Multiple sequence alignment - TraesCS1B01G276100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G276100 chr1B 100.000 2535 0 0 1 2535 483865343 483867877 0.000000e+00 4682.0
1 TraesCS1B01G276100 chr1B 80.000 680 119 16 935 1608 484217461 484218129 1.050000e-133 486.0
2 TraesCS1B01G276100 chr1B 79.412 680 112 18 935 1608 484150475 484151132 2.970000e-124 455.0
3 TraesCS1B01G276100 chr1D 92.982 1596 94 10 401 1990 361204566 361206149 0.000000e+00 2311.0
4 TraesCS1B01G276100 chr1D 80.607 1088 164 30 915 1990 361213312 361214364 0.000000e+00 797.0
5 TraesCS1B01G276100 chr1D 94.019 418 21 2 2121 2535 361206517 361206933 4.600000e-177 630.0
6 TraesCS1B01G276100 chr1D 78.474 878 147 32 935 1803 361487831 361488675 1.030000e-148 536.0
7 TraesCS1B01G276100 chr1D 82.692 104 15 3 643 744 2758953 2759055 3.470000e-14 89.8
8 TraesCS1B01G276100 chr1D 100.000 30 0 0 1989 2018 361206164 361206193 3.520000e-04 56.5
9 TraesCS1B01G276100 chr1A 81.668 1151 175 25 928 2058 460967275 460968409 0.000000e+00 924.0
10 TraesCS1B01G276100 chr1A 78.495 279 46 10 635 909 102184503 102184235 1.210000e-38 171.0
11 TraesCS1B01G276100 chr6A 78.467 274 43 11 639 907 58021052 58021314 5.610000e-37 165.0
12 TraesCS1B01G276100 chr7D 77.083 288 44 17 635 915 29031756 29031484 2.030000e-31 147.0
13 TraesCS1B01G276100 chr6B 84.076 157 19 4 726 879 93989247 93989400 2.030000e-31 147.0
14 TraesCS1B01G276100 chrUn 81.212 165 19 6 770 923 18804910 18804747 3.420000e-24 122.0
15 TraesCS1B01G276100 chr5A 83.471 121 16 4 636 754 659502695 659502813 2.670000e-20 110.0
16 TraesCS1B01G276100 chr7A 81.967 122 21 1 639 759 13625141 13625020 4.460000e-18 102.0
17 TraesCS1B01G276100 chr7A 97.059 34 1 0 726 759 375901070 375901103 9.800000e-05 58.4
18 TraesCS1B01G276100 chr6D 77.953 127 25 3 634 758 414121570 414121445 2.700000e-10 76.8
19 TraesCS1B01G276100 chr3D 79.630 108 21 1 635 741 533933798 533933691 2.700000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G276100 chr1B 483865343 483867877 2534 False 4682.000000 4682 100.000 1 2535 1 chr1B.!!$F1 2534
1 TraesCS1B01G276100 chr1B 484217461 484218129 668 False 486.000000 486 80.000 935 1608 1 chr1B.!!$F3 673
2 TraesCS1B01G276100 chr1B 484150475 484151132 657 False 455.000000 455 79.412 935 1608 1 chr1B.!!$F2 673
3 TraesCS1B01G276100 chr1D 361204566 361206933 2367 False 999.166667 2311 95.667 401 2535 3 chr1D.!!$F4 2134
4 TraesCS1B01G276100 chr1D 361213312 361214364 1052 False 797.000000 797 80.607 915 1990 1 chr1D.!!$F2 1075
5 TraesCS1B01G276100 chr1D 361487831 361488675 844 False 536.000000 536 78.474 935 1803 1 chr1D.!!$F3 868
6 TraesCS1B01G276100 chr1A 460967275 460968409 1134 False 924.000000 924 81.668 928 2058 1 chr1A.!!$F1 1130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.399091 TGTCCTATGCTCAGGGGAGG 60.399 60.0 4.58 0.0 41.67 4.30 F
495 501 0.685097 TTGACAACGAGCTAGGCCTT 59.315 50.0 12.58 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1302 0.034089 GGGGAAGTAGTTGGCTGCAT 60.034 55.0 0.5 0.00 0.00 3.96 R
2262 2526 0.179225 GTACGTTGCATGCAAGGACG 60.179 55.0 43.2 37.35 42.36 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.739039 TCTACCATGTCATAAAACTTTGAATGG 58.261 33.333 0.00 0.00 37.01 3.16
30 31 7.537596 ACCATGTCATAAAACTTTGAATGGA 57.462 32.000 14.97 0.00 35.89 3.41
31 32 7.961351 ACCATGTCATAAAACTTTGAATGGAA 58.039 30.769 14.97 0.00 35.89 3.53
32 33 8.090214 ACCATGTCATAAAACTTTGAATGGAAG 58.910 33.333 14.97 0.00 35.89 3.46
33 34 8.090214 CCATGTCATAAAACTTTGAATGGAAGT 58.910 33.333 0.00 0.00 38.92 3.01
34 35 9.480053 CATGTCATAAAACTTTGAATGGAAGTT 57.520 29.630 0.00 0.00 46.27 2.66
35 36 9.696917 ATGTCATAAAACTTTGAATGGAAGTTC 57.303 29.630 3.07 0.00 44.24 3.01
36 37 8.690884 TGTCATAAAACTTTGAATGGAAGTTCA 58.309 29.630 5.01 0.00 44.24 3.18
37 38 9.696917 GTCATAAAACTTTGAATGGAAGTTCAT 57.303 29.630 5.01 0.00 44.24 2.57
42 43 9.696917 AAAACTTTGAATGGAAGTTCATACATC 57.303 29.630 5.01 0.00 44.24 3.06
43 44 8.408043 AACTTTGAATGGAAGTTCATACATCA 57.592 30.769 5.01 0.00 42.06 3.07
44 45 8.585471 ACTTTGAATGGAAGTTCATACATCAT 57.415 30.769 5.01 0.00 37.88 2.45
45 46 9.685276 ACTTTGAATGGAAGTTCATACATCATA 57.315 29.630 5.01 0.00 37.88 2.15
46 47 9.941664 CTTTGAATGGAAGTTCATACATCATAC 57.058 33.333 5.01 0.00 37.88 2.39
47 48 9.460019 TTTGAATGGAAGTTCATACATCATACA 57.540 29.630 5.01 0.00 37.88 2.29
48 49 8.437360 TGAATGGAAGTTCATACATCATACAC 57.563 34.615 5.01 0.00 33.41 2.90
49 50 8.267183 TGAATGGAAGTTCATACATCATACACT 58.733 33.333 5.01 0.00 33.41 3.55
50 51 9.764363 GAATGGAAGTTCATACATCATACACTA 57.236 33.333 5.01 0.00 0.00 2.74
51 52 9.770097 AATGGAAGTTCATACATCATACACTAG 57.230 33.333 5.01 0.00 0.00 2.57
52 53 8.533569 TGGAAGTTCATACATCATACACTAGA 57.466 34.615 5.01 0.00 0.00 2.43
53 54 8.977412 TGGAAGTTCATACATCATACACTAGAA 58.023 33.333 5.01 0.00 0.00 2.10
54 55 9.988815 GGAAGTTCATACATCATACACTAGAAT 57.011 33.333 5.01 0.00 0.00 2.40
83 84 8.533569 AAAGGAGAACTTTCATTGTAGGAAAA 57.466 30.769 0.00 0.00 46.20 2.29
84 85 8.533569 AAGGAGAACTTTCATTGTAGGAAAAA 57.466 30.769 0.00 0.00 35.35 1.94
85 86 8.712228 AGGAGAACTTTCATTGTAGGAAAAAT 57.288 30.769 0.00 0.00 34.15 1.82
86 87 9.807921 AGGAGAACTTTCATTGTAGGAAAAATA 57.192 29.630 0.00 0.00 34.15 1.40
87 88 9.841880 GGAGAACTTTCATTGTAGGAAAAATAC 57.158 33.333 0.00 0.00 34.15 1.89
88 89 9.543018 GAGAACTTTCATTGTAGGAAAAATACG 57.457 33.333 0.00 0.00 34.15 3.06
89 90 9.063615 AGAACTTTCATTGTAGGAAAAATACGT 57.936 29.630 0.00 0.00 34.15 3.57
90 91 9.326339 GAACTTTCATTGTAGGAAAAATACGTC 57.674 33.333 0.00 0.00 34.15 4.34
91 92 7.813645 ACTTTCATTGTAGGAAAAATACGTCC 58.186 34.615 0.00 0.00 34.15 4.79
92 93 7.664318 ACTTTCATTGTAGGAAAAATACGTCCT 59.336 33.333 0.00 0.00 46.29 3.85
93 94 7.605410 TTCATTGTAGGAAAAATACGTCCTC 57.395 36.000 0.00 0.00 43.44 3.71
94 95 6.703319 TCATTGTAGGAAAAATACGTCCTCA 58.297 36.000 0.00 0.00 43.44 3.86
95 96 6.592607 TCATTGTAGGAAAAATACGTCCTCAC 59.407 38.462 0.00 0.00 43.44 3.51
