Multiple sequence alignment - TraesCS1B01G275100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G275100 chr1B 100.000 3932 0 0 1 3932 482456084 482452153 0.000000e+00 7262
1 TraesCS1B01G275100 chr1B 96.232 345 12 1 215 558 619093202 619093546 7.380000e-157 564
2 TraesCS1B01G275100 chr1A 94.482 3389 133 23 559 3932 459951373 459948024 0.000000e+00 5173
3 TraesCS1B01G275100 chr1A 84.889 225 22 6 1 215 459951592 459951370 2.380000e-52 217
4 TraesCS1B01G275100 chr1A 88.889 144 14 2 9 152 385897505 385897646 4.040000e-40 176
5 TraesCS1B01G275100 chr1D 95.248 3241 111 8 559 3790 360391595 360388389 0.000000e+00 5092
6 TraesCS1B01G275100 chr1D 98.621 145 2 0 3788 3932 360388078 360387934 1.400000e-64 257
7 TraesCS1B01G275100 chr3B 95.924 368 10 4 209 572 678450161 678449795 3.380000e-165 592
8 TraesCS1B01G275100 chr3B 96.317 353 12 1 207 559 817575036 817574685 2.630000e-161 579
9 TraesCS1B01G275100 chr3A 97.135 349 9 1 211 559 468165865 468166212 4.380000e-164 588
10 TraesCS1B01G275100 chr3A 91.045 134 12 0 19 152 534181995 534181862 8.680000e-42 182
11 TraesCS1B01G275100 chr7A 96.848 349 11 0 212 560 704628523 704628871 5.660000e-163 584
12 TraesCS1B01G275100 chr7A 90.580 138 12 1 19 156 451519944 451519808 8.680000e-42 182
13 TraesCS1B01G275100 chr5B 95.751 353 14 1 211 563 197183808 197183457 5.700000e-158 568
14 TraesCS1B01G275100 chr5B 95.690 348 14 1 211 558 141898449 141898795 3.430000e-155 558
15 TraesCS1B01G275100 chr4A 95.714 350 13 2 211 559 663759957 663759609 2.650000e-156 562
16 TraesCS1B01G275100 chr4A 87.919 149 15 3 17 162 612082775 612082627 5.220000e-39 172
17 TraesCS1B01G275100 chr6A 94.944 356 17 1 207 561 496382061 496382416 1.230000e-154 556
18 TraesCS1B01G275100 chr4B 90.370 135 13 0 18 152 446519401 446519535 1.120000e-40 178
19 TraesCS1B01G275100 chr5A 89.781 137 14 0 19 155 558675630 558675494 4.040000e-40 176
20 TraesCS1B01G275100 chr7D 87.838 148 15 3 9 156 397554936 397555080 1.880000e-38 171
21 TraesCS1B01G275100 chr2B 87.162 148 19 0 19 166 521975008 521974861 6.760000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G275100 chr1B 482452153 482456084 3931 True 7262.0 7262 100.0000 1 3932 1 chr1B.!!$R1 3931
1 TraesCS1B01G275100 chr1A 459948024 459951592 3568 True 2695.0 5173 89.6855 1 3932 2 chr1A.!!$R1 3931
2 TraesCS1B01G275100 chr1D 360387934 360391595 3661 True 2674.5 5092 96.9345 559 3932 2 chr1D.!!$R1 3373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 445 0.033109 GGGATTGGAGGGTTTGGAGG 60.033 60.0 0.00 0.0 0.00 4.30 F
1895 1916 0.037017 CCCAACACCGGGTCAATACA 59.963 55.0 6.32 0.0 41.83 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 2237 0.176910 GCTGCTTCCTACTCTGTCCC 59.823 60.0 0.00 0.0 0.0 4.46 R
3615 3644 0.940126 GCATGCCTGTCTTCATACCG 59.060 55.0 6.36 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.946655 TTTATAGATTGCAATCTGGACTACG 57.053 36.000 39.83 0.00 45.01 3.51
45 46 3.525537 AGATTGCAATCTGGACTACGTG 58.474 45.455 35.32 0.00 43.81 4.49
