Multiple sequence alignment - TraesCS1B01G276700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G276700 chr1B 100.000 2392 0 0 1 2392 484359535 484361926 0.000000e+00 4418.0
1 TraesCS1B01G276700 chr1B 83.657 618 58 27 980 1570 484376354 484376955 2.090000e-150 542.0
2 TraesCS1B01G276700 chr1B 91.935 310 24 1 2083 2391 616604934 616604625 1.310000e-117 433.0
3 TraesCS1B01G276700 chr1A 99.036 934 7 1 1 934 71707851 71708782 0.000000e+00 1674.0
4 TraesCS1B01G276700 chr1A 97.430 934 20 3 1 934 48209827 48208898 0.000000e+00 1589.0
5 TraesCS1B01G276700 chr1A 92.780 651 37 7 933 1577 461351288 461351934 0.000000e+00 933.0
6 TraesCS1B01G276700 chr1A 83.223 602 73 21 980 1570 461372778 461373362 5.860000e-146 527.0
7 TraesCS1B01G276700 chr1A 90.764 314 25 2 2080 2392 84048866 84049176 1.320000e-112 416.0
8 TraesCS1B01G276700 chr1A 85.235 149 16 6 1882 2027 556592591 556592736 5.330000e-32 148.0
9 TraesCS1B01G276700 chr1A 88.785 107 9 2 1765 1868 461352011 461352117 6.940000e-26 128.0
10 TraesCS1B01G276700 chr1A 96.491 57 1 1 1666 1722 461351948 461352003 2.530000e-15 93.5
11 TraesCS1B01G276700 chr1A 88.333 60 7 0 1207 1266 460997976 460997917 3.300000e-09 73.1
12 TraesCS1B01G276700 chr5A 97.859 934 16 3 1 934 555169623 555170552 0.000000e+00 1611.0
13 TraesCS1B01G276700 chr4A 97.953 928 15 3 7 933 488741621 488740697 0.000000e+00 1605.0
14 TraesCS1B01G276700 chr4A 89.362 94 8 2 1569 1661 464687273 464687365 1.500000e-22 117.0
15 TraesCS1B01G276700 chr3A 97.444 939 17 4 1 938 351145220 351144288 0.000000e+00 1594.0
16 TraesCS1B01G276700 chr3A 86.184 152 13 5 1888 2034 745072435 745072583 8.850000e-35 158.0
17 TraesCS1B01G276700 chr3A 85.526 152 14 4 1888 2034 744995342 744995490 4.120000e-33 152.0
18 TraesCS1B01G276700 chr2B 97.216 934 20 2 1 934 642786388 642785461 0.000000e+00 1576.0
19 TraesCS1B01G276700 chr4B 97.106 933 20 3 1 932 360403942 360404868 0.000000e+00 1567.0
20 TraesCS1B01G276700 chr4B 91.765 85 7 0 1576 1660 18440835 18440919 4.180000e-23 119.0
21 TraesCS1B01G276700 chr7A 96.684 935 25 3 1 934 724038878 724037949 0.000000e+00 1550.0
22 TraesCS1B01G276700 chr6B 96.592 939 25 4 1 938 508622603 508623535 0.000000e+00 1550.0
23 TraesCS1B01G276700 chr6B 85.417 144 14 4 1888 2025 338016062 338016204 2.480000e-30 143.0
24 TraesCS1B01G276700 chr6B 97.183 71 2 0 1590 1660 289694999 289695069 1.160000e-23 121.0
25 TraesCS1B01G276700 chr1D 90.396 656 41 7 935 1577 361844866 361845512 0.000000e+00 843.0
26 TraesCS1B01G276700 chr1D 91.243 354 24 6 1193 1545 361914745 361915092 2.150000e-130 475.0
27 TraesCS1B01G276700 chr1D 86.861 137 17 1 1888 2024 342447772 342447637 4.120000e-33 152.0
28 TraesCS1B01G276700 chr1D 89.167 120 11 1 982 1101 361914483 361914600 5.330000e-32 148.0
29 TraesCS1B01G276700 chr1D 76.800 250 53 3 1207 1452 361358670 361358918 4.150000e-28 135.0
30 TraesCS1B01G276700 chr1D 97.500 40 1 0 1765 1804 361845582 361845621 4.270000e-08 69.4
31 TraesCS1B01G276700 chr7D 93.871 310 18 1 2081 2389 618174658 618174967 1.290000e-127 466.0
32 TraesCS1B01G276700 chr7D 90.476 315 28 2 2080 2392 135423126 135422812 4.760000e-112 414.0
33 TraesCS1B01G276700 chr3B 91.483 317 26 1 2076 2391 752235326 752235642 3.650000e-118 435.0
34 TraesCS1B01G276700 chr3B 89.937 318 31 1 2076 2392 758134767 758134450 2.210000e-110 409.0
35 TraesCS1B01G276700 chr3B 87.500 96 12 0 1568 1663 237977240 237977335 6.990000e-21 111.0
36 TraesCS1B01G276700 chr4D 91.195 318 24 2 2076 2392 466736188 466735874 1.700000e-116 429.0
37 TraesCS1B01G276700 chr4D 87.413 143 12 2 1888 2025 458556175 458556316 2.460000e-35 159.0
38 TraesCS1B01G276700 chr4D 92.500 80 6 0 1581 1660 9574414 9574493 5.400000e-22 115.0
39 TraesCS1B01G276700 chr6D 90.909 319 24 3 2075 2392 447890235 447889921 7.900000e-115 424.0
40 TraesCS1B01G276700 chr7B 91.083 314 25 3 2080 2392 720821917 720821606 2.840000e-114 422.0
41 TraesCS1B01G276700 chr7B 87.597 129 14 2 1909 2036 675384692 675384819 5.330000e-32 148.0
42 TraesCS1B01G276700 chr3D 87.143 140 13 4 1890 2025 452677766 452677628 1.150000e-33 154.0
43 TraesCS1B01G276700 chr5D 88.618 123 12 2 1888 2010 558913443 558913563 5.330000e-32 148.0
44 TraesCS1B01G276700 chr5D 90.805 87 8 0 1575 1661 522111428 522111514 1.500000e-22 117.0
45 TraesCS1B01G276700 chr6A 92.683 82 6 0 1579 1660 101296061 101295980 4.180000e-23 119.0
46 TraesCS1B01G276700 chr6A 90.698 86 8 0 1579 1664 500714665 500714580 5.400000e-22 115.0
47 TraesCS1B01G276700 chr5B 87.500 96 11 1 1568 1663 406172672 406172766 2.510000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G276700 chr1B 484359535 484361926 2391 False 4418.000000 4418 100.000000 1 2392 1 chr1B.!!$F1 2391
1 TraesCS1B01G276700 chr1B 484376354 484376955 601 False 542.000000 542 83.657000 980 1570 1 chr1B.!!$F2 590
2 TraesCS1B01G276700 chr1A 71707851 71708782 931 False 1674.000000 1674 99.036000 1 934 1 chr1A.!!$F1 933
3 TraesCS1B01G276700 chr1A 48208898 48209827 929 True 1589.000000 1589 97.430000 1 934 1 chr1A.!!$R1 933
4 TraesCS1B01G276700 chr1A 461372778 461373362 584 False 527.000000 527 83.223000 980 1570 1 chr1A.!!$F3 590
5 TraesCS1B01G276700 chr1A 461351288 461352117 829 False 384.833333 933 92.685333 933 1868 3 chr1A.!!$F5 935
6 TraesCS1B01G276700 chr5A 555169623 555170552 929 False 1611.000000 1611 97.859000 1 934 1 chr5A.!!$F1 933
7 TraesCS1B01G276700 chr4A 488740697 488741621 924 True 1605.000000 1605 97.953000 7 933 1 chr4A.!!$R1 926
8 TraesCS1B01G276700 chr3A 351144288 351145220 932 True 1594.000000 1594 97.444000 1 938 1 chr3A.!!$R1 937
9 TraesCS1B01G276700 chr2B 642785461 642786388 927 True 1576.000000 1576 97.216000 1 934 1 chr2B.!!$R1 933
