 CGACGCCGTAGACAAGCTTC 61.404 60.000 0.00 0.00 0.00 3.86
206 207 1.443872 CGACGCCGTAGACAAGCTT 60.444 57.895 0.00 0.00 0.00 3.74
207 208 2.178521 CGACGCCGTAGACAAGCT 59.821 61.111 0.00 0.00 0.00 3.74
208 209 2.879462 CCGACGCCGTAGACAAGC 60.879 66.667 0.00 0.00 0.00 4.01
209 210 1.513586 GACCGACGCCGTAGACAAG 60.514 63.158 0.00 0.00 0.00 3.16
210 211 1.588824 ATGACCGACGCCGTAGACAA 61.589 55.000 0.00 0.00 0.00 3.18
211 212 2.042259 ATGACCGACGCCGTAGACA 61.042 57.895 0.00 0.00 0.00 3.41
212 213 1.585521 CATGACCGACGCCGTAGAC 60.586 63.158 0.00 0.00 0.00 2.59
213 214 2.767445 CCATGACCGACGCCGTAGA 61.767 63.158 0.00 0.00 0.00 2.59
214 215 2.278596 CCATGACCGACGCCGTAG 60.279 66.667 0.00 0.00 0.00 3.51
215 216 4.501714 GCCATGACCGACGCCGTA 62.502 66.667 0.00 0.00 0.00 4.02
234 235 3.842923 ATGACGCTCGGCTCTGGG 61.843 66.667 0.00 0.00 0.00 4.45
235 236 2.563050 TTCATGACGCTCGGCTCTGG 62.563 60.000 0.00 0.00 0.00 3.86
236 237 0.737367 TTTCATGACGCTCGGCTCTG 60.737 55.000 0.00 0.00 0.00 3.35
237 238 0.037326 TTTTCATGACGCTCGGCTCT 60.037 50.000 0.00 0.00 0.00 4.09
238 239 0.095417 GTTTTCATGACGCTCGGCTC 59.905 55.000 0.00 0.00 0.00 4.70
239 240 0.602638 TGTTTTCATGACGCTCGGCT 60.603 50.000 0.00 0.00 0.00 5.52
240 241 0.237235 TTGTTTTCATGACGCTCGGC 59.763 50.000 0.00 0.00 0.00 5.54
241 242 1.399727 GGTTGTTTTCATGACGCTCGG 60.400 52.381 0.00 0.00 0.00 4.63
242 243 1.399727 GGGTTGTTTTCATGACGCTCG 60.400 52.381 0.00 0.00 0.00 5.03
243 244 1.606668 TGGGTTGTTTTCATGACGCTC 59.393 47.619 0.00 0.00 0.00 5.03
244 245 1.686355 TGGGTTGTTTTCATGACGCT 58.314 45.000 0.00 0.00 0.00 5.07
245 246 2.723124 ATGGGTTGTTTTCATGACGC 57.277 45.000 0.00 0.00 0.00 5.19
246 247 6.865726 TCATAAAATGGGTTGTTTTCATGACG 59.134 34.615 0.00 0.00 31.71 4.35
247 248 8.600449 TTCATAAAATGGGTTGTTTTCATGAC 57.400 30.769 0.00 0.00 31.71 3.06
248 249 9.790344 ATTTCATAAAATGGGTTGTTTTCATGA 57.210 25.926 0.00 0.00 33.78 3.07
289 290 6.147000 GTCCTTTTCACAAAGTTCAGCAAAAA 59.853 34.615 0.00 0.00 38.22 1.94
290 291 5.637387 GTCCTTTTCACAAAGTTCAGCAAAA 59.363 36.000 0.00 0.00 38.22 2.44
291 292 5.167845 GTCCTTTTCACAAAGTTCAGCAAA 58.832 37.500 0.00 0.00 38.22 3.68
292 293 4.381505 GGTCCTTTTCACAAAGTTCAGCAA 60.382 41.667 0.00 0.00 38.22 3.91
293 294 3.130340 GGTCCTTTTCACAAAGTTCAGCA 59.870 43.478 0.00 0.00 38.22 4.41
294 295 3.130340 TGGTCCTTTTCACAAAGTTCAGC 59.870 43.478 0.00 0.00 38.22 4.26
295 296 4.981806 TGGTCCTTTTCACAAAGTTCAG 57.018 40.909 0.00 0.00 38.22 3.02
296 297 5.930837 AATGGTCCTTTTCACAAAGTTCA 57.069 34.783 0.00 0.00 38.22 3.18
297 298 7.609760 AAAAATGGTCCTTTTCACAAAGTTC 57.390 32.000 3.35 0.00 38.22 3.01
298 299 9.325198 GATAAAAATGGTCCTTTTCACAAAGTT 57.675 29.630 3.35 0.00 38.22 2.66
299 300 7.651704 CGATAAAAATGGTCCTTTTCACAAAGT 59.348 33.333 3.35 0.00 38.22 2.66
300 301 7.865385 TCGATAAAAATGGTCCTTTTCACAAAG 59.135 33.333 3.35 0.00 39.45 2.77
301 302 7.717568 TCGATAAAAATGGTCCTTTTCACAAA 58.282 30.769 3.35 0.00 0.00 2.83
302 303 7.278461 TCGATAAAAATGGTCCTTTTCACAA 57.722 32.000 3.35 0.00 0.00 3.33
303 304 6.885952 TCGATAAAAATGGTCCTTTTCACA 57.114 33.333 3.35 0.00 0.00 3.58