96 97 5.733620 TGTAGGAAAAATACGTCCTCACT 57.266 39.130 0.00 0.00 43.44 3.41
97 98 6.839124 TGTAGGAAAAATACGTCCTCACTA 57.161 37.500 0.00 0.00 43.44 2.74
98 99 7.230849 TGTAGGAAAAATACGTCCTCACTAA 57.769 36.000 0.00 0.00 43.44 2.24
99 100 7.318141 TGTAGGAAAAATACGTCCTCACTAAG 58.682 38.462 0.00 0.00 43.44 2.18
100 101 6.356186 AGGAAAAATACGTCCTCACTAAGT 57.644 37.500 0.00 0.00 40.38 2.24
101 102 7.472334 AGGAAAAATACGTCCTCACTAAGTA 57.528 36.000 0.00 0.00 40.38 2.24
102 103 7.545489 AGGAAAAATACGTCCTCACTAAGTAG 58.455 38.462 0.00 0.00 40.38 2.57
103 104 7.178097 AGGAAAAATACGTCCTCACTAAGTAGT 59.822 37.037 0.00 0.00 40.38 2.73
104 105 8.462016 GGAAAAATACGTCCTCACTAAGTAGTA 58.538 37.037 0.00 0.00 34.13 1.82
105 106 9.500864 GAAAAATACGTCCTCACTAAGTAGTAG 57.499 37.037 0.00 0.00 34.13 2.57
106 107 6.616774 AATACGTCCTCACTAAGTAGTAGC 57.383 41.667 0.00 0.00 34.13 3.58
107 108 4.219264 ACGTCCTCACTAAGTAGTAGCT 57.781 45.455 0.00 0.00 34.13 3.32
108 109 5.350504 ACGTCCTCACTAAGTAGTAGCTA 57.649 43.478 0.00 0.00 34.13 3.32
109 110 5.738909 ACGTCCTCACTAAGTAGTAGCTAA 58.261 41.667 0.00 0.00 34.13 3.09
110 111 6.176183 ACGTCCTCACTAAGTAGTAGCTAAA 58.824 40.000 0.00 0.00 34.13 1.85
111 112 6.656693 ACGTCCTCACTAAGTAGTAGCTAAAA 59.343 38.462 0.00 0.00 34.13 1.52
112 113 7.338957 ACGTCCTCACTAAGTAGTAGCTAAAAT 59.661 37.037 0.00 0.00 34.13 1.82
113 114 8.834465 CGTCCTCACTAAGTAGTAGCTAAAATA 58.166 37.037 0.00 0.00 34.13 1.40
148 149 8.149973 ACTACTATTACCAACAATAATTGCGG 57.850 34.615 0.00 0.00 33.84 5.69
149 150 7.771826 ACTACTATTACCAACAATAATTGCGGT 59.228 33.333 0.00 0.00 41.21 5.68
150 151 7.399245 ACTATTACCAACAATAATTGCGGTT 57.601 32.000 0.00 0.00 39.59 4.44
151 152 7.832769 ACTATTACCAACAATAATTGCGGTTT 58.167 30.769 0.00 0.00 39.59 3.27
152 153 8.308207 ACTATTACCAACAATAATTGCGGTTTT 58.692 29.630 0.00 0.00 39.59 2.43
153 154 9.790389 CTATTACCAACAATAATTGCGGTTTTA 57.210 29.630 0.00 0.00 39.59 1.52
155 156 9.660180 ATTACCAACAATAATTGCGGTTTTATT 57.340 25.926 0.00 0.00 39.59 1.40
156 157 7.971183 ACCAACAATAATTGCGGTTTTATTT 57.029 28.000 0.00 0.00 36.63 1.40
157 158 8.384607 ACCAACAATAATTGCGGTTTTATTTT 57.615 26.923 0.00 0.00 36.63 1.82
158 159 8.841300 ACCAACAATAATTGCGGTTTTATTTTT 58.159 25.926 0.00 0.00 36.63 1.94
182 183 8.568676 TTTTCGATGTGTAGATTAAATTGGGA 57.431 30.769 0.00 0.00 0.00 4.37
183 184 7.548196 TTCGATGTGTAGATTAAATTGGGAC 57.452 36.000 0.00 0.00 0.00 4.46
184 185 6.884832 TCGATGTGTAGATTAAATTGGGACT 58.115 36.000 0.00 0.00 0.00 3.85
185 186 8.014070 TCGATGTGTAGATTAAATTGGGACTA 57.986 34.615 0.00 0.00 0.00 2.59
186 187 8.141909 TCGATGTGTAGATTAAATTGGGACTAG 58.858 37.037 0.00 0.00 0.00 2.57
187 188 8.141909 CGATGTGTAGATTAAATTGGGACTAGA 58.858 37.037 0.00 0.00 0.00 2.43
188 189 9.262358 GATGTGTAGATTAAATTGGGACTAGAC 57.738 37.037 0.00 0.00 0.00 2.59
189 190 8.375493 TGTGTAGATTAAATTGGGACTAGACT 57.625 34.615 0.00 0.00 0.00 3.24
190 191 8.475639 TGTGTAGATTAAATTGGGACTAGACTC 58.524 37.037 0.00 0.00 0.00 3.36
191 192 8.697292 GTGTAGATTAAATTGGGACTAGACTCT 58.303 37.037 0.00 0.00 0.00 3.24
192 193 9.268282 TGTAGATTAAATTGGGACTAGACTCTT 57.732 33.333 0.00 0.00 0.00 2.85
201 202 9.838339 AATTGGGACTAGACTCTTTATTACATG 57.162 33.333 0.00 0.00 0.00 3.21
202 203 8.603898 TTGGGACTAGACTCTTTATTACATGA 57.396 34.615 0.00 0.00 0.00 3.07
203 204 8.783660 TGGGACTAGACTCTTTATTACATGAT 57.216 34.615 0.00 0.00 0.00 2.45
204 205 9.877222 TGGGACTAGACTCTTTATTACATGATA 57.123 33.333 0.00 0.00 0.00 2.15
240 241 9.809096 TGCAAATTTGAAATGTGTTAACTTAGA 57.191 25.926 22.31 0.00 0.00 2.10
264 265 9.762933 AGACATAGAAGAAATCTCAAATAGCTC 57.237 33.333 0.00 0.00 39.71 4.09
265 266 9.539825 GACATAGAAGAAATCTCAAATAGCTCA 57.460 33.333 0.00 0.00 39.71 4.26
266 267 9.896645 ACATAGAAGAAATCTCAAATAGCTCAA 57.103 29.630 0.00 0.00 39.71 3.02
269 270 7.705214 AGAAGAAATCTCAAATAGCTCAATGC 58.295 34.615 0.00 0.00 36.17 3.56
270 271 7.466996 AGAAGAAATCTCAAATAGCTCAATGCG 60.467 37.037 0.00 0.00 39.74 4.73
281 282 3.375911 GCTCAATGCGTTGACTTAGAC 57.624 47.619 17.41 1.72 39.36 2.59
282 283 2.736721 GCTCAATGCGTTGACTTAGACA 59.263 45.455 17.41 0.00 39.36 3.41
283 284 3.372206 GCTCAATGCGTTGACTTAGACAT 59.628 43.478 17.41 0.00 39.36 3.06
284 285 4.566759 GCTCAATGCGTTGACTTAGACATA 59.433 41.667 17.41 0.00 39.36 2.29
285 286 5.500931 GCTCAATGCGTTGACTTAGACATAC 60.501 44.000 17.41 0.00 39.36 2.39
286 287 5.474825 TCAATGCGTTGACTTAGACATACA 58.525 37.500 17.41 0.00 39.36 2.29
287 288 5.929415 TCAATGCGTTGACTTAGACATACAA 59.071 36.000 17.41 0.00 39.36 2.41
288 289 6.425417 TCAATGCGTTGACTTAGACATACAAA 59.575 34.615 17.41 0.00 39.36 2.83
289 290 6.795098 ATGCGTTGACTTAGACATACAAAA 57.205 33.333 0.00 0.00 0.00 2.44
290 291 6.606234 TGCGTTGACTTAGACATACAAAAA 57.394 33.333 0.00 0.00 0.00 1.94
291 292 7.197071 TGCGTTGACTTAGACATACAAAAAT 57.803 32.000 0.00 0.00 0.00 1.82
292 293 7.295201 TGCGTTGACTTAGACATACAAAAATC 58.705 34.615 0.00 0.00 0.00 2.17
293 294 7.172532 TGCGTTGACTTAGACATACAAAAATCT 59.827 33.333 0.00 0.00 0.00 2.40
294 295 7.688578 GCGTTGACTTAGACATACAAAAATCTC 59.311 37.037 0.00 0.00 0.00 2.75
295 296 8.708742 CGTTGACTTAGACATACAAAAATCTCA 58.291 33.333 0.00 0.00 0.00 3.27
298 299 9.554395 TGACTTAGACATACAAAAATCTCAACA 57.446 29.630 0.00 0.00 0.00 3.33
309 310 8.006298 ACAAAAATCTCAACAACTTATGTCCA 57.994 30.769 0.00 0.00 42.99 4.02
310 311 8.474025 ACAAAAATCTCAACAACTTATGTCCAA 58.526 29.630 0.00 0.00 42.99 3.53
311 312 8.755018 CAAAAATCTCAACAACTTATGTCCAAC 58.245 33.333 0.00 0.00 42.99 3.77
312 313 7.581213 AAATCTCAACAACTTATGTCCAACA 57.419 32.000 0.00 0.00 42.99 3.33
313 314 7.581213 AATCTCAACAACTTATGTCCAACAA 57.419 32.000 0.00 0.00 42.99 2.83
314 315 7.765695 ATCTCAACAACTTATGTCCAACAAT 57.234 32.000 0.00 0.00 42.99 2.71
315 316 7.581213 TCTCAACAACTTATGTCCAACAATT 57.419 32.000 0.00 0.00 42.99 2.32
316 317 7.648142 TCTCAACAACTTATGTCCAACAATTC 58.352 34.615 0.00 0.00 42.99 2.17
317 318 6.744112 TCAACAACTTATGTCCAACAATTCC 58.256 36.000 0.00 0.00 42.99 3.01
