Multiple sequence alignment - TraesCS1B01G275600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G275600 chr1B 100.000 6216 0 0 1 6216 483288005 483294220 0.000000e+00 11479.0
1 TraesCS1B01G275600 chr1B 88.710 124 8 6 5910 6030 483294034 483293914 5.020000e-31 147.0
2 TraesCS1B01G275600 chr1D 93.886 1521 56 15 3484 4994 361036091 361037584 0.000000e+00 2259.0
3 TraesCS1B01G275600 chr1D 92.960 1392 74 10 1441 2823 361033631 361035007 0.000000e+00 2006.0
4 TraesCS1B01G275600 chr1D 87.291 1377 78 46 80 1404 361032173 361033504 0.000000e+00 1483.0
5 TraesCS1B01G275600 chr1D 86.233 523 40 12 2976 3485 361035506 361036009 7.090000e-149 538.0
6 TraesCS1B01G275600 chr1D 91.409 291 18 2 5636 5919 361039091 361039381 5.840000e-105 392.0
7 TraesCS1B01G275600 chr1D 84.868 304 22 14 5331 5629 361038141 361038425 1.020000e-72 285.0
8 TraesCS1B01G275600 chr1D 94.410 161 6 2 2824 2981 361035042 361035202 1.730000e-60 244.0
9 TraesCS1B01G275600 chr1D 92.553 94 7 0 6022 6115 361039377 361039470 1.090000e-27 135.0
10 TraesCS1B01G275600 chr1D 84.071 113 7 2 6112 6214 361042743 361042854 1.430000e-16 99.0
11 TraesCS1B01G275600 chr1D 91.803 61 4 1 5276 5335 361037910 361037970 3.990000e-12 84.2
12 TraesCS1B01G275600 chr1A 91.377 1438 75 18 2824 4239 460639616 460641026 0.000000e+00 1923.0
13 TraesCS1B01G275600 chr1A 91.261 1293 80 12 1551 2823 460638301 460639580 0.000000e+00 1731.0
14 TraesCS1B01G275600 chr1A 94.004 567 22 2 4328 4890 460641347 460641905 0.000000e+00 848.0
15 TraesCS1B01G275600 chr1A 80.762 998 77 54 460 1397 460637129 460638071 0.000000e+00 673.0
16 TraesCS1B01G275600 chr1A 89.277 429 31 6 1 427 460636613 460637028 1.990000e-144 523.0
17 TraesCS1B01G275600 chr1A 92.462 199 8 3 4908 5105 460642273 460642465 1.710000e-70 278.0
18 TraesCS1B01G275600 chr3A 76.976 582 121 5 3515 4095 652821639 652822208 2.800000e-83 320.0
19 TraesCS1B01G275600 chr3A 80.495 364 65 4 4447 4807 652822791 652823151 2.210000e-69 274.0
20 TraesCS1B01G275600 chr3A 85.135 74 7 1 6079 6152 208644379 208644310 8.640000e-09 73.1
21 TraesCS1B01G275600 chr3D 76.248 581 127 7 3515 4095 517000518 517001087 1.310000e-76 298.0
22 TraesCS1B01G275600 chr3D 80.874 366 60 7 4447 4807 517001627 517001987 4.740000e-71 279.0
23 TraesCS1B01G275600 chr3D 77.483 151 16 7 6079 6216 171131433 171131288 2.400000e-09 75.0
24 TraesCS1B01G275600 chr3B 81.440 361 61 3 4450 4807 680253037 680252680 2.190000e-74 291.0
25 TraesCS1B01G275600 chr3B 91.597 119 3 2 5916 6027 10116365 10116483 2.320000e-34 158.0
26 TraesCS1B01G275600 chr3B 89.431 123 3 4 5912 6024 372832377 372832255 5.020000e-31 147.0
27 TraesCS1B01G275600 chr7D 93.913 115 3 2 5912 6022 390929779 390929893 2.980000e-38 171.0
28 TraesCS1B01G275600 chr7D 80.000 140 16 5 6026 6158 413440925 413440791 6.630000e-15 93.5
29 TraesCS1B01G275600 chr6D 93.103 116 4 2 5913 6024 435751028 435751143 3.850000e-37 167.0
30 TraesCS1B01G275600 chr6D 90.678 118 1 2 5915 6028 319685617 319685728 1.400000e-31 148.0
31 TraesCS1B01G275600 chr6B 90.351 114 6 2 5915 6024 447886161 447886273 1.810000e-30 145.0
32 TraesCS1B01G275600 chr5B 89.655 116 7 3 5914 6025 386569574 386569460 6.500000e-30 143.0
33 TraesCS1B01G275600 chr7B 89.167 120 4 3 5916 6031 594954419 594954305 2.340000e-29 141.0
34 TraesCS1B01G275600 chr7B 75.714 210 26 13 6027 6216 427814250 427814046 1.440000e-11 82.4
35 TraesCS1B01G275600 chr2A 82.812 128 18 1 6031 6158 593840131 593840254 1.830000e-20 111.0
36 TraesCS1B01G275600 chr7A 81.102 127 18 3 6026 6151 727467682 727467561 5.130000e-16 97.1
37 TraesCS1B01G275600 chr7A 100.000 29 0 0 6123 6151 727462830 727462802 3.000000e-03 54.7
38 TraesCS1B01G275600 chr4A 82.558 86 14 1 6120 6204 625887473 625887558 2.400000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G275600 chr1B 483288005 483294220 6215 False 11479.00 11479 100.000000 1 6216 1 chr1B.!!$F1 6215
1 TraesCS1B01G275600 chr1D 361032173 361042854 10681 False 752.52 2259 89.948400 80 6214 10 chr1D.!!$F1 6134
2 TraesCS1B01G275600 chr1A 460636613 460642465 5852 False 996.00 1923 89.857167 1 5105 6 chr1A.!!$F1 5104
3 TraesCS1B01G275600 chr3A 652821639 652823151 1512 False 297.00 320 78.735500 3515 4807 2 chr3A.!!$F1 1292
4 TraesCS1B01G275600 chr3D 517000518 517001987 1469 False 288.50 298 78.561000 3515 4807 2 chr3D.!!$F1 1292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 688 0.035725 TGCAAGCTGAGAGATGGTGG 60.036 55.0 0.00 0.00 0.00 4.61 F
1156 1296 0.098905 GGAAGAAAAATCTCCGCCGC 59.901 55.0 0.00 0.00 0.00 6.53 F
1572 1859 0.179073 GCCTGGATTAGCGAGCTTGA 60.179 55.0 4.70 0.00 0.00 3.02 F
2098 2395 0.391263 CCGTCCTGCCTACCTGTTTC 60.391 60.0 0.00 0.00 0.00 2.78 F
2156 2455 0.472044 TGGTAGCAGTGTCCTTGCAA 59.528 50.0 0.00 0.00 43.92 4.08 F
2677 2985 0.539438 TGAGGCGGGCTGAATTTTGT 60.539 50.0 9.52 0.00 0.00 2.83 F
3045 3704 0.880278 ACCGTGGATGCATGCGTATC 60.880 55.0 13.55 10.93 33.79 2.24 F
4848 6146 0.528466 CATGCGTACTGAGGATGCGT 60.528 55.0 4.14 0.14 31.12 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2463 2771 0.031721 GCATAAGCAGCTCCATTGGC 59.968 55.000 0.00 0.00 41.58 4.52 R
2623 2931 0.104855 ACACGTGCTGCTCTGAAGAA 59.895 50.000 17.22 0.00 0.00 2.52 R
3029 3688 0.250467 AGGGATACGCATGCATCCAC 60.250 55.000 28.72 20.67 42.22 4.02 R
3033 3692 0.469494 TGTGAGGGATACGCATGCAT 59.531 50.000 19.57 4.54 37.60 3.96 R
3166 3826 1.445871 AAATTTACTGACCGGCGACC 58.554 50.000 9.30 0.00 0.00 4.79 R
3616 4376 1.734047 GCCTCTACTGCACTGTCTTCG 60.734 57.143 0.00 0.00 0.00 3.79 R
4851 6149 1.279840 GAACCAAGAGCGCACACAC 59.720 57.895 11.47 0.00 0.00 3.82 R
5664 8229 2.026822 AGTACCTGCCAGGAGACAATTG 60.027 50.000 19.90 3.24 37.67 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.335142 GGTGTATCCGAGCTAGCTTCG 60.335 57.143 20.42 21.41 0.00 3.79
24 25 0.387494 GTATCCGAGCTAGCTTCGGC 60.387 60.000 32.91 22.66 45.66 5.54
25 26 1.853114 TATCCGAGCTAGCTTCGGCG 61.853 60.000 32.91 25.23 45.66 6.46
47 48 1.005215 AGGGAAGGTGCTCCATTTCTG 59.995 52.381 7.70 0.00 37.20 3.02
54 55 3.196685 AGGTGCTCCATTTCTGTAGACTC 59.803 47.826 7.70 0.00 35.89 3.36
67 68 1.642037 TAGACTCCTTCCGCACGTCG 61.642 60.000 0.00 0.00 38.08 5.12
87 88 2.159960 CGACGTGCAAGAGCTAAGAAAC 60.160 50.000 6.65 0.00 42.74 2.78
91 92 0.448197 GCAAGAGCTAAGAAACCCGC 59.552 55.000 0.00 0.00 37.91 6.13
92 93 1.087501 CAAGAGCTAAGAAACCCGCC 58.912 55.000 0.00 0.00 0.00 6.13
136 141 2.774687 TCTGATGGATGCATTCGGATG 58.225 47.619 0.00 0.00 36.32 3.51
193 198 4.048504 GGTAGTGTGTGATTGTTTTTGCC 58.951 43.478 0.00 0.00 0.00 4.52
225 230 1.139308 TATTACGACCCACACGCCG 59.861 57.895 0.00 0.00 0.00 6.46
257 264 6.992063 AGATGCACGAAAAGAATTATCACT 57.008 33.333 0.00 0.00 0.00 3.41
258 265 7.383102 AGATGCACGAAAAGAATTATCACTT 57.617 32.000 0.00 0.00 0.00 3.16
259 266 7.246311 AGATGCACGAAAAGAATTATCACTTG 58.754 34.615 0.00 0.00 0.00 3.16
260 267 6.312399 TGCACGAAAAGAATTATCACTTGT 57.688 33.333 0.00 0.00 0.00 3.16
261 268 6.370593 TGCACGAAAAGAATTATCACTTGTC 58.629 36.000 0.00 0.00 0.00 3.18
262 269 6.017523 TGCACGAAAAGAATTATCACTTGTCA 60.018 34.615 0.00 0.00 31.92 3.58
263 270 6.855914 GCACGAAAAGAATTATCACTTGTCAA 59.144 34.615 0.00 0.00 31.92 3.18
306 313 2.115266 CCCCGGCAAGTGGAAAGT 59.885 61.111 0.00 0.00 0.00 2.66
334 341 1.211818 GCTCATCGCCTCATCGTGAC 61.212 60.000 0.00 0.00 0.00 3.67
427 434 9.987272 CAGATAAAATTCCAAGTTCCTTTTCTT 57.013 29.630 0.00 0.00 0.00 2.52
432 439 6.983906 ATTCCAAGTTCCTTTTCTTGATGT 57.016 33.333 6.50 0.00 42.22 3.06
435 442 6.070656 TCCAAGTTCCTTTTCTTGATGTGAT 58.929 36.000 6.50 0.00 42.22 3.06
436 443 6.550854 TCCAAGTTCCTTTTCTTGATGTGATT 59.449 34.615 6.50 0.00 42.22 2.57
471 546 2.368875 CCTGAGATATGGGTTACCGCTT 59.631 50.000 0.00 0.00 40.75 4.68
499 574 1.541379 AGCACCGGAATGTTTTACCC 58.459 50.000 9.46 0.00 0.00 3.69
518 599 3.190535 ACCCAAGTAACATTAAGCAAGCG 59.809 43.478 0.00 0.00 0.00 4.68
595 682 2.299867 TGTGTGTATGCAAGCTGAGAGA 59.700 45.455 0.00 0.00 0.00 3.10
596 683 3.055602 TGTGTGTATGCAAGCTGAGAGAT 60.056 43.478 0.00 0.00 0.00 2.75
597 684 3.309138 GTGTGTATGCAAGCTGAGAGATG 59.691 47.826 0.00 0.00 0.00 2.90
599 686 2.502947 TGTATGCAAGCTGAGAGATGGT 59.497 45.455 0.00 0.00 0.00 3.55
600 687 2.039818 ATGCAAGCTGAGAGATGGTG 57.960 50.000 0.00 0.00 0.00 4.17