304 305 8.757164 AAATCGATAAAAATGGTCCTTTTCAC 57.243 30.769 0.00 0.00 0.00 3.18
305 306 9.418045 GAAAATCGATAAAAATGGTCCTTTTCA 57.582 29.630 0.00 0.00 32.16 2.69
306 307 9.418045 TGAAAATCGATAAAAATGGTCCTTTTC 57.582 29.630 0.00 1.84 32.37 2.29
307 308 9.423061 CTGAAAATCGATAAAAATGGTCCTTTT 57.577 29.630 0.00 0.00 0.00 2.27
308 309 8.802267 TCTGAAAATCGATAAAAATGGTCCTTT 58.198 29.630 0.00 0.00 0.00 3.11
309 310 8.348285 TCTGAAAATCGATAAAAATGGTCCTT 57.652 30.769 0.00 0.00 0.00 3.36
310 311 7.938140 TCTGAAAATCGATAAAAATGGTCCT 57.062 32.000 0.00 0.00 0.00 3.85
311 312 8.860128 GTTTCTGAAAATCGATAAAAATGGTCC 58.140 33.333 4.09 0.00 0.00 4.46
312 313 9.626045 AGTTTCTGAAAATCGATAAAAATGGTC 57.374 29.630 4.09 0.00 0.00 4.02
313 314 9.981114 AAGTTTCTGAAAATCGATAAAAATGGT 57.019 25.926 4.09 0.00 0.00 3.55
322 323 9.838339 ACCATAGATAAGTTTCTGAAAATCGAT 57.162 29.630 4.09 4.17 0.00 3.59
323 324 9.314321 GACCATAGATAAGTTTCTGAAAATCGA 57.686 33.333 4.09 2.02 0.00 3.59
324 325 9.319143 AGACCATAGATAAGTTTCTGAAAATCG 57.681 33.333 4.09 0.00 0.00 3.34
326 327 9.401058 CCAGACCATAGATAAGTTTCTGAAAAT 57.599 33.333 4.09 0.03 32.42 1.82
327 328 7.336931 GCCAGACCATAGATAAGTTTCTGAAAA 59.663 37.037 4.09 0.00 32.42 2.29
328 329 6.823689 GCCAGACCATAGATAAGTTTCTGAAA 59.176 38.462 0.00 0.00 32.42 2.69
329 330 6.070251 TGCCAGACCATAGATAAGTTTCTGAA 60.070 38.462 0.00 0.00 32.42 3.02
330 331 5.425217 TGCCAGACCATAGATAAGTTTCTGA 59.575 40.000 0.00 0.00 32.42 3.27
331 332 5.674525 TGCCAGACCATAGATAAGTTTCTG 58.325 41.667 0.00 0.00 0.00 3.02
332 333 5.426833 ACTGCCAGACCATAGATAAGTTTCT 59.573 40.000 0.00 0.00 0.00 2.52
333 334 5.525378 CACTGCCAGACCATAGATAAGTTTC 59.475 44.000 0.00 0.00 0.00 2.78
334 335 5.045578 ACACTGCCAGACCATAGATAAGTTT 60.046 40.000 0.00 0.00 0.00 2.66
335 336 4.471386 ACACTGCCAGACCATAGATAAGTT 59.529 41.667 0.00 0.00 0.00 2.66
336 337 4.033709 ACACTGCCAGACCATAGATAAGT 58.966 43.478 0.00 0.00 0.00 2.24
337 338 4.100035 TCACACTGCCAGACCATAGATAAG 59.900 45.833 0.00 0.00 0.00 1.73
338 339 4.030216 TCACACTGCCAGACCATAGATAA 58.970 43.478 0.00 0.00 0.00 1.75
339 340 3.642141 TCACACTGCCAGACCATAGATA 58.358 45.455 0.00 0.00 0.00 1.98
340 341 2.470990 TCACACTGCCAGACCATAGAT 58.529 47.619 0.00 0.00 0.00 1.98
341 342 1.937191 TCACACTGCCAGACCATAGA 58.063 50.000 0.00 0.00 0.00 1.98
342 343 2.768253 TTCACACTGCCAGACCATAG 57.232 50.000 0.00 0.00 0.00 2.23
343 344 2.840038 AGATTCACACTGCCAGACCATA 59.160 45.455 0.00 0.00 0.00 2.74
344 345 1.632409 AGATTCACACTGCCAGACCAT 59.368 47.619 0.00 0.00 0.00 3.55
345 346 1.059098 AGATTCACACTGCCAGACCA 58.941 50.000 0.00 0.00 0.00 4.02
346 347 1.808945 CAAGATTCACACTGCCAGACC 59.191 52.381 0.00 0.00 0.00 3.85
347 348 1.808945 CCAAGATTCACACTGCCAGAC 59.191 52.381 0.00 0.00 0.00 3.51
348 349 1.271543 CCCAAGATTCACACTGCCAGA 60.272 52.381 0.00 0.00 0.00 3.86
349 350 1.171308 CCCAAGATTCACACTGCCAG 58.829 55.000 0.00 0.00 0.00 4.85
350 351 0.251297 CCCCAAGATTCACACTGCCA 60.251 55.000 0.00 0.00 0.00 4.92
351 352 1.598701 GCCCCAAGATTCACACTGCC 61.599 60.000 0.00 0.00 0.00 4.85
352 353 1.885871 GCCCCAAGATTCACACTGC 59.114 57.895 0.00 0.00 0.00 4.40
353 354 1.926511 GCGCCCCAAGATTCACACTG 61.927 60.000 0.00 0.00 0.00 3.66