318 319 6.549364 TCAACAACTTATGTCCAACAATTCCT 59.451 34.615 0.00 0.00 42.99 3.36
319 320 6.976934 ACAACTTATGTCCAACAATTCCTT 57.023 33.333 0.00 0.00 37.96 3.36
320 321 8.356657 CAACAACTTATGTCCAACAATTCCTTA 58.643 33.333 0.00 0.00 42.99 2.69
321 322 8.472007 ACAACTTATGTCCAACAATTCCTTAA 57.528 30.769 0.00 0.00 37.96 1.85
322 323 8.576442 ACAACTTATGTCCAACAATTCCTTAAG 58.424 33.333 0.00 0.00 37.96 1.85
323 324 7.158099 ACTTATGTCCAACAATTCCTTAAGC 57.842 36.000 0.00 0.00 0.00 3.09
324 325 6.948309 ACTTATGTCCAACAATTCCTTAAGCT 59.052 34.615 0.00 0.00 0.00 3.74
325 326 7.451566 ACTTATGTCCAACAATTCCTTAAGCTT 59.548 33.333 3.48 3.48 0.00 3.74
326 327 6.670695 ATGTCCAACAATTCCTTAAGCTTT 57.329 33.333 3.20 0.00 0.00 3.51
327 328 7.775053 ATGTCCAACAATTCCTTAAGCTTTA 57.225 32.000 3.20 0.00 0.00 1.85
328 329 7.214467 TGTCCAACAATTCCTTAAGCTTTAG 57.786 36.000 3.20 4.54 0.00 1.85
329 330 7.001674 TGTCCAACAATTCCTTAAGCTTTAGA 58.998 34.615 13.93 1.51 0.00 2.10
330 331 7.669722 TGTCCAACAATTCCTTAAGCTTTAGAT 59.330 33.333 13.93 0.00 0.00 1.98
331 332 7.970614 GTCCAACAATTCCTTAAGCTTTAGATG 59.029 37.037 13.93 9.27 0.00 2.90
332 333 7.669722 TCCAACAATTCCTTAAGCTTTAGATGT 59.330 33.333 13.93 9.82 0.00 3.06
333 334 8.956426 CCAACAATTCCTTAAGCTTTAGATGTA 58.044 33.333 13.93 0.00 0.00 2.29
336 337 9.343539 ACAATTCCTTAAGCTTTAGATGTATCC 57.656 33.333 13.93 0.00 0.00 2.59
337 338 9.342308 CAATTCCTTAAGCTTTAGATGTATCCA 57.658 33.333 13.93 0.00 0.00 3.41
338 339 8.910351 ATTCCTTAAGCTTTAGATGTATCCAC 57.090 34.615 13.93 0.00 0.00 4.02
339 340 7.676683 TCCTTAAGCTTTAGATGTATCCACT 57.323 36.000 13.93 0.00 0.00 4.00
340 341 8.090788 TCCTTAAGCTTTAGATGTATCCACTT 57.909 34.615 13.93 0.00 0.00 3.16
341 342 7.987458 TCCTTAAGCTTTAGATGTATCCACTTG 59.013 37.037 13.93 0.00 0.00 3.16
342 343 7.227512 CCTTAAGCTTTAGATGTATCCACTTGG 59.772 40.741 13.93 0.00 0.00 3.61
343 344 5.700402 AGCTTTAGATGTATCCACTTGGT 57.300 39.130 0.00 0.00 36.34 3.67
344 345 5.675538 AGCTTTAGATGTATCCACTTGGTC 58.324 41.667 0.00 0.00 36.34 4.02
345 346 5.426833 AGCTTTAGATGTATCCACTTGGTCT 59.573 40.000 0.00 0.00 36.34 3.85
346 347 6.611642 AGCTTTAGATGTATCCACTTGGTCTA 59.388 38.462 0.00 0.00 36.34 2.59
347 348 7.125811 AGCTTTAGATGTATCCACTTGGTCTAA 59.874 37.037 0.00 0.00 36.34 2.10
348 349 7.934120 GCTTTAGATGTATCCACTTGGTCTAAT 59.066 37.037 6.26 0.00 36.34 1.73
349 350 9.838339 CTTTAGATGTATCCACTTGGTCTAATT 57.162 33.333 6.26 0.00 36.34 1.40
353 354 8.938883 AGATGTATCCACTTGGTCTAATTATGT 58.061 33.333 0.00 0.00 36.34 2.29
354 355 9.209175 GATGTATCCACTTGGTCTAATTATGTC 57.791 37.037 0.00 0.00 36.34 3.06
355 356 7.506114 TGTATCCACTTGGTCTAATTATGTCC 58.494 38.462 0.00 0.00 36.34 4.02
356 357 6.831664 ATCCACTTGGTCTAATTATGTCCT 57.168 37.500 0.00 0.00 36.34 3.85
357 358 7.931015 ATCCACTTGGTCTAATTATGTCCTA 57.069 36.000 0.00 0.00 36.34 2.94
358 359 7.931015 TCCACTTGGTCTAATTATGTCCTAT 57.069 36.000 0.00 0.00 36.34 2.57
359 360 7.735917 TCCACTTGGTCTAATTATGTCCTATG 58.264 38.462 0.00 0.00 36.34 2.23
360 361 6.428159 CCACTTGGTCTAATTATGTCCTATGC 59.572 42.308 0.00 0.00 0.00 3.14
361 362 7.220030 CACTTGGTCTAATTATGTCCTATGCT 58.780 38.462 0.00 0.00 0.00 3.79
362 363 7.386299 CACTTGGTCTAATTATGTCCTATGCTC 59.614 40.741 0.00 0.00 0.00 4.26
363 364 6.994421 TGGTCTAATTATGTCCTATGCTCA 57.006 37.500 0.00 0.00 0.00 4.26
364 365 6.997655 TGGTCTAATTATGTCCTATGCTCAG 58.002 40.000 0.00 0.00 0.00 3.35
365 366 6.014242 TGGTCTAATTATGTCCTATGCTCAGG 60.014 42.308 0.00 0.00 37.00 3.86
366 367 6.402222 GTCTAATTATGTCCTATGCTCAGGG 58.598 44.000 4.58 0.00 36.26 4.45
367 368 4.647564 AATTATGTCCTATGCTCAGGGG 57.352 45.455 4.58 0.00 36.26 4.79
368 369 3.344535 TTATGTCCTATGCTCAGGGGA 57.655 47.619 4.58 0.00 36.26 4.81
369 370 1.727062 ATGTCCTATGCTCAGGGGAG 58.273 55.000 4.58 0.00 44.33 4.30
370 371 0.399091 TGTCCTATGCTCAGGGGAGG 60.399 60.000 4.58 0.00 41.67 4.30
371 372 1.460305 TCCTATGCTCAGGGGAGGC 60.460 63.158 4.58 0.00 41.67 4.70
372 373 2.739784 CTATGCTCAGGGGAGGCG 59.260 66.667 0.00 0.00 41.67 5.52
373 374 1.834378 CTATGCTCAGGGGAGGCGA 60.834 63.158 0.00 0.00 41.67 5.54
374 375 1.814772 CTATGCTCAGGGGAGGCGAG 61.815 65.000 0.00 0.00 41.67 5.03
375 376 2.298335 TATGCTCAGGGGAGGCGAGA 62.298 60.000 0.00 0.00 41.67 4.04
376 377 3.535962 GCTCAGGGGAGGCGAGAG 61.536 72.222 0.00 0.00 41.67 3.20
377 378 2.837291 CTCAGGGGAGGCGAGAGG 60.837 72.222 0.00 0.00 37.51 3.69
378 379 3.670629 CTCAGGGGAGGCGAGAGGT 62.671 68.421 0.00 0.00 37.51 3.85
379 380 3.465403 CAGGGGAGGCGAGAGGTG 61.465 72.222 0.00 0.00 0.00 4.00
380 381 3.999285 AGGGGAGGCGAGAGGTGT 61.999 66.667 0.00 0.00 0.00 4.16
381 382 3.003763 GGGGAGGCGAGAGGTGTT 61.004 66.667 0.00 0.00 0.00 3.32
382 383 2.266055 GGGAGGCGAGAGGTGTTG 59.734 66.667 0.00 0.00 0.00 3.33
383 384 2.584391 GGGAGGCGAGAGGTGTTGT 61.584 63.158 0.00 0.00 0.00 3.32
384 385 1.255667 GGGAGGCGAGAGGTGTTGTA 61.256 60.000 0.00 0.00 0.00 2.41
385 386 0.824759 GGAGGCGAGAGGTGTTGTAT 59.175 55.000 0.00 0.00 0.00 2.29
386 387 1.471676 GGAGGCGAGAGGTGTTGTATG 60.472 57.143 0.00 0.00 0.00 2.39
387 388 1.476891 GAGGCGAGAGGTGTTGTATGA 59.523 52.381 0.00 0.00 0.00 2.15
388 389 1.478510 AGGCGAGAGGTGTTGTATGAG 59.521 52.381 0.00 0.00 0.00 2.90
389 390 1.281899 GCGAGAGGTGTTGTATGAGC 58.718 55.000 0.00 0.00 0.00 4.26
390 391 1.134965 GCGAGAGGTGTTGTATGAGCT 60.135 52.381 0.00 0.00 0.00 4.09
391 392 2.099263 GCGAGAGGTGTTGTATGAGCTA 59.901 50.000 0.00 0.00 0.00 3.32
392 393 3.696898 CGAGAGGTGTTGTATGAGCTAC 58.303 50.000 0.00 0.00 0.00 3.58
393 394 3.696898 GAGAGGTGTTGTATGAGCTACG 58.303 50.000 0.00 0.00 32.61 3.51
394 395 3.090037 AGAGGTGTTGTATGAGCTACGT 58.910 45.455 0.00 0.00 32.61 3.57
395 396 3.119459 AGAGGTGTTGTATGAGCTACGTG 60.119 47.826 0.00 0.00 32.61 4.49
396 397 1.659098 GGTGTTGTATGAGCTACGTGC 59.341 52.381 0.00 0.00 43.29 5.34
397 398 2.333926 GTGTTGTATGAGCTACGTGCA 58.666 47.619 0.00 0.00 45.94 4.57
398 399 2.734606 GTGTTGTATGAGCTACGTGCAA 59.265 45.455 0.00 0.00 45.94 4.08