601 688 0.035725 TGCAAGCTGAGAGATGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
602 689 1.375098 GCAAGCTGAGAGATGGTGGC 61.375 60.000 0.00 0.00 0.00 5.01
605 692 1.818785 GCTGAGAGATGGTGGCTGC 60.819 63.158 0.00 0.00 0.00 5.25
606 693 1.906253 CTGAGAGATGGTGGCTGCT 59.094 57.895 0.00 0.00 0.00 4.24
607 694 1.117994 CTGAGAGATGGTGGCTGCTA 58.882 55.000 0.00 0.00 0.00 3.49
608 695 1.483827 CTGAGAGATGGTGGCTGCTAA 59.516 52.381 0.00 0.00 0.00 3.09
609 696 2.104451 CTGAGAGATGGTGGCTGCTAAT 59.896 50.000 0.00 0.00 0.00 1.73
610 697 2.103771 TGAGAGATGGTGGCTGCTAATC 59.896 50.000 0.00 0.00 0.00 1.75
611 698 2.103771 GAGAGATGGTGGCTGCTAATCA 59.896 50.000 0.00 0.00 0.00 2.57
612 699 2.507058 AGAGATGGTGGCTGCTAATCAA 59.493 45.455 0.00 0.00 0.00 2.57
613 700 3.137913 AGAGATGGTGGCTGCTAATCAAT 59.862 43.478 0.00 0.00 0.00 2.57
614 701 3.220110 AGATGGTGGCTGCTAATCAATG 58.780 45.455 0.00 0.00 0.00 2.82
615 702 1.766494 TGGTGGCTGCTAATCAATGG 58.234 50.000 0.00 0.00 0.00 3.16
616 703 1.035139 GGTGGCTGCTAATCAATGGG 58.965 55.000 0.00 0.00 0.00 4.00
637 724 1.270550 CACCTGCAGTCCATTCAAACC 59.729 52.381 13.81 0.00 0.00 3.27
656 743 1.334779 CCTGATCGGATCGTTACGGTC 60.335 57.143 9.80 9.80 40.45 4.79
789 892 1.637934 CATGCGATGCGACGACAAT 59.362 52.632 0.00 0.00 35.09 2.71
808 911 4.141937 ACAATGACACGATACAGCCTACAT 60.142 41.667 0.00 0.00 0.00 2.29
929 1049 1.810853 CGCACGCACATGAGGATGA 60.811 57.895 0.00 0.00 33.36 2.92
996 1116 1.743995 GTGGCCTATTCCGTTGCGT 60.744 57.895 3.32 0.00 0.00 5.24
997 1117 1.743623 TGGCCTATTCCGTTGCGTG 60.744 57.895 3.32 0.00 0.00 5.34
998 1118 2.469516 GGCCTATTCCGTTGCGTGG 61.470 63.158 0.00 0.00 0.00 4.94
999 1119 3.098555 CCTATTCCGTTGCGTGGC 58.901 61.111 0.00 0.00 0.00 5.01
1000 1120 2.701006 CTATTCCGTTGCGTGGCG 59.299 61.111 0.00 0.00 0.00 5.69
1001 1121 1.807981 CTATTCCGTTGCGTGGCGA 60.808 57.895 0.00 0.00 0.00 5.54
1002 1122 1.355796 CTATTCCGTTGCGTGGCGAA 61.356 55.000 0.00 0.00 0.00 4.70
1105 1233 1.731969 GTCCTTTCGTGTCCGTCCG 60.732 63.158 0.00 0.00 35.01 4.79
1152 1292 3.536570 GAGGAGGGAAGAAAAATCTCCG 58.463 50.000 0.00 0.00 46.21 4.63
1153 1293 2.017782 GGAGGGAAGAAAAATCTCCGC 58.982 52.381 0.00 0.00 35.30 5.54
1155 1295 0.733150 GGGAAGAAAAATCTCCGCCG 59.267 55.000 0.00 0.00 0.00 6.46
1156 1296 0.098905 GGAAGAAAAATCTCCGCCGC 59.901 55.000 0.00 0.00 0.00 6.53
1159 1299 2.754254 AAAAATCTCCGCCGCCCC 60.754 61.111 0.00 0.00 0.00 5.80
1160 1300 3.282374 AAAAATCTCCGCCGCCCCT 62.282 57.895 0.00 0.00 0.00 4.79
1161 1301 1.917336 AAAAATCTCCGCCGCCCCTA 61.917 55.000 0.00 0.00 0.00 3.53
1162 1302 1.705997 AAAATCTCCGCCGCCCCTAT 61.706 55.000 0.00 0.00 0.00 2.57
1163 1303 2.113243 AAATCTCCGCCGCCCCTATC 62.113 60.000 0.00 0.00 0.00 2.08
1236 1384 1.219393 GCCGGATATAGCCAGCCTC 59.781 63.158 5.05 0.00 0.00 4.70
1277 1425 1.738099 CAACTTCCTCAGCGTCCGG 60.738 63.158 0.00 0.00 0.00 5.14
1284 1432 4.853142 TCAGCGTCCGGCCCCTAT 62.853 66.667 0.00 0.00 45.17 2.57
1285 1433 2.915659 CAGCGTCCGGCCCCTATA 60.916 66.667 0.00 0.00 45.17 1.31
1294 1451 1.343069 CGGCCCCTATAGCTTCTTCT 58.657 55.000 0.00 0.00 0.00 2.85
1363 1520 4.135153 CACAGGCGTCCCTCCTCG 62.135 72.222 0.00 0.00 40.33 4.63
1366 1523 4.361971 AGGCGTCCCTCCTCGACA 62.362 66.667 0.00 0.00 36.46 4.35
1397 1558 2.820479 CGTCTCGTCTCCGGCTCT 60.820 66.667 0.00 0.00 33.95 4.09
1398 1559 2.815298 CGTCTCGTCTCCGGCTCTC 61.815 68.421 0.00 0.00 33.95 3.20
1400 1561 4.244802 CTCGTCTCCGGCTCTCGC 62.245 72.222 0.00 0.00 37.59 5.03
1435 1614 0.827507 GGCTGCCAGGTTTCCTTCAA 60.828 55.000 15.17 0.00 0.00 2.69
1436 1615 1.260544 GCTGCCAGGTTTCCTTCAAT 58.739 50.000 0.00 0.00 0.00 2.57
1437 1616 1.203287 GCTGCCAGGTTTCCTTCAATC 59.797 52.381 0.00 0.00 0.00 2.67
1438 1617 1.821136 CTGCCAGGTTTCCTTCAATCC 59.179 52.381 0.00 0.00 0.00 3.01
1441 1620 2.899900 GCCAGGTTTCCTTCAATCCTTT 59.100 45.455 0.00 0.00 32.49 3.11
1443 1622 4.800582 GCCAGGTTTCCTTCAATCCTTTTG 60.801 45.833 0.00 0.00 32.49 2.44
1444 1623 4.309933 CAGGTTTCCTTCAATCCTTTTGC 58.690 43.478 0.00 0.00 32.49 3.68
1445 1624 3.966665 AGGTTTCCTTCAATCCTTTTGCA 59.033 39.130 0.00 0.00 30.86 4.08
1446 1625 4.039609 AGGTTTCCTTCAATCCTTTTGCAG 59.960 41.667 0.00 0.00 30.86 4.41
1447 1626 4.039124 GGTTTCCTTCAATCCTTTTGCAGA 59.961 41.667 0.00 0.00 0.00 4.26
1478 1764 1.080974 TTTCGGGCTTCGTCTCGAC 60.081 57.895 0.00 0.00 40.32 4.20
1484 1770 1.081108 GCTTCGTCTCGACTGTGCT 60.081 57.895 0.00 0.00 34.89 4.40
1485 1771 1.068287 GCTTCGTCTCGACTGTGCTC 61.068 60.000 0.00 0.00 34.89 4.26
1495 1781 1.603172 CGACTGTGCTCCCCGATTATC 60.603 57.143 0.00 0.00 0.00 1.75
1521 1807 1.092921 TTCCGATGGATTTTCGCGGG 61.093 55.000 6.13 0.00 42.10 6.13
1522 1808 2.327940 CGATGGATTTTCGCGGGC 59.672 61.111 6.13 0.00 0.00 6.13
1526 1812 0.535102 ATGGATTTTCGCGGGCTAGG 60.535 55.000 6.13 0.00 0.00 3.02
1570 1857 0.543749 AAGCCTGGATTAGCGAGCTT 59.456 50.000 1.86 0.00 0.00 3.74
1572 1859 0.179073 GCCTGGATTAGCGAGCTTGA 60.179 55.000 4.70 0.00 0.00 3.02
1575 1862 0.815095 TGGATTAGCGAGCTTGACGA 59.185 50.000 4.70 0.00 0.00 4.20
1665 1952 3.570912 TCCCTCGCCTTATTTTAAGGG 57.429 47.619 13.70 0.00 44.06 3.95
1681 1968 5.811796 TTAAGGGTGTAGTTTGCTGTCTA 57.188 39.130 0.00 0.00 0.00 2.59
1689 1976 6.149474 GGTGTAGTTTGCTGTCTAATTGTGAT 59.851 38.462 0.00 0.00 0.00 3.06
1726 2018 2.676471 GCCGGAAAGGTGCCATGT 60.676 61.111 5.05 0.00 43.70 3.21
1727 2019 2.993471 GCCGGAAAGGTGCCATGTG 61.993 63.158 5.05 0.00 43.70 3.21
1728 2020 2.568090 CGGAAAGGTGCCATGTGC 59.432 61.111 0.00 0.00 41.77 4.57
1729 2021 2.973082 GGAAAGGTGCCATGTGCC 59.027 61.111 4.07 0.00 40.16 5.01
1730 2022 2.649129 GGAAAGGTGCCATGTGCCC 61.649 63.158 4.07 5.12 40.16 5.36
1731 2023 1.907807 GAAAGGTGCCATGTGCCCA 60.908 57.895 12.61 0.00 40.16 5.36
1732 2024 1.229272 AAAGGTGCCATGTGCCCAT 60.229 52.632 12.61 0.00 40.16 4.00
1733 2025 1.546589 AAAGGTGCCATGTGCCCATG 61.547 55.000 1.66 1.66 46.65 3.66
1814 2106 4.545610 CAGCTTCTCCATCTCGTAGATTC 58.454 47.826 0.00 0.00 31.32 2.52
1984 2276 2.439409 TGCCCATCTGACTGTTCATTG 58.561 47.619 0.00 0.00 0.00 2.82
2098 2395 0.391263 CCGTCCTGCCTACCTGTTTC 60.391 60.000 0.00 0.00 0.00 2.78
2119 2418 2.549633 ATCTTTGCTGTTATGTGCGC 57.450 45.000 0.00 0.00 0.00 6.09
2129 2428 4.498009 GCTGTTATGTGCGCTTTGGATAAT 60.498 41.667 9.73 0.00 0.00 1.28
2156 2455 0.472044 TGGTAGCAGTGTCCTTGCAA 59.528 50.000 0.00 0.00 43.92 4.08
2157 2456 1.133945 TGGTAGCAGTGTCCTTGCAAA 60.134 47.619 0.00 0.00 43.92 3.68
2172 2471 5.239087 TCCTTGCAAAATTTTCTTGATTGCC 59.761 36.000 0.00 0.00 44.27 4.52
2178 2477 3.985019 ATTTTCTTGATTGCCATGCCA 57.015 38.095 0.00 0.00 0.00 4.92
2219 2518 8.265055 TGTTATCACCTATCTTAGTTTTCAGGG 58.735 37.037 0.00 0.00 0.00 4.45
2270 2569 5.929058 TGCCATTTTTATGTAGGATTGCA 57.071 34.783 0.00 0.00 0.00 4.08
2295 2600 8.819974 CATTTTATTGATTGGATTGCCTGTAAC 58.180 33.333 0.00 0.00 34.31 2.50
2368 2676 1.278985 CAGTGGACAGGCAGTTGGATA 59.721 52.381 0.00 0.00 0.00 2.59
2549 2857 2.441717 TGTTTGCACTGGCTGGCA 60.442 55.556 3.18 3.18 41.91 4.92
2586 2894 4.875578 GGGGGTTACTAATCTTTCCCTT 57.124 45.455 0.00 0.00 35.65 3.95
2602 2910 4.553330 TCCCTTTCATGGTGAGTAACTC 57.447 45.455 0.00 0.00 0.00 3.01
2621 2929 6.482898 AACTCCGTATCTCTCAGTCTAGTA 57.517 41.667 0.00 0.00 0.00 1.82
2622 2930 6.092955 ACTCCGTATCTCTCAGTCTAGTAG 57.907 45.833 0.00 0.00 0.00 2.57
2623 2931 5.599656 ACTCCGTATCTCTCAGTCTAGTAGT 59.400 44.000 0.00 0.00 0.00 2.73
2638 2946 3.311486 AGTAGTTCTTCAGAGCAGCAC 57.689 47.619 0.00 0.00 0.00 4.40
2649 2957 2.017049 AGAGCAGCACGTGTTTTCTTT 58.983 42.857 18.38 3.21 0.00 2.52
2655 2963 3.917380 CAGCACGTGTTTTCTTTTGTTCA 59.083 39.130 18.38 0.00 0.00 3.18
2661 2969 5.799936 ACGTGTTTTCTTTTGTTCATGTGAG 59.200 36.000 0.00 0.00 0.00 3.51
2663 2971 5.005682 GTGTTTTCTTTTGTTCATGTGAGGC 59.994 40.000 0.00 0.00 0.00 4.70
2668 2976 2.045926 GTTCATGTGAGGCGGGCT 60.046 61.111 2.69 2.69 0.00 5.19
2677 2985 0.539438 TGAGGCGGGCTGAATTTTGT 60.539 50.000 9.52 0.00 0.00 2.83
2732 3043 5.420739 GGGAGCCCTTATGTAAATTTGTTGA 59.579 40.000 0.00 0.00 0.00 3.18
2736 3047 8.776376 AGCCCTTATGTAAATTTGTTGAAATG 57.224 30.769 0.00 0.00 31.83 2.32
2737 3048 8.592809 AGCCCTTATGTAAATTTGTTGAAATGA 58.407 29.630 0.00 0.00 31.83 2.57
2767 3078 7.925043 TCTGGCTTTAATTATTAAACGGTGA 57.075 32.000 6.08 1.75 32.15 4.02
2770 3081 8.057536 TGGCTTTAATTATTAAACGGTGATGT 57.942 30.769 6.08 0.00 32.15 3.06