354 355 1.675641 GCGCCCCAAGATTCACACT 60.676 57.895 0.00 0.00 0.00 3.55
355 356 2.700773 GGCGCCCCAAGATTCACAC 61.701 63.158 18.11 0.00 0.00 3.82
356 357 2.361104 GGCGCCCCAAGATTCACA 60.361 61.111 18.11 0.00 0.00 3.58
357 358 3.508840 CGGCGCCCCAAGATTCAC 61.509 66.667 23.46 0.00 0.00 3.18
358 359 3.680620 CTCGGCGCCCCAAGATTCA 62.681 63.158 23.46 0.00 0.00 2.57
359 360 2.897350 CTCGGCGCCCCAAGATTC 60.897 66.667 23.46 0.00 0.00 2.52
360 361 3.268103 AACTCGGCGCCCCAAGATT 62.268 57.895 23.46 3.15 0.00 2.40
361 362 3.682292 GAACTCGGCGCCCCAAGAT 62.682 63.158 23.46 10.81 0.00 2.40
362 363 4.388499 GAACTCGGCGCCCCAAGA 62.388 66.667 23.46 11.55 0.00 3.02
366 367 2.911332 TATTTCGAACTCGGCGCCCC 62.911 60.000 23.46 4.04 40.29 5.80
367 368 1.519898 TATTTCGAACTCGGCGCCC 60.520 57.895 23.46 4.99 40.29 6.13
368 369 0.804933 AGTATTTCGAACTCGGCGCC 60.805 55.000 19.07 19.07 40.29 6.53
369 370 1.831343 TAGTATTTCGAACTCGGCGC 58.169 50.000 0.00 0.00 40.29 6.53
370 371 2.153247 GCATAGTATTTCGAACTCGGCG 59.847 50.000 0.00 0.00 40.29 6.46
371 372 3.381949 AGCATAGTATTTCGAACTCGGC 58.618 45.455 0.00 0.44 40.29 5.54
372 373 5.968387 AAAGCATAGTATTTCGAACTCGG 57.032 39.130 0.00 0.00 40.29 4.63
395 396 2.043992 TCCGGGTCTGTCTCTGAAAAA 58.956 47.619 0.00 0.00 0.00 1.94
396 397 1.343465 GTCCGGGTCTGTCTCTGAAAA 59.657 52.381 0.00 0.00 0.00 2.29
397 398 0.966920 GTCCGGGTCTGTCTCTGAAA 59.033 55.000 0.00 0.00 0.00 2.69
398 399 0.898789 GGTCCGGGTCTGTCTCTGAA 60.899 60.000 0.00 0.00 0.00 3.02
399 400 1.304217 GGTCCGGGTCTGTCTCTGA 60.304 63.158 0.00 0.00 0.00 3.27
400 401 1.185618 TTGGTCCGGGTCTGTCTCTG 61.186 60.000 0.00 0.00 0.00 3.35
401 402 0.252284 ATTGGTCCGGGTCTGTCTCT 60.252 55.000 0.00 0.00 0.00 3.10
402 403 0.108138 CATTGGTCCGGGTCTGTCTC 60.108 60.000 0.00 0.00 0.00 3.36
403 404 0.544357 TCATTGGTCCGGGTCTGTCT 60.544 55.000 0.00 0.00 0.00 3.41
404 405 0.108138 CTCATTGGTCCGGGTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
405 406 0.544357 TCTCATTGGTCCGGGTCTGT 60.544 55.000 0.00 0.00 0.00 3.41
406 407 0.833287 ATCTCATTGGTCCGGGTCTG 59.167 55.000 0.00 0.00 0.00 3.51
407 408 1.210478 CAATCTCATTGGTCCGGGTCT 59.790 52.381 0.00 0.00 36.63 3.85
408 409 1.065418 ACAATCTCATTGGTCCGGGTC 60.065 52.381 0.00 0.00 44.42 4.46
409 410 0.991920 ACAATCTCATTGGTCCGGGT 59.008 50.000 0.00 0.00 44.42 5.28
410 411 1.668419 GACAATCTCATTGGTCCGGG 58.332 55.000 0.00 0.00 44.42 5.73
411 412 1.210478 AGGACAATCTCATTGGTCCGG 59.790 52.381 0.00 0.00 44.42 5.14
412 413 2.698855 AGGACAATCTCATTGGTCCG 57.301 50.000 0.00 0.00 44.42 4.79
413 414 4.878397 CACTAAGGACAATCTCATTGGTCC 59.122 45.833 0.00 0.00 44.42 4.46
414 415 4.878397 CCACTAAGGACAATCTCATTGGTC 59.122 45.833 1.50 0.00 44.42 4.02
415 416 4.289672 ACCACTAAGGACAATCTCATTGGT 59.710 41.667 1.50 0.00 41.95 3.67
416 417 4.848357 ACCACTAAGGACAATCTCATTGG 58.152 43.478 1.50 0.00 41.95 3.16
417 418 6.644347 ACTACCACTAAGGACAATCTCATTG 58.356 40.000 0.00 0.00 42.72 2.82
418 419 6.875972 ACTACCACTAAGGACAATCTCATT 57.124 37.500 0.00 0.00 41.22 2.57
419 420 7.785028 TGATACTACCACTAAGGACAATCTCAT 59.215 37.037 0.00 0.00 41.22 2.90