399 400 2.993220 TGTTGTATGAGCTACGTGCAAG 59.007 45.455 0.00 0.00 45.94 4.01
421 422 4.405680 AGATACGTTGGGAGATCATGTTCA 59.594 41.667 6.55 0.00 0.00 3.18
434 435 7.148440 GGAGATCATGTTCAAAGAGTTCTTCAG 60.148 40.741 6.55 0.00 34.61 3.02
495 501 0.685097 TTGACAACGAGCTAGGCCTT 59.315 50.000 12.58 0.00 0.00 4.35
519 525 9.994432 CTTGATTTGGCTTACAAGTCTAATAAG 57.006 33.333 3.76 5.16 43.81 1.73
523 529 5.183228 TGGCTTACAAGTCTAATAAGTGCC 58.817 41.667 0.00 0.00 36.38 5.01
525 531 5.294552 GGCTTACAAGTCTAATAAGTGCCAG 59.705 44.000 0.00 0.00 35.94 4.85
562 569 5.759273 CCATTGAACATGTGGAAAAATGTGT 59.241 36.000 0.00 0.00 37.11 3.72
585 592 0.737804 GTGGTGCATGTTGTGTGTCA 59.262 50.000 0.00 0.00 0.00 3.58
700 707 9.708092 TCATCAAAATGATACAAAAGCAATGAA 57.292 25.926 0.00 0.00 36.98 2.57
714 721 1.682854 CAATGAACACACAACCAGGCT 59.317 47.619 0.00 0.00 0.00 4.58
724 731 1.352352 ACAACCAGGCTCTGCATAGTT 59.648 47.619 0.65 0.00 0.00 2.24
745 752 3.267597 GATGCACACGGCCAACACC 62.268 63.158 2.24 0.00 43.89 4.16
748 755 2.411290 CACACGGCCAACACCAAC 59.589 61.111 2.24 0.00 0.00 3.77
795 802 6.343226 GCAACTAGCAATGTGAAAACAAAA 57.657 33.333 0.00 0.00 44.79 2.44
796 803 6.413269 GCAACTAGCAATGTGAAAACAAAAG 58.587 36.000 0.00 0.00 44.79 2.27
797 804 6.255453 GCAACTAGCAATGTGAAAACAAAAGA 59.745 34.615 0.00 0.00 44.79 2.52
799 806 7.100458 ACTAGCAATGTGAAAACAAAAGACT 57.900 32.000 0.00 0.00 0.00 3.24
805 812 5.643379 TGTGAAAACAAAAGACTGAAGCT 57.357 34.783 0.00 0.00 0.00 3.74
840 847 9.031360 GTGGAGTAAAGAAAAATGAAAAACTCC 57.969 33.333 10.08 10.08 46.87 3.85
863 870 5.808540 CCGAGCAATCAAAACAATGATCAAT 59.191 36.000 0.00 0.00 39.08 2.57
894 901 3.255642 ACAACAACCATATCAGCACCAAC 59.744 43.478 0.00 0.00 0.00 3.77
903 910 5.455183 CCATATCAGCACCAACCATCTCTTA 60.455 44.000 0.00 0.00 0.00 2.10
926 933 2.565046 TCAGTTGTGATGTCATGCCA 57.435 45.000 0.00 0.00 0.00 4.92
932 939 3.002038 TGTGATGTCATGCCAGCATTA 57.998 42.857 0.00 0.00 32.72 1.90
975 982 8.669243 GTGCCAAATCTATGCCTATAAATAGAC 58.331 37.037 0.00 0.00 38.02 2.59
983 990 2.666994 GCCTATAAATAGACGCGCTTCC 59.333 50.000 10.66 0.00 32.05 3.46
1013 1023 5.008217 TGGCAAACAACAACTACATCTACAC 59.992 40.000 0.00 0.00 0.00 2.90
1014 1024 5.238650 GGCAAACAACAACTACATCTACACT 59.761 40.000 0.00 0.00 0.00 3.55
1015 1025 6.363473 GCAAACAACAACTACATCTACACTC 58.637 40.000 0.00 0.00 0.00 3.51
1036 1046 5.305644 ACTCCACTCCACTCCATAATCATAC 59.694 44.000 0.00 0.00 0.00 2.39
1062 1072 7.787935 CGAGATAAGTGATACAATTTTACGTGC 59.212 37.037 0.00 0.00 0.00 5.34
1118 1128 2.238521 GTGGCAATCCTTGTTCTCCAA 58.761 47.619 0.00 0.00 0.00 3.53
1127 1137 3.634397 CTTGTTCTCCAAGCCATCCTA 57.366 47.619 0.00 0.00 43.84 2.94
1288 1302 0.391228 GATGCCATGCCATGAATGCA 59.609 50.000 6.18 7.90 43.97 3.96
1309 1323 0.034089 GCAGCCAACTACTTCCCCAT 60.034 55.000 0.00 0.00 0.00 4.00
1310 1324 1.211949 GCAGCCAACTACTTCCCCATA 59.788 52.381 0.00 0.00 0.00 2.74
1317 1331 4.269183 CAACTACTTCCCCATATGTTGCA 58.731 43.478 1.24 0.00 0.00 4.08
1320 1334 2.091541 ACTTCCCCATATGTTGCAACG 58.908 47.619 23.79 9.92 0.00 4.10
1345 1359 1.539124 GGTCCTTCTCAGGGGTGGT 60.539 63.158 0.00 0.00 41.25 4.16
1427 1441 0.518636 CGGGCAGTGTCAAGATGTTG 59.481 55.000 0.00 0.00 34.67 3.33
1538 1554 5.112686 TGTGTTTCGCCAAAAATAAAGCTT 58.887 33.333 0.00 0.00 0.00 3.74
1561 1577 5.563876 AGATGATATGAGCATTGTCACCT 57.436 39.130 0.00 0.00 0.00 4.00
1570 1587 6.403866 TGAGCATTGTCACCTTATTTGTTT 57.596 33.333 0.00 0.00 0.00 2.83
1608 1625 1.819928 TGCACGCCAACAATACATCT 58.180 45.000 0.00 0.00 0.00 2.90
1643 1664 0.025001 GTCATTTCGTCGTCGCCATG 59.975 55.000 0.00 2.43 36.96 3.66
1695 1716 3.166489 AGTCTATTGTTGCTCGCCTAC 57.834 47.619 0.00 0.00 0.00 3.18
1907 1929 2.132740 TTGTTTGCAACATTCCGAGC 57.867 45.000 0.00 0.00 41.79 5.03
1908 1930 1.028130 TGTTTGCAACATTCCGAGCA 58.972 45.000 0.00 0.00 36.25 4.26
1929 1952 4.217983 GCACTCAGGTTATAGGTAGCGTAT 59.782 45.833 0.00 0.00 0.00 3.06
2033 2076 6.551601 ACAATTTTCCACATGTAACACCCTTA 59.448 34.615 0.00 0.00 0.00 2.69
2036 2079 5.570205 TTCCACATGTAACACCCTTAAGA 57.430 39.130 3.36 0.00 0.00 2.10
2073 2116 1.821216 CCCCCACACACACATAACTC 58.179 55.000 0.00 0.00 0.00 3.01
2074 2117 1.351017 CCCCCACACACACATAACTCT 59.649 52.381 0.00 0.00 0.00 3.24
2075 2118 2.615493 CCCCCACACACACATAACTCTC 60.615 54.545 0.00 0.00 0.00 3.20
2076 2119 2.303022 CCCCACACACACATAACTCTCT 59.697 50.000 0.00 0.00 0.00 3.10
2077 2120 3.589988 CCCACACACACATAACTCTCTC 58.410 50.000 0.00 0.00 0.00 3.20
2078 2121 3.006859 CCCACACACACATAACTCTCTCA 59.993 47.826 0.00 0.00 0.00 3.27
2092 2262 9.409312 CATAACTCTCTCACTCATTCATACATC 57.591 37.037 0.00 0.00 0.00 3.06
2093 2263 7.415592 AACTCTCTCACTCATTCATACATCA 57.584 36.000 0.00 0.00 0.00 3.07
2162 2426 1.217244 GAGGTGTGTCGGCGGTAAT 59.783 57.895 7.21 0.00 0.00 1.89
2178 2442 1.065854 GTAATGACCTGCTGCAGACCT 60.066 52.381 30.10 12.26 32.44 3.85
2201 2465 1.198759 GCTGGAAGGTAGGGTGTGGA 61.199 60.000 0.00 0.00 0.00 4.02
2208 2472 0.034477 GGTAGGGTGTGGATGTTGGG 60.034 60.000 0.00 0.00 0.00 4.12
2210 2474 0.476808 TAGGGTGTGGATGTTGGGGT 60.477 55.000 0.00 0.00 0.00 4.95
2218 2482 0.467290 GGATGTTGGGGTGTGTGTGT 60.467 55.000 0.00 0.00 0.00 3.72
2242 2506 4.598036 AAATCCAAGTGAGGGATGACAT 57.402 40.909 0.00 0.00 44.30 3.06
2259 2523 3.208594 GACATATGCCAAGATGCTCACA 58.791 45.455 1.58 0.00 0.00 3.58
2262 2526 4.142315 ACATATGCCAAGATGCTCACAAAC 60.142 41.667 1.58 0.00 0.00 2.93
2264 2528 0.593128 GCCAAGATGCTCACAAACGT 59.407 50.000 0.00 0.00 0.00 3.99
2278 2542 0.317770 AAACGTCCTTGCATGCAACG 60.318 50.000 31.34 31.34 0.00 4.10
2318 2582 9.654663 GGGTAAATATCATCACTCAACTATACC 57.345 37.037 0.00 0.00 0.00 2.73
2409 2676 7.614494 TCTTGAAGACATTGACACTATGATGA 58.386 34.615 0.00 0.00 0.00 2.92
2410 2677 8.262933 TCTTGAAGACATTGACACTATGATGAT 58.737 33.333 0.00 0.00 0.00 2.45
2422 2689 6.718294 ACACTATGATGATGATACCATGCAT 58.282 36.000 0.00 0.00 32.09 3.96
2432 2699 0.544223 TACCATGCATAAGGTGGCGT 59.456 50.000 16.93 0.00 38.87 5.68