2772 3083 7.971722 GGCTTTAATTATTAAACGGTGATGTGT 59.028 33.333 6.08 0.00 32.15 3.72
2773 3084 9.991388 GCTTTAATTATTAAACGGTGATGTGTA 57.009 29.630 6.08 0.00 32.15 2.90
2775 3086 9.991388 TTTAATTATTAAACGGTGATGTGTAGC 57.009 29.630 6.08 0.00 30.60 3.58
2776 3087 7.859325 AATTATTAAACGGTGATGTGTAGCT 57.141 32.000 0.00 0.00 0.00 3.32
2777 3088 6.897259 TTATTAAACGGTGATGTGTAGCTC 57.103 37.500 0.00 0.00 0.00 4.09
2794 3106 6.425114 GTGTAGCTCTTGAACTGAGAAATTCA 59.575 38.462 0.00 0.00 33.68 2.57
2849 3196 6.350612 GGTCTCCTATTACTCAGTCATATGCC 60.351 46.154 0.00 0.00 0.00 4.40
2874 3221 6.492087 CCCTTCATAGGAAAAGTAACCAAACA 59.508 38.462 0.00 0.00 45.05 2.83
2882 3229 2.675658 AGTAACCAAACACATGGGCT 57.324 45.000 0.00 0.00 45.18 5.19
2939 3286 6.902408 TGAAGTCTTCACCTTACCCTTTTTA 58.098 36.000 11.36 0.00 34.08 1.52
2940 3287 7.523415 TGAAGTCTTCACCTTACCCTTTTTAT 58.477 34.615 11.36 0.00 34.08 1.40
2942 3289 9.511272 GAAGTCTTCACCTTACCCTTTTTATTA 57.489 33.333 7.76 0.00 0.00 0.98
3027 3686 9.614792 ATGTTTATGGAGGTTATCACTTTCTAC 57.385 33.333 0.00 0.00 0.00 2.59
3029 3688 4.730949 TGGAGGTTATCACTTTCTACCG 57.269 45.455 0.00 0.00 34.09 4.02
3033 3692 4.091549 AGGTTATCACTTTCTACCGTGGA 58.908 43.478 0.00 0.00 34.09 4.02
3035 3694 4.809426 GGTTATCACTTTCTACCGTGGATG 59.191 45.833 0.00 0.00 0.00 3.51
3045 3704 0.880278 ACCGTGGATGCATGCGTATC 60.880 55.000 13.55 10.93 33.79 2.24
3090 3749 4.256920 CACCCACTACCTTGATTCTTGAG 58.743 47.826 0.00 0.00 0.00 3.02
3094 3753 5.415221 CCACTACCTTGATTCTTGAGACTC 58.585 45.833 0.00 0.00 0.00 3.36
3137 3797 1.000274 GGTCACATTTGTTGGTGCTCC 60.000 52.381 0.00 0.00 35.04 4.70
3164 3824 8.893219 TCAGTTGGATGATACTCATGATAAAC 57.107 34.615 0.00 0.00 37.20 2.01
3165 3825 7.933577 TCAGTTGGATGATACTCATGATAAACC 59.066 37.037 0.00 0.00 37.20 3.27
3166 3826 6.931281 AGTTGGATGATACTCATGATAAACCG 59.069 38.462 0.00 0.00 37.20 4.44
3167 3827 5.793817 TGGATGATACTCATGATAAACCGG 58.206 41.667 0.00 0.00 37.20 5.28
3168 3828 5.306937 TGGATGATACTCATGATAAACCGGT 59.693 40.000 0.00 0.00 37.20 5.28
3169 3829 5.869888 GGATGATACTCATGATAAACCGGTC 59.130 44.000 8.04 0.00 37.20 4.79
3170 3830 4.866921 TGATACTCATGATAAACCGGTCG 58.133 43.478 8.04 0.00 0.00 4.79
3209 3869 9.447279 TTTTAGAAGGATGTCATATTCTCCCTA 57.553 33.333 13.47 3.71 34.08 3.53
3213 3873 5.982391 AGGATGTCATATTCTCCCTAAGGA 58.018 41.667 0.00 0.00 41.08 3.36
3236 3897 6.071616 GGAGCACCATCAAATGTAACCTTTTA 60.072 38.462 0.00 0.00 35.97 1.52
3237 3898 7.363793 GGAGCACCATCAAATGTAACCTTTTAT 60.364 37.037 0.00 0.00 35.97 1.40
3238 3899 7.547227 AGCACCATCAAATGTAACCTTTTATC 58.453 34.615 0.00 0.00 0.00 1.75
3239 3900 7.397192 AGCACCATCAAATGTAACCTTTTATCT 59.603 33.333 0.00 0.00 0.00 1.98
3240 3901 7.702348 GCACCATCAAATGTAACCTTTTATCTC 59.298 37.037 0.00 0.00 0.00 2.75
3241 3902 8.190784 CACCATCAAATGTAACCTTTTATCTCC 58.809 37.037 0.00 0.00 0.00 3.71
3242 3903 7.067008 ACCATCAAATGTAACCTTTTATCTCCG 59.933 37.037 0.00 0.00 0.00 4.63
3247 3908 9.471084 CAAATGTAACCTTTTATCTCCGTTTTT 57.529 29.630 0.00 0.00 0.00 1.94
3287 3952 6.951062 TGTGTCATTTTGATGTTTCCTGTA 57.049 33.333 0.00 0.00 0.00 2.74
3334 4008 6.697641 TCCTTCCTTGTCTACTGGTTTAAT 57.302 37.500 0.00 0.00 0.00 1.40
3338 4012 7.094762 CCTTCCTTGTCTACTGGTTTAATTGAC 60.095 40.741 0.00 0.00 0.00 3.18
3348 4022 6.668323 ACTGGTTTAATTGACATCGTTTCAG 58.332 36.000 0.00 0.00 0.00 3.02
3366 4042 8.903820 TCGTTTCAGATATAACATCTCTTCTGA 58.096 33.333 0.00 0.00 38.18 3.27
3379 4055 6.732154 CATCTCTTCTGATGTTCTCTCTCTC 58.268 44.000 0.00 0.00 39.05 3.20
3380 4056 6.065976 TCTCTTCTGATGTTCTCTCTCTCT 57.934 41.667 0.00 0.00 0.00 3.10
3381 4057 6.115446 TCTCTTCTGATGTTCTCTCTCTCTC 58.885 44.000 0.00 0.00 0.00 3.20
3382 4058 5.192927 TCTTCTGATGTTCTCTCTCTCTCC 58.807 45.833 0.00 0.00 0.00 3.71
3383 4059 3.897239 TCTGATGTTCTCTCTCTCTCCC 58.103 50.000 0.00 0.00 0.00 4.30
3384 4060 2.958355 CTGATGTTCTCTCTCTCTCCCC 59.042 54.545 0.00 0.00 0.00 4.81
3385 4061 2.316108 GATGTTCTCTCTCTCTCCCCC 58.684 57.143 0.00 0.00 0.00 5.40
3409 4085 7.083858 CCCATTTTTAACTCACATGTACACAG 58.916 38.462 0.00 0.00 0.00 3.66
3429 4105 2.308866 AGCCAAGCCTTACCAGTGTATT 59.691 45.455 0.00 0.00 0.00 1.89
3430 4106 3.521937 AGCCAAGCCTTACCAGTGTATTA 59.478 43.478 0.00 0.00 0.00 0.98
3431 4107 4.166144 AGCCAAGCCTTACCAGTGTATTAT 59.834 41.667 0.00 0.00 0.00 1.28
3432 4108 5.368523 AGCCAAGCCTTACCAGTGTATTATA 59.631 40.000 0.00 0.00 0.00 0.98
3497 4257 9.797556 GTCTGTACTTTTTAGAATTTGTTGGTT 57.202 29.630 0.00 0.00 0.00 3.67
3616 4376 1.135575 CGCCAAATCAAACCTCAGCTC 60.136 52.381 0.00 0.00 0.00 4.09
3688 4448 3.071167 AGTTAGACCTCAGCCGAAGTTTT 59.929 43.478 0.00 0.00 0.00 2.43
3716 4476 4.077300 AGTGACCGATCATTGTATGCAT 57.923 40.909 3.79 3.79 37.14 3.96
3875 4635 4.264253 CACTGATGAATCCTTGCAGGTAA 58.736 43.478 0.00 0.00 36.53 2.85
3878 4638 5.954150 ACTGATGAATCCTTGCAGGTAATTT 59.046 36.000 0.00 0.00 36.53 1.82
4095 4858 7.120579 TGGCTGTGTTCTTATAACAGGTAATTG 59.879 37.037 4.39 0.00 41.31 2.32
4119 4882 5.455525 GCCACATATACGATTTGTTCTTTGC 59.544 40.000 0.00 0.00 0.00 3.68
4122 4885 7.166307 CCACATATACGATTTGTTCTTTGCATG 59.834 37.037 0.00 0.00 0.00 4.06
4214 4977 4.628333 GCTGCTGGTACGTTTGTTTCTATA 59.372 41.667 0.00 0.00 0.00 1.31
4218 4982 7.745015 TGCTGGTACGTTTGTTTCTATAATTC 58.255 34.615 0.00 0.00 0.00 2.17
4235 4999 9.909644 TCTATAATTCGTAATCTTCTAGGTTGC 57.090 33.333 0.00 0.00 0.00 4.17
4282 5178 2.519302 GCACCTGGGTTGCTGTGT 60.519 61.111 0.00 0.00 0.00 3.72
4304 5321 7.007697 GTGTTGTACGTACATGATTTTGAGAC 58.992 38.462 27.82 18.39 35.89 3.36
4329 5346 7.923878 ACGCTTTCAACCAACTGTTAATATTTT 59.076 29.630 0.00 0.00 34.69 1.82
4336 5353 9.319143 CAACCAACTGTTAATATTTTCAACCAA 57.681 29.630 0.00 0.00 34.69 3.67
4337 5354 8.880878 ACCAACTGTTAATATTTTCAACCAAC 57.119 30.769 0.00 0.00 0.00 3.77
4339 5356 8.977505 CCAACTGTTAATATTTTCAACCAACTG 58.022 33.333 0.00 0.00 0.00 3.16
4340 5357 9.528018 CAACTGTTAATATTTTCAACCAACTGT 57.472 29.630 0.00 0.00 0.00 3.55
4422 5649 7.653713 GTGTCACTCTTTCAGATCTTAGACAAA 59.346 37.037 0.00 0.00 34.54 2.83
4425 5652 8.424918 TCACTCTTTCAGATCTTAGACAAAAGT 58.575 33.333 0.00 0.00 0.00 2.66
4456 5748 2.328473 CGATCTTTCACTGCAGACGAA 58.672 47.619 23.35 18.88 0.00 3.85
4848 6146 0.528466 CATGCGTACTGAGGATGCGT 60.528 55.000 4.14 0.14 31.12 5.24
4849 6147 0.528466 ATGCGTACTGAGGATGCGTG 60.528 55.000 2.07 0.00 0.00 5.34
4850 6148 1.153823 GCGTACTGAGGATGCGTGT 60.154 57.895 0.00 0.00 0.00 4.49
4851 6149 1.413767 GCGTACTGAGGATGCGTGTG 61.414 60.000 0.00 0.00 0.00 3.82
4852 6150 0.109272 CGTACTGAGGATGCGTGTGT 60.109 55.000 0.00 0.00 0.00 3.72
4853 6151 1.350193 GTACTGAGGATGCGTGTGTG 58.650 55.000 0.00 0.00 0.00 3.82
4854 6152 0.966179 TACTGAGGATGCGTGTGTGT 59.034 50.000 0.00 0.00 0.00 3.72
4855 6153 0.601046 ACTGAGGATGCGTGTGTGTG 60.601 55.000 0.00 0.00 0.00 3.82
4856 6154 0.601046 CTGAGGATGCGTGTGTGTGT 60.601 55.000 0.00 0.00 0.00 3.72
4866 6164 2.179547 TGTGTGTGTGCGCTCTTGG 61.180 57.895 9.73 0.00 0.00 3.61
4945 6593 5.357878 AGACGTGTATATAAACTCGGAACCA 59.642 40.000 0.00 0.00 39.86 3.67
5071 6757 4.739793 TCTGGTGGATTTCAACAAGGATT 58.260 39.130 0.00 0.00 43.37 3.01
5073 6759 6.310941 TCTGGTGGATTTCAACAAGGATTTA 58.689 36.000 0.00 0.00 43.37 1.40
5080 6766 7.039363 TGGATTTCAACAAGGATTTATCGGTTT 60.039 33.333 0.00 0.00 0.00 3.27
5110 6800 4.455606 GGGATCAGTAGTTTGCAGCTTAT 58.544 43.478 0.00 0.00 0.00 1.73
5111 6801 5.454755 GGGGATCAGTAGTTTGCAGCTTATA 60.455 44.000 0.00 0.00 0.00 0.98
5113 6803 5.698545 GGATCAGTAGTTTGCAGCTTATAGG 59.301 44.000 0.00 0.00 0.00 2.57
5114 6804 5.023533 TCAGTAGTTTGCAGCTTATAGGG 57.976 43.478 0.00 0.00 0.00 3.53
5115 6805 4.469945 TCAGTAGTTTGCAGCTTATAGGGT 59.530 41.667 0.00 0.00 0.00 4.34
5116 6806 4.572389 CAGTAGTTTGCAGCTTATAGGGTG 59.428 45.833 9.52 9.52 37.71 4.61
5117 6807 4.469945 AGTAGTTTGCAGCTTATAGGGTGA 59.530 41.667 17.29 0.93 36.91 4.02
5118 6808 4.510167 AGTTTGCAGCTTATAGGGTGAT 57.490 40.909 17.29 0.00 36.91 3.06
5121 6811 7.316393 AGTTTGCAGCTTATAGGGTGATATA 57.684 36.000 17.29 0.00 36.91 0.86
5123 6813 7.826252 AGTTTGCAGCTTATAGGGTGATATATG 59.174 37.037 17.29 0.00 36.91 1.78
5131 6821 7.583416 GCTTATAGGGTGATATATGGGCAGAAA 60.583 40.741 0.00 0.00 0.00 2.52
5139 6829 2.969821 TATGGGCAGAAACTGGTTGT 57.030 45.000 0.00 0.00 31.21 3.32
5140 6830 2.086610 ATGGGCAGAAACTGGTTGTT 57.913 45.000 0.00 0.00 41.29 2.83