10 TraesCS1B01G276700 chr4B 360403942 360404868 926 False 1567.000000 1567 97.106000 1 932 1 chr4B.!!$F2 931
11 TraesCS1B01G276700 chr7A 724037949 724038878 929 True 1550.000000 1550 96.684000 1 934 1 chr7A.!!$R1 933
12 TraesCS1B01G276700 chr6B 508622603 508623535 932 False 1550.000000 1550 96.592000 1 938 1 chr6B.!!$F3 937
13 TraesCS1B01G276700 chr1D 361844866 361845621 755 False 456.200000 843 93.948000 935 1804 2 chr1D.!!$F2 869
14 TraesCS1B01G276700 chr1D 361914483 361915092 609 False 311.500000 475 90.205000 982 1545 2 chr1D.!!$F3 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 446 2.355716 CCTTATCTGGGTTTCAAGGCGA 60.356 50.0 0.0 0.0 30.14 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2181 0.033011 ACTCGGGAGGTGTAGATGCT 60.033 55.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
445 446 2.355716 CCTTATCTGGGTTTCAAGGCGA 60.356 50.000 0.00 0.00 30.14 5.54
841 846 7.317390 TCTTATCTGTCGTGTTAGTTTATGCA 58.683 34.615 0.00 0.00 0.00 3.96
955 961 5.614324 ACATAAATCATCCTTCCACGAGA 57.386 39.130 0.00 0.00 0.00 4.04
956 962 5.360591 ACATAAATCATCCTTCCACGAGAC 58.639 41.667 0.00 0.00 0.00 3.36
957 963 3.981071 AAATCATCCTTCCACGAGACA 57.019 42.857 0.00 0.00 0.00 3.41
958 964 2.969628 ATCATCCTTCCACGAGACAC 57.030 50.000 0.00 0.00 0.00 3.67
1116 1127 5.276868 CCGTATTGTGATTTCGTTGAGATCC 60.277 44.000 0.00 0.00 0.00 3.36
1118 1129 6.036083 CGTATTGTGATTTCGTTGAGATCCTT 59.964 38.462 0.00 0.00 0.00 3.36
1119 1130 7.222031 CGTATTGTGATTTCGTTGAGATCCTTA 59.778 37.037 0.00 0.00 0.00 2.69
1120 1131 6.968131 TTGTGATTTCGTTGAGATCCTTAG 57.032 37.500 0.00 0.00 0.00 2.18
1126 1137 6.963049 TTTCGTTGAGATCCTTAGCTTTAC 57.037 37.500 0.00 0.00 0.00 2.01
1127 1138 5.654603 TCGTTGAGATCCTTAGCTTTACA 57.345 39.130 0.00 0.00 0.00 2.41
1140 1193 7.663905 TCCTTAGCTTTACATTACACACACAAT 59.336 33.333 0.00 0.00 0.00 2.71
1152 1205 9.554724 CATTACACACACAATTGATAGTTAACC 57.445 33.333 13.59 0.00 0.00 2.85
1158 1211 5.197549 CACAATTGATAGTTAACCGATGCG 58.802 41.667 13.59 0.00 0.00 4.73
1472 1587 0.388659 AGCCGTTGTGGTTGTACGTA 59.611 50.000 0.00 0.00 41.21 3.57
1528 1650 4.263677 GTCATCGTCGTCGTTATGCTTTTA 59.736 41.667 1.33 0.00 38.33 1.52
1550 1674 4.000331 TCTCTCTCCAGAAAAAGCTGTG 58.000 45.455 0.00 0.00 34.06 3.66
1562 1686 3.050275 GCTGTGGTCGTTGCTCCC 61.050 66.667 0.00 0.00 0.00 4.30
1577 1701 5.296780 CGTTGCTCCCTGAATAAACACATAT 59.703 40.000 0.00 0.00 0.00 1.78
1578 1702 6.183360 CGTTGCTCCCTGAATAAACACATATT 60.183 38.462 0.00 0.00 0.00 1.28
1579 1703 6.942532 TGCTCCCTGAATAAACACATATTC 57.057 37.500 0.00 0.00 40.91 1.75
1580 1704 5.827797 TGCTCCCTGAATAAACACATATTCC 59.172 40.000 4.99 0.00 40.17 3.01
1581 1705 5.241728 GCTCCCTGAATAAACACATATTCCC 59.758 44.000 4.99 0.00 40.17 3.97
1583 1707 6.980577 TCCCTGAATAAACACATATTCCCTT 58.019 36.000 4.99 0.00 40.17 3.95
1585 1709 7.341769 TCCCTGAATAAACACATATTCCCTTTG 59.658 37.037 4.99 0.00 40.17 2.77
1587 1711 8.531146 CCTGAATAAACACATATTCCCTTTGTT 58.469 33.333 4.99 0.00 40.17 2.83
1588 1712 9.927668 CTGAATAAACACATATTCCCTTTGTTT 57.072 29.630 0.00 0.00 40.17 2.83
1595 1719 9.874205 AACACATATTCCCTTTGTTTCATAATG 57.126 29.630 0.00 0.00 0.00 1.90
1596 1720 9.034800 ACACATATTCCCTTTGTTTCATAATGT 57.965 29.630 0.00 0.00 0.00 2.71
1602 1726 8.698973 TTCCCTTTGTTTCATAATGTAAGACA 57.301 30.769 0.00 0.00 0.00 3.41
1603 1727 8.877864 TCCCTTTGTTTCATAATGTAAGACAT 57.122 30.769 0.00 0.00 41.31 3.06
1605 1729 9.927668 CCCTTTGTTTCATAATGTAAGACATTT 57.072 29.630 9.92 0.00 45.80 2.32
1629 1753 8.453238 TTTTTGGCACTAGTGTAGTATCAAAA 57.547 30.769 23.44 21.76 41.91 2.44
1630 1754 8.453238 TTTTGGCACTAGTGTAGTATCAAAAA 57.547 30.769 23.44 14.03 41.39 1.94
1655 1779 5.348986 CGTCTTATATTATGGGACGGATGG 58.651 45.833 17.59 0.46 43.69 3.51
1656 1780 5.126545 CGTCTTATATTATGGGACGGATGGA 59.873 44.000 17.59 0.00 43.69 3.41
1657 1781 6.574350 GTCTTATATTATGGGACGGATGGAG 58.426 44.000 0.00 0.00 0.00 3.86
1658 1782 6.154706 GTCTTATATTATGGGACGGATGGAGT 59.845 42.308 0.00 0.00 0.00 3.85
1659 1783 7.341256 GTCTTATATTATGGGACGGATGGAGTA 59.659 40.741 0.00 0.00 0.00 2.59
1660 1784 5.934402 ATATTATGGGACGGATGGAGTAC 57.066 43.478 0.00 0.00 0.00 2.73
1661 1785 3.323774 TTATGGGACGGATGGAGTACT 57.676 47.619 0.00 0.00 0.00 2.73
1662 1786 2.176247 ATGGGACGGATGGAGTACTT 57.824 50.000 0.00 0.00 0.00 2.24
1663 1787 1.191535 TGGGACGGATGGAGTACTTG 58.808 55.000 0.00 0.00 0.00 3.16
1667 1791 2.607187 GACGGATGGAGTACTTGTGTG 58.393 52.381 0.00 0.00 0.00 3.82
1676 1800 4.587262 TGGAGTACTTGTGTGTCAGTGTAT 59.413 41.667 0.00 0.00 0.00 2.29
1833 1958 1.069906 GTACGTACGGTCGTCACACTT 60.070 52.381 21.06 0.00 43.12 3.16
1836 1961 0.031178 GTACGGTCGTCACACTTGGT 59.969 55.000 0.00 0.00 0.00 3.67
1849 1974 2.047655 TTGGTGCGTGTCGGGATC 60.048 61.111 0.00 0.00 0.00 3.36
1853 1978 0.179094 GGTGCGTGTCGGGATCATTA 60.179 55.000 0.00 0.00 0.00 1.90
1904 2032 9.673454 AACTTTGTTCGTTCCTAAATATTTGTC 57.327 29.630 11.05 0.00 0.00 3.18
1905 2033 9.063615 ACTTTGTTCGTTCCTAAATATTTGTCT 57.936 29.630 11.05 0.00 0.00 3.41
1906 2034 9.893305 CTTTGTTCGTTCCTAAATATTTGTCTT 57.107 29.630 11.05 0.00 0.00 3.01
1965 2093 7.138692 AGTGTAGATTCACTCATTTTTGCTC 57.861 36.000 0.00 0.00 44.07 4.26
1966 2094 6.150140 AGTGTAGATTCACTCATTTTTGCTCC 59.850 38.462 0.00 0.00 44.07 4.70
1967 2095 4.691860 AGATTCACTCATTTTTGCTCCG 57.308 40.909 0.00 0.00 0.00 4.63
1968 2096 4.074970 AGATTCACTCATTTTTGCTCCGT 58.925 39.130 0.00 0.00 0.00 4.69
1969 2097 5.245531 AGATTCACTCATTTTTGCTCCGTA 58.754 37.500 0.00 0.00 0.00 4.02
1970 2098 5.882557 AGATTCACTCATTTTTGCTCCGTAT 59.117 36.000 0.00 0.00 0.00 3.06