2483 2750 1.747355 GGCAGTGACCCAAAGATGATG 59.253 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.739039 CCATTCAAAGTTTTATGACATGGTAGA 58.261 33.333 0.00 0.00 33.88 2.59
4 5 8.739039 TCCATTCAAAGTTTTATGACATGGTAG 58.261 33.333 0.00 0.00 36.58 3.18
5 6 8.642935 TCCATTCAAAGTTTTATGACATGGTA 57.357 30.769 0.00 0.00 36.58 3.25
6 7 7.537596 TCCATTCAAAGTTTTATGACATGGT 57.462 32.000 0.00 0.00 36.58 3.55
7 8 8.090214 ACTTCCATTCAAAGTTTTATGACATGG 58.910 33.333 0.00 8.77 36.56 3.66
8 9 9.480053 AACTTCCATTCAAAGTTTTATGACATG 57.520 29.630 0.00 0.00 42.74 3.21
9 10 9.696917 GAACTTCCATTCAAAGTTTTATGACAT 57.303 29.630 8.41 0.00 44.72 3.06
10 11 8.690884 TGAACTTCCATTCAAAGTTTTATGACA 58.309 29.630 8.41 0.00 44.72 3.58
11 12 9.696917 ATGAACTTCCATTCAAAGTTTTATGAC 57.303 29.630 8.41 0.00 44.72 3.06
16 17 9.696917 GATGTATGAACTTCCATTCAAAGTTTT 57.303 29.630 3.07 0.00 44.72 2.43
17 18 8.859090 TGATGTATGAACTTCCATTCAAAGTTT 58.141 29.630 3.07 0.00 44.72 2.66
18 19 8.408043 TGATGTATGAACTTCCATTCAAAGTT 57.592 30.769 1.14 1.14 46.74 2.66
19 20 8.585471 ATGATGTATGAACTTCCATTCAAAGT 57.415 30.769 0.00 0.00 41.78 2.66
20 21 9.941664 GTATGATGTATGAACTTCCATTCAAAG 57.058 33.333 0.00 0.00 41.78 2.77
21 22 9.460019 TGTATGATGTATGAACTTCCATTCAAA 57.540 29.630 0.00 0.00 41.78 2.69
22 23 8.892723 GTGTATGATGTATGAACTTCCATTCAA 58.107 33.333 0.00 0.00 41.78 2.69
23 24 8.267183 AGTGTATGATGTATGAACTTCCATTCA 58.733 33.333 0.00 0.00 42.62 2.57
24 25 8.668510 AGTGTATGATGTATGAACTTCCATTC 57.331 34.615 0.00 0.00 0.00 2.67
25 26 9.770097 CTAGTGTATGATGTATGAACTTCCATT 57.230 33.333 0.00 0.00 0.00 3.16
26 27 9.147732 TCTAGTGTATGATGTATGAACTTCCAT 57.852 33.333 0.00 0.00 0.00 3.41
27 28 8.533569 TCTAGTGTATGATGTATGAACTTCCA 57.466 34.615 0.00 0.00 0.00 3.53
28 29 9.988815 ATTCTAGTGTATGATGTATGAACTTCC 57.011 33.333 0.00 0.00 0.00 3.46
58 59 8.533569 TTTTCCTACAATGAAAGTTCTCCTTT 57.466 30.769 0.00 0.00 46.11 3.11
59 60 8.533569 TTTTTCCTACAATGAAAGTTCTCCTT 57.466 30.769 0.00 0.00 33.58 3.36
60 61 8.712228 ATTTTTCCTACAATGAAAGTTCTCCT 57.288 30.769 0.00 0.00 33.58 3.69
61 62 9.841880 GTATTTTTCCTACAATGAAAGTTCTCC 57.158 33.333 0.00 0.00 33.58 3.71
62 63 9.543018 CGTATTTTTCCTACAATGAAAGTTCTC 57.457 33.333 0.00 0.00 33.58 2.87
63 64 9.063615 ACGTATTTTTCCTACAATGAAAGTTCT 57.936 29.630 0.00 0.00 33.58 3.01
64 65 9.326339 GACGTATTTTTCCTACAATGAAAGTTC 57.674 33.333 0.00 0.00 33.58 3.01
65 66 8.294577 GGACGTATTTTTCCTACAATGAAAGTT 58.705 33.333 0.00 0.00 33.58 2.66
66 67 7.664318 AGGACGTATTTTTCCTACAATGAAAGT 59.336 33.333 0.00 0.00 40.70 2.66
67 68 8.040716 AGGACGTATTTTTCCTACAATGAAAG 57.959 34.615 0.00 0.00 40.70 2.62
68 69 7.662258 TGAGGACGTATTTTTCCTACAATGAAA 59.338 33.333 0.00 0.00 42.68 2.69
69 70 7.118680 GTGAGGACGTATTTTTCCTACAATGAA 59.881 37.037 0.00 0.00 42.68 2.57
70 71 6.592607 GTGAGGACGTATTTTTCCTACAATGA 59.407 38.462 0.00 0.00 42.68 2.57
71 72 6.594159 AGTGAGGACGTATTTTTCCTACAATG 59.406 38.462 0.00 0.00 42.68 2.82
72 73 6.708285 AGTGAGGACGTATTTTTCCTACAAT 58.292 36.000 0.00 0.00 42.68 2.71
73 74 6.105397 AGTGAGGACGTATTTTTCCTACAA 57.895 37.500 0.00 0.00 42.68 2.41
74 75 5.733620 AGTGAGGACGTATTTTTCCTACA 57.266 39.130 0.00 0.00 42.68 2.74
75 76 7.318893 ACTTAGTGAGGACGTATTTTTCCTAC 58.681 38.462 0.00 0.00 42.68 3.18
76 77 7.472334 ACTTAGTGAGGACGTATTTTTCCTA 57.528 36.000 0.00 0.00 42.68 2.94
77 78 6.356186 ACTTAGTGAGGACGTATTTTTCCT 57.644 37.500 0.00 0.00 45.49 3.36
78 79 7.318893 ACTACTTAGTGAGGACGTATTTTTCC 58.681 38.462 0.00 0.00 34.72 3.13
79 80 9.500864 CTACTACTTAGTGAGGACGTATTTTTC 57.499 37.037 0.00 0.00 37.10 2.29
80 81 7.972832 GCTACTACTTAGTGAGGACGTATTTTT 59.027 37.037 0.00 0.00 37.10 1.94
81 82 7.338957 AGCTACTACTTAGTGAGGACGTATTTT 59.661 37.037 0.00 0.00 37.10 1.82
82 83 6.827762 AGCTACTACTTAGTGAGGACGTATTT 59.172 38.462 0.00 0.00 37.10 1.40
83 84 6.355747 AGCTACTACTTAGTGAGGACGTATT 58.644 40.000 0.00 0.00 37.10 1.89
84 85 5.927819 AGCTACTACTTAGTGAGGACGTAT 58.072 41.667 0.00 0.00 37.10 3.06
85 86 5.350504 AGCTACTACTTAGTGAGGACGTA 57.649 43.478 0.00 0.00 37.10 3.57
86 87 4.219264 AGCTACTACTTAGTGAGGACGT 57.781 45.455 0.00 0.00 37.10 4.34
87 88 6.674694 TTTAGCTACTACTTAGTGAGGACG 57.325 41.667 0.00 0.00 37.10 4.79
122 123 9.263538 CCGCAATTATTGTTGGTAATAGTAGTA 57.736 33.333 6.81 0.00 0.00 1.82
123 124 7.771826 ACCGCAATTATTGTTGGTAATAGTAGT 59.228 33.333 17.80 0.00 38.94 2.73
124 125 8.149973 ACCGCAATTATTGTTGGTAATAGTAG 57.850 34.615 17.80 0.00 38.94 2.57
125 126 8.508883 AACCGCAATTATTGTTGGTAATAGTA 57.491 30.769 18.97 0.00 39.51 1.82
126 127 7.399245 AACCGCAATTATTGTTGGTAATAGT 57.601 32.000 18.97 5.90 39.51 2.12
127 128 8.696410 AAAACCGCAATTATTGTTGGTAATAG 57.304 30.769 18.97 0.00 39.51 1.73
129 130 9.660180 AATAAAACCGCAATTATTGTTGGTAAT 57.340 25.926 18.97 14.49 39.51 1.89
130 131 9.490379 AAATAAAACCGCAATTATTGTTGGTAA 57.510 25.926 18.97 11.35 39.51 2.85
131 132 9.490379 AAAATAAAACCGCAATTATTGTTGGTA 57.510 25.926 18.97 8.74 39.51 3.25
132 133 7.971183 AAATAAAACCGCAATTATTGTTGGT 57.029 28.000 14.94 14.94 41.27 3.67
156 157 9.015367 TCCCAATTTAATCTACACATCGAAAAA 57.985 29.630 0.00 0.00 0.00 1.94
157 158 8.455682 GTCCCAATTTAATCTACACATCGAAAA 58.544 33.333 0.00 0.00 0.00 2.29
158 159 7.827236 AGTCCCAATTTAATCTACACATCGAAA 59.173 33.333 0.00 0.00 0.00 3.46
159 160 7.335627 AGTCCCAATTTAATCTACACATCGAA 58.664 34.615 0.00 0.00 0.00 3.71
160 161 6.884832 AGTCCCAATTTAATCTACACATCGA 58.115 36.000 0.00 0.00 0.00 3.59
161 162 8.141909 TCTAGTCCCAATTTAATCTACACATCG 58.858 37.037 0.00 0.00 0.00 3.84
162 163 9.262358 GTCTAGTCCCAATTTAATCTACACATC 57.738 37.037 0.00 0.00 0.00 3.06
163 164 8.993424 AGTCTAGTCCCAATTTAATCTACACAT 58.007 33.333 0.00 0.00 0.00 3.21
164 165 8.375493 AGTCTAGTCCCAATTTAATCTACACA 57.625 34.615 0.00 0.00 0.00 3.72
165 166 8.697292 AGAGTCTAGTCCCAATTTAATCTACAC 58.303 37.037 0.00 0.00 0.00 2.90
166 167 8.840200 AGAGTCTAGTCCCAATTTAATCTACA 57.160 34.615 0.00 0.00 0.00 2.74