420 421 7.123383 TGATACTACCACTAAGGACAATCTCA 58.877 38.462 0.00 0.00 41.22 3.27
421 422 7.584122 TGATACTACCACTAAGGACAATCTC 57.416 40.000 0.00 0.00 41.22 2.75
422 423 9.656323 TTATGATACTACCACTAAGGACAATCT 57.344 33.333 0.00 0.00 41.22 2.40
423 424 9.915629 CTTATGATACTACCACTAAGGACAATC 57.084 37.037 0.00 0.00 41.22 2.67
424 425 9.435570 ACTTATGATACTACCACTAAGGACAAT 57.564 33.333 0.00 0.00 41.22 2.71
425 426 8.834004 ACTTATGATACTACCACTAAGGACAA 57.166 34.615 0.00 0.00 41.22 3.18
426 427 8.834004 AACTTATGATACTACCACTAAGGACA 57.166 34.615 0.00 0.00 41.22 4.02
465 466 9.913310 TGGAGGTAATATCAAACACAAATATCA 57.087 29.630 0.00 0.00 0.00 2.15
467 468 9.693739 TGTGGAGGTAATATCAAACACAAATAT 57.306 29.630 0.00 0.00 35.00 1.28
468 469 9.521841 TTGTGGAGGTAATATCAAACACAAATA 57.478 29.630 0.00 0.00 42.45 1.40
469 470 8.415950 TTGTGGAGGTAATATCAAACACAAAT 57.584 30.769 0.00 0.00 42.45 2.32
470 471 7.825331 TTGTGGAGGTAATATCAAACACAAA 57.175 32.000 0.00 0.00 42.45 2.83
472 473 6.127758 GCATTGTGGAGGTAATATCAAACACA 60.128 38.462 0.00 0.00 36.00 3.72
473 474 6.127758 TGCATTGTGGAGGTAATATCAAACAC 60.128 38.462 0.00 0.00 0.00 3.32
474 475 5.948758 TGCATTGTGGAGGTAATATCAAACA 59.051 36.000 0.00 0.00 0.00 2.83
475 476 6.449635 TGCATTGTGGAGGTAATATCAAAC 57.550 37.500 0.00 0.00 0.00 2.93
476 477 7.777440 TGTATGCATTGTGGAGGTAATATCAAA 59.223 33.333 3.54 0.00 0.00 2.69
477 478 7.286313 TGTATGCATTGTGGAGGTAATATCAA 58.714 34.615 3.54 0.00 0.00 2.57
478 479 6.836242 TGTATGCATTGTGGAGGTAATATCA 58.164 36.000 3.54 0.00 0.00 2.15
479 480 6.936900 ACTGTATGCATTGTGGAGGTAATATC 59.063 38.462 3.54 0.00 0.00 1.63
480 481 6.841601 ACTGTATGCATTGTGGAGGTAATAT 58.158 36.000 3.54 0.00 0.00 1.28
481 482 6.247229 ACTGTATGCATTGTGGAGGTAATA 57.753 37.500 3.54 0.00 0.00 0.98
482 483 5.116084 ACTGTATGCATTGTGGAGGTAAT 57.884 39.130 3.54 0.00 0.00 1.89
483 484 4.568072 ACTGTATGCATTGTGGAGGTAA 57.432 40.909 3.54 0.00 0.00 2.85
484 485 4.714802 ACTACTGTATGCATTGTGGAGGTA 59.285 41.667 3.54 0.00 0.00 3.08
485 486 3.519510 ACTACTGTATGCATTGTGGAGGT 59.480 43.478 3.54 0.00 0.00 3.85
486 487 4.142609 ACTACTGTATGCATTGTGGAGG 57.857 45.455 3.54 0.00 0.00 4.30
487 488 7.212976 AGAATACTACTGTATGCATTGTGGAG 58.787 38.462 3.54 3.84 39.16 3.86
488 489 7.124573 AGAATACTACTGTATGCATTGTGGA 57.875 36.000 3.54 0.00 39.16 4.02
489 490 8.360390 TCTAGAATACTACTGTATGCATTGTGG 58.640 37.037 3.54 6.74 39.16 4.17
490 491 9.920133 ATCTAGAATACTACTGTATGCATTGTG 57.080 33.333 3.54 0.00 39.16 3.33
491 492 9.920133 CATCTAGAATACTACTGTATGCATTGT 57.080 33.333 3.54 4.70 39.16 2.71
494 495 9.527157 AGTCATCTAGAATACTACTGTATGCAT 57.473 33.333 3.79 3.79 39.16 3.96
495 496 8.926092 AGTCATCTAGAATACTACTGTATGCA 57.074 34.615 8.24 0.00 39.16 3.96
527 528 9.636789 ATGCTACCATGTATCATGCATAATAAT 57.363 29.630 0.00 0.00 37.81 1.28
529 530 9.768662 CTATGCTACCATGTATCATGCATAATA 57.231 33.333 0.00 0.00 40.06 0.98
530 531 8.270030 ACTATGCTACCATGTATCATGCATAAT 58.730 33.333 0.00 0.00 40.06 1.28
531 532 7.623630 ACTATGCTACCATGTATCATGCATAA 58.376 34.615 0.00 0.00 40.06 1.90
532 533 7.186570 ACTATGCTACCATGTATCATGCATA 57.813 36.000 0.00 0.00 39.79 3.14