1971 2099 4.944962 TCACTCATTTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1972 2100 4.323417 TCACTCATTTTTGCTCCGTATGT 58.677 39.130 0.00 0.00 0.00 2.29
1973 2101 5.483811 TCACTCATTTTTGCTCCGTATGTA 58.516 37.500 0.00 0.00 0.00 2.29
1974 2102 5.580691 TCACTCATTTTTGCTCCGTATGTAG 59.419 40.000 0.00 0.00 0.00 2.74
1975 2103 5.351465 CACTCATTTTTGCTCCGTATGTAGT 59.649 40.000 0.00 0.00 0.00 2.73
1976 2104 5.581085 ACTCATTTTTGCTCCGTATGTAGTC 59.419 40.000 0.00 0.00 0.00 2.59
1977 2105 5.483811 TCATTTTTGCTCCGTATGTAGTCA 58.516 37.500 0.00 0.00 0.00 3.41
1978 2106 6.112734 TCATTTTTGCTCCGTATGTAGTCAT 58.887 36.000 0.00 0.00 38.00 3.06
1979 2107 6.597672 TCATTTTTGCTCCGTATGTAGTCATT 59.402 34.615 0.00 0.00 35.70 2.57
1980 2108 6.811253 TTTTTGCTCCGTATGTAGTCATTT 57.189 33.333 0.00 0.00 35.70 2.32
1981 2109 6.417191 TTTTGCTCCGTATGTAGTCATTTC 57.583 37.500 0.00 0.00 35.70 2.17
1982 2110 5.339008 TTGCTCCGTATGTAGTCATTTCT 57.661 39.130 0.00 0.00 35.70 2.52
1983 2111 5.339008 TGCTCCGTATGTAGTCATTTCTT 57.661 39.130 0.00 0.00 35.70 2.52
1984 2112 6.459670 TGCTCCGTATGTAGTCATTTCTTA 57.540 37.500 0.00 0.00 35.70 2.10
1985 2113 6.869695 TGCTCCGTATGTAGTCATTTCTTAA 58.130 36.000 0.00 0.00 35.70 1.85
1986 2114 7.324935 TGCTCCGTATGTAGTCATTTCTTAAA 58.675 34.615 0.00 0.00 35.70 1.52
1987 2115 7.820386 TGCTCCGTATGTAGTCATTTCTTAAAA 59.180 33.333 0.00 0.00 35.70 1.52
1988 2116 8.827677 GCTCCGTATGTAGTCATTTCTTAAAAT 58.172 33.333 0.00 0.00 35.43 1.82
2023 2151 9.320295 TGACAAATATTTAAAAATGGAGGGAGT 57.680 29.630 0.00 0.00 0.00 3.85
2031 2159 5.830000 AAAAATGGAGGGAGTAATTACGC 57.170 39.130 10.56 10.56 0.00 4.42
2032 2160 4.497291 AAATGGAGGGAGTAATTACGCA 57.503 40.909 19.17 0.84 0.00 5.24
2033 2161 4.497291 AATGGAGGGAGTAATTACGCAA 57.503 40.909 19.17 2.08 0.00 4.85
2053 2181 7.972832 CGCAAGTTAGGGGTATGATATTTAA 57.027 36.000 0.00 0.00 0.00 1.52
2054 2182 8.029642 CGCAAGTTAGGGGTATGATATTTAAG 57.970 38.462 0.00 0.00 0.00 1.85
2055 2183 7.360946 CGCAAGTTAGGGGTATGATATTTAAGC 60.361 40.741 0.00 0.00 0.00 3.09
2056 2184 7.447238 GCAAGTTAGGGGTATGATATTTAAGCA 59.553 37.037 0.00 0.00 0.00 3.91
2057 2185 9.520515 CAAGTTAGGGGTATGATATTTAAGCAT 57.479 33.333 0.00 0.00 0.00 3.79
2058 2186 9.740710 AAGTTAGGGGTATGATATTTAAGCATC 57.259 33.333 0.00 0.00 0.00 3.91
2059 2187 9.117223 AGTTAGGGGTATGATATTTAAGCATCT 57.883 33.333 0.00 0.00 0.00 2.90
2062 2190 8.449423 AGGGGTATGATATTTAAGCATCTACA 57.551 34.615 0.00 0.00 0.00 2.74
2063 2191 8.322091 AGGGGTATGATATTTAAGCATCTACAC 58.678 37.037 0.00 0.00 0.00 2.90
2064 2192 7.553044 GGGGTATGATATTTAAGCATCTACACC 59.447 40.741 10.23 10.23 29.41 4.16
2065 2193 8.322091 GGGTATGATATTTAAGCATCTACACCT 58.678 37.037 0.00 0.00 0.00 4.00
2066 2194 9.372369 GGTATGATATTTAAGCATCTACACCTC 57.628 37.037 0.00 0.00 0.00 3.85
2067 2195 9.372369 GTATGATATTTAAGCATCTACACCTCC 57.628 37.037 0.00 0.00 0.00 4.30
2068 2196 6.769512 TGATATTTAAGCATCTACACCTCCC 58.230 40.000 0.00 0.00 0.00 4.30
2069 2197 3.536956 TTTAAGCATCTACACCTCCCG 57.463 47.619 0.00 0.00 0.00 5.14
2070 2198 2.447408 TAAGCATCTACACCTCCCGA 57.553 50.000 0.00 0.00 0.00 5.14
2071 2199 1.115467 AAGCATCTACACCTCCCGAG 58.885 55.000 0.00 0.00 0.00 4.63
2072 2200 0.033011 AGCATCTACACCTCCCGAGT 60.033 55.000 0.00 0.00 0.00 4.18
2073 2201 0.386113 GCATCTACACCTCCCGAGTC 59.614 60.000 0.00 0.00 0.00 3.36
2074 2202 1.763968 CATCTACACCTCCCGAGTCA 58.236 55.000 0.00 0.00 0.00 3.41
2075 2203 1.405821 CATCTACACCTCCCGAGTCAC 59.594 57.143 0.00 0.00 0.00 3.67
2076 2204 0.675837 TCTACACCTCCCGAGTCACG 60.676 60.000 0.00 0.00 42.18 4.35
2077 2205 0.675837 CTACACCTCCCGAGTCACGA 60.676 60.000 0.00 0.00 45.77 4.35
2078 2206 0.034767 TACACCTCCCGAGTCACGAT 60.035 55.000 0.00 0.00 45.77 3.73
2079 2207 0.034767 ACACCTCCCGAGTCACGATA 60.035 55.000 0.00 0.00 45.77 2.92
2080 2208 0.381089 CACCTCCCGAGTCACGATAC 59.619 60.000 0.00 0.00 45.77 2.24
2081 2209 1.094073 ACCTCCCGAGTCACGATACG 61.094 60.000 0.00 0.00 45.77 3.06
2082 2210 1.009900 CTCCCGAGTCACGATACGC 60.010 63.158 0.00 0.00 45.77 4.42
2083 2211 1.437772 CTCCCGAGTCACGATACGCT 61.438 60.000 0.00 0.00 45.77 5.07
2084 2212 1.009900 CCCGAGTCACGATACGCTC 60.010 63.158 0.00 0.00 45.77 5.03
2085 2213 1.009900 CCGAGTCACGATACGCTCC 60.010 63.158 0.00 0.00 45.77 4.70
2086 2214 1.437772 CCGAGTCACGATACGCTCCT 61.438 60.000 0.00 0.00 45.77 3.69
2087 2215 0.316278 CGAGTCACGATACGCTCCTG 60.316 60.000 0.00 0.00 45.77 3.86
2088 2216 0.592754 GAGTCACGATACGCTCCTGC 60.593 60.000 0.00 0.00 0.00 4.85
2089 2217 1.589196 GTCACGATACGCTCCTGCC 60.589 63.158 0.00 0.00 35.36 4.85
2090 2218 1.753078 TCACGATACGCTCCTGCCT 60.753 57.895 0.00 0.00 35.36 4.75
2091 2219 1.299468 CACGATACGCTCCTGCCTC 60.299 63.158 0.00 0.00 35.36 4.70
2092 2220 2.336809 CGATACGCTCCTGCCTCC 59.663 66.667 0.00 0.00 35.36 4.30
2093 2221 2.196925 CGATACGCTCCTGCCTCCT 61.197 63.158 0.00 0.00 35.36 3.69
2094 2222 1.663173 GATACGCTCCTGCCTCCTC 59.337 63.158 0.00 0.00 35.36 3.71
2095 2223 1.811645 GATACGCTCCTGCCTCCTCC 61.812 65.000 0.00 0.00 35.36 4.30
2099 2227 2.837291 CTCCTGCCTCCTCCCGAG 60.837 72.222 0.00 0.00 38.46 4.63
2135 2263 2.444706 CGGGAGGCTCCAGATCCA 60.445 66.667 33.27 0.00 38.64 3.41
2136 2264 2.066393 CGGGAGGCTCCAGATCCAA 61.066 63.158 33.27 0.00 38.64 3.53
2137 2265 1.414061 CGGGAGGCTCCAGATCCAAT 61.414 60.000 33.27 0.00 38.64 3.16
2138 2266 0.399833 GGGAGGCTCCAGATCCAATC 59.600 60.000 33.27 10.24 38.64 2.67
2139 2267 0.034616 GGAGGCTCCAGATCCAATCG 59.965 60.000 28.55 0.00 36.28 3.34
2140 2268 0.602372 GAGGCTCCAGATCCAATCGC 60.602 60.000 2.15 0.00 0.00 4.58
2141 2269 1.599240 GGCTCCAGATCCAATCGCC 60.599 63.158 0.00 0.00 0.00 5.54
2142 2270 1.599240 GCTCCAGATCCAATCGCCC 60.599 63.158 0.00 0.00 0.00 6.13
2143 2271 1.301244 CTCCAGATCCAATCGCCCG 60.301 63.158 0.00 0.00 0.00 6.13