5152 6842 5.529581 AACTGGTTGTTTGGTAGAAATGG 57.470 39.130 0.00 0.00 34.84 3.16
5153 6843 3.320826 ACTGGTTGTTTGGTAGAAATGGC 59.679 43.478 0.00 0.00 0.00 4.40
5154 6844 3.300388 TGGTTGTTTGGTAGAAATGGCA 58.700 40.909 0.00 0.00 0.00 4.92
5155 6845 3.900601 TGGTTGTTTGGTAGAAATGGCAT 59.099 39.130 0.00 0.00 0.00 4.40
5156 6846 4.021544 TGGTTGTTTGGTAGAAATGGCATC 60.022 41.667 0.00 0.00 0.00 3.91
5157 6847 4.220602 GGTTGTTTGGTAGAAATGGCATCT 59.779 41.667 0.00 0.00 0.00 2.90
5158 6848 5.279456 GGTTGTTTGGTAGAAATGGCATCTT 60.279 40.000 0.00 0.00 0.00 2.40
5159 6849 6.223120 GTTGTTTGGTAGAAATGGCATCTTT 58.777 36.000 0.00 0.00 0.00 2.52
5160 6850 6.418057 TGTTTGGTAGAAATGGCATCTTTT 57.582 33.333 0.00 0.00 0.00 2.27
5161 6851 6.454795 TGTTTGGTAGAAATGGCATCTTTTC 58.545 36.000 0.00 1.82 37.33 2.29
5162 6852 5.659440 TTGGTAGAAATGGCATCTTTTCC 57.341 39.130 0.00 2.34 37.60 3.13
5165 6855 1.478105 AGAAATGGCATCTTTTCCGCC 59.522 47.619 0.00 0.00 46.43 6.13
5167 6857 0.819582 AATGGCATCTTTTCCGCCTG 59.180 50.000 0.00 0.00 46.39 4.85
5173 6863 0.693049 ATCTTTTCCGCCTGGTCTGT 59.307 50.000 0.00 0.00 36.30 3.41
5180 6870 1.226974 CGCCTGGTCTGTGTATCGG 60.227 63.158 0.00 0.00 0.00 4.18
5181 6871 1.663379 CGCCTGGTCTGTGTATCGGA 61.663 60.000 0.00 0.00 0.00 4.55
5184 6874 1.069204 CCTGGTCTGTGTATCGGATGG 59.931 57.143 0.00 0.00 33.66 3.51
5192 6882 2.205074 GTGTATCGGATGGTGCTCAAG 58.795 52.381 0.00 0.00 0.00 3.02
5251 6977 9.216117 CTGATGATAGCAAATGATATGACTGAA 57.784 33.333 0.00 0.00 0.00 3.02
5252 6978 8.996271 TGATGATAGCAAATGATATGACTGAAC 58.004 33.333 0.00 0.00 0.00 3.18
5254 6980 6.424812 TGATAGCAAATGATATGACTGAACCG 59.575 38.462 0.00 0.00 0.00 4.44
5257 6983 5.065218 AGCAAATGATATGACTGAACCGAAC 59.935 40.000 0.00 0.00 0.00 3.95
5259 6985 6.257849 GCAAATGATATGACTGAACCGAACTA 59.742 38.462 0.00 0.00 0.00 2.24
5260 6986 7.621991 CAAATGATATGACTGAACCGAACTAC 58.378 38.462 0.00 0.00 0.00 2.73
5261 6987 6.716934 ATGATATGACTGAACCGAACTACT 57.283 37.500 0.00 0.00 0.00 2.57
5262 6988 5.891451 TGATATGACTGAACCGAACTACTG 58.109 41.667 0.00 0.00 0.00 2.74
5263 6989 2.433868 TGACTGAACCGAACTACTGC 57.566 50.000 0.00 0.00 0.00 4.40
5265 6991 2.364324 TGACTGAACCGAACTACTGCTT 59.636 45.455 0.00 0.00 0.00 3.91
5266 6992 2.731976 GACTGAACCGAACTACTGCTTG 59.268 50.000 0.00 0.00 0.00 4.01
5267 6993 2.069273 CTGAACCGAACTACTGCTTGG 58.931 52.381 0.00 0.00 0.00 3.61
5269 6995 2.158871 TGAACCGAACTACTGCTTGGTT 60.159 45.455 0.00 0.00 42.08 3.67
5270 6996 2.632987 ACCGAACTACTGCTTGGTTT 57.367 45.000 0.00 0.00 0.00 3.27
5271 6997 2.927028 ACCGAACTACTGCTTGGTTTT 58.073 42.857 0.00 0.00 0.00 2.43
5272 6998 3.284617 ACCGAACTACTGCTTGGTTTTT 58.715 40.909 0.00 0.00 0.00 1.94
5299 7025 1.660167 TGAATCGCTTCAGCATCAGG 58.340 50.000 0.00 0.00 42.21 3.86
5308 7034 3.242673 GCTTCAGCATCAGGATTTCTTCG 60.243 47.826 0.00 0.00 41.59 3.79
5316 7042 6.015940 AGCATCAGGATTTCTTCGAAGTTTTT 60.016 34.615 23.85 8.47 0.00 1.94
5324 7050 7.595130 GGATTTCTTCGAAGTTTTTGTTATGCT 59.405 33.333 23.85 0.00 0.00 3.79
5326 7052 7.678194 TTCTTCGAAGTTTTTGTTATGCTTG 57.322 32.000 23.85 0.00 0.00 4.01
5329 7055 4.580995 TCGAAGTTTTTGTTATGCTTGGGA 59.419 37.500 0.00 0.00 0.00 4.37
5330 7056 5.242838 TCGAAGTTTTTGTTATGCTTGGGAT 59.757 36.000 0.00 0.00 0.00 3.85
5331 7057 6.431543 TCGAAGTTTTTGTTATGCTTGGGATA 59.568 34.615 0.00 0.00 0.00 2.59
5332 7058 7.122055 TCGAAGTTTTTGTTATGCTTGGGATAT 59.878 33.333 0.00 0.00 0.00 1.63
5334 7060 9.087424 GAAGTTTTTGTTATGCTTGGGATATTC 57.913 33.333 0.00 0.00 0.00 1.75
5335 7061 8.133024 AGTTTTTGTTATGCTTGGGATATTCA 57.867 30.769 0.00 0.00 0.00 2.57
5336 7062 8.761689 AGTTTTTGTTATGCTTGGGATATTCAT 58.238 29.630 0.00 0.00 0.00 2.57
5338 7064 7.894753 TTTGTTATGCTTGGGATATTCATGA 57.105 32.000 0.00 0.00 0.00 3.07
5346 7248 6.944290 TGCTTGGGATATTCATGAGGAAATAG 59.056 38.462 0.00 0.00 39.39 1.73
5356 7258 5.895928 TCATGAGGAAATAGTTCAGTCTCG 58.104 41.667 5.15 0.00 35.25 4.04
5360 7262 5.106118 TGAGGAAATAGTTCAGTCTCGTCTG 60.106 44.000 5.15 0.00 35.25 3.51
5362 7264 5.096849 GGAAATAGTTCAGTCTCGTCTGTC 58.903 45.833 5.15 0.00 35.25 3.51
5391 7296 6.183360 GCACTCTTTTGTTCAGAACTACTTGT 60.183 38.462 14.51 4.22 0.00 3.16
5397 7302 3.201266 TGTTCAGAACTACTTGTGGGGTT 59.799 43.478 14.51 0.00 0.00 4.11
5413 7318 2.231235 GGGGTTTGTAAGCAATGGAGTG 59.769 50.000 0.00 0.00 34.18 3.51
5418 7323 4.278419 GTTTGTAAGCAATGGAGTGGAACT 59.722 41.667 0.00 0.00 42.17 3.01
5434 7339 3.898123 TGGAACTAGAGGGATGAGTATGC 59.102 47.826 0.00 0.00 0.00 3.14
5435 7340 3.898123 GGAACTAGAGGGATGAGTATGCA 59.102 47.826 0.00 0.00 0.00 3.96
5436 7341 4.021544 GGAACTAGAGGGATGAGTATGCAG 60.022 50.000 0.00 0.00 0.00 4.41
5437 7342 2.896685 ACTAGAGGGATGAGTATGCAGC 59.103 50.000 0.00 0.00 0.00 5.25
5438 7343 2.100128 AGAGGGATGAGTATGCAGCT 57.900 50.000 0.00 0.00 0.00 4.24
5439 7344 2.406559 AGAGGGATGAGTATGCAGCTT 58.593 47.619 0.00 0.00 0.00 3.74
5440 7345 3.581101 AGAGGGATGAGTATGCAGCTTA 58.419 45.455 0.00 0.00 0.00 3.09
5441 7346 3.969976 AGAGGGATGAGTATGCAGCTTAA 59.030 43.478 0.00 0.00 0.00 1.85
5442 7347 4.040217 AGAGGGATGAGTATGCAGCTTAAG 59.960 45.833 0.00 0.00 0.00 1.85
5443 7348 3.072184 AGGGATGAGTATGCAGCTTAAGG 59.928 47.826 4.29 0.00 0.00 2.69
5444 7349 3.181450 GGGATGAGTATGCAGCTTAAGGT 60.181 47.826 0.12 0.12 0.00 3.50
5445 7350 4.455606 GGATGAGTATGCAGCTTAAGGTT 58.544 43.478 3.96 0.00 0.00 3.50
5446 7351 4.274459 GGATGAGTATGCAGCTTAAGGTTG 59.726 45.833 3.96 2.34 0.00 3.77
5447 7352 4.551702 TGAGTATGCAGCTTAAGGTTGA 57.448 40.909 3.96 0.00 0.00 3.18
5448 7353 5.102953 TGAGTATGCAGCTTAAGGTTGAT 57.897 39.130 3.96 2.65 0.00 2.57
5449 7354 4.877823 TGAGTATGCAGCTTAAGGTTGATG 59.122 41.667 3.96 0.00 0.00 3.07
5450 7355 3.629398 AGTATGCAGCTTAAGGTTGATGC 59.371 43.478 3.96 6.12 0.00 3.91
5459 7364 0.953960 AAGGTTGATGCGTTCCGTCC 60.954 55.000 0.00 0.00 0.00 4.79
5473 7378 1.541310 CCGTCCCTGTGGTTGCTAGA 61.541 60.000 0.00 0.00 0.00 2.43
5475 7380 1.270625 CGTCCCTGTGGTTGCTAGAAA 60.271 52.381 0.00 0.00 0.00 2.52
5476 7381 2.152016 GTCCCTGTGGTTGCTAGAAAC 58.848 52.381 4.85 4.85 0.00 2.78
5477 7382 2.054799 TCCCTGTGGTTGCTAGAAACT 58.945 47.619 13.46 0.00 0.00 2.66
5478 7383 2.038557 TCCCTGTGGTTGCTAGAAACTC 59.961 50.000 13.46 7.76 0.00 3.01
5479 7384 2.069273 CCTGTGGTTGCTAGAAACTCG 58.931 52.381 13.46 0.25 0.00 4.18
5480 7385 2.069273 CTGTGGTTGCTAGAAACTCGG 58.931 52.381 13.46 8.30 0.00 4.63
5482 7387 2.288825 TGTGGTTGCTAGAAACTCGGAG 60.289 50.000 13.46 2.83 0.00 4.63
5483 7388 1.275291 TGGTTGCTAGAAACTCGGAGG 59.725 52.381 13.46 0.00 0.00 4.30
5484 7389 1.405661 GGTTGCTAGAAACTCGGAGGG 60.406 57.143 13.46 0.00 0.00 4.30
5503 7408 1.501741 CCGGTTCATTGGTGCTTCG 59.498 57.895 0.00 0.00 0.00 3.79
5515 7420 0.577269 GTGCTTCGGCGATCATGTAC 59.423 55.000 11.76 7.73 45.37 2.90
5598 7503 2.099263 GCAGAGTACATCCTCGCAAGTA 59.901 50.000 0.00 0.00 36.56 2.24
5602 7507 5.062308 CAGAGTACATCCTCGCAAGTAAAAC 59.938 44.000 0.00 0.00 36.56 2.43
5616 7521 5.591099 CAAGTAAAACTGTGGTTGCAAGAT 58.409 37.500 0.00 0.00 35.63 2.40
5624 7529 3.664107 TGTGGTTGCAAGATACTGTCTC 58.336 45.455 0.00 0.00 35.67 3.36
5664 8229 3.390135 GCAGGTACTTTTCCTTTTTGCC 58.610 45.455 0.00 0.00 34.60 4.52
5687 8252 1.729586 TGTCTCCTGGCAGGTACTTT 58.270 50.000 31.60 0.00 34.60 2.66
5702 8267 6.927381 GCAGGTACTTTTAATCTAGCCGATTA 59.073 38.462 0.00 2.79 39.18 1.75
5705 8270 8.702819 AGGTACTTTTAATCTAGCCGATTACTT 58.297 33.333 5.75 0.00 38.95 2.24
5723 8288 8.463607 CGATTACTTAAAATTTAGCCCCTCAAA 58.536 33.333 0.00 0.00 0.00 2.69
5807 8372 7.615582 ACACTGGTTGTAATAACATCTCATG 57.384 36.000 0.00 0.00 36.32 3.07
5822 8387 6.821388 ACATCTCATGTTATAGGTTGGAGTC 58.179 40.000 0.00 0.00 41.63 3.36
5862 8427 3.845781 TCTGGCCAATCCTTCTACATC 57.154 47.619 7.01 0.00 35.26 3.06
5865 8430 4.133078 CTGGCCAATCCTTCTACATCTTC 58.867 47.826 7.01 0.00 35.26 2.87
5866 8431 3.523157 TGGCCAATCCTTCTACATCTTCA 59.477 43.478 0.61 0.00 35.26 3.02
5868 8433 5.369404 TGGCCAATCCTTCTACATCTTCATA 59.631 40.000 0.61 0.00 35.26 2.15
5869 8434 5.703130 GGCCAATCCTTCTACATCTTCATAC 59.297 44.000 0.00 0.00 0.00 2.39
5870 8435 6.465035 GGCCAATCCTTCTACATCTTCATACT 60.465 42.308 0.00 0.00 0.00 2.12
5880 8451 4.712476 ACATCTTCATACTCCATTCCAGC 58.288 43.478 0.00 0.00 0.00 4.85
5882 8453 5.604231 ACATCTTCATACTCCATTCCAGCTA 59.396 40.000 0.00 0.00 0.00 3.32
5893 8464 4.823442 TCCATTCCAGCTACATATTTGCAG 59.177 41.667 0.00 0.00 0.00 4.41