533 534 6.058553 ACTATGCTACCATGTATCATGCAT 57.941 37.500 0.00 0.00 41.60 3.96
534 535 5.488262 ACTATGCTACCATGTATCATGCA 57.512 39.130 4.43 0.00 32.85 3.96
535 536 8.498054 AAATACTATGCTACCATGTATCATGC 57.502 34.615 4.43 0.00 30.99 4.06
598 599 9.529823 AGAGGGAGTCGTATATGTCATATAAAA 57.470 33.333 13.10 3.48 30.07 1.52
599 600 9.529823 AAGAGGGAGTCGTATATGTCATATAAA 57.470 33.333 13.10 3.78 30.07 1.40
600 601 8.957466 CAAGAGGGAGTCGTATATGTCATATAA 58.043 37.037 13.10 0.00 30.07 0.98
601 602 8.107729 ACAAGAGGGAGTCGTATATGTCATATA 58.892 37.037 8.26 8.26 0.00 0.86
602 603 6.948886 ACAAGAGGGAGTCGTATATGTCATAT 59.051 38.462 10.20 10.20 0.00 1.78
603 604 6.304624 ACAAGAGGGAGTCGTATATGTCATA 58.695 40.000 0.00 0.00 0.00 2.15
604 605 5.141182 ACAAGAGGGAGTCGTATATGTCAT 58.859 41.667 0.00 0.00 0.00 3.06
605 606 4.533815 ACAAGAGGGAGTCGTATATGTCA 58.466 43.478 0.00 0.00 0.00 3.58
606 607 6.630444 TTACAAGAGGGAGTCGTATATGTC 57.370 41.667 0.00 0.00 0.00 3.06
607 608 6.606395 AGTTTACAAGAGGGAGTCGTATATGT 59.394 38.462 0.00 0.00 0.00 2.29
608 609 7.040473 AGTTTACAAGAGGGAGTCGTATATG 57.960 40.000 0.00 0.00 0.00 1.78
609 610 8.757982 TTAGTTTACAAGAGGGAGTCGTATAT 57.242 34.615 0.00 0.00 0.00 0.86
610 611 8.757982 ATTAGTTTACAAGAGGGAGTCGTATA 57.242 34.615 0.00 0.00 0.00 1.47
611 612 7.657023 ATTAGTTTACAAGAGGGAGTCGTAT 57.343 36.000 0.00 0.00 0.00 3.06
612 613 8.757982 ATATTAGTTTACAAGAGGGAGTCGTA 57.242 34.615 0.00 0.00 0.00 3.43
613 614 5.997384 ATTAGTTTACAAGAGGGAGTCGT 57.003 39.130 0.00 0.00 0.00 4.34
641 642 9.751542 CCTTCGTAAACTAATGATCTAGATGTT 57.248 33.333 10.74 4.77 0.00 2.71
642 643 8.361139 CCCTTCGTAAACTAATGATCTAGATGT 58.639 37.037 10.74 0.00 0.00 3.06
643 644 8.577296 TCCCTTCGTAAACTAATGATCTAGATG 58.423 37.037 10.74 0.00 0.00 2.90
644 645 8.707796 TCCCTTCGTAAACTAATGATCTAGAT 57.292 34.615 4.47 4.47 0.00 1.98
645 646 7.778853 ACTCCCTTCGTAAACTAATGATCTAGA 59.221 37.037 0.00 0.00 0.00 2.43
646 647 7.942990 ACTCCCTTCGTAAACTAATGATCTAG 58.057 38.462 0.00 0.00 0.00 2.43
647 648 7.014038 GGACTCCCTTCGTAAACTAATGATCTA 59.986 40.741 0.00 0.00 0.00 1.98
648 649 6.183360 GGACTCCCTTCGTAAACTAATGATCT 60.183 42.308 0.00 0.00 0.00 2.75
649 650 5.984323 GGACTCCCTTCGTAAACTAATGATC 59.016 44.000 0.00 0.00 0.00 2.92
650 651 5.661759 AGGACTCCCTTCGTAAACTAATGAT 59.338 40.000 0.00 0.00 40.78 2.45
651 652 5.021458 AGGACTCCCTTCGTAAACTAATGA 58.979 41.667 0.00 0.00 40.78 2.57
652 653 5.340439 AGGACTCCCTTCGTAAACTAATG 57.660 43.478 0.00 0.00 40.78 1.90
653 654 6.193504 ACTAGGACTCCCTTCGTAAACTAAT 58.806 40.000 0.00 0.00 40.78 1.73
654 655 5.574188 ACTAGGACTCCCTTCGTAAACTAA 58.426 41.667 0.00 0.00 40.78 2.24
655 656 5.184892 ACTAGGACTCCCTTCGTAAACTA 57.815 43.478 0.00 0.00 40.78 2.24
656 657 4.015764 GACTAGGACTCCCTTCGTAAACT 58.984 47.826 0.00 0.00 40.78 2.66
657 658 3.760684 TGACTAGGACTCCCTTCGTAAAC 59.239 47.826 0.00 0.00 40.78 2.01
658 659 4.038271 TGACTAGGACTCCCTTCGTAAA 57.962 45.455 0.00 0.00 40.78 2.01
659 660 3.726557 TGACTAGGACTCCCTTCGTAA 57.273 47.619 0.00 0.00 40.78 3.18
660 661 3.201487 TGATGACTAGGACTCCCTTCGTA 59.799 47.826 0.00 0.00 40.78 3.43