2144 2272 1.748329 CTCCAGATCCAATCGCCCGA 61.748 60.000 0.00 0.00 0.00 5.14
2145 2273 1.595382 CCAGATCCAATCGCCCGAC 60.595 63.158 0.00 0.00 0.00 4.79
2146 2274 1.595382 CAGATCCAATCGCCCGACC 60.595 63.158 0.00 0.00 0.00 4.79
2147 2275 1.762460 AGATCCAATCGCCCGACCT 60.762 57.895 0.00 0.00 0.00 3.85
2148 2276 1.301009 GATCCAATCGCCCGACCTC 60.301 63.158 0.00 0.00 0.00 3.85
2149 2277 2.717139 GATCCAATCGCCCGACCTCC 62.717 65.000 0.00 0.00 0.00 4.30
2150 2278 4.547367 CCAATCGCCCGACCTCCC 62.547 72.222 0.00 0.00 0.00 4.30
2151 2279 4.547367 CAATCGCCCGACCTCCCC 62.547 72.222 0.00 0.00 0.00 4.81
2152 2280 4.798682 AATCGCCCGACCTCCCCT 62.799 66.667 0.00 0.00 0.00 4.79
2153 2281 4.798682 ATCGCCCGACCTCCCCTT 62.799 66.667 0.00 0.00 0.00 3.95
2156 2284 3.471806 GCCCGACCTCCCCTTCTC 61.472 72.222 0.00 0.00 0.00 2.87
2157 2285 2.764547 CCCGACCTCCCCTTCTCC 60.765 72.222 0.00 0.00 0.00 3.71
2158 2286 2.364961 CCGACCTCCCCTTCTCCT 59.635 66.667 0.00 0.00 0.00 3.69
2159 2287 1.758906 CCGACCTCCCCTTCTCCTC 60.759 68.421 0.00 0.00 0.00 3.71
2160 2288 1.308326 CGACCTCCCCTTCTCCTCT 59.692 63.158 0.00 0.00 0.00 3.69
2161 2289 0.324830 CGACCTCCCCTTCTCCTCTT 60.325 60.000 0.00 0.00 0.00 2.85
2162 2290 1.491668 GACCTCCCCTTCTCCTCTTC 58.508 60.000 0.00 0.00 0.00 2.87
2163 2291 0.043485 ACCTCCCCTTCTCCTCTTCC 59.957 60.000 0.00 0.00 0.00 3.46
2164 2292 0.341609 CCTCCCCTTCTCCTCTTCCT 59.658 60.000 0.00 0.00 0.00 3.36
2165 2293 1.691163 CCTCCCCTTCTCCTCTTCCTC 60.691 61.905 0.00 0.00 0.00 3.71
2166 2294 0.340208 TCCCCTTCTCCTCTTCCTCC 59.660 60.000 0.00 0.00 0.00 4.30
2167 2295 0.341609 CCCCTTCTCCTCTTCCTCCT 59.658 60.000 0.00 0.00 0.00 3.69
2168 2296 1.691163 CCCCTTCTCCTCTTCCTCCTC 60.691 61.905 0.00 0.00 0.00 3.71
2169 2297 1.691163 CCCTTCTCCTCTTCCTCCTCC 60.691 61.905 0.00 0.00 0.00 4.30
2170 2298 1.691163 CCTTCTCCTCTTCCTCCTCCC 60.691 61.905 0.00 0.00 0.00 4.30
2171 2299 1.290732 CTTCTCCTCTTCCTCCTCCCT 59.709 57.143 0.00 0.00 0.00 4.20
2172 2300 0.930726 TCTCCTCTTCCTCCTCCCTC 59.069 60.000 0.00 0.00 0.00 4.30
2173 2301 0.467290 CTCCTCTTCCTCCTCCCTCG 60.467 65.000 0.00 0.00 0.00 4.63
2174 2302 2.131067 CCTCTTCCTCCTCCCTCGC 61.131 68.421 0.00 0.00 0.00 5.03
2175 2303 2.042843 TCTTCCTCCTCCCTCGCC 60.043 66.667 0.00 0.00 0.00 5.54
2176 2304 3.532155 CTTCCTCCTCCCTCGCCG 61.532 72.222 0.00 0.00 0.00 6.46
2215 2343 3.880846 CGAAGCCTTGCCATCGCC 61.881 66.667 0.00 0.00 33.26 5.54
2216 2344 3.880846 GAAGCCTTGCCATCGCCG 61.881 66.667 0.00 0.00 0.00 6.46
2295 2423 3.723348 GGCCGAAGCGTGGTGTTC 61.723 66.667 0.00 0.00 41.24 3.18
2296 2424 4.072088 GCCGAAGCGTGGTGTTCG 62.072 66.667 0.00 0.00 44.12 3.95
2298 2426 4.072088 CGAAGCGTGGTGTTCGGC 62.072 66.667 0.00 0.00 41.47 5.54
2299 2427 3.723348 GAAGCGTGGTGTTCGGCC 61.723 66.667 0.00 0.00 0.00 6.13
2307 2435 4.651008 GTGTTCGGCCGGACGTCA 62.651 66.667 32.26 26.08 34.94 4.35
2308 2436 4.651008 TGTTCGGCCGGACGTCAC 62.651 66.667 32.26 26.78 34.94 3.67
2317 2445 3.998672 GGACGTCACGGCAGGGAA 61.999 66.667 18.91 0.00 36.10 3.97
2318 2446 2.264794 GACGTCACGGCAGGGAAT 59.735 61.111 11.55 0.00 33.63 3.01
2319 2447 2.047274 ACGTCACGGCAGGGAATG 60.047 61.111 0.35 0.00 0.00 2.67
2320 2448 2.819595 CGTCACGGCAGGGAATGG 60.820 66.667 0.00 0.00 0.00 3.16
2327 2455 4.496336 GCAGGGAATGGCGGCTCT 62.496 66.667 11.43 0.00 0.00 4.09
2328 2456 2.203126 CAGGGAATGGCGGCTCTC 60.203 66.667 11.43 6.43 0.00 3.20
2329 2457 3.483869 AGGGAATGGCGGCTCTCC 61.484 66.667 17.87 17.87 0.00 3.71
2339 2467 3.309582 GGCTCTCCGGTGATTCCA 58.690 61.111 6.68 0.00 35.57 3.53
2340 2468 1.832912 GGCTCTCCGGTGATTCCAT 59.167 57.895 6.68 0.00 35.57 3.41
2341 2469 1.048601 GGCTCTCCGGTGATTCCATA 58.951 55.000 6.68 0.00 35.57 2.74
2342 2470 1.270358 GGCTCTCCGGTGATTCCATAC 60.270 57.143 6.68 0.00 35.57 2.39
2343 2471 1.270358 GCTCTCCGGTGATTCCATACC 60.270 57.143 6.68 0.00 35.57 2.73
2344 2472 2.320781 CTCTCCGGTGATTCCATACCT 58.679 52.381 6.68 0.00 34.77 3.08
2345 2473 2.297597 CTCTCCGGTGATTCCATACCTC 59.702 54.545 6.68 0.00 34.77 3.85
2346 2474 1.344763 CTCCGGTGATTCCATACCTCC 59.655 57.143 0.00 0.00 34.77 4.30
2347 2475 1.128200 CCGGTGATTCCATACCTCCA 58.872 55.000 0.00 0.00 34.77 3.86
2348 2476 1.202651 CCGGTGATTCCATACCTCCAC 60.203 57.143 0.00 0.00 34.77 4.02
2349 2477 1.538204 CGGTGATTCCATACCTCCACG 60.538 57.143 0.00 0.00 34.77 4.94
2350 2478 1.202651 GGTGATTCCATACCTCCACGG 60.203 57.143 0.00 0.00 35.90 4.94
2351 2479 0.468226 TGATTCCATACCTCCACGGC 59.532 55.000 0.00 0.00 35.61 5.68
2352 2480 0.468226 GATTCCATACCTCCACGGCA 59.532 55.000 0.00 0.00 35.61 5.69
2353 2481 0.469917 ATTCCATACCTCCACGGCAG 59.530 55.000 0.00 0.00 35.61 4.85
2354 2482 0.907704 TTCCATACCTCCACGGCAGT 60.908 55.000 0.00 0.00 35.61 4.40
2355 2483 1.144057 CCATACCTCCACGGCAGTC 59.856 63.158 0.00 0.00 35.61 3.51
2356 2484 1.226974 CATACCTCCACGGCAGTCG 60.227 63.158 0.00 0.00 45.88 4.18
2357 2485 2.423898 ATACCTCCACGGCAGTCGG 61.424 63.158 0.00 0.00 44.45 4.79
2360 2488 4.379243 CTCCACGGCAGTCGGCTT 62.379 66.667 0.00 0.00 44.45 4.35
2361 2489 4.373116 TCCACGGCAGTCGGCTTC 62.373 66.667 0.00 0.00 44.45 3.86
2362 2490 4.680237 CCACGGCAGTCGGCTTCA 62.680 66.667 0.00 0.00 44.45 3.02
2363 2491 2.664851 CACGGCAGTCGGCTTCAA 60.665 61.111 0.00 0.00 44.45 2.69
2364 2492 2.357517 ACGGCAGTCGGCTTCAAG 60.358 61.111 0.00 0.00 44.45 3.02
2365 2493 3.121030 CGGCAGTCGGCTTCAAGG 61.121 66.667 0.00 0.00 44.01 3.61
2366 2494 2.032681 GGCAGTCGGCTTCAAGGT 59.967 61.111 0.00 0.00 44.01 3.50
2367 2495 2.035442 GGCAGTCGGCTTCAAGGTC 61.035 63.158 0.00 0.00 44.01 3.85
2368 2496 1.004440 GCAGTCGGCTTCAAGGTCT 60.004 57.895 0.00 0.00 40.25 3.85
2369 2497 1.294659 GCAGTCGGCTTCAAGGTCTG 61.295 60.000 0.00 0.00 40.25 3.51