5924 8495 9.642343 ATTAAATCCAAAATTAGTACTCCCTCC 57.358 33.333 0.00 0.00 0.00 4.30
5925 8496 4.748277 TCCAAAATTAGTACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
5926 8497 4.098894 TCCAAAATTAGTACTCCCTCCGT 58.901 43.478 0.00 0.00 0.00 4.69
5927 8498 5.271598 TCCAAAATTAGTACTCCCTCCGTA 58.728 41.667 0.00 0.00 0.00 4.02
5928 8499 5.721000 TCCAAAATTAGTACTCCCTCCGTAA 59.279 40.000 0.00 0.00 0.00 3.18
5929 8500 6.213195 TCCAAAATTAGTACTCCCTCCGTAAA 59.787 38.462 0.00 0.00 0.00 2.01
5930 8501 6.314648 CCAAAATTAGTACTCCCTCCGTAAAC 59.685 42.308 0.00 0.00 0.00 2.01
5931 8502 6.864151 AAATTAGTACTCCCTCCGTAAACT 57.136 37.500 0.00 0.00 0.00 2.66
5932 8503 7.961326 AAATTAGTACTCCCTCCGTAAACTA 57.039 36.000 0.00 0.00 0.00 2.24
5933 8504 7.961326 AATTAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
5934 8505 8.544687 AATTAGTACTCCCTCCGTAAACTAAT 57.455 34.615 0.00 0.00 31.64 1.73
5935 8506 9.646522 AATTAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 30.61 0.98
5936 8507 9.819754 ATTAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
5939 8510 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
5940 8511 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5941 8512 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5942 8513 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
5943 8514 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
5944 8515 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
5945 8516 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
5946 8517 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
5947 8518 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
5948 8519 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
5949 8520 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
5955 8526 9.900710 ACTAATATAAGAGCGTTTAGATCACTG 57.099 33.333 0.00 0.00 37.82 3.66
5958 8529 4.792521 AAGAGCGTTTAGATCACTGAGT 57.207 40.909 0.00 0.00 37.82 3.41
5959 8530 4.103365 AGAGCGTTTAGATCACTGAGTG 57.897 45.455 6.18 6.18 37.82 3.51
5960 8531 3.759086 AGAGCGTTTAGATCACTGAGTGA 59.241 43.478 18.64 18.64 46.90 3.41
5971 8542 4.098055 TCACTGAGTGATCTAAACGCTC 57.902 45.455 11.93 0.00 42.80 5.03
5972 8543 3.759086 TCACTGAGTGATCTAAACGCTCT 59.241 43.478 11.93 0.00 42.89 4.09
5973 8544 4.218635 TCACTGAGTGATCTAAACGCTCTT 59.781 41.667 11.93 0.00 42.89 2.85
5974 8545 5.414765 TCACTGAGTGATCTAAACGCTCTTA 59.585 40.000 11.93 0.00 42.89 2.10
5975 8546 6.095580 TCACTGAGTGATCTAAACGCTCTTAT 59.904 38.462 11.93 0.00 42.89 1.73
5976 8547 7.282450 TCACTGAGTGATCTAAACGCTCTTATA 59.718 37.037 11.93 0.00 42.89 0.98
5977 8548 8.079203 CACTGAGTGATCTAAACGCTCTTATAT 58.921 37.037 6.79 0.00 42.89 0.86
5978 8549 8.634444 ACTGAGTGATCTAAACGCTCTTATATT 58.366 33.333 0.00 0.00 42.89 1.28
6015 8586 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
6016 8587 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
6017 8588 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
6018 8589 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
6019 8590 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
6020 8591 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
6046 8617 9.787435 AGTACTAATTAAGGTTCACACAATTCA 57.213 29.630 0.00 0.00 0.00 2.57
6065 8636 9.598517 ACAATTCACAAACATTACAAGTTCAAT 57.401 25.926 0.00 0.00 0.00 2.57
6066 8637 9.852481 CAATTCACAAACATTACAAGTTCAATG 57.148 29.630 5.53 5.53 37.99 2.82
6067 8638 9.598517 AATTCACAAACATTACAAGTTCAATGT 57.401 25.926 6.56 6.56 45.03 2.71
6108 8679 6.463360 ACAAATTCAAACACACCAAAGAGTT 58.537 32.000 0.00 0.00 0.00 3.01
6176 12033 2.684881 CTGTGAAGTGCTCAACAAGGTT 59.315 45.455 0.00 0.00 35.22 3.50
6193 12050 5.755849 CAAGGTTATCTTGGAGTTGGGTAT 58.244 41.667 0.00 0.00 46.81 2.73
6200 12057 5.319043 TCTTGGAGTTGGGTATGAACTTT 57.681 39.130 0.00 0.00 33.71 2.66
6204 12061 4.202377 TGGAGTTGGGTATGAACTTTTCGA 60.202 41.667 0.00 0.00 33.71 3.71
6206 12063 6.110707 GGAGTTGGGTATGAACTTTTCGATA 58.889 40.000 0.00 0.00 33.71 2.92
6209 12066 7.166167 AGTTGGGTATGAACTTTTCGATACTT 58.834 34.615 0.00 0.00 28.94 2.24
6210 12067 7.333672 AGTTGGGTATGAACTTTTCGATACTTC 59.666 37.037 0.00 0.00 28.94 3.01
6211 12068 5.808540 TGGGTATGAACTTTTCGATACTTCG 59.191 40.000 0.00 0.00 46.87 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.039327 CGAAGCTAGCTCGGATACAC 57.961 55.000 19.65 1.96 0.00 2.90
22 23 4.475135 GAGCACCTTCCCTCCGCC 62.475 72.222 0.00 0.00 0.00 6.13
23 24 4.475135 GGAGCACCTTCCCTCCGC 62.475 72.222 0.00 0.00 38.38 5.54
25 26 0.332972 AAATGGAGCACCTTCCCTCC 59.667 55.000 0.71 0.00 46.25 4.30
47 48 0.179169 GACGTGCGGAAGGAGTCTAC 60.179 60.000 0.00 0.00 31.00 2.59
67 68 2.157863 GGTTTCTTAGCTCTTGCACGTC 59.842 50.000 0.00 0.00 42.74 4.34
72 73 0.448197 GCGGGTTTCTTAGCTCTTGC 59.552 55.000 0.00 0.00 40.05 4.01
91 92 0.597568 TTTCGCTCATGCCTTTGTGG 59.402 50.000 0.00 0.00 39.35 4.17
92 93 2.095110 TCATTTCGCTCATGCCTTTGTG 60.095 45.455 0.00 0.00 35.36 3.33
104 109 4.261489 GCATCCATCAGAATTCATTTCGCT 60.261 41.667 8.44 0.00 39.46 4.93
136 141 2.743928 CTCGTGCCTGGCTGTTCC 60.744 66.667 21.03 1.79 0.00 3.62
146 151 0.807667 CTACCATGTCAGCTCGTGCC 60.808 60.000 5.73 0.00 40.80 5.01
193 198 2.034179 TCGTAATACTCCACATCCGCAG 59.966 50.000 0.00 0.00 0.00 5.18
225 230 4.271049 TCTTTTCGTGCATCTATTAGCTGC 59.729 41.667 11.66 11.66 37.82 5.25
257 264 3.949132 TCCGGATGATGACAATTGACAA 58.051 40.909 13.59 0.00 0.00 3.18
258 265 3.625649 TCCGGATGATGACAATTGACA 57.374 42.857 13.59 13.18 0.00 3.58
287 294 2.203422 TTTCCACTTGCCGGGGTG 60.203 61.111 2.18 0.00 0.00 4.61
290 297 1.228124 TCACTTTCCACTTGCCGGG 60.228 57.895 2.18 0.00 0.00 5.73
323 330 2.010145 ATTTCACCGTCACGATGAGG 57.990 50.000 0.00 0.00 32.49 3.86
334 341 3.242739 CGCCTTCTTCCATTATTTCACCG 60.243 47.826 0.00 0.00 0.00 4.94
455 462 3.572584 CTCGTAAGCGGTAACCCATATC 58.427 50.000 0.00 0.00 38.89 1.63
471 546 1.378882 ATTCCGGTGCTACGCTCGTA 61.379 55.000 0.00 2.02 0.00 3.43
499 574 2.840176 CGCGCTTGCTTAATGTTACTTG 59.160 45.455 5.56 0.00 36.08 3.16
518 599 1.188863 TACTTAGAACCCACCTCCGC 58.811 55.000 0.00 0.00 0.00 5.54
595 682 2.313317 CCATTGATTAGCAGCCACCAT 58.687 47.619 0.00 0.00 0.00 3.55
596 683 1.685803 CCCATTGATTAGCAGCCACCA 60.686 52.381 0.00 0.00 0.00 4.17
597 684 1.035139 CCCATTGATTAGCAGCCACC 58.965 55.000 0.00 0.00 0.00 4.61
599 686 0.033306 TGCCCATTGATTAGCAGCCA 60.033 50.000 0.00 0.00 0.00 4.75
600 687 0.386838 GTGCCCATTGATTAGCAGCC 59.613 55.000 0.00 0.00 35.56 4.85
601 688 0.386838 GGTGCCCATTGATTAGCAGC 59.613 55.000 0.00 0.00 45.16 5.25
602 689 1.679680 CAGGTGCCCATTGATTAGCAG 59.320 52.381 0.00 0.00 35.56 4.24
605 692 1.679680 CTGCAGGTGCCCATTGATTAG 59.320 52.381 5.57 0.00 41.18 1.73
606 693 1.005805 ACTGCAGGTGCCCATTGATTA 59.994 47.619 19.93 0.00 41.18 1.75
607 694 0.251922 ACTGCAGGTGCCCATTGATT 60.252 50.000 19.93 0.00 41.18 2.57
608 695 0.682209 GACTGCAGGTGCCCATTGAT 60.682 55.000 19.93 0.00 41.18 2.57
609 696 1.303561 GACTGCAGGTGCCCATTGA 60.304 57.895 19.93 0.00 41.18 2.57
610 697 2.345760 GGACTGCAGGTGCCCATTG 61.346 63.158 19.93 0.00 41.18 2.82
611 698 2.036256 GGACTGCAGGTGCCCATT 59.964 61.111 19.93 0.00 41.18 3.16
612 699 2.159101 AATGGACTGCAGGTGCCCAT 62.159 55.000 19.93 19.79 40.64 4.00
613 700 2.769652 GAATGGACTGCAGGTGCCCA 62.770 60.000 19.93 18.48 41.18 5.36
614 701 2.036256 AATGGACTGCAGGTGCCC 59.964 61.111 19.93 13.48 41.18 5.36
615 702 0.895100 TTGAATGGACTGCAGGTGCC 60.895 55.000 19.93 16.29 41.18 5.01
616 703 0.961019 TTTGAATGGACTGCAGGTGC 59.039 50.000 19.93 9.61 42.50 5.01
637 724 1.659491 CGACCGTAACGATCCGATCAG 60.659 57.143 9.07 4.33 0.00 2.90
672 759 3.073062 AGTTCCACAACTGGCTTATCTGT 59.927 43.478 0.00 0.00 41.64 3.41
673 760 3.679389 AGTTCCACAACTGGCTTATCTG 58.321 45.455 0.00 0.00 41.64 2.90
789 892 3.020984 TCATGTAGGCTGTATCGTGTCA 58.979 45.455 0.00 0.00 0.00 3.58
808 911 0.384309 GGATATGTGTCCGCGAGTCA 59.616 55.000 8.23 0.00 0.00 3.41
929 1049 3.073101 GTTCCGGCGGGGTACTCT 61.073 66.667 27.98 0.00 33.55 3.24
953 1073 3.400590 GTCGCCGTCGTTTTCGCT 61.401 61.111 0.00 0.00 43.73 4.93
999 1119 4.157120 AGGGCGGGGAATCGTTCG 62.157 66.667 0.00 0.00 0.00 3.95
1000 1120 2.203029 GAGGGCGGGGAATCGTTC 60.203 66.667 0.00 0.00 0.00 3.95
1001 1121 4.157120 CGAGGGCGGGGAATCGTT 62.157 66.667 0.00 0.00 0.00 3.85
1004 1124 4.610714 GCTCGAGGGCGGGGAATC 62.611 72.222 15.58 0.00 38.79 2.52