48 49 1.421410 GCAATCTGGACTACGTGCGG 61.421 60.000 0.00 0.00 0.00 5.69
51 52 0.680280 ATCTGGACTACGTGCGGAGT 60.680 55.000 9.43 9.43 42.14 3.85
57 58 3.443329 TGGACTACGTGCGGAGTAAAATA 59.557 43.478 9.65 0.00 39.83 1.40
62 63 3.916761 ACGTGCGGAGTAAAATAAGTGA 58.083 40.909 0.00 0.00 0.00 3.41
69 70 7.277098 GTGCGGAGTAAAATAAGTGAATCTACA 59.723 37.037 0.00 0.00 0.00 2.74
116 119 8.612619 CATCCGTATGTAGGCCATATTAAAATC 58.387 37.037 5.01 0.00 38.29 2.17
198 208 8.770850 TTTGAAATAAAACTTCGTTTACCTCG 57.229 30.769 0.00 0.00 34.43 4.63
199 209 7.481275 TGAAATAAAACTTCGTTTACCTCGT 57.519 32.000 0.00 0.00 34.43 4.18
200 210 7.566709 TGAAATAAAACTTCGTTTACCTCGTC 58.433 34.615 0.00 0.00 34.43 4.20
202 212 6.701432 ATAAAACTTCGTTTACCTCGTCAG 57.299 37.500 0.00 0.00 34.43 3.51
205 215 4.311816 ACTTCGTTTACCTCGTCAGAAA 57.688 40.909 0.00 0.00 0.00 2.52
215 225 5.941948 ACCTCGTCAGAAAAAGTTTATGG 57.058 39.130 0.00 0.00 0.00 2.74
216 226 4.215613 ACCTCGTCAGAAAAAGTTTATGGC 59.784 41.667 0.00 0.00 0.00 4.40
217 227 4.379499 CCTCGTCAGAAAAAGTTTATGGCC 60.379 45.833 0.00 0.00 0.00 5.36
218 228 4.138290 TCGTCAGAAAAAGTTTATGGCCA 58.862 39.130 8.56 8.56 0.00 5.36
219 229 4.764823 TCGTCAGAAAAAGTTTATGGCCAT 59.235 37.500 24.45 24.45 0.00 4.40
220 230 4.858692 CGTCAGAAAAAGTTTATGGCCATG 59.141 41.667 29.04 8.42 0.00 3.66
221 231 5.564651 CGTCAGAAAAAGTTTATGGCCATGT 60.565 40.000 29.04 6.24 0.00 3.21
222 232 6.223120 GTCAGAAAAAGTTTATGGCCATGTT 58.777 36.000 29.04 12.96 0.00 2.71
223 233 6.705825 GTCAGAAAAAGTTTATGGCCATGTTT 59.294 34.615 29.04 17.78 0.00 2.83
224 234 6.705381 TCAGAAAAAGTTTATGGCCATGTTTG 59.295 34.615 29.04 10.70 0.00 2.93
225 235 5.997129 AGAAAAAGTTTATGGCCATGTTTGG 59.003 36.000 29.04 0.00 46.66 3.28
226 236 5.559148 AAAAGTTTATGGCCATGTTTGGA 57.441 34.783 29.04 3.61 46.92 3.53
227 237 5.760484 AAAGTTTATGGCCATGTTTGGAT 57.240 34.783 29.04 1.85 46.92 3.41
228 238 5.343307 AAGTTTATGGCCATGTTTGGATC 57.657 39.130 29.04 9.44 46.92 3.36
229 239 3.706086 AGTTTATGGCCATGTTTGGATCC 59.294 43.478 29.04 4.20 46.92 3.36
230 240 3.395054 TTATGGCCATGTTTGGATCCA 57.605 42.857 29.04 11.44 46.92 3.41
231 241 2.250921 ATGGCCATGTTTGGATCCAA 57.749 45.000 23.63 23.63 46.92 3.53
232 242 1.559368 TGGCCATGTTTGGATCCAAG 58.441 50.000 25.69 15.60 46.92 3.61
233 243 0.826062 GGCCATGTTTGGATCCAAGG 59.174 55.000 25.69 23.10 46.92 3.61
234 244 0.826062 GCCATGTTTGGATCCAAGGG 59.174 55.000 25.69 23.76 46.92 3.95
235 245 1.619432 GCCATGTTTGGATCCAAGGGA 60.619 52.381 25.69 14.61 46.92 4.20
236 246 2.102578 CCATGTTTGGATCCAAGGGAC 58.897 52.381 25.69 21.18 46.92 4.46
237 247 2.291800 CCATGTTTGGATCCAAGGGACT 60.292 50.000 25.69 9.79 46.92 3.85
238 248 3.053693 CCATGTTTGGATCCAAGGGACTA 60.054 47.826 25.69 8.70 46.92 2.59
239 249 4.386761 CCATGTTTGGATCCAAGGGACTAT 60.387 45.833 25.69 14.36 46.92 2.12
240 250 4.946160 TGTTTGGATCCAAGGGACTATT 57.054 40.909 25.69 0.00 38.49 1.73
241 251 5.269554 TGTTTGGATCCAAGGGACTATTT 57.730 39.130 25.69 0.00 38.49 1.40
242 252 5.650283 TGTTTGGATCCAAGGGACTATTTT 58.350 37.500 25.69 0.00 38.49 1.82