2370 2498 0.671781 CAGTCGGCTTCAAGGTCTGG 60.672 60.000 0.00 0.00 0.00 3.86
2371 2499 1.376037 GTCGGCTTCAAGGTCTGGG 60.376 63.158 0.00 0.00 0.00 4.45
2372 2500 2.045926 CGGCTTCAAGGTCTGGGG 60.046 66.667 0.00 0.00 0.00 4.96
2373 2501 2.361737 GGCTTCAAGGTCTGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
2374 2502 2.747855 GCTTCAAGGTCTGGGGCG 60.748 66.667 0.00 0.00 0.00 6.13
2375 2503 2.750350 CTTCAAGGTCTGGGGCGT 59.250 61.111 0.00 0.00 0.00 5.68
2376 2504 1.376037 CTTCAAGGTCTGGGGCGTC 60.376 63.158 0.00 0.00 0.00 5.19
2377 2505 3.234630 TTCAAGGTCTGGGGCGTCG 62.235 63.158 0.00 0.00 0.00 5.12
2390 2518 3.803082 CGTCGCGGTCGTTAGGGA 61.803 66.667 6.13 0.00 36.96 4.20
2391 2519 2.202531 GTCGCGGTCGTTAGGGAC 60.203 66.667 6.13 7.77 41.73 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
445 446 1.330655 CCACATGACCCTACGAGCCT 61.331 60.000 0.00 0.00 0.00 4.58
720 722 5.143376 TCGGAAGGTACTAAGACCAAAAG 57.857 43.478 0.00 0.00 42.47 2.27
809 812 3.687125 ACACGACAGATAAGAGGACAGA 58.313 45.455 0.00 0.00 0.00 3.41
841 846 2.014128 CACAACCACCGAACAGAAACT 58.986 47.619 0.00 0.00 0.00 2.66
940 946 0.526211 CGTGTCTCGTGGAAGGATGA 59.474 55.000 0.00 0.00 34.52 2.92
945 951 1.734477 CTGCCGTGTCTCGTGGAAG 60.734 63.158 0.00 0.00 37.94 3.46
955 961 4.996434 GGCTCTGCACTGCCGTGT 62.996 66.667 10.12 0.00 43.16 4.49
972 983 7.531857 TGCTCCTAAACTTCTCTATATGGAG 57.468 40.000 9.73 9.73 40.85 3.86
976 987 7.584122 TCGTTGCTCCTAAACTTCTCTATAT 57.416 36.000 0.00 0.00 0.00 0.86
1116 1127 9.117145 CAATTGTGTGTGTAATGTAAAGCTAAG 57.883 33.333 0.00 0.00 0.00 2.18
1118 1129 8.384607 TCAATTGTGTGTGTAATGTAAAGCTA 57.615 30.769 5.13 0.00 0.00 3.32
1119 1130 7.270757 TCAATTGTGTGTGTAATGTAAAGCT 57.729 32.000 5.13 0.00 0.00 3.74
1120 1131 9.277565 CTATCAATTGTGTGTGTAATGTAAAGC 57.722 33.333 5.13 0.00 0.00 3.51
1126 1137 9.554724 GGTTAACTATCAATTGTGTGTGTAATG 57.445 33.333 5.13 0.00 0.00 1.90
1127 1138 8.447833 CGGTTAACTATCAATTGTGTGTGTAAT 58.552 33.333 5.13 0.00 0.00 1.89
1140 1193 4.748102 GGATTCGCATCGGTTAACTATCAA 59.252 41.667 5.42 0.00 0.00 2.57
1152 1205 3.242413 CCTTGTTAACTGGATTCGCATCG 60.242 47.826 7.22 0.00 0.00 3.84
1158 1211 4.965119 AATCGCCTTGTTAACTGGATTC 57.035 40.909 18.11 4.25 0.00 2.52
1426 1538 3.945285 TCAACCCATCCGAGCTTTTATTC 59.055 43.478 0.00 0.00 0.00 1.75
1528 1650 4.565236 CCACAGCTTTTTCTGGAGAGAGAT 60.565 45.833 0.00 0.00 38.36 2.75
1550 1674 2.396590 TTATTCAGGGAGCAACGACC 57.603 50.000 0.00 0.00 0.00 4.79
1562 1686 9.927668 AAACAAAGGGAATATGTGTTTATTCAG 57.072 29.630 0.00 0.00 39.84 3.02
1577 1701 8.698973 TGTCTTACATTATGAAACAAAGGGAA 57.301 30.769 0.00 0.00 0.00 3.97
1578 1702 8.877864 ATGTCTTACATTATGAAACAAAGGGA 57.122 30.769 0.00 0.00 34.67 4.20
1604 1728 8.453238 TTTTGATACTACACTAGTGCCAAAAA 57.547 30.769 22.90 15.18 41.98 1.94
1605 1729 8.453238 TTTTTGATACTACACTAGTGCCAAAA 57.547 30.769 22.90 21.16 42.50 2.44
1627 1751 7.274447 TCCGTCCCATAATATAAGACGTTTTT 58.726 34.615 17.31 0.00 46.62 1.94
1628 1752 6.819284 TCCGTCCCATAATATAAGACGTTTT 58.181 36.000 17.31 0.00 46.62 2.43
1629 1753 6.409524 TCCGTCCCATAATATAAGACGTTT 57.590 37.500 17.31 0.00 46.62 3.60
1630 1754 6.395629 CATCCGTCCCATAATATAAGACGTT 58.604 40.000 17.31 7.06 46.62 3.99
1631 1755 5.105473 CCATCCGTCCCATAATATAAGACGT 60.105 44.000 17.31 0.00 46.62 4.34
1633 1757 6.154706 ACTCCATCCGTCCCATAATATAAGAC 59.845 42.308 0.00 0.00 0.00 3.01
1634 1758 6.261435 ACTCCATCCGTCCCATAATATAAGA 58.739 40.000 0.00 0.00 0.00 2.10
1635 1759 6.546428 ACTCCATCCGTCCCATAATATAAG 57.454 41.667 0.00 0.00 0.00 1.73
1636 1760 7.186972 AGTACTCCATCCGTCCCATAATATAA 58.813 38.462 0.00 0.00 0.00 0.98
1637 1761 6.738635 AGTACTCCATCCGTCCCATAATATA 58.261 40.000 0.00 0.00 0.00 0.86
1638 1762 5.590818 AGTACTCCATCCGTCCCATAATAT 58.409 41.667 0.00 0.00 0.00 1.28
1639 1763 5.006896 AGTACTCCATCCGTCCCATAATA 57.993 43.478 0.00 0.00 0.00 0.98
1640 1764 3.858135 AGTACTCCATCCGTCCCATAAT 58.142 45.455 0.00 0.00 0.00 1.28
1641 1765 3.323774 AGTACTCCATCCGTCCCATAA 57.676 47.619 0.00 0.00 0.00 1.90
1642 1766 2.963101 CAAGTACTCCATCCGTCCCATA 59.037 50.000 0.00 0.00 0.00 2.74
1643 1767 1.762957 CAAGTACTCCATCCGTCCCAT 59.237 52.381 0.00 0.00 0.00 4.00
1644 1768 1.191535 CAAGTACTCCATCCGTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
1645 1769 1.134788 CACAAGTACTCCATCCGTCCC 60.135 57.143 0.00 0.00 0.00 4.46
1646 1770 1.549170 ACACAAGTACTCCATCCGTCC 59.451 52.381 0.00 0.00 0.00 4.79
1647 1771 2.029290 ACACACAAGTACTCCATCCGTC 60.029 50.000 0.00 0.00 0.00 4.79
1648 1772 1.968493 ACACACAAGTACTCCATCCGT 59.032 47.619 0.00 0.00 0.00 4.69
1649 1773 2.029380 TGACACACAAGTACTCCATCCG 60.029 50.000 0.00 0.00 0.00 4.18
1650 1774 3.006967 ACTGACACACAAGTACTCCATCC 59.993 47.826 0.00 0.00 0.00 3.51
1651 1775 3.990469 CACTGACACACAAGTACTCCATC 59.010 47.826 0.00 0.00 0.00 3.51
1652 1776 3.388024 ACACTGACACACAAGTACTCCAT 59.612 43.478 0.00 0.00 0.00 3.41
1653 1777 2.764010 ACACTGACACACAAGTACTCCA 59.236 45.455 0.00 0.00 0.00 3.86
1654 1778 3.454371 ACACTGACACACAAGTACTCC 57.546 47.619 0.00 0.00 0.00 3.85
1655 1779 5.107453 GCAATACACTGACACACAAGTACTC 60.107 44.000 0.00 0.00 0.00 2.59
1656 1780 4.750098 GCAATACACTGACACACAAGTACT 59.250 41.667 0.00 0.00 0.00 2.73
1657 1781 4.376008 CGCAATACACTGACACACAAGTAC 60.376 45.833 0.00 0.00 0.00 2.73
1658 1782 3.738791 CGCAATACACTGACACACAAGTA 59.261 43.478 0.00 0.00 0.00 2.24
1659 1783 2.543848 CGCAATACACTGACACACAAGT 59.456 45.455 0.00 0.00 0.00 3.16
1660 1784 2.543848 ACGCAATACACTGACACACAAG 59.456 45.455 0.00 0.00 0.00 3.16
1661 1785 2.542178 GACGCAATACACTGACACACAA 59.458 45.455 0.00 0.00 0.00 3.33
1662 1786 2.131972 GACGCAATACACTGACACACA 58.868 47.619 0.00 0.00 0.00 3.72