175 176 9.838339 CATGTAATAAAGAGTCTAGTCCCAATT 57.162 33.333 0.00 0.00 0.00 2.32
176 177 9.213777 TCATGTAATAAAGAGTCTAGTCCCAAT 57.786 33.333 0.00 0.00 0.00 3.16
177 178 8.603898 TCATGTAATAAAGAGTCTAGTCCCAA 57.396 34.615 0.00 0.00 0.00 4.12
178 179 8.783660 ATCATGTAATAAAGAGTCTAGTCCCA 57.216 34.615 0.00 0.00 0.00 4.37
214 215 9.809096 TCTAAGTTAACACATTTCAAATTTGCA 57.191 25.926 13.54 0.00 0.00 4.08
238 239 9.762933 GAGCTATTTGAGATTTCTTCTATGTCT 57.237 33.333 0.00 0.00 33.74 3.41
239 240 9.539825 TGAGCTATTTGAGATTTCTTCTATGTC 57.460 33.333 0.00 0.00 33.74 3.06
240 241 9.896645 TTGAGCTATTTGAGATTTCTTCTATGT 57.103 29.630 0.00 0.00 33.74 2.29
243 244 8.834465 GCATTGAGCTATTTGAGATTTCTTCTA 58.166 33.333 0.00 0.00 41.15 2.10
244 245 7.466996 CGCATTGAGCTATTTGAGATTTCTTCT 60.467 37.037 0.00 0.00 42.61 2.85
245 246 6.632035 CGCATTGAGCTATTTGAGATTTCTTC 59.368 38.462 0.00 0.00 42.61 2.87
246 247 6.094603 ACGCATTGAGCTATTTGAGATTTCTT 59.905 34.615 0.00 0.00 42.61 2.52
247 248 5.587844 ACGCATTGAGCTATTTGAGATTTCT 59.412 36.000 0.00 0.00 42.61 2.52
248 249 5.814783 ACGCATTGAGCTATTTGAGATTTC 58.185 37.500 0.00 0.00 42.61 2.17
249 250 5.824904 ACGCATTGAGCTATTTGAGATTT 57.175 34.783 0.00 0.00 42.61 2.17
250 251 5.355071 TCAACGCATTGAGCTATTTGAGATT 59.645 36.000 0.00 0.00 40.01 2.40
251 252 4.877823 TCAACGCATTGAGCTATTTGAGAT 59.122 37.500 0.00 0.00 40.01 2.75
252 253 4.093408 GTCAACGCATTGAGCTATTTGAGA 59.907 41.667 0.00 0.00 45.58 3.27
253 254 4.093998 AGTCAACGCATTGAGCTATTTGAG 59.906 41.667 0.00 0.00 45.58 3.02
254 255 4.002982 AGTCAACGCATTGAGCTATTTGA 58.997 39.130 0.00 0.00 45.58 2.69
255 256 4.346734 AGTCAACGCATTGAGCTATTTG 57.653 40.909 0.00 0.00 45.58 2.32
256 257 5.874810 TCTAAGTCAACGCATTGAGCTATTT 59.125 36.000 0.00 0.00 45.58 1.40
257 258 5.292101 GTCTAAGTCAACGCATTGAGCTATT 59.708 40.000 0.00 0.00 45.58 1.73
258 259 4.806247 GTCTAAGTCAACGCATTGAGCTAT 59.194 41.667 0.00 0.00 45.58 2.97
259 260 4.174009 GTCTAAGTCAACGCATTGAGCTA 58.826 43.478 0.00 0.00 45.58 3.32
260 261 2.996621 GTCTAAGTCAACGCATTGAGCT 59.003 45.455 0.00 0.00 45.58 4.09
261 262 2.736721 TGTCTAAGTCAACGCATTGAGC 59.263 45.455 0.00 0.00 45.58 4.26
262 263 5.576774 TGTATGTCTAAGTCAACGCATTGAG 59.423 40.000 0.00 0.00 45.58 3.02
263 264 5.474825 TGTATGTCTAAGTCAACGCATTGA 58.525 37.500 0.00 0.00 42.73 2.57
264 265 5.778161 TGTATGTCTAAGTCAACGCATTG 57.222 39.130 0.00 0.00 37.14 2.82
265 266 6.795098 TTTGTATGTCTAAGTCAACGCATT 57.205 33.333 0.00 0.00 0.00 3.56
266 267 6.795098 TTTTGTATGTCTAAGTCAACGCAT 57.205 33.333 0.00 0.00 0.00 4.73
267 268 6.606234 TTTTTGTATGTCTAAGTCAACGCA 57.394 33.333 0.00 0.00 0.00 5.24
268 269 7.519002 AGATTTTTGTATGTCTAAGTCAACGC 58.481 34.615 0.00 0.00 0.00 4.84
269 270 8.708742 TGAGATTTTTGTATGTCTAAGTCAACG 58.291 33.333 0.00 0.00 0.00 4.10
272 273 9.554395 TGTTGAGATTTTTGTATGTCTAAGTCA 57.446 29.630 0.00 0.00 0.00 3.41
283 284 9.126151 TGGACATAAGTTGTTGAGATTTTTGTA 57.874 29.630 0.00 0.00 39.18 2.41
284 285 8.006298 TGGACATAAGTTGTTGAGATTTTTGT 57.994 30.769 0.00 0.00 39.18 2.83
285 286 8.755018 GTTGGACATAAGTTGTTGAGATTTTTG 58.245 33.333 0.00 0.00 39.18 2.44
286 287 8.474025 TGTTGGACATAAGTTGTTGAGATTTTT 58.526 29.630 0.00 0.00 39.18 1.94
287 288 8.006298 TGTTGGACATAAGTTGTTGAGATTTT 57.994 30.769 0.00 0.00 39.18 1.82
288 289 7.581213 TGTTGGACATAAGTTGTTGAGATTT 57.419 32.000 0.00 0.00 39.18 2.17
289 290 7.581213 TTGTTGGACATAAGTTGTTGAGATT 57.419 32.000 0.00 0.00 39.18 2.40
290 291 7.765695 ATTGTTGGACATAAGTTGTTGAGAT 57.234 32.000 0.00 0.00 39.18 2.75
291 292 7.255451 GGAATTGTTGGACATAAGTTGTTGAGA 60.255 37.037 0.00 0.00 39.18 3.27
292 293 6.863126 GGAATTGTTGGACATAAGTTGTTGAG 59.137 38.462 0.00 0.00 39.18 3.02
293 294 6.549364 AGGAATTGTTGGACATAAGTTGTTGA 59.451 34.615 0.00 0.00 39.18 3.18
294 295 6.748132 AGGAATTGTTGGACATAAGTTGTTG 58.252 36.000 0.00 0.00 39.18 3.33
295 296 6.976934 AGGAATTGTTGGACATAAGTTGTT 57.023 33.333 0.00 0.00 39.18 2.83
296 297 6.976934 AAGGAATTGTTGGACATAAGTTGT 57.023 33.333 0.00 0.00 42.79 3.32
297 298 7.542130 GCTTAAGGAATTGTTGGACATAAGTTG 59.458 37.037 4.29 0.00 0.00 3.16
298 299 7.451566 AGCTTAAGGAATTGTTGGACATAAGTT 59.548 33.333 4.29 0.00 0.00 2.66
299 300 6.948309 AGCTTAAGGAATTGTTGGACATAAGT 59.052 34.615 4.29 0.00 0.00 2.24
300 301 7.396540 AGCTTAAGGAATTGTTGGACATAAG 57.603 36.000 4.29 0.00 0.00 1.73
301 302 7.775053 AAGCTTAAGGAATTGTTGGACATAA 57.225 32.000 0.00 0.00 0.00 1.90
302 303 7.775053 AAAGCTTAAGGAATTGTTGGACATA 57.225 32.000 0.00 0.00 0.00 2.29
303 304 6.670695 AAAGCTTAAGGAATTGTTGGACAT 57.329 33.333 0.00 0.00 0.00 3.06
304 305 7.001674 TCTAAAGCTTAAGGAATTGTTGGACA 58.998 34.615 0.00 0.00 0.00 4.02
305 306 7.448748 TCTAAAGCTTAAGGAATTGTTGGAC 57.551 36.000 0.00 0.00 0.00 4.02
306 307 7.669722 ACATCTAAAGCTTAAGGAATTGTTGGA 59.330 33.333 0.00 0.00 0.00 3.53
307 308 7.830739 ACATCTAAAGCTTAAGGAATTGTTGG 58.169 34.615 0.00 0.00 0.00 3.77
310 311 9.343539 GGATACATCTAAAGCTTAAGGAATTGT 57.656 33.333 0.00 3.97 0.00 2.71
311 312 9.342308 TGGATACATCTAAAGCTTAAGGAATTG 57.658 33.333 0.00 0.00 46.17 2.32
331 332 7.736893 AGGACATAATTAGACCAAGTGGATAC 58.263 38.462 3.83 0.00 38.94 2.24
332 333 7.931015 AGGACATAATTAGACCAAGTGGATA 57.069 36.000 3.83 0.00 38.94 2.59
333 334 6.831664 AGGACATAATTAGACCAAGTGGAT 57.168 37.500 3.83 0.00 38.94 3.41
334 335 7.689313 GCATAGGACATAATTAGACCAAGTGGA 60.689 40.741 3.83 0.00 38.94 4.02
335 336 6.428159 GCATAGGACATAATTAGACCAAGTGG 59.572 42.308 0.00 0.00 42.17 4.00
336 337 7.220030 AGCATAGGACATAATTAGACCAAGTG 58.780 38.462 7.70 5.12 0.00 3.16
337 338 7.071196 TGAGCATAGGACATAATTAGACCAAGT 59.929 37.037 7.70 0.00 0.00 3.16
338 339 7.445121 TGAGCATAGGACATAATTAGACCAAG 58.555 38.462 7.70 0.00 0.00 3.61
339 340 7.373617 TGAGCATAGGACATAATTAGACCAA 57.626 36.000 7.70 0.00 0.00 3.67
340 341 6.014242 CCTGAGCATAGGACATAATTAGACCA 60.014 42.308 0.15 0.00 40.42 4.02
341 342 6.402222 CCTGAGCATAGGACATAATTAGACC 58.598 44.000 0.15 0.00 40.42 3.85
342 343 6.402222 CCCTGAGCATAGGACATAATTAGAC 58.598 44.000 7.76 0.00 40.42 2.59