1152 1292 4.603946 GACACGGATAGGGGCGGC 62.604 72.222 0.00 0.00 0.00 6.53
1194 1342 1.594331 CGACTTTATTAGGCCAGGGC 58.406 55.000 5.01 4.33 41.06 5.19
1195 1343 1.814248 GCCGACTTTATTAGGCCAGGG 60.814 57.143 5.01 0.00 43.54 4.45
1196 1344 1.594331 GCCGACTTTATTAGGCCAGG 58.406 55.000 5.01 0.00 43.54 4.45
1261 1409 4.070552 GCCGGACGCTGAGGAAGT 62.071 66.667 5.05 0.00 0.00 3.01
1277 1425 2.976185 AGGAAGAAGAAGCTATAGGGGC 59.024 50.000 1.04 0.00 0.00 5.80
1282 1430 3.068307 GTGGCGAGGAAGAAGAAGCTATA 59.932 47.826 0.00 0.00 0.00 1.31
1283 1431 2.111384 TGGCGAGGAAGAAGAAGCTAT 58.889 47.619 0.00 0.00 0.00 2.97
1284 1432 1.204941 GTGGCGAGGAAGAAGAAGCTA 59.795 52.381 0.00 0.00 0.00 3.32
1285 1433 0.036858 GTGGCGAGGAAGAAGAAGCT 60.037 55.000 0.00 0.00 0.00 3.74
1294 1451 2.172483 GAGCTTGAGGTGGCGAGGAA 62.172 60.000 0.00 0.00 0.00 3.36
1363 1520 2.436115 GCGGGTAGGGTTGCTGTC 60.436 66.667 0.00 0.00 0.00 3.51
1366 1523 4.078516 GACGCGGGTAGGGTTGCT 62.079 66.667 12.47 0.00 46.65 3.91
1410 1571 4.974721 AACCTGGCAGCCCAACCG 62.975 66.667 9.64 0.00 41.58 4.44
1413 1592 2.203625 GGAAACCTGGCAGCCCAA 60.204 61.111 9.64 0.00 41.58 4.12
1416 1595 0.827507 TTGAAGGAAACCTGGCAGCC 60.828 55.000 9.56 3.66 32.13 4.85
1418 1597 1.821136 GGATTGAAGGAAACCTGGCAG 59.179 52.381 7.75 7.75 32.13 4.85
1419 1598 1.428912 AGGATTGAAGGAAACCTGGCA 59.571 47.619 0.00 0.00 32.13 4.92
1422 1601 4.202243 TGCAAAAGGATTGAAGGAAACCTG 60.202 41.667 0.00 0.00 32.13 4.00
1435 1614 3.575256 TGAGCAACAATCTGCAAAAGGAT 59.425 39.130 0.00 0.00 45.18 3.24
1436 1615 2.957680 TGAGCAACAATCTGCAAAAGGA 59.042 40.909 0.00 0.00 45.18 3.36
1437 1616 3.374220 TGAGCAACAATCTGCAAAAGG 57.626 42.857 0.00 0.00 45.18 3.11
1438 1617 4.365723 ACTTGAGCAACAATCTGCAAAAG 58.634 39.130 0.00 4.03 45.18 2.27
1441 1620 4.362279 GAAACTTGAGCAACAATCTGCAA 58.638 39.130 0.00 0.00 45.18 4.08
1443 1622 2.975851 CGAAACTTGAGCAACAATCTGC 59.024 45.455 0.00 0.00 42.97 4.26
1444 1623 3.558505 CCGAAACTTGAGCAACAATCTG 58.441 45.455 0.00 0.00 37.88 2.90
1445 1624 2.554032 CCCGAAACTTGAGCAACAATCT 59.446 45.455 0.00 0.00 37.88 2.40
1446 1625 2.922335 GCCCGAAACTTGAGCAACAATC 60.922 50.000 0.00 0.00 37.88 2.67
1447 1626 1.000274 GCCCGAAACTTGAGCAACAAT 60.000 47.619 0.00 0.00 37.88 2.71
1478 1764 0.319900 CGGATAATCGGGGAGCACAG 60.320 60.000 0.00 0.00 0.00 3.66
1521 1807 1.137086 TGCAGAAATCGAGGTCCTAGC 59.863 52.381 0.00 0.00 0.00 3.42
1522 1808 3.190874 GTTGCAGAAATCGAGGTCCTAG 58.809 50.000 0.00 0.00 0.00 3.02
1526 1812 2.100605 AGGTTGCAGAAATCGAGGTC 57.899 50.000 0.00 0.00 0.00 3.85
1570 1857 3.812609 TCAGCAAAGCAATAAAGTCGTCA 59.187 39.130 0.00 0.00 0.00 4.35
1572 1859 4.455533 TGATCAGCAAAGCAATAAAGTCGT 59.544 37.500 0.00 0.00 0.00 4.34
1575 1862 7.212274 ACTTTTGATCAGCAAAGCAATAAAGT 58.788 30.769 16.43 12.35 46.38 2.66
1665 1952 6.539649 TCACAATTAGACAGCAAACTACAC 57.460 37.500 0.00 0.00 0.00 2.90
1681 1968 7.178274 TGGATTTACTACTTGCCAATCACAATT 59.822 33.333 0.00 0.00 0.00 2.32
1689 1976 3.761752 GGCTTGGATTTACTACTTGCCAA 59.238 43.478 0.00 0.00 37.91 4.52
1726 2018 1.985159 AGAACTCTACCAACATGGGCA 59.015 47.619 0.00 0.00 43.37 5.36
1727 2019 2.789409 AGAACTCTACCAACATGGGC 57.211 50.000 0.00 0.00 43.37 5.36
1728 2020 7.125792 ACTTATAGAACTCTACCAACATGGG 57.874 40.000 0.00 0.00 43.37 4.00
1729 2021 7.861372 CGTACTTATAGAACTCTACCAACATGG 59.139 40.741 0.00 0.00 45.02 3.66
1730 2022 7.378995 GCGTACTTATAGAACTCTACCAACATG 59.621 40.741 0.00 0.00 0.00 3.21
1731 2023 7.067859 TGCGTACTTATAGAACTCTACCAACAT 59.932 37.037 0.00 0.00 0.00 2.71
1732 2024 6.375174 TGCGTACTTATAGAACTCTACCAACA 59.625 38.462 0.00 0.00 0.00 3.33
1733 2025 6.690528 GTGCGTACTTATAGAACTCTACCAAC 59.309 42.308 0.00 0.00 0.00 3.77
1814 2106 4.776322 TTCGTCGCATGGCAGGGG 62.776 66.667 10.16 10.16 0.00 4.79
2098 2395 2.595536 GCGCACATAACAGCAAAGATTG 59.404 45.455 0.30 0.00 0.00 2.67
2119 2418 8.450578 TGCTACCAATACAGAATTATCCAAAG 57.549 34.615 0.00 0.00 0.00 2.77
2129 2428 3.838317 AGGACACTGCTACCAATACAGAA 59.162 43.478 0.00 0.00 35.38 3.02
2156 2455 4.653868 TGGCATGGCAATCAAGAAAATTT 58.346 34.783 21.13 0.00 0.00 1.82
2157 2456 4.289238 TGGCATGGCAATCAAGAAAATT 57.711 36.364 21.13 0.00 0.00 1.82
2172 2471 1.001268 GCTGCATTCAGAGATGGCATG 60.001 52.381 3.81 0.00 42.95 4.06
2178 2477 4.815308 GTGATAACAGCTGCATTCAGAGAT 59.185 41.667 15.27 0.00 42.95 2.75
2219 2518 2.260481 CTAACTTTTCGACCTCCGCTC 58.740 52.381 0.00 0.00 38.37 5.03
2258 2557 8.926374 TCCAATCAATAAAATGCAATCCTACAT 58.074 29.630 0.00 0.00 0.00 2.29
2259 2558 8.303780 TCCAATCAATAAAATGCAATCCTACA 57.696 30.769 0.00 0.00 0.00 2.74
2260 2559 9.768662 AATCCAATCAATAAAATGCAATCCTAC 57.231 29.630 0.00 0.00 0.00 3.18
2262 2561 7.227910 GCAATCCAATCAATAAAATGCAATCCT 59.772 33.333 0.00 0.00 0.00 3.24
2264 2563 7.227910 AGGCAATCCAATCAATAAAATGCAATC 59.772 33.333 0.00 0.00 33.14 2.67
2265 2564 7.012894 CAGGCAATCCAATCAATAAAATGCAAT 59.987 33.333 0.00 0.00 33.14 3.56
2267 2566 5.818336 CAGGCAATCCAATCAATAAAATGCA 59.182 36.000 0.00 0.00 33.14 3.96
2268 2567 5.818857 ACAGGCAATCCAATCAATAAAATGC 59.181 36.000 0.00 0.00 33.74 3.56
2269 2568 8.819974 GTTACAGGCAATCCAATCAATAAAATG 58.180 33.333 0.00 0.00 33.74 2.32
2270 2569 8.761689 AGTTACAGGCAATCCAATCAATAAAAT 58.238 29.630 0.00 0.00 33.74 1.82
2463 2771 0.031721 GCATAAGCAGCTCCATTGGC 59.968 55.000 0.00 0.00 41.58 4.52
2549 2857 2.493030 CCCATCCTAACGCGTCGT 59.507 61.111 14.44 0.00 43.97 4.34
2571 2879 7.037586 ACTCACCATGAAAGGGAAAGATTAGTA 60.038 37.037 0.00 0.00 43.46 1.82
2586 2894 4.954202 AGATACGGAGTTACTCACCATGAA 59.046 41.667 14.72 0.00 37.78 2.57
2602 2910 6.518493 AGAACTACTAGACTGAGAGATACGG 58.482 44.000 0.00 0.00 0.00 4.02
2621 2929 0.390860 ACGTGCTGCTCTGAAGAACT 59.609 50.000 0.00 0.00 0.00 3.01
2622 2930 0.510359 CACGTGCTGCTCTGAAGAAC 59.490 55.000 0.82 0.00 0.00 3.01
2623 2931 0.104855 ACACGTGCTGCTCTGAAGAA 59.895 50.000 17.22 0.00 0.00 2.52
2638 2946 5.229887 CCTCACATGAACAAAAGAAAACACG 59.770 40.000 0.00 0.00 0.00 4.49
2649 2957 1.971167 GCCCGCCTCACATGAACAA 60.971 57.895 0.00 0.00 0.00 2.83
2655 2963 0.323725 AAATTCAGCCCGCCTCACAT 60.324 50.000 0.00 0.00 0.00 3.21
2661 2969 0.316841 TGAACAAAATTCAGCCCGCC 59.683 50.000 0.00 0.00 0.00 6.13
2663 2971 3.090952 TGTTGAACAAAATTCAGCCCG 57.909 42.857 0.00 0.00 0.00 6.13
2692 3000 3.244805 GGCTCCCTTTACCTAAAGTGTGT 60.245 47.826 4.50 0.00 40.73 3.72
2723 3034 9.729281 AGCCAGATTAAATCATTTCAACAAATT 57.271 25.926 0.00 0.00 28.97 1.82
2743 3054 7.925043 TCACCGTTTAATAATTAAAGCCAGA 57.075 32.000 0.00 0.00 35.91 3.86
2767 3078 5.474578 TTCTCAGTTCAAGAGCTACACAT 57.525 39.130 0.00 0.00 33.15 3.21
2770 3081 6.524734 TGAATTTCTCAGTTCAAGAGCTACA 58.475 36.000 0.00 0.00 31.85 2.74
2798 3110 7.060120 GTCTAGTAAGAGCGACATGTTGTCAA 61.060 42.308 14.64 2.02 38.73 3.18
2804 3116 2.355132 CCGTCTAGTAAGAGCGACATGT 59.645 50.000 0.00 0.00 31.86 3.21
2849 3196 6.492087 TGTTTGGTTACTTTTCCTATGAAGGG 59.508 38.462 0.00 0.00 43.84 3.95
2874 3221 1.072331 AGAACGAGTTGAAGCCCATGT 59.928 47.619 0.00 0.00 0.00 3.21
2882 3229 1.124780 TGGGTGGAGAACGAGTTGAA 58.875 50.000 0.00 0.00 0.00 2.69
2949 3299 6.377327 AATCGACATGTTGTTTTCAGAACT 57.623 33.333 12.90 0.00 0.00 3.01
2963 3313 7.698836 TGACTCATACAACATAATCGACATG 57.301 36.000 7.18 7.18 0.00 3.21
2965 3315 7.520119 GTTGACTCATACAACATAATCGACA 57.480 36.000 0.00 0.00 44.49 4.35
3012 3671 4.460948 TCCACGGTAGAAAGTGATAACC 57.539 45.455 0.00 0.00 40.56 2.85
3027 3686 1.568612 GGATACGCATGCATCCACGG 61.569 60.000 25.01 8.29 40.48 4.94
3029 3688 0.250467 AGGGATACGCATGCATCCAC 60.250 55.000 28.72 20.67 42.22 4.02
3033 3692 0.469494 TGTGAGGGATACGCATGCAT 59.531 50.000 19.57 4.54 37.60 3.96
3035 3694 1.597742 ATTGTGAGGGATACGCATGC 58.402 50.000 7.91 7.91 37.60 4.06
3152 3812 1.472728 GGCGACCGGTTTATCATGAGT 60.473 52.381 9.42 0.00 0.00 3.41
3166 3826 1.445871 AAATTTACTGACCGGCGACC 58.554 50.000 9.30 0.00 0.00 4.79
3167 3827 3.928375 TCTAAAATTTACTGACCGGCGAC 59.072 43.478 9.30 2.28 0.00 5.19
3168 3828 4.191033 TCTAAAATTTACTGACCGGCGA 57.809 40.909 9.30 0.00 0.00 5.54
3169 3829 4.201783 CCTTCTAAAATTTACTGACCGGCG 60.202 45.833 0.00 0.00 0.00 6.46
3170 3830 4.939439 TCCTTCTAAAATTTACTGACCGGC 59.061 41.667 0.00 0.00 0.00 6.13
3203 3863 7.620555 ACATTTGATGGTGCTCCTTAGGGAG 62.621 48.000 16.47 16.47 46.93 4.30
3209 3869 3.763897 GGTTACATTTGATGGTGCTCCTT 59.236 43.478 6.34 0.00 34.23 3.36