1663 1787 2.404215 AGACGCAATACACTGACACAC 58.596 47.619 0.00 0.00 0.00 3.82
1667 1791 1.656095 GCAGAGACGCAATACACTGAC 59.344 52.381 0.00 0.00 0.00 3.51
1676 1800 2.168326 TTGATTGAGCAGAGACGCAA 57.832 45.000 0.00 0.00 33.80 4.85
1748 1873 9.712305 GGACAGTACAATATATTTGTGCTATCT 57.288 33.333 17.54 8.38 42.10 1.98
1749 1874 9.489084 TGGACAGTACAATATATTTGTGCTATC 57.511 33.333 15.95 13.83 42.10 2.08
1750 1875 9.494271 CTGGACAGTACAATATATTTGTGCTAT 57.506 33.333 15.95 8.13 42.10 2.97
1751 1876 8.482943 ACTGGACAGTACAATATATTTGTGCTA 58.517 33.333 15.95 6.40 42.10 3.49
1752 1877 7.338710 ACTGGACAGTACAATATATTTGTGCT 58.661 34.615 15.95 13.23 44.22 4.40
1753 1878 7.553881 ACTGGACAGTACAATATATTTGTGC 57.446 36.000 2.58 10.80 40.43 4.57
1754 1879 9.161629 TGAACTGGACAGTACAATATATTTGTG 57.838 33.333 5.25 0.09 41.58 3.33
1755 1880 9.733556 TTGAACTGGACAGTACAATATATTTGT 57.266 29.630 5.25 0.00 41.58 2.83
1759 1884 9.342308 CCATTTGAACTGGACAGTACAATATAT 57.658 33.333 5.25 0.00 41.58 0.86
1760 1885 8.325787 ACCATTTGAACTGGACAGTACAATATA 58.674 33.333 8.67 0.00 41.58 0.86
1761 1886 7.121168 CACCATTTGAACTGGACAGTACAATAT 59.879 37.037 8.67 0.00 41.58 1.28
1762 1887 6.429692 CACCATTTGAACTGGACAGTACAATA 59.570 38.462 8.67 0.00 41.58 1.90
1763 1888 5.241506 CACCATTTGAACTGGACAGTACAAT 59.758 40.000 8.67 2.28 41.58 2.71
1833 1958 2.178876 AATGATCCCGACACGCACCA 62.179 55.000 0.00 0.00 0.00 4.17
1836 1961 2.613026 ATTAATGATCCCGACACGCA 57.387 45.000 0.00 0.00 0.00 5.24
1840 1965 4.443621 TGCGTAAATTAATGATCCCGACA 58.556 39.130 0.00 0.00 0.00 4.35
1849 1974 4.156922 TGGGGTGACTTGCGTAAATTAATG 59.843 41.667 0.00 0.00 0.00 1.90
1853 1978 2.279935 TGGGGTGACTTGCGTAAATT 57.720 45.000 0.00 0.00 0.00 1.82
1878 2006 9.673454 GACAAATATTTAGGAACGAACAAAGTT 57.327 29.630 0.00 0.00 34.07 2.66
1879 2007 9.063615 AGACAAATATTTAGGAACGAACAAAGT 57.936 29.630 0.00 0.00 0.00 2.66
1880 2008 9.893305 AAGACAAATATTTAGGAACGAACAAAG 57.107 29.630 0.00 0.00 0.00 2.77
1942 2070 6.317857 GGAGCAAAAATGAGTGAATCTACAC 58.682 40.000 0.00 0.00 40.60 2.90
1943 2071 5.122239 CGGAGCAAAAATGAGTGAATCTACA 59.878 40.000 0.00 0.00 0.00 2.74
1944 2072 5.122396 ACGGAGCAAAAATGAGTGAATCTAC 59.878 40.000 0.00 0.00 0.00 2.59
1945 2073 5.245531 ACGGAGCAAAAATGAGTGAATCTA 58.754 37.500 0.00 0.00 0.00 1.98
1946 2074 4.074970 ACGGAGCAAAAATGAGTGAATCT 58.925 39.130 0.00 0.00 0.00 2.40
1947 2075 4.425577 ACGGAGCAAAAATGAGTGAATC 57.574 40.909 0.00 0.00 0.00 2.52
1948 2076 5.415701 ACATACGGAGCAAAAATGAGTGAAT 59.584 36.000 0.00 0.00 0.00 2.57
1949 2077 4.759693 ACATACGGAGCAAAAATGAGTGAA 59.240 37.500 0.00 0.00 0.00 3.18
1950 2078 4.323417 ACATACGGAGCAAAAATGAGTGA 58.677 39.130 0.00 0.00 0.00 3.41
1951 2079 4.685169 ACATACGGAGCAAAAATGAGTG 57.315 40.909 0.00 0.00 0.00 3.51
1952 2080 5.488341 ACTACATACGGAGCAAAAATGAGT 58.512 37.500 0.00 0.00 0.00 3.41
1953 2081 5.580691 TGACTACATACGGAGCAAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
1954 2082 5.483811 TGACTACATACGGAGCAAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
1955 2083 5.794687 TGACTACATACGGAGCAAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
1956 2084 7.336931 AGAAATGACTACATACGGAGCAAAAAT 59.663 33.333 0.00 0.00 35.50 1.82
1957 2085 6.653320 AGAAATGACTACATACGGAGCAAAAA 59.347 34.615 0.00 0.00 35.50 1.94
1958 2086 6.170506 AGAAATGACTACATACGGAGCAAAA 58.829 36.000 0.00 0.00 35.50 2.44
1959 2087 5.730550 AGAAATGACTACATACGGAGCAAA 58.269 37.500 0.00 0.00 35.50 3.68
1960 2088 5.339008 AGAAATGACTACATACGGAGCAA 57.661 39.130 0.00 0.00 35.50 3.91
1961 2089 5.339008 AAGAAATGACTACATACGGAGCA 57.661 39.130 0.00 0.00 35.50 4.26
1962 2090 7.766219 TTTAAGAAATGACTACATACGGAGC 57.234 36.000 0.00 0.00 35.50 4.70
1997 2125 9.320295 ACTCCCTCCATTTTTAAATATTTGTCA 57.680 29.630 11.05 0.00 0.00 3.58
2005 2133 8.410912 GCGTAATTACTCCCTCCATTTTTAAAT 58.589 33.333 13.56 0.00 0.00 1.40
2006 2134 7.393796 TGCGTAATTACTCCCTCCATTTTTAAA 59.606 33.333 13.56 0.00 0.00 1.52
2007 2135 6.885376 TGCGTAATTACTCCCTCCATTTTTAA 59.115 34.615 13.56 0.00 0.00 1.52
2008 2136 6.416415 TGCGTAATTACTCCCTCCATTTTTA 58.584 36.000 13.56 0.00 0.00 1.52
2009 2137 5.258051 TGCGTAATTACTCCCTCCATTTTT 58.742 37.500 13.56 0.00 0.00 1.94
2010 2138 4.850680 TGCGTAATTACTCCCTCCATTTT 58.149 39.130 13.56 0.00 0.00 1.82
2011 2139 4.497291 TGCGTAATTACTCCCTCCATTT 57.503 40.909 13.56 0.00 0.00 2.32
2012 2140 4.080526 ACTTGCGTAATTACTCCCTCCATT 60.081 41.667 13.56 0.00 0.00 3.16
2013 2141 3.454812 ACTTGCGTAATTACTCCCTCCAT 59.545 43.478 13.56 0.00 0.00 3.41
2014 2142 2.835764 ACTTGCGTAATTACTCCCTCCA 59.164 45.455 13.56 0.00 0.00 3.86
2015 2143 3.538634 ACTTGCGTAATTACTCCCTCC 57.461 47.619 13.56 0.00 0.00 4.30
2016 2144 5.048507 CCTAACTTGCGTAATTACTCCCTC 58.951 45.833 13.56 0.00 0.00 4.30
2017 2145 4.141779 CCCTAACTTGCGTAATTACTCCCT 60.142 45.833 13.56 0.00 0.00 4.20
2018 2146 4.124970 CCCTAACTTGCGTAATTACTCCC 58.875 47.826 13.56 3.03 0.00 4.30
2019 2147 4.124970 CCCCTAACTTGCGTAATTACTCC 58.875 47.826 13.56 5.32 0.00 3.85
2020 2148 4.763073 ACCCCTAACTTGCGTAATTACTC 58.237 43.478 13.56 6.35 0.00 2.59
2021 2149 4.831674 ACCCCTAACTTGCGTAATTACT 57.168 40.909 13.56 0.00 0.00 2.24
2022 2150 6.282930 TCATACCCCTAACTTGCGTAATTAC 58.717 40.000 5.47 5.47 0.00 1.89
2023 2151 6.482898 TCATACCCCTAACTTGCGTAATTA 57.517 37.500 0.00 0.00 0.00 1.40
2024 2152 5.362105 TCATACCCCTAACTTGCGTAATT 57.638 39.130 0.00 0.00 0.00 1.40
2025 2153 5.562298 ATCATACCCCTAACTTGCGTAAT 57.438 39.130 0.00 0.00 0.00 1.89
2026 2154 6.675413 ATATCATACCCCTAACTTGCGTAA 57.325 37.500 0.00 0.00 0.00 3.18
2027 2155 6.675413 AATATCATACCCCTAACTTGCGTA 57.325 37.500 0.00 0.00 0.00 4.42
2028 2156 5.562298 AATATCATACCCCTAACTTGCGT 57.438 39.130 0.00 0.00 0.00 5.24