343 344 5.485353 CCCCTGAGCATAGGACATAATTAGA 59.515 44.000 7.76 0.00 40.42 2.10
344 345 5.485353 TCCCCTGAGCATAGGACATAATTAG 59.515 44.000 7.76 0.00 40.42 1.73
345 346 5.411493 TCCCCTGAGCATAGGACATAATTA 58.589 41.667 7.76 0.00 40.42 1.40
346 347 4.242811 TCCCCTGAGCATAGGACATAATT 58.757 43.478 7.76 0.00 40.42 1.40
347 348 3.843027 CTCCCCTGAGCATAGGACATAAT 59.157 47.826 7.76 0.00 40.42 1.28
348 349 3.242867 CTCCCCTGAGCATAGGACATAA 58.757 50.000 7.76 0.00 40.42 1.90
349 350 2.493500 CCTCCCCTGAGCATAGGACATA 60.494 54.545 7.76 0.00 40.42 2.29
350 351 1.727062 CTCCCCTGAGCATAGGACAT 58.273 55.000 7.76 0.00 40.42 3.06
351 352 0.399091 CCTCCCCTGAGCATAGGACA 60.399 60.000 7.76 0.00 40.42 4.02
352 353 1.763546 GCCTCCCCTGAGCATAGGAC 61.764 65.000 7.76 0.00 40.42 3.85
353 354 1.460305 GCCTCCCCTGAGCATAGGA 60.460 63.158 7.76 0.00 40.42 2.94
354 355 2.876945 CGCCTCCCCTGAGCATAGG 61.877 68.421 0.00 0.00 37.29 2.57
355 356 1.814772 CTCGCCTCCCCTGAGCATAG 61.815 65.000 0.00 0.00 37.29 2.23
356 357 1.834378 CTCGCCTCCCCTGAGCATA 60.834 63.158 0.00 0.00 37.29 3.14
357 358 3.160047 CTCGCCTCCCCTGAGCAT 61.160 66.667 0.00 0.00 37.29 3.79
358 359 4.382541 TCTCGCCTCCCCTGAGCA 62.383 66.667 0.00 0.00 37.29 4.26
359 360 3.535962 CTCTCGCCTCCCCTGAGC 61.536 72.222 0.00 0.00 37.29 4.26
360 361 2.837291 CCTCTCGCCTCCCCTGAG 60.837 72.222 0.00 0.00 38.42 3.35
361 362 3.673597 ACCTCTCGCCTCCCCTGA 61.674 66.667 0.00 0.00 0.00 3.86
362 363 3.465403 CACCTCTCGCCTCCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
363 364 3.547787 AACACCTCTCGCCTCCCCT 62.548 63.158 0.00 0.00 0.00 4.79
364 365 3.003763 AACACCTCTCGCCTCCCC 61.004 66.667 0.00 0.00 0.00 4.81
365 366 1.255667 TACAACACCTCTCGCCTCCC 61.256 60.000 0.00 0.00 0.00 4.30
366 367 0.824759 ATACAACACCTCTCGCCTCC 59.175 55.000 0.00 0.00 0.00 4.30
367 368 1.476891 TCATACAACACCTCTCGCCTC 59.523 52.381 0.00 0.00 0.00 4.70
368 369 1.478510 CTCATACAACACCTCTCGCCT 59.521 52.381 0.00 0.00 0.00 5.52
369 370 1.927895 CTCATACAACACCTCTCGCC 58.072 55.000 0.00 0.00 0.00 5.54
370 371 1.134965 AGCTCATACAACACCTCTCGC 60.135 52.381 0.00 0.00 0.00 5.03
371 372 2.949451 AGCTCATACAACACCTCTCG 57.051 50.000 0.00 0.00 0.00 4.04
372 373 3.128938 ACGTAGCTCATACAACACCTCTC 59.871 47.826 0.00 0.00 33.65 3.20
373 374 3.090037 ACGTAGCTCATACAACACCTCT 58.910 45.455 0.00 0.00 33.65 3.69
374 375 3.179830 CACGTAGCTCATACAACACCTC 58.820 50.000 0.00 0.00 33.65 3.85
375 376 2.674177 GCACGTAGCTCATACAACACCT 60.674 50.000 0.00 0.00 41.15 4.00
376 377 1.659098 GCACGTAGCTCATACAACACC 59.341 52.381 0.00 0.00 41.15 4.16
377 378 2.333926 TGCACGTAGCTCATACAACAC 58.666 47.619 10.54 0.00 45.94 3.32
378 379 2.734276 TGCACGTAGCTCATACAACA 57.266 45.000 10.54 0.00 45.94 3.33
379 380 3.250744 TCTTGCACGTAGCTCATACAAC 58.749 45.455 10.54 0.00 45.94 3.32
380 381 3.586100 TCTTGCACGTAGCTCATACAA 57.414 42.857 10.54 0.00 45.94 2.41
381 382 3.801114 ATCTTGCACGTAGCTCATACA 57.199 42.857 10.54 0.00 45.94 2.29
382 383 3.664486 CGTATCTTGCACGTAGCTCATAC 59.336 47.826 10.54 11.23 45.94 2.39
383 384 3.885358 CGTATCTTGCACGTAGCTCATA 58.115 45.455 10.54 3.21 45.94 2.15
384 385 2.732366 CGTATCTTGCACGTAGCTCAT 58.268 47.619 10.54 3.94 45.94 2.90
385 386 2.188837 CGTATCTTGCACGTAGCTCA 57.811 50.000 10.54 0.00 45.94 4.26
392 393 0.999406 CTCCCAACGTATCTTGCACG 59.001 55.000 0.00 0.00 44.80 5.34
393 394 2.380084 TCTCCCAACGTATCTTGCAC 57.620 50.000 0.00 0.00 0.00 4.57
394 395 2.499693 TGATCTCCCAACGTATCTTGCA 59.500 45.455 0.00 0.00 0.00 4.08
395 396 3.179443 TGATCTCCCAACGTATCTTGC 57.821 47.619 0.00 0.00 0.00 4.01
396 397 4.697514 ACATGATCTCCCAACGTATCTTG 58.302 43.478 0.00 0.00 32.62 3.02
397 398 5.104941 TGAACATGATCTCCCAACGTATCTT 60.105 40.000 0.00 0.00 0.00 2.40
398 399 4.405680 TGAACATGATCTCCCAACGTATCT 59.594 41.667 0.00 0.00 0.00 1.98
399 400 4.693283 TGAACATGATCTCCCAACGTATC 58.307 43.478 0.00 0.00 0.00 2.24
421 422 6.809196 CGTCTATACTTGCTGAAGAACTCTTT 59.191 38.462 0.00 0.00 36.11 2.52
434 435 8.589335 TCAAAATTATCTCCGTCTATACTTGC 57.411 34.615 0.00 0.00 0.00 4.01
472 473 2.488153 GGCCTAGCTCGTTGTCAAAATT 59.512 45.455 0.00 0.00 0.00 1.82
473 474 2.084546 GGCCTAGCTCGTTGTCAAAAT 58.915 47.619 0.00 0.00 0.00 1.82
474 475 1.071699 AGGCCTAGCTCGTTGTCAAAA 59.928 47.619 1.29 0.00 0.00 2.44
475 476 0.685097 AGGCCTAGCTCGTTGTCAAA 59.315 50.000 1.29 0.00 0.00 2.69
476 477 0.685097 AAGGCCTAGCTCGTTGTCAA 59.315 50.000 5.16 0.00 0.00 3.18
478 479 0.246635 TCAAGGCCTAGCTCGTTGTC 59.753 55.000 5.16 0.00 0.00 3.18
495 501 8.946085 CACTTATTAGACTTGTAAGCCAAATCA 58.054 33.333 6.50 0.00 31.73 2.57
519 525 2.230992 TGGACATATGCAAAACTGGCAC 59.769 45.455 1.58 0.00 45.23 5.01
523 529 6.157904 TGTTCAATGGACATATGCAAAACTG 58.842 36.000 1.58 0.00 0.00 3.16
525 531 6.591062 ACATGTTCAATGGACATATGCAAAAC 59.409 34.615 6.87 2.19 36.04 2.43
562 569 1.946081 CACACAACATGCACCACTACA 59.054 47.619 0.00 0.00 0.00 2.74
585 592 4.018050 AGGGTGAGCAGGATGATAAAGTTT 60.018 41.667 0.00 0.00 39.69 2.66
683 690 6.141560 TGTGTGTTCATTGCTTTTGTATCA 57.858 33.333 0.00 0.00 0.00 2.15
690 697 3.430651 CCTGGTTGTGTGTTCATTGCTTT 60.431 43.478 0.00 0.00 0.00 3.51
700 707 1.526917 GCAGAGCCTGGTTGTGTGT 60.527 57.895 9.35 0.00 31.21 3.72
724 731 1.376683 GTTGGCCGTGTGCATCCTA 60.377 57.895 0.00 0.00 43.89 2.94
736 743 2.564553 TTTGTGCGTTGGTGTTGGCC 62.565 55.000 0.00 0.00 0.00 5.36
745 752 0.565679 GCTTTCGTGTTTGTGCGTTG 59.434 50.000 0.00 0.00 0.00 4.10
748 755 1.004398 TGTAGCTTTCGTGTTTGTGCG 60.004 47.619 0.00 0.00 0.00 5.34
773 780 7.489113 AGTCTTTTGTTTTCACATTGCTAGTTG 59.511 33.333 0.00 0.00 31.06 3.16
774 781 7.489113 CAGTCTTTTGTTTTCACATTGCTAGTT 59.511 33.333 0.00 0.00 31.06 2.24
795 802 1.912043 ACCAAGGCATAGCTTCAGTCT 59.088 47.619 0.00 0.00 0.00 3.24
796 803 2.012673 CACCAAGGCATAGCTTCAGTC 58.987 52.381 0.00 0.00 0.00 3.51
797 804 1.340405 CCACCAAGGCATAGCTTCAGT 60.340 52.381 0.00 0.00 0.00 3.41
799 806 0.991146 TCCACCAAGGCATAGCTTCA 59.009 50.000 0.00 0.00 37.29 3.02