661 662 2.025226 TGATGACTAGGACTCCCTTCGT 60.025 50.000 0.00 0.00 40.78 3.85
662 663 2.656002 TGATGACTAGGACTCCCTTCG 58.344 52.381 0.00 0.00 40.78 3.79
663 664 5.278561 CGTAATGATGACTAGGACTCCCTTC 60.279 48.000 0.00 0.00 40.78 3.46
664 665 4.585162 CGTAATGATGACTAGGACTCCCTT 59.415 45.833 0.00 0.00 40.78 3.95
665 666 4.145807 CGTAATGATGACTAGGACTCCCT 58.854 47.826 0.00 0.00 46.62 4.20
666 667 3.256136 CCGTAATGATGACTAGGACTCCC 59.744 52.174 0.00 0.00 0.00 4.30
667 668 3.256136 CCCGTAATGATGACTAGGACTCC 59.744 52.174 0.00 0.00 0.00 3.85
668 669 4.142790 TCCCGTAATGATGACTAGGACTC 58.857 47.826 0.00 0.00 0.00 3.36
669 670 4.180377 TCCCGTAATGATGACTAGGACT 57.820 45.455 0.00 0.00 0.00 3.85
670 671 4.262079 CCTTCCCGTAATGATGACTAGGAC 60.262 50.000 0.00 0.00 0.00 3.85
671 672 3.895656 CCTTCCCGTAATGATGACTAGGA 59.104 47.826 0.00 0.00 0.00 2.94
672 673 3.555168 GCCTTCCCGTAATGATGACTAGG 60.555 52.174 0.00 0.00 0.00 3.02
673 674 3.322254 AGCCTTCCCGTAATGATGACTAG 59.678 47.826 0.00 0.00 0.00 2.57
674 675 3.069586 CAGCCTTCCCGTAATGATGACTA 59.930 47.826 0.00 0.00 0.00 2.59
675 676 2.119495 AGCCTTCCCGTAATGATGACT 58.881 47.619 0.00 0.00 0.00 3.41
676 677 2.158957 TCAGCCTTCCCGTAATGATGAC 60.159 50.000 0.00 0.00 0.00 3.06
677 678 2.115427 TCAGCCTTCCCGTAATGATGA 58.885 47.619 0.00 0.00 0.00 2.92
678 679 2.620251 TCAGCCTTCCCGTAATGATG 57.380 50.000 0.00 0.00 0.00 3.07
679 680 2.439507 ACATCAGCCTTCCCGTAATGAT 59.560 45.455 0.00 0.00 0.00 2.45
680 681 1.837439 ACATCAGCCTTCCCGTAATGA 59.163 47.619 0.00 0.00 0.00 2.57
681 682 2.332063 ACATCAGCCTTCCCGTAATG 57.668 50.000 0.00 0.00 0.00 1.90
682 683 2.104281 GGTACATCAGCCTTCCCGTAAT 59.896 50.000 0.00 0.00 0.00 1.89
683 684 1.483415 GGTACATCAGCCTTCCCGTAA 59.517 52.381 0.00 0.00 0.00 3.18
684 685 1.117150 GGTACATCAGCCTTCCCGTA 58.883 55.000 0.00 0.00 0.00 4.02
685 686 0.617820 AGGTACATCAGCCTTCCCGT 60.618 55.000 0.00 0.00 0.00 5.28
686 687 0.541863 AAGGTACATCAGCCTTCCCG 59.458 55.000 0.00 0.00 40.81 5.14
687 688 4.593634 AGTATAAGGTACATCAGCCTTCCC 59.406 45.833 0.00 0.00 43.40 3.97
688 689 5.279556 GGAGTATAAGGTACATCAGCCTTCC 60.280 48.000 0.00 0.00 43.40 3.46
689 690 5.279556 GGGAGTATAAGGTACATCAGCCTTC 60.280 48.000 0.00 0.00 43.40 3.46
690 691 4.593634 GGGAGTATAAGGTACATCAGCCTT 59.406 45.833 0.00 0.00 45.95 4.35
691 692 4.161102 GGGAGTATAAGGTACATCAGCCT 58.839 47.826 0.00 0.00 36.51 4.58
692 693 3.056749 CGGGAGTATAAGGTACATCAGCC 60.057 52.174 0.00 0.00 0.00 4.85
693 694 3.825014 TCGGGAGTATAAGGTACATCAGC 59.175 47.826 0.00 0.00 0.00 4.26
694 695 5.048643 CACTCGGGAGTATAAGGTACATCAG 60.049 48.000 0.21 0.00 40.20 2.90
695 696 4.825634 CACTCGGGAGTATAAGGTACATCA 59.174 45.833 0.21 0.00 40.20 3.07
696 697 4.217983 CCACTCGGGAGTATAAGGTACATC 59.782 50.000 0.21 0.00 40.20 3.06
697 698 4.150359 CCACTCGGGAGTATAAGGTACAT 58.850 47.826 0.21 0.00 40.20 2.29
698 699 3.053395 ACCACTCGGGAGTATAAGGTACA 60.053 47.826 6.75 0.00 40.20 2.90
699 700 3.560105 ACCACTCGGGAGTATAAGGTAC 58.440 50.000 6.75 0.00 40.20 3.34
700 701 3.959495 ACCACTCGGGAGTATAAGGTA 57.041 47.619 6.75 0.00 40.20 3.08
701 702 2.842645 ACCACTCGGGAGTATAAGGT 57.157 50.000 0.21 2.11 40.20 3.50