2029 2157 7.360946 GCTTAAATATCATACCCCTAACTTGCG 60.361 40.741 0.00 0.00 0.00 4.85
2030 2158 7.447238 TGCTTAAATATCATACCCCTAACTTGC 59.553 37.037 0.00 0.00 0.00 4.01
2031 2159 8.918202 TGCTTAAATATCATACCCCTAACTTG 57.082 34.615 0.00 0.00 0.00 3.16
2032 2160 9.740710 GATGCTTAAATATCATACCCCTAACTT 57.259 33.333 0.00 0.00 0.00 2.66
2033 2161 9.117223 AGATGCTTAAATATCATACCCCTAACT 57.883 33.333 0.00 0.00 0.00 2.24
2036 2164 9.555411 TGTAGATGCTTAAATATCATACCCCTA 57.445 33.333 0.00 0.00 0.00 3.53
2037 2165 8.322091 GTGTAGATGCTTAAATATCATACCCCT 58.678 37.037 0.00 0.00 0.00 4.79
2038 2166 7.553044 GGTGTAGATGCTTAAATATCATACCCC 59.447 40.741 0.00 0.00 0.00 4.95
2039 2167 8.322091 AGGTGTAGATGCTTAAATATCATACCC 58.678 37.037 0.00 0.00 0.00 3.69
2040 2168 9.372369 GAGGTGTAGATGCTTAAATATCATACC 57.628 37.037 0.00 0.00 0.00 2.73
2041 2169 9.372369 GGAGGTGTAGATGCTTAAATATCATAC 57.628 37.037 0.00 0.00 0.00 2.39
2042 2170 8.540388 GGGAGGTGTAGATGCTTAAATATCATA 58.460 37.037 0.00 0.00 0.00 2.15
2043 2171 7.398024 GGGAGGTGTAGATGCTTAAATATCAT 58.602 38.462 0.00 0.00 0.00 2.45
2044 2172 6.518369 CGGGAGGTGTAGATGCTTAAATATCA 60.518 42.308 0.00 0.00 0.00 2.15
2045 2173 5.869888 CGGGAGGTGTAGATGCTTAAATATC 59.130 44.000 0.00 0.00 0.00 1.63
2046 2174 5.542635 TCGGGAGGTGTAGATGCTTAAATAT 59.457 40.000 0.00 0.00 0.00 1.28
2047 2175 4.897076 TCGGGAGGTGTAGATGCTTAAATA 59.103 41.667 0.00 0.00 0.00 1.40
2048 2176 3.709653 TCGGGAGGTGTAGATGCTTAAAT 59.290 43.478 0.00 0.00 0.00 1.40
2049 2177 3.101437 TCGGGAGGTGTAGATGCTTAAA 58.899 45.455 0.00 0.00 0.00 1.52
2050 2178 2.693591 CTCGGGAGGTGTAGATGCTTAA 59.306 50.000 0.00 0.00 0.00 1.85
2051 2179 2.307768 CTCGGGAGGTGTAGATGCTTA 58.692 52.381 0.00 0.00 0.00 3.09
2052 2180 1.115467 CTCGGGAGGTGTAGATGCTT 58.885 55.000 0.00 0.00 0.00 3.91
2053 2181 0.033011 ACTCGGGAGGTGTAGATGCT 60.033 55.000 0.00 0.00 0.00 3.79
2054 2182 0.386113 GACTCGGGAGGTGTAGATGC 59.614 60.000 0.00 0.00 0.00 3.91
2055 2183 1.405821 GTGACTCGGGAGGTGTAGATG 59.594 57.143 0.00 0.00 0.00 2.90
2056 2184 1.765230 GTGACTCGGGAGGTGTAGAT 58.235 55.000 0.00 0.00 0.00 1.98
2057 2185 0.675837 CGTGACTCGGGAGGTGTAGA 60.676 60.000 0.00 0.00 35.71 2.59
2058 2186 0.675837 TCGTGACTCGGGAGGTGTAG 60.676 60.000 0.00 0.00 40.32 2.74
2059 2187 0.034767 ATCGTGACTCGGGAGGTGTA 60.035 55.000 0.00 0.00 40.32 2.90
2060 2188 0.034767 TATCGTGACTCGGGAGGTGT 60.035 55.000 0.00 0.00 40.32 4.16
2061 2189 0.381089 GTATCGTGACTCGGGAGGTG 59.619 60.000 0.00 0.00 40.32 4.00
2062 2190 1.094073 CGTATCGTGACTCGGGAGGT 61.094 60.000 0.00 0.00 40.32 3.85
2063 2191 1.647629 CGTATCGTGACTCGGGAGG 59.352 63.158 0.00 0.00 40.32 4.30
2064 2192 1.009900 GCGTATCGTGACTCGGGAG 60.010 63.158 0.00 0.00 40.32 4.30
2065 2193 1.434622 GAGCGTATCGTGACTCGGGA 61.435 60.000 0.00 0.00 40.32 5.14
2066 2194 1.009900 GAGCGTATCGTGACTCGGG 60.010 63.158 0.00 0.00 40.32 5.14
2067 2195 1.009900 GGAGCGTATCGTGACTCGG 60.010 63.158 0.00 0.00 40.32 4.63
2068 2196 0.316278 CAGGAGCGTATCGTGACTCG 60.316 60.000 6.62 0.00 44.85 4.18
2069 2197 0.592754 GCAGGAGCGTATCGTGACTC 60.593 60.000 14.09 0.00 44.85 3.36
2070 2198 1.433879 GCAGGAGCGTATCGTGACT 59.566 57.895 14.09 0.00 44.85 3.41
2071 2199 1.589196 GGCAGGAGCGTATCGTGAC 60.589 63.158 14.09 8.99 44.85 3.67
2072 2200 1.725557 GAGGCAGGAGCGTATCGTGA 61.726 60.000 14.09 0.00 44.85 4.35
2073 2201 1.299468 GAGGCAGGAGCGTATCGTG 60.299 63.158 7.75 7.75 44.85 4.35
2074 2202 2.491022 GGAGGCAGGAGCGTATCGT 61.491 63.158 0.00 0.00 43.41 3.73
2075 2203 2.136196 GAGGAGGCAGGAGCGTATCG 62.136 65.000 0.00 0.00 43.41 2.92
2076 2204 1.663173 GAGGAGGCAGGAGCGTATC 59.337 63.158 0.00 0.00 43.41 2.24
2077 2205 1.834822 GGAGGAGGCAGGAGCGTAT 60.835 63.158 0.00 0.00 43.41 3.06
2078 2206 2.442272 GGAGGAGGCAGGAGCGTA 60.442 66.667 0.00 0.00 43.41 4.42
2082 2210 2.837291 CTCGGGAGGAGGCAGGAG 60.837 72.222 0.00 0.00 39.22 3.69
2117 2245 3.237741 GGATCTGGAGCCTCCCGG 61.238 72.222 8.62 0.00 35.03 5.73
2118 2246 1.414061 ATTGGATCTGGAGCCTCCCG 61.414 60.000 8.62 1.20 37.85 5.14
2119 2247 0.399833 GATTGGATCTGGAGCCTCCC 59.600 60.000 8.62 0.00 37.85 4.30
2120 2248 0.034616 CGATTGGATCTGGAGCCTCC 59.965 60.000 2.98 2.98 37.85 4.30
2121 2249 0.602372 GCGATTGGATCTGGAGCCTC 60.602 60.000 6.45 0.00 37.85 4.70
2122 2250 1.449353 GCGATTGGATCTGGAGCCT 59.551 57.895 6.45 0.00 37.85 4.58
2123 2251 1.599240 GGCGATTGGATCTGGAGCC 60.599 63.158 0.00 0.00 37.40 4.70
2124 2252 1.599240 GGGCGATTGGATCTGGAGC 60.599 63.158 0.00 0.00 0.00 4.70
2125 2253 1.301244 CGGGCGATTGGATCTGGAG 60.301 63.158 0.00 0.00 0.00 3.86
2126 2254 1.760480 TCGGGCGATTGGATCTGGA 60.760 57.895 0.00 0.00 0.00 3.86
2127 2255 1.595382 GTCGGGCGATTGGATCTGG 60.595 63.158 0.00 0.00 0.00 3.86
2128 2256 1.595382 GGTCGGGCGATTGGATCTG 60.595 63.158 0.00 0.00 0.00 2.90
2129 2257 1.749334 GAGGTCGGGCGATTGGATCT 61.749 60.000 0.00 0.00 0.00 2.75
2130 2258 1.301009 GAGGTCGGGCGATTGGATC 60.301 63.158 0.00 0.00 0.00 3.36
2131 2259 2.808206 GGAGGTCGGGCGATTGGAT 61.808 63.158 0.00 0.00 0.00 3.41
2132 2260 3.467226 GGAGGTCGGGCGATTGGA 61.467 66.667 0.00 0.00 0.00 3.53
2133 2261 4.547367 GGGAGGTCGGGCGATTGG 62.547 72.222 0.00 0.00 0.00 3.16
2134 2262 4.547367 GGGGAGGTCGGGCGATTG 62.547 72.222 0.00 0.00 0.00 2.67
2135 2263 4.798682 AGGGGAGGTCGGGCGATT 62.799 66.667 0.00 0.00 0.00 3.34
2136 2264 4.798682 AAGGGGAGGTCGGGCGAT 62.799 66.667 0.00 0.00 0.00 4.58
2139 2267 3.471806 GAGAAGGGGAGGTCGGGC 61.472 72.222 0.00 0.00 0.00 6.13
2140 2268 2.764547 GGAGAAGGGGAGGTCGGG 60.765 72.222 0.00 0.00 0.00 5.14
2141 2269 1.758906 GAGGAGAAGGGGAGGTCGG 60.759 68.421 0.00 0.00 0.00 4.79
2142 2270 0.324830 AAGAGGAGAAGGGGAGGTCG 60.325 60.000 0.00 0.00 0.00 4.79