805 812 4.919774 TTCTTTACTCCACCAAGGCATA 57.080 40.909 0.00 0.00 37.29 3.14
840 847 6.880822 ATTGATCATTGTTTTGATTGCTCG 57.119 33.333 0.00 0.00 36.48 5.03
863 870 7.826744 TGCTGATATGGTTGTTGTTGTAGATTA 59.173 33.333 0.00 0.00 0.00 1.75
878 885 2.511218 AGATGGTTGGTGCTGATATGGT 59.489 45.455 0.00 0.00 0.00 3.55
894 901 7.012959 CATCACAACTGATGTTAAGAGATGG 57.987 40.000 3.00 0.00 46.21 3.51
925 932 2.372264 ACCTGGCAATCTGTAATGCTG 58.628 47.619 0.00 0.00 42.20 4.41
926 933 2.814805 ACCTGGCAATCTGTAATGCT 57.185 45.000 0.00 0.00 42.20 3.79
932 939 1.614317 GCACCTTACCTGGCAATCTGT 60.614 52.381 0.00 0.00 0.00 3.41
983 990 1.406539 AGTTGTTGTTTGCCAGAGCTG 59.593 47.619 0.00 0.00 40.80 4.24
1013 1023 4.970860 ATGATTATGGAGTGGAGTGGAG 57.029 45.455 0.00 0.00 0.00 3.86
1014 1024 4.280929 CGTATGATTATGGAGTGGAGTGGA 59.719 45.833 0.00 0.00 0.00 4.02
1015 1025 4.280929 TCGTATGATTATGGAGTGGAGTGG 59.719 45.833 0.00 0.00 0.00 4.00
1036 1046 7.787935 GCACGTAAAATTGTATCACTTATCTCG 59.212 37.037 0.00 0.00 0.00 4.04
1062 1072 4.771590 TCATTGTTGCTTCTAAGGCTTG 57.228 40.909 10.69 0.00 0.00 4.01
1118 1128 2.196742 TTCCCATGACTAGGATGGCT 57.803 50.000 14.80 0.00 39.36 4.75
1127 1137 1.355381 TGTGCAAGGATTCCCATGACT 59.645 47.619 9.65 0.00 33.12 3.41
1187 1201 5.576447 TCAAACTTTCTTCAGGGAACAAC 57.424 39.130 0.00 0.00 0.00 3.32
1220 1234 2.291209 AGGCCACATTGACATCACAA 57.709 45.000 5.01 0.00 0.00 3.33
1221 1235 2.291209 AAGGCCACATTGACATCACA 57.709 45.000 5.01 0.00 0.00 3.58
1254 1268 1.406887 GGCATCACGTCAGGTAATGGT 60.407 52.381 0.00 0.00 0.00 3.55
1264 1278 1.096967 TCATGGCATGGCATCACGTC 61.097 55.000 30.20 0.00 0.00 4.34
1288 1302 0.034089 GGGGAAGTAGTTGGCTGCAT 60.034 55.000 0.50 0.00 0.00 3.96
1317 1331 1.347707 TGAGAAGGACCTGCATTCGTT 59.652 47.619 1.14 3.71 41.91 3.85
1320 1334 1.407989 CCCTGAGAAGGACCTGCATTC 60.408 57.143 1.14 0.00 37.56 2.67
1345 1359 1.604147 ATGGGCGTCGTCACAGATGA 61.604 55.000 0.00 0.00 0.00 2.92
1468 1482 1.160137 GTTCTTCTTGCAGCGTGGAT 58.840 50.000 0.00 0.00 0.00 3.41
1538 1554 6.676990 AGGTGACAATGCTCATATCATCTA 57.323 37.500 7.61 0.00 28.92 1.98
1561 1577 6.010850 TGGGCCTACATGTACAAACAAATAA 58.989 36.000 4.53 0.00 39.58 1.40
1570 1587 2.943646 GCAATGTGGGCCTACATGTACA 60.944 50.000 32.68 6.39 40.24 2.90
1643 1664 9.697250 CGAAAAAGGAAATTAAAAACAAGAACC 57.303 29.630 0.00 0.00 0.00 3.62
1819 1841 6.440965 AGGACAATAAGTGTTCTAAGTAGGCT 59.559 38.462 0.00 0.00 45.02 4.58
1860 1882 2.092429 AGCCACAAAGGTTGACTTCTGA 60.092 45.455 0.00 0.00 38.85 3.27
1907 1929 5.106237 GGATACGCTACCTATAACCTGAGTG 60.106 48.000 0.00 0.00 0.00 3.51
1908 1930 5.008980 GGATACGCTACCTATAACCTGAGT 58.991 45.833 0.00 0.00 0.00 3.41
1929 1952 0.920763 AGGCATTGGGACCATGAGGA 60.921 55.000 0.00 0.00 38.69 3.71
2058 2101 4.876125 AGTGAGAGAGTTATGTGTGTGTG 58.124 43.478 0.00 0.00 0.00 3.82
2059 2102 4.584743 TGAGTGAGAGAGTTATGTGTGTGT 59.415 41.667 0.00 0.00 0.00 3.72
2060 2103 5.126396 TGAGTGAGAGAGTTATGTGTGTG 57.874 43.478 0.00 0.00 0.00 3.82
2061 2104 5.991933 ATGAGTGAGAGAGTTATGTGTGT 57.008 39.130 0.00 0.00 0.00 3.72
2062 2105 6.393171 TGAATGAGTGAGAGAGTTATGTGTG 58.607 40.000 0.00 0.00 0.00 3.82
2063 2106 6.596309 TGAATGAGTGAGAGAGTTATGTGT 57.404 37.500 0.00 0.00 0.00 3.72
2064 2107 8.193438 TGTATGAATGAGTGAGAGAGTTATGTG 58.807 37.037 0.00 0.00 0.00 3.21
2065 2108 8.298729 TGTATGAATGAGTGAGAGAGTTATGT 57.701 34.615 0.00 0.00 0.00 2.29
2066 2109 9.409312 GATGTATGAATGAGTGAGAGAGTTATG 57.591 37.037 0.00 0.00 0.00 1.90
2067 2110 9.140874 TGATGTATGAATGAGTGAGAGAGTTAT 57.859 33.333 0.00 0.00 0.00 1.89
2068 2111 8.525290 TGATGTATGAATGAGTGAGAGAGTTA 57.475 34.615 0.00 0.00 0.00 2.24
2069 2112 7.415592 TGATGTATGAATGAGTGAGAGAGTT 57.584 36.000 0.00 0.00 0.00 3.01
2070 2113 7.415592 TTGATGTATGAATGAGTGAGAGAGT 57.584 36.000 0.00 0.00 0.00 3.24
2071 2114 8.142551 TCATTGATGTATGAATGAGTGAGAGAG 58.857 37.037 3.15 0.00 35.88 3.20
2072 2115 7.924947 GTCATTGATGTATGAATGAGTGAGAGA 59.075 37.037 6.94 0.00 40.23 3.10
2073 2116 7.171167 GGTCATTGATGTATGAATGAGTGAGAG 59.829 40.741 6.94 0.00 40.23 3.20
2074 2117 6.988580 GGTCATTGATGTATGAATGAGTGAGA 59.011 38.462 6.94 0.00 40.23 3.27
2075 2118 6.764560 TGGTCATTGATGTATGAATGAGTGAG 59.235 38.462 6.94 0.00 40.23 3.51
2076 2119 6.652053 TGGTCATTGATGTATGAATGAGTGA 58.348 36.000 6.94 0.00 40.23 3.41
2077 2120 6.930667 TGGTCATTGATGTATGAATGAGTG 57.069 37.500 6.94 0.00 40.23 3.51
2078 2121 8.529424 AATTGGTCATTGATGTATGAATGAGT 57.471 30.769 6.94 0.00 40.23 3.41
2092 2262 6.488006 CCACTAAGGAGGATAATTGGTCATTG 59.512 42.308 0.00 0.00 41.22 2.82
2093 2263 6.389869 TCCACTAAGGAGGATAATTGGTCATT 59.610 38.462 0.00 0.00 43.07 2.57
2162 2426 1.410050 TTCAGGTCTGCAGCAGGTCA 61.410 55.000 22.62 0.00 31.51 4.02
2178 2442 0.984230 CACCCTACCTTCCAGCTTCA 59.016 55.000 0.00 0.00 0.00 3.02
2201 2465 2.738587 TTACACACACACCCCAACAT 57.261 45.000 0.00 0.00 0.00 2.71
2208 2472 5.040635 CACTTGGATTTTTACACACACACC 58.959 41.667 0.00 0.00 0.00 4.16
2210 2474 5.067153 CCTCACTTGGATTTTTACACACACA 59.933 40.000 0.00 0.00 0.00 3.72
2218 2482 5.886609 TGTCATCCCTCACTTGGATTTTTA 58.113 37.500 0.00 0.00 40.68 1.52
2242 2506 2.419673 CGTTTGTGAGCATCTTGGCATA 59.580 45.455 0.00 0.00 34.92 3.14
2259 2523 0.317770 CGTTGCATGCAAGGACGTTT 60.318 50.000 37.48 0.00 42.36 3.60
2262 2526 0.179225 GTACGTTGCATGCAAGGACG 60.179 55.000 43.20 37.35 42.36 4.79
2264 2528 0.958382 GGGTACGTTGCATGCAAGGA 60.958 55.000 43.20 29.37 42.36 3.36
2344 2608 9.065798 CATCCATATTAACCACATCACACAATA 57.934 33.333 0.00 0.00 0.00 1.90
2346 2610 6.889177 ACATCCATATTAACCACATCACACAA 59.111 34.615 0.00 0.00 0.00 3.33
2348 2612 6.942532 ACATCCATATTAACCACATCACAC 57.057 37.500 0.00 0.00 0.00 3.82
2409 2676 3.424703 GCCACCTTATGCATGGTATCAT 58.575 45.455 10.16 0.00 35.79 2.45
2410 2677 2.810032 CGCCACCTTATGCATGGTATCA 60.810 50.000 10.16 0.00 35.79 2.15
2432 2699 6.208599 TCATGTGGTAGCATCATCGTATTCTA 59.791 38.462 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.