702 703 4.404640 TCATACCACTCGGGAGTATAAGG 58.595 47.826 0.21 1.48 40.20 2.69
703 704 6.401047 TTTCATACCACTCGGGAGTATAAG 57.599 41.667 0.21 0.00 40.20 1.73
704 705 6.154877 TGTTTTCATACCACTCGGGAGTATAA 59.845 38.462 0.21 0.00 40.20 0.98
705 706 5.657745 TGTTTTCATACCACTCGGGAGTATA 59.342 40.000 0.21 0.00 40.20 1.47
706 707 4.468510 TGTTTTCATACCACTCGGGAGTAT 59.531 41.667 0.21 0.00 40.20 2.12
707 708 3.833650 TGTTTTCATACCACTCGGGAGTA 59.166 43.478 0.21 0.00 40.20 2.59
708 709 2.635915 TGTTTTCATACCACTCGGGAGT 59.364 45.455 0.00 0.00 43.61 3.85
709 710 3.328382 TGTTTTCATACCACTCGGGAG 57.672 47.619 0.00 0.00 41.15 4.30
718 719 5.446473 CGACAGCAGAGATTGTTTTCATACC 60.446 44.000 0.00 0.00 0.00 2.73
732 733 0.037326 TTTAGGCCACGACAGCAGAG 60.037 55.000 5.01 0.00 0.00 3.35
774 775 1.228521 CACCACCCATGTCCAGCAA 60.229 57.895 0.00 0.00 0.00 3.91
830 844 2.946990 GGAAACTTGGACTCGTTTTCCA 59.053 45.455 6.54 0.00 41.64 3.53
865 879 5.751586 TGGGGGATAAAGATGTTTGACTAC 58.248 41.667 0.00 0.00 0.00 2.73
897 912 3.511699 TGCGATCGCTATGTCCATTATC 58.488 45.455 37.01 7.13 42.51 1.75
933 948 4.744631 CGTAAAAGTTGATTGGCAAGCTTT 59.255 37.500 17.21 14.47 38.39 3.51
935 950 3.568007 TCGTAAAAGTTGATTGGCAAGCT 59.432 39.130 17.21 3.99 37.12 3.74
950 965 2.007360 TAGGCGCCGATTTCGTAAAA 57.993 45.000 23.20 0.00 37.74 1.52
951 966 2.228138 ATAGGCGCCGATTTCGTAAA 57.772 45.000 23.20 0.00 37.74 2.01
963 978 3.608241 CGAGCAGCTCTATATATAGGCGC 60.608 52.174 20.39 23.12 34.15 6.53
1048 1063 1.242076 CAAAGCTCCCACTTCACCTG 58.758 55.000 0.00 0.00 0.00 4.00
1077 1092 3.943381 TGCTCTTCATGGTTGCTAATGAG 59.057 43.478 0.00 0.00 34.43 2.90
1082 1097 1.350684 TGGTGCTCTTCATGGTTGCTA 59.649 47.619 0.00 0.00 0.00 3.49
1246 1273 4.093115 TCACTCATAAGACGAGACGAGAAC 59.907 45.833 0.00 0.00 34.47 3.01
1343 1377 2.592993 CCCCGAGAAGGACCTGCAA 61.593 63.158 1.14 0.00 45.00 4.08
1623 1665 7.242079 AGACACGACGATAGCATTATACATAC 58.758 38.462 0.00 0.00 42.67 2.39
1632 1674 1.476891 ACCAAGACACGACGATAGCAT 59.523 47.619 0.00 0.00 42.67 3.79
1690 1733 2.824341 CGGAGGTAGGTGAACAAGTACT 59.176 50.000 0.00 0.00 0.00 2.73
1759 1847 5.122396 GCAATATTCGACAAGAGAACTGGTT 59.878 40.000 0.00 0.00 29.28 3.67
1760 1848 4.631813 GCAATATTCGACAAGAGAACTGGT 59.368 41.667 0.00 0.00 32.23 4.00
1761 1849 4.631377 TGCAATATTCGACAAGAGAACTGG 59.369 41.667 0.00 0.00 0.00 4.00
1762 1850 5.784750 TGCAATATTCGACAAGAGAACTG 57.215 39.130 0.00 0.00 0.00 3.16
1763 1851 6.992063 AATGCAATATTCGACAAGAGAACT 57.008 33.333 0.00 0.00 0.00 3.01
1766 1854 9.764363 AGTATAAATGCAATATTCGACAAGAGA 57.236 29.630 0.00 0.00 0.00 3.10
1768 1856 9.764363 AGAGTATAAATGCAATATTCGACAAGA 57.236 29.630 0.00 0.00 0.00 3.02
1770 1858 8.988934 GGAGAGTATAAATGCAATATTCGACAA 58.011 33.333 0.00 0.00 0.00 3.18
1771 1859 7.328493 CGGAGAGTATAAATGCAATATTCGACA 59.672 37.037 0.00 0.00 0.00 4.35
1772 1860 7.541091 TCGGAGAGTATAAATGCAATATTCGAC 59.459 37.037 0.00 0.00 0.00 4.20
1773 1861 7.599171 TCGGAGAGTATAAATGCAATATTCGA 58.401 34.615 0.00 0.00 0.00 3.71
1774 1862 7.812309 TCGGAGAGTATAAATGCAATATTCG 57.188 36.000 0.00 0.00 0.00 3.34
1802 1890 8.604035 TCAAAGAGAGTATAAACGATTGATTGC 58.396 33.333 0.00 0.00 0.00 3.56