3213 3873 5.806654 AAAAGGTTACATTTGATGGTGCT 57.193 34.783 0.00 0.00 33.60 4.40
3220 3880 7.989416 AACGGAGATAAAAGGTTACATTTGA 57.011 32.000 0.00 0.00 0.00 2.69
3266 3931 8.231692 TCTTTACAGGAAACATCAAAATGACA 57.768 30.769 0.00 0.00 36.67 3.58
3287 3952 9.768662 GGATGGATGCAAATAATGTATTTCTTT 57.231 29.630 0.00 0.00 36.29 2.52
3306 3980 3.713764 CCAGTAGACAAGGAAGGATGGAT 59.286 47.826 0.00 0.00 0.00 3.41
3334 4008 9.249457 GAGATGTTATATCTGAAACGATGTCAA 57.751 33.333 0.00 0.00 0.00 3.18
3338 4012 9.689976 AGAAGAGATGTTATATCTGAAACGATG 57.310 33.333 0.00 0.00 29.98 3.84
3366 4042 2.470057 GGGGGAGAGAGAGAGAACAT 57.530 55.000 0.00 0.00 0.00 2.71
3382 4058 5.478679 TGTACATGTGAGTTAAAAATGGGGG 59.521 40.000 9.11 0.00 0.00 5.40
3383 4059 6.015856 TGTGTACATGTGAGTTAAAAATGGGG 60.016 38.462 9.11 0.00 0.00 4.96
3384 4060 6.976088 TGTGTACATGTGAGTTAAAAATGGG 58.024 36.000 9.11 0.00 0.00 4.00
3385 4061 6.582295 GCTGTGTACATGTGAGTTAAAAATGG 59.418 38.462 9.11 0.00 0.00 3.16
3392 4068 4.314961 CTTGGCTGTGTACATGTGAGTTA 58.685 43.478 9.11 0.00 0.00 2.24
3409 4085 2.420058 ATACACTGGTAAGGCTTGGC 57.580 50.000 10.69 2.43 32.19 4.52
3462 4139 6.053005 TCTAAAAAGTACAGACCACCAACAG 58.947 40.000 0.00 0.00 0.00 3.16
3502 4262 5.336372 GCACCTGCAGATGGTACAAATTTAA 60.336 40.000 17.39 0.00 41.62 1.52
3616 4376 1.734047 GCCTCTACTGCACTGTCTTCG 60.734 57.143 0.00 0.00 0.00 3.79
3703 4463 4.504165 CCATTGGCCAATGCATACAATGAT 60.504 41.667 41.35 12.83 45.06 2.45
3875 4635 6.686484 AAGAAAATCCTGGGTTAAGCAAAT 57.314 33.333 7.03 0.00 0.00 2.32
3878 4638 4.705023 GCTAAGAAAATCCTGGGTTAAGCA 59.295 41.667 7.03 0.00 0.00 3.91
4095 4858 5.455525 GCAAAGAACAAATCGTATATGTGGC 59.544 40.000 0.00 0.00 0.00 5.01
4119 4882 5.821470 AGTCAATGAAGAGCAATAGGTCATG 59.179 40.000 0.00 0.00 44.60 3.07
4122 4885 6.578023 ACTAGTCAATGAAGAGCAATAGGTC 58.422 40.000 0.00 0.00 42.53 3.85
4214 4977 6.407202 AGTGCAACCTAGAAGATTACGAATT 58.593 36.000 0.00 0.00 37.80 2.17
4218 4982 6.307155 CAAAAGTGCAACCTAGAAGATTACG 58.693 40.000 0.00 0.00 37.80 3.18
4282 5178 5.164031 GCGTCTCAAAATCATGTACGTACAA 60.164 40.000 30.46 16.86 39.99 2.41
4304 5321 7.867445 AAATATTAACAGTTGGTTGAAAGCG 57.133 32.000 0.00 0.00 40.73 4.68
4333 5350 8.908903 TGGCAACCTATAAATATTAACAGTTGG 58.091 33.333 14.76 0.00 34.20 3.77
4345 5362 7.179269 TGGTTTTCTAGTGGCAACCTATAAAT 58.821 34.615 12.93 0.00 39.64 1.40
4348 5365 5.765576 TGGTTTTCTAGTGGCAACCTATA 57.234 39.130 12.93 0.00 39.64 1.31
4350 5367 4.440826 TTGGTTTTCTAGTGGCAACCTA 57.559 40.909 12.93 0.00 39.64 3.08
4352 5369 4.157840 CCTATTGGTTTTCTAGTGGCAACC 59.842 45.833 0.00 0.00 39.41 3.77
4353 5370 5.007682 TCCTATTGGTTTTCTAGTGGCAAC 58.992 41.667 0.00 0.00 34.23 4.17
4354 5371 5.249780 TCCTATTGGTTTTCTAGTGGCAA 57.750 39.130 0.00 0.00 34.23 4.52
4355 5372 4.843728 CTCCTATTGGTTTTCTAGTGGCA 58.156 43.478 0.00 0.00 34.23 4.92
4362 5379 9.566432 CATTATCTTAGCTCCTATTGGTTTTCT 57.434 33.333 0.00 0.00 34.23 2.52
4422 5649 7.119262 CAGTGAAAGATCGGGTACAATTAACTT 59.881 37.037 0.00 0.00 0.00 2.66
4425 5652 5.353123 GCAGTGAAAGATCGGGTACAATTAA 59.647 40.000 0.00 0.00 0.00 1.40
4636 5934 2.875672 GCACTGGCTGATGTTCAGGTTA 60.876 50.000 6.64 0.00 44.43 2.85
4848 6146 2.179547 CCAAGAGCGCACACACACA 61.180 57.895 11.47 0.00 0.00 3.72
4849 6147 1.714899 AACCAAGAGCGCACACACAC 61.715 55.000 11.47 0.00 0.00 3.82
4850 6148 1.436195 GAACCAAGAGCGCACACACA 61.436 55.000 11.47 0.00 0.00 3.72
4851 6149 1.279840 GAACCAAGAGCGCACACAC 59.720 57.895 11.47 0.00 0.00 3.82
4852 6150 1.891919 GGAACCAAGAGCGCACACA 60.892 57.895 11.47 0.00 0.00 3.72
4853 6151 2.946762 GGAACCAAGAGCGCACAC 59.053 61.111 11.47 0.00 0.00 3.82
4854 6152 2.664851 CGGAACCAAGAGCGCACA 60.665 61.111 11.47 0.00 0.00 4.57
4855 6153 3.423154 CCGGAACCAAGAGCGCAC 61.423 66.667 11.47 2.25 0.00 5.34
4945 6593 8.147244 AGTCCTACTACAACATTACATTTCCT 57.853 34.615 0.00 0.00 0.00 3.36
5071 6757 4.165180 TGATCCCCAGAATCAAACCGATAA 59.835 41.667 0.00 0.00 32.51 1.75
5073 6759 2.509548 TGATCCCCAGAATCAAACCGAT 59.490 45.455 0.00 0.00 35.12 4.18
5080 6766 4.626287 GCAAACTACTGATCCCCAGAATCA 60.626 45.833 0.00 0.00 45.78 2.57
5110 6800 5.013079 CAGTTTCTGCCCATATATCACCCTA 59.987 44.000 0.00 0.00 0.00 3.53
5111 6801 3.983410 AGTTTCTGCCCATATATCACCCT 59.017 43.478 0.00 0.00 0.00 4.34
5113 6803 4.074970 CCAGTTTCTGCCCATATATCACC 58.925 47.826 0.00 0.00 0.00 4.02
5114 6804 4.718961 ACCAGTTTCTGCCCATATATCAC 58.281 43.478 0.00 0.00 0.00 3.06
5115 6805 5.132502 CAACCAGTTTCTGCCCATATATCA 58.867 41.667 0.00 0.00 0.00 2.15
5116 6806 5.133221 ACAACCAGTTTCTGCCCATATATC 58.867 41.667 0.00 0.00 0.00 1.63
5117 6807 5.129368 ACAACCAGTTTCTGCCCATATAT 57.871 39.130 0.00 0.00 0.00 0.86
5118 6808 4.584638 ACAACCAGTTTCTGCCCATATA 57.415 40.909 0.00 0.00 0.00 0.86
5121 6811 2.086610 AACAACCAGTTTCTGCCCAT 57.913 45.000 0.00 0.00 37.03 4.00
5131 6821 3.320826 GCCATTTCTACCAAACAACCAGT 59.679 43.478 0.00 0.00 0.00 4.00
5139 6829 5.336372 CGGAAAAGATGCCATTTCTACCAAA 60.336 40.000 0.00 0.00 36.15 3.28
5140 6830 4.157656 CGGAAAAGATGCCATTTCTACCAA 59.842 41.667 0.00 0.00 36.15 3.67
5141 6831 3.694072 CGGAAAAGATGCCATTTCTACCA 59.306 43.478 0.00 0.00 36.15 3.25
5142 6832 3.489229 GCGGAAAAGATGCCATTTCTACC 60.489 47.826 0.00 0.00 36.15 3.18
5143 6833 3.695816 GCGGAAAAGATGCCATTTCTAC 58.304 45.455 0.00 0.00 36.15 2.59
5145 6835 2.947448 GCGGAAAAGATGCCATTTCT 57.053 45.000 0.00 0.00 36.15 2.52
5152 6842 0.678048 AGACCAGGCGGAAAAGATGC 60.678 55.000 2.43 0.00 35.59 3.91
5153 6843 1.089920 CAGACCAGGCGGAAAAGATG 58.910 55.000 2.43 0.00 35.59 2.90
5154 6844 0.693049 ACAGACCAGGCGGAAAAGAT 59.307 50.000 2.43 0.00 35.59 2.40
5155 6845 0.250295 CACAGACCAGGCGGAAAAGA 60.250 55.000 2.43 0.00 35.59 2.52
5156 6846 0.535102 ACACAGACCAGGCGGAAAAG 60.535 55.000 2.43 0.00 35.59 2.27
5157 6847 0.759959 TACACAGACCAGGCGGAAAA 59.240 50.000 2.43 0.00 35.59 2.29
5158 6848 0.981183 ATACACAGACCAGGCGGAAA 59.019 50.000 2.43 0.00 35.59 3.13
5159 6849 0.535335 GATACACAGACCAGGCGGAA 59.465 55.000 2.43 0.00 35.59 4.30
5160 6850 1.663379 CGATACACAGACCAGGCGGA 61.663 60.000 2.43 0.00 35.59 5.54
5161 6851 1.226974 CGATACACAGACCAGGCGG 60.227 63.158 0.00 0.00 38.77 6.13
5162 6852 1.226974 CCGATACACAGACCAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
5165 6855 1.757118 ACCATCCGATACACAGACCAG 59.243 52.381 0.00 0.00 0.00 4.00
5167 6857 1.806623 GCACCATCCGATACACAGACC 60.807 57.143 0.00 0.00 0.00 3.85
5173 6863 2.107366 TCTTGAGCACCATCCGATACA 58.893 47.619 0.00 0.00 0.00 2.29
5180 6870 4.540824 GAAACTTTGTCTTGAGCACCATC 58.459 43.478 0.00 0.00 0.00 3.51
5181 6871 3.003689 CGAAACTTTGTCTTGAGCACCAT 59.996 43.478 0.00 0.00 0.00 3.55
5184 6874 2.354821 ACCGAAACTTTGTCTTGAGCAC 59.645 45.455 0.00 0.00 0.00 4.40
5192 6882 5.816919 TGAATTCTCAACCGAAACTTTGTC 58.183 37.500 7.05 0.00 0.00 3.18
5231 6957 6.524734 TCGGTTCAGTCATATCATTTGCTAT 58.475 36.000 0.00 0.00 0.00 2.97
5233 6959 4.769688 TCGGTTCAGTCATATCATTTGCT 58.230 39.130 0.00 0.00 0.00 3.91
5246 6972 2.548067 CCAAGCAGTAGTTCGGTTCAGT 60.548 50.000 0.00 0.00 0.00 3.41
5251 6977 2.632987 AAACCAAGCAGTAGTTCGGT 57.367 45.000 0.00 0.00 0.00 4.69
5252 6978 3.982576 AAAAACCAAGCAGTAGTTCGG 57.017 42.857 0.00 0.00 0.00 4.30
5269 6995 6.790726 TGCTGAAGCGATTCAATCATGAAAAA 60.791 34.615 17.83 0.00 45.66 1.94
5270 6996 5.335819 TGCTGAAGCGATTCAATCATGAAAA 60.336 36.000 17.83 0.00 45.66 2.29
5271 6997 4.156373 TGCTGAAGCGATTCAATCATGAAA 59.844 37.500 17.83 0.00 45.66 2.69
5272 6998 3.690628 TGCTGAAGCGATTCAATCATGAA 59.309 39.130 17.83 0.00 46.16 2.57
5273 6999 3.272581 TGCTGAAGCGATTCAATCATGA 58.727 40.909 17.83 0.00 45.83 3.07
5274 7000 3.685836 TGCTGAAGCGATTCAATCATG 57.314 42.857 17.83 6.40 45.83 3.07
5299 7025 8.507470 AGCATAACAAAAACTTCGAAGAAATC 57.493 30.769 31.08 7.27 45.90 2.17
5308 7034 9.087424 GAATATCCCAAGCATAACAAAAACTTC 57.913 33.333 0.00 0.00 0.00 3.01
5316 7042 6.005823 CCTCATGAATATCCCAAGCATAACA 58.994 40.000 0.00 0.00 0.00 2.41
5324 7050 8.501904 TGAACTATTTCCTCATGAATATCCCAA 58.498 33.333 0.00 0.00 31.67 4.12
5326 7052 8.160106 ACTGAACTATTTCCTCATGAATATCCC 58.840 37.037 0.00 0.00 31.67 3.85
5329 7055 9.995003 GAGACTGAACTATTTCCTCATGAATAT 57.005 33.333 0.00 0.00 31.67 1.28
5330 7056 8.138074 CGAGACTGAACTATTTCCTCATGAATA 58.862 37.037 0.00 0.00 31.67 1.75
5331 7057 6.983307 CGAGACTGAACTATTTCCTCATGAAT 59.017 38.462 0.00 0.00 31.67 2.57