2143 2271 1.491668 GAAGAGGAGAAGGGGAGGTC 58.508 60.000 0.00 0.00 0.00 3.85
2144 2272 0.043485 GGAAGAGGAGAAGGGGAGGT 59.957 60.000 0.00 0.00 0.00 3.85
2145 2273 0.341609 AGGAAGAGGAGAAGGGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
2146 2274 1.691163 GGAGGAAGAGGAGAAGGGGAG 60.691 61.905 0.00 0.00 0.00 4.30
2147 2275 0.340208 GGAGGAAGAGGAGAAGGGGA 59.660 60.000 0.00 0.00 0.00 4.81
2148 2276 0.341609 AGGAGGAAGAGGAGAAGGGG 59.658 60.000 0.00 0.00 0.00 4.79
2149 2277 1.691163 GGAGGAGGAAGAGGAGAAGGG 60.691 61.905 0.00 0.00 0.00 3.95
2150 2278 1.691163 GGGAGGAGGAAGAGGAGAAGG 60.691 61.905 0.00 0.00 0.00 3.46
2151 2279 1.290732 AGGGAGGAGGAAGAGGAGAAG 59.709 57.143 0.00 0.00 0.00 2.85
2152 2280 1.289530 GAGGGAGGAGGAAGAGGAGAA 59.710 57.143 0.00 0.00 0.00 2.87
2153 2281 0.930726 GAGGGAGGAGGAAGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
2154 2282 0.467290 CGAGGGAGGAGGAAGAGGAG 60.467 65.000 0.00 0.00 0.00 3.69
2155 2283 1.615814 CGAGGGAGGAGGAAGAGGA 59.384 63.158 0.00 0.00 0.00 3.71
2156 2284 2.131067 GCGAGGGAGGAGGAAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
2157 2285 2.131067 GGCGAGGGAGGAGGAAGAG 61.131 68.421 0.00 0.00 0.00 2.85
2158 2286 2.042843 GGCGAGGGAGGAGGAAGA 60.043 66.667 0.00 0.00 0.00 2.87
2159 2287 3.532155 CGGCGAGGGAGGAGGAAG 61.532 72.222 0.00 0.00 0.00 3.46
2197 2325 4.543084 GCGATGGCAAGGCTTCGC 62.543 66.667 30.16 30.16 45.78 4.70
2198 2326 3.880846 GGCGATGGCAAGGCTTCG 61.881 66.667 21.86 21.86 42.47 3.79
2199 2327 3.880846 CGGCGATGGCAAGGCTTC 61.881 66.667 0.00 0.00 42.47 3.86
2278 2406 3.723348 GAACACCACGCTTCGGCC 61.723 66.667 0.00 0.00 37.76 6.13
2279 2407 4.072088 CGAACACCACGCTTCGGC 62.072 66.667 0.00 0.00 36.46 5.54
2281 2409 4.072088 GCCGAACACCACGCTTCG 62.072 66.667 0.00 0.00 39.19 3.79
2282 2410 3.723348 GGCCGAACACCACGCTTC 61.723 66.667 0.00 0.00 0.00 3.86
2290 2418 4.651008 TGACGTCCGGCCGAACAC 62.651 66.667 30.73 18.81 0.00 3.32
2291 2419 4.651008 GTGACGTCCGGCCGAACA 62.651 66.667 30.73 15.57 0.00 3.18
2300 2428 3.310860 ATTCCCTGCCGTGACGTCC 62.311 63.158 14.12 3.43 0.00 4.79
2301 2429 2.100631 CATTCCCTGCCGTGACGTC 61.101 63.158 9.11 9.11 0.00 4.34
2302 2430 2.047274 CATTCCCTGCCGTGACGT 60.047 61.111 3.64 0.00 0.00 4.34
2303 2431 2.819595 CCATTCCCTGCCGTGACG 60.820 66.667 0.00 0.00 0.00 4.35
2304 2432 3.134127 GCCATTCCCTGCCGTGAC 61.134 66.667 0.00 0.00 0.00 3.67
2305 2433 4.776322 CGCCATTCCCTGCCGTGA 62.776 66.667 0.00 0.00 0.00 4.35
2310 2438 4.496336 AGAGCCGCCATTCCCTGC 62.496 66.667 0.00 0.00 0.00 4.85
2311 2439 2.203126 GAGAGCCGCCATTCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
2312 2440 3.483869 GGAGAGCCGCCATTCCCT 61.484 66.667 0.00 0.00 0.00 4.20
2322 2450 1.048601 TATGGAATCACCGGAGAGCC 58.951 55.000 9.46 12.63 42.61 4.70
2323 2451 1.270358 GGTATGGAATCACCGGAGAGC 60.270 57.143 9.46 1.66 42.61 4.09
2324 2452 2.297597 GAGGTATGGAATCACCGGAGAG 59.702 54.545 9.46 0.00 42.61 3.20
2325 2453 2.317040 GAGGTATGGAATCACCGGAGA 58.683 52.381 9.46 6.11 42.61 3.71
2326 2454 1.344763 GGAGGTATGGAATCACCGGAG 59.655 57.143 9.46 0.00 42.61 4.63
2327 2455 1.343580 TGGAGGTATGGAATCACCGGA 60.344 52.381 9.46 0.00 42.61 5.14
2328 2456 1.128200 TGGAGGTATGGAATCACCGG 58.872 55.000 0.00 0.00 42.61 5.28
2329 2457 1.538204 CGTGGAGGTATGGAATCACCG 60.538 57.143 0.00 0.00 42.61 4.94
2330 2458 1.202651 CCGTGGAGGTATGGAATCACC 60.203 57.143 0.00 0.00 35.54 4.02
2331 2459 1.810412 GCCGTGGAGGTATGGAATCAC 60.810 57.143 0.00 0.00 43.70 3.06
2332 2460 0.468226 GCCGTGGAGGTATGGAATCA 59.532 55.000 0.00 0.00 43.70 2.57
2333 2461 0.468226 TGCCGTGGAGGTATGGAATC 59.532 55.000 0.00 0.00 43.70 2.52
2334 2462 0.469917 CTGCCGTGGAGGTATGGAAT 59.530 55.000 0.00 0.00 43.70 3.01
2335 2463 0.907704 ACTGCCGTGGAGGTATGGAA 60.908 55.000 0.00 0.00 43.70 3.53
2336 2464 1.305802 ACTGCCGTGGAGGTATGGA 60.306 57.895 0.00 0.00 43.70 3.41
2337 2465 1.144057 GACTGCCGTGGAGGTATGG 59.856 63.158 0.00 0.00 43.70 2.74
2338 2466 1.226974 CGACTGCCGTGGAGGTATG 60.227 63.158 0.00 0.00 43.70 2.39
2339 2467 2.423898 CCGACTGCCGTGGAGGTAT 61.424 63.158 0.00 0.00 43.70 2.73
2340 2468 3.066190 CCGACTGCCGTGGAGGTA 61.066 66.667 0.00 0.00 43.70 3.08
2343 2471 4.379243 AAGCCGACTGCCGTGGAG 62.379 66.667 0.00 0.00 42.71 3.86
2344 2472 4.373116 GAAGCCGACTGCCGTGGA 62.373 66.667 0.00 0.00 42.71 4.02
2345 2473 4.680237 TGAAGCCGACTGCCGTGG 62.680 66.667 0.00 0.00 42.71 4.94
2346 2474 2.664851 TTGAAGCCGACTGCCGTG 60.665 61.111 0.00 0.00 42.71 4.94
2347 2475 2.357517 CTTGAAGCCGACTGCCGT 60.358 61.111 0.00 0.00 42.71 5.68
2348 2476 3.121030 CCTTGAAGCCGACTGCCG 61.121 66.667 0.00 0.00 42.71 5.69
2349 2477 2.032681 ACCTTGAAGCCGACTGCC 59.967 61.111 0.00 0.00 42.71 4.85
2350 2478 1.004440 AGACCTTGAAGCCGACTGC 60.004 57.895 0.00 0.00 41.71 4.40
2351 2479 0.671781 CCAGACCTTGAAGCCGACTG 60.672 60.000 0.00 0.00 0.00 3.51
2352 2480 1.674057 CCAGACCTTGAAGCCGACT 59.326 57.895 0.00 0.00 0.00 4.18
2353 2481 1.376037 CCCAGACCTTGAAGCCGAC 60.376 63.158 0.00 0.00 0.00 4.79
2354 2482 2.592993 CCCCAGACCTTGAAGCCGA 61.593 63.158 0.00 0.00 0.00 5.54
2355 2483 2.045926 CCCCAGACCTTGAAGCCG 60.046 66.667 0.00 0.00 0.00 5.52
2356 2484 2.361737 GCCCCAGACCTTGAAGCC 60.362 66.667 0.00 0.00 0.00 4.35
2357 2485 2.747855 CGCCCCAGACCTTGAAGC 60.748 66.667 0.00 0.00 0.00 3.86
2358 2486 1.376037 GACGCCCCAGACCTTGAAG 60.376 63.158 0.00 0.00 0.00 3.02
2359 2487 2.747686 GACGCCCCAGACCTTGAA 59.252 61.111 0.00 0.00 0.00 2.69
2360 2488 3.691342 CGACGCCCCAGACCTTGA 61.691 66.667 0.00 0.00 0.00 3.02
2373 2501 3.803082 TCCCTAACGACCGCGACG 61.803 66.667 19.98 19.98 41.64 5.12
2374 2502 2.202531 GTCCCTAACGACCGCGAC 60.203 66.667 8.23 0.00 41.64 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.