1817 1905 9.204570 CCGAAAGTAGAAATTTCAAAGAGAGTA 57.795 33.333 19.99 0.00 36.63 2.59
1818 1906 7.308049 GCCGAAAGTAGAAATTTCAAAGAGAGT 60.308 37.037 19.99 0.00 36.63 3.24
1819 1907 7.018235 GCCGAAAGTAGAAATTTCAAAGAGAG 58.982 38.462 19.99 6.57 36.63 3.20
1820 1908 6.485313 TGCCGAAAGTAGAAATTTCAAAGAGA 59.515 34.615 19.99 0.00 36.63 3.10
1857 1958 2.227388 TCTCAAAAGAGTACGTCGGACC 59.773 50.000 3.34 0.00 0.00 4.46
1870 1971 8.062065 AGATGGTAAGAGTAGAGTCTCAAAAG 57.938 38.462 0.00 0.00 36.97 2.27
1871 1972 8.423906 AAGATGGTAAGAGTAGAGTCTCAAAA 57.576 34.615 0.00 0.00 36.97 2.44
1873 1974 7.148222 CGAAAGATGGTAAGAGTAGAGTCTCAA 60.148 40.741 0.00 0.00 36.97 3.02
1874 1975 6.316640 CGAAAGATGGTAAGAGTAGAGTCTCA 59.683 42.308 0.00 0.00 36.97 3.27
1875 1976 6.238538 CCGAAAGATGGTAAGAGTAGAGTCTC 60.239 46.154 0.00 0.00 34.96 3.36
1876 1977 5.591067 CCGAAAGATGGTAAGAGTAGAGTCT 59.409 44.000 0.00 0.00 0.00 3.24
1877 1978 5.221087 CCCGAAAGATGGTAAGAGTAGAGTC 60.221 48.000 0.00 0.00 0.00 3.36
1878 1979 4.645588 CCCGAAAGATGGTAAGAGTAGAGT 59.354 45.833 0.00 0.00 0.00 3.24
1879 1980 4.038162 CCCCGAAAGATGGTAAGAGTAGAG 59.962 50.000 0.00 0.00 0.00 2.43
1880 1981 3.958798 CCCCGAAAGATGGTAAGAGTAGA 59.041 47.826 0.00 0.00 0.00 2.59
1881 1982 3.492829 GCCCCGAAAGATGGTAAGAGTAG 60.493 52.174 0.00 0.00 0.00 2.57
1882 1983 2.433239 GCCCCGAAAGATGGTAAGAGTA 59.567 50.000 0.00 0.00 0.00 2.59
1883 1984 1.209747 GCCCCGAAAGATGGTAAGAGT 59.790 52.381 0.00 0.00 0.00 3.24
1886 1987 2.017049 CTTGCCCCGAAAGATGGTAAG 58.983 52.381 0.00 0.00 38.41 2.34
1935 2037 1.133407 GGCAGTCACCACGTTCAAAAA 59.867 47.619 0.00 0.00 0.00 1.94
1936 2038 0.736053 GGCAGTCACCACGTTCAAAA 59.264 50.000 0.00 0.00 0.00 2.44
1937 2039 0.393132 TGGCAGTCACCACGTTCAAA 60.393 50.000 0.00 0.00 33.75 2.69
1938 2040 0.393132 TTGGCAGTCACCACGTTCAA 60.393 50.000 0.00 0.00 40.19 2.69
1939 2041 0.813610 CTTGGCAGTCACCACGTTCA 60.814 55.000 0.00 0.00 40.19 3.18
1940 2042 0.814010 ACTTGGCAGTCACCACGTTC 60.814 55.000 0.00 0.00 38.97 3.95
1950 2052 2.158755 ACTCTGCAAACTACTTGGCAGT 60.159 45.455 11.67 0.00 38.86 4.40
2059 2162 4.172625 TGGTTCGCCAACAGCAAT 57.827 50.000 0.00 0.00 45.88 3.56
2131 2234 2.715046 TCACTGTTCATGATCAAGGCC 58.285 47.619 0.00 0.00 0.00 5.19
2184 2288 5.799827 AGCCTGGTTATGCTTTACAAAAA 57.200 34.783 0.00 0.00 32.94 1.94
2436 2552 3.407424 TGGTGAAGTTCTGATGTGAGG 57.593 47.619 4.17 0.00 0.00 3.86
2446 2562 6.371809 TGTAAAGTGTTCATGGTGAAGTTC 57.628 37.500 0.00 0.00 37.00 3.01
2454 2570 7.648142 AGTACATGTTTGTAAAGTGTTCATGG 58.352 34.615 2.30 0.00 39.96 3.66
2466 2582 7.070696 AGGGATGCATACTAGTACATGTTTGTA 59.929 37.037 9.27 0.00 37.28 2.41
2524 2650 7.938563 TTGTTAACAATATGAGTTGTTTGGC 57.061 32.000 17.01 3.20 46.96 4.52
2540 2667 7.067615 TCTGTTAGCTCCACATTTTTGTTAACA 59.932 33.333 3.59 3.59 0.00 2.41
2541 2668 7.378728 GTCTGTTAGCTCCACATTTTTGTTAAC 59.621 37.037 0.00 0.00 0.00 2.01
2686 2819 7.234988 AGGAAGTGGTATCTACTTTAGTTGTGT 59.765 37.037 0.59 0.00 38.42 3.72
2689 2822 9.804758 CTAAGGAAGTGGTATCTACTTTAGTTG 57.195 37.037 0.59 0.00 38.42 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.