5332 7058 6.071334 ACGAGACTGAACTATTTCCTCATGAA 60.071 38.462 0.00 0.00 0.00 2.57
5334 7060 5.655488 ACGAGACTGAACTATTTCCTCATG 58.345 41.667 0.00 0.00 0.00 3.07
5335 7061 5.654650 AGACGAGACTGAACTATTTCCTCAT 59.345 40.000 0.00 0.00 0.00 2.90
5336 7062 5.010933 AGACGAGACTGAACTATTTCCTCA 58.989 41.667 0.00 0.00 0.00 3.86
5338 7064 4.767928 ACAGACGAGACTGAACTATTTCCT 59.232 41.667 9.33 0.00 40.63 3.36
5346 7248 2.656085 CACTGACAGACGAGACTGAAC 58.344 52.381 10.08 4.28 40.63 3.18
5356 7258 2.939103 ACAAAAGAGTGCACTGACAGAC 59.061 45.455 27.27 8.65 0.00 3.51
5360 7262 3.623060 TCTGAACAAAAGAGTGCACTGAC 59.377 43.478 27.27 11.18 0.00 3.51
5362 7264 4.095483 AGTTCTGAACAAAAGAGTGCACTG 59.905 41.667 27.27 13.10 0.00 3.66
5391 7296 2.158385 ACTCCATTGCTTACAAACCCCA 60.158 45.455 0.00 0.00 39.77 4.96
5397 7302 4.098914 AGTTCCACTCCATTGCTTACAA 57.901 40.909 0.00 0.00 40.87 2.41
5413 7318 3.898123 TGCATACTCATCCCTCTAGTTCC 59.102 47.826 0.00 0.00 0.00 3.62
5418 7323 3.251016 AGCTGCATACTCATCCCTCTA 57.749 47.619 1.02 0.00 0.00 2.43
5424 7329 5.118990 TCAACCTTAAGCTGCATACTCATC 58.881 41.667 1.02 0.00 0.00 2.92
5425 7330 5.102953 TCAACCTTAAGCTGCATACTCAT 57.897 39.130 1.02 0.00 0.00 2.90
5426 7331 4.551702 TCAACCTTAAGCTGCATACTCA 57.448 40.909 1.02 0.00 0.00 3.41
5427 7332 4.260948 GCATCAACCTTAAGCTGCATACTC 60.261 45.833 1.02 0.00 0.00 2.59
5428 7333 3.629398 GCATCAACCTTAAGCTGCATACT 59.371 43.478 1.02 0.00 0.00 2.12
5429 7334 3.546815 CGCATCAACCTTAAGCTGCATAC 60.547 47.826 1.02 0.00 0.00 2.39
5430 7335 2.613595 CGCATCAACCTTAAGCTGCATA 59.386 45.455 1.02 0.00 0.00 3.14
5431 7336 1.402968 CGCATCAACCTTAAGCTGCAT 59.597 47.619 1.02 0.00 0.00 3.96
5432 7337 0.804364 CGCATCAACCTTAAGCTGCA 59.196 50.000 1.02 0.00 0.00 4.41
5434 7339 2.159517 GGAACGCATCAACCTTAAGCTG 60.160 50.000 0.00 0.00 0.00 4.24
5435 7340 2.084546 GGAACGCATCAACCTTAAGCT 58.915 47.619 0.00 0.00 0.00 3.74
5436 7341 2.544480 GGAACGCATCAACCTTAAGC 57.456 50.000 0.00 0.00 0.00 3.09
5459 7364 2.069273 CGAGTTTCTAGCAACCACAGG 58.931 52.381 1.35 0.00 0.00 4.00
5479 7384 2.440247 CCAATGAACCGGCCCTCC 60.440 66.667 0.00 0.00 0.00 4.30
5480 7385 2.046285 CACCAATGAACCGGCCCTC 61.046 63.158 0.00 0.00 0.00 4.30
5482 7387 3.758931 GCACCAATGAACCGGCCC 61.759 66.667 0.00 0.00 0.00 5.80
5483 7388 2.212900 GAAGCACCAATGAACCGGCC 62.213 60.000 0.00 0.00 0.00 6.13
5484 7389 1.212751 GAAGCACCAATGAACCGGC 59.787 57.895 0.00 0.00 0.00 6.13
5503 7408 1.006102 CCCCTCGTACATGATCGCC 60.006 63.158 0.00 0.00 0.00 5.54
5515 7420 1.673337 GGAACCGGTTTTCCCCTCG 60.673 63.158 23.22 0.00 39.47 4.63
5555 7460 2.040544 GCTTAGCGCTTCCCTGCAA 61.041 57.895 18.68 0.00 35.14 4.08
5598 7503 4.644685 ACAGTATCTTGCAACCACAGTTTT 59.355 37.500 0.00 0.00 32.45 2.43
5602 7507 3.668447 AGACAGTATCTTGCAACCACAG 58.332 45.455 0.00 0.00 31.62 3.66
5624 7529 1.464997 GCCAGGAGACTTTTAACTGCG 59.535 52.381 0.00 0.00 40.21 5.18
5629 7534 3.908103 AGTACCTGCCAGGAGACTTTTAA 59.092 43.478 19.90 0.00 40.21 1.52
5631 7536 2.339769 AGTACCTGCCAGGAGACTTTT 58.660 47.619 19.90 0.00 40.21 2.27
5632 7537 2.031495 AGTACCTGCCAGGAGACTTT 57.969 50.000 19.90 0.00 40.21 2.66
5633 7538 2.031495 AAGTACCTGCCAGGAGACTT 57.969 50.000 19.90 21.33 40.21 3.01
5634 7539 2.031495 AAAGTACCTGCCAGGAGACT 57.969 50.000 19.90 16.73 46.44 3.24
5664 8229 2.026822 AGTACCTGCCAGGAGACAATTG 60.027 50.000 19.90 3.24 37.67 2.32
5702 8267 6.082031 AGGTTTGAGGGGCTAAATTTTAAGT 58.918 36.000 0.00 0.00 0.00 2.24
5705 8270 7.731235 AGTTAAGGTTTGAGGGGCTAAATTTTA 59.269 33.333 0.00 0.00 0.00 1.52
5746 8311 8.290325 AGAAGTTCGGCTAGAAATTGTTTTTAG 58.710 33.333 11.49 0.00 45.74 1.85
5748 8313 7.039313 AGAAGTTCGGCTAGAAATTGTTTTT 57.961 32.000 11.49 0.00 45.74 1.94
5763 8328 7.115947 CCAGTGTAGTAAGTTTTAGAAGTTCGG 59.884 40.741 0.00 0.00 31.14 4.30
5862 8427 5.282055 TGTAGCTGGAATGGAGTATGAAG 57.718 43.478 0.00 0.00 0.00 3.02
5865 8430 7.361542 GCAAATATGTAGCTGGAATGGAGTATG 60.362 40.741 0.00 0.00 0.00 2.39
5866 8431 6.656693 GCAAATATGTAGCTGGAATGGAGTAT 59.343 38.462 0.00 0.00 0.00 2.12
5868 8433 4.823989 GCAAATATGTAGCTGGAATGGAGT 59.176 41.667 0.00 0.00 0.00 3.85
5869 8434 4.823442 TGCAAATATGTAGCTGGAATGGAG 59.177 41.667 0.00 0.00 0.00 3.86
5870 8435 4.790937 TGCAAATATGTAGCTGGAATGGA 58.209 39.130 0.00 0.00 0.00 3.41
5913 8484 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
5914 8485 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
5915 8486 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
5916 8487 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
5917 8488 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
5918 8489 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
5919 8490 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
5920 8491 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
5921 8492 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
5922 8493 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
5923 8494 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
5929 8500 9.900710 CAGTGATCTAAACGCTCTTATATTAGT 57.099 33.333 0.00 0.00 0.00 2.24
5932 8503 8.634444 ACTCAGTGATCTAAACGCTCTTATATT 58.366 33.333 0.00 0.00 0.00 1.28
5933 8504 8.079203 CACTCAGTGATCTAAACGCTCTTATAT 58.921 37.037 0.00 0.00 35.23 0.86
5934 8505 7.282450 TCACTCAGTGATCTAAACGCTCTTATA 59.718 37.037 2.36 0.00 37.67 0.98
5935 8506 6.095580 TCACTCAGTGATCTAAACGCTCTTAT 59.904 38.462 2.36 0.00 37.67 1.73
5936 8507 5.414765 TCACTCAGTGATCTAAACGCTCTTA 59.585 40.000 2.36 0.00 37.67 2.10
5937 8508 4.218635 TCACTCAGTGATCTAAACGCTCTT 59.781 41.667 2.36 0.00 37.67 2.85
5938 8509 3.759086 TCACTCAGTGATCTAAACGCTCT 59.241 43.478 2.36 0.00 37.67 4.09
5939 8510 4.098055 TCACTCAGTGATCTAAACGCTC 57.902 45.455 2.36 0.00 37.67 5.03
5950 8521 3.759086 AGAGCGTTTAGATCACTCAGTGA 59.241 43.478 10.71 10.71 46.90 3.41
5951 8522 4.103365 AGAGCGTTTAGATCACTCAGTG 57.897 45.455 0.00 0.00 37.82 3.66
5952 8523 4.792521 AAGAGCGTTTAGATCACTCAGT 57.207 40.909 0.00 0.00 37.82 3.41
5989 8560 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
5990 8561 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
5991 8562 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
5992 8563 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
5993 8564 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
5994 8565 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
5995 8566 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
5996 8567 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
5997 8568 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5998 8569 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5999 8570 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
6002 8573 9.819754 ATTAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
6003 8574 9.646522 AATTAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 30.61 0.98
6004 8575 8.544687 AATTAGTACTCCCTCCGTAAACTAAT 57.455 34.615 0.00 0.00 31.64 1.73
6005 8576 7.961326 AATTAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
6006 8577 9.125026 CTTAATTAGTACTCCCTCCGTAAACTA 57.875 37.037 0.00 0.00 0.00 2.24
6007 8578 7.069208 CCTTAATTAGTACTCCCTCCGTAAACT 59.931 40.741 0.00 0.00 0.00 2.66
6008 8579 7.147828 ACCTTAATTAGTACTCCCTCCGTAAAC 60.148 40.741 0.00 0.00 0.00 2.01
6009 8580 6.897413 ACCTTAATTAGTACTCCCTCCGTAAA 59.103 38.462 0.00 0.00 0.00 2.01
6010 8581 6.435164 ACCTTAATTAGTACTCCCTCCGTAA 58.565 40.000 0.00 0.00 0.00 3.18
6011 8582 6.018433 ACCTTAATTAGTACTCCCTCCGTA 57.982 41.667 0.00 0.00 0.00 4.02
6012 8583 4.876580 ACCTTAATTAGTACTCCCTCCGT 58.123 43.478 0.00 0.00 0.00 4.69
6013 8584 5.361857 TGAACCTTAATTAGTACTCCCTCCG 59.638 44.000 0.00 0.00 0.00 4.63
6014 8585 6.155737 TGTGAACCTTAATTAGTACTCCCTCC 59.844 42.308 0.00 0.00 0.00 4.30
6015 8586 7.040494 GTGTGAACCTTAATTAGTACTCCCTC 58.960 42.308 0.00 0.00 0.00 4.30
6016 8587 6.499350 TGTGTGAACCTTAATTAGTACTCCCT 59.501 38.462 0.00 0.00 0.00 4.20
6017 8588 6.704310 TGTGTGAACCTTAATTAGTACTCCC 58.296 40.000 0.00 0.00 0.00 4.30
6018 8589 8.788325 ATTGTGTGAACCTTAATTAGTACTCC 57.212 34.615 0.00 0.00 0.00 3.85
6020 8591 9.787435 TGAATTGTGTGAACCTTAATTAGTACT 57.213 29.630 0.00 0.00 0.00 2.73
6176 12033 6.636454 AAGTTCATACCCAACTCCAAGATA 57.364 37.500 0.00 0.00 32.71 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.