243 253 6.081356 TGTTTGGATCCAAGGGACTATTTTT 58.919 36.000 25.69 0.00 38.49 1.94
244 254 7.242359 TGTTTGGATCCAAGGGACTATTTTTA 58.758 34.615 25.69 4.97 38.49 1.52
245 255 7.396055 TGTTTGGATCCAAGGGACTATTTTTAG 59.604 37.037 25.69 0.00 38.49 1.85
246 256 6.652205 TGGATCCAAGGGACTATTTTTAGT 57.348 37.500 13.46 0.00 38.49 2.24
247 257 6.659824 TGGATCCAAGGGACTATTTTTAGTC 58.340 40.000 13.46 4.87 44.23 2.59
248 258 6.447084 TGGATCCAAGGGACTATTTTTAGTCT 59.553 38.462 13.46 0.00 44.35 3.24
249 259 6.768381 GGATCCAAGGGACTATTTTTAGTCTG 59.232 42.308 6.95 4.29 44.35 3.51
250 260 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
251 261 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
252 262 6.500751 TCCAAGGGACTATTTTTAGTCTGACT 59.499 38.462 15.57 15.57 44.35 3.41
253 263 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
254 264 8.319146 CCAAGGGACTATTTTTAGTCTGACTAA 58.681 37.037 22.80 22.80 44.35 2.24
255 265 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
269 279 8.466617 AGTCTGACTAAAACTAGTCTCTTTCA 57.533 34.615 8.91 0.00 44.99 2.69
270 280 8.573035 AGTCTGACTAAAACTAGTCTCTTTCAG 58.427 37.037 8.91 13.68 44.99 3.02
271 281 8.569641 GTCTGACTAAAACTAGTCTCTTTCAGA 58.430 37.037 16.62 16.62 44.99 3.27
272 282 8.788806 TCTGACTAAAACTAGTCTCTTTCAGAG 58.211 37.037 16.62 0.00 44.99 3.35
273 283 7.887381 TGACTAAAACTAGTCTCTTTCAGAGG 58.113 38.462 12.26 0.00 44.99 3.69
274 284 6.693466 ACTAAAACTAGTCTCTTTCAGAGGC 58.307 40.000 0.00 0.00 46.94 4.70
283 293 4.932799 GTCTCTTTCAGAGGCTAAAGTTCC 59.067 45.833 7.84 0.00 43.38 3.62
284 294 4.593206 TCTCTTTCAGAGGCTAAAGTTCCA 59.407 41.667 7.84 0.00 42.54 3.53
285 295 5.071788 TCTCTTTCAGAGGCTAAAGTTCCAA 59.928 40.000 7.84 0.00 42.54 3.53
286 296 5.880901 TCTTTCAGAGGCTAAAGTTCCAAT 58.119 37.500 7.84 0.00 34.88 3.16
287 297 5.940470 TCTTTCAGAGGCTAAAGTTCCAATC 59.060 40.000 7.84 0.00 34.88 2.67
288 298 4.908601 TCAGAGGCTAAAGTTCCAATCA 57.091 40.909 0.00 0.00 0.00 2.57
289 299 4.579869 TCAGAGGCTAAAGTTCCAATCAC 58.420 43.478 0.00 0.00 0.00 3.06
290 300 3.691609 CAGAGGCTAAAGTTCCAATCACC 59.308 47.826 0.00 0.00 0.00 4.02
291 301 3.017442 GAGGCTAAAGTTCCAATCACCC 58.983 50.000 0.00 0.00 0.00 4.61
292 302 2.100197 GGCTAAAGTTCCAATCACCCC 58.900 52.381 0.00 0.00 0.00 4.95
293 303 2.291605 GGCTAAAGTTCCAATCACCCCT 60.292 50.000 0.00 0.00 0.00 4.79
294 304 2.755103 GCTAAAGTTCCAATCACCCCTG 59.245 50.000 0.00 0.00 0.00 4.45
295 305 3.561313 GCTAAAGTTCCAATCACCCCTGA 60.561 47.826 0.00 0.00 0.00 3.86
296 306 2.586648 AAGTTCCAATCACCCCTGAC 57.413 50.000 0.00 0.00 0.00 3.51
297 307 1.747444 AGTTCCAATCACCCCTGACT 58.253 50.000 0.00 0.00 0.00 3.41
298 308 2.915869 AGTTCCAATCACCCCTGACTA 58.084 47.619 0.00 0.00 0.00 2.59
299 309 3.256704 AGTTCCAATCACCCCTGACTAA 58.743 45.455 0.00 0.00 0.00 2.24
300 310 3.655777 AGTTCCAATCACCCCTGACTAAA 59.344 43.478 0.00 0.00 0.00 1.85
301 311 4.010349 GTTCCAATCACCCCTGACTAAAG 58.990 47.826 0.00 0.00 0.00 1.85
302 312 3.526899 TCCAATCACCCCTGACTAAAGA 58.473 45.455 0.00 0.00 0.00 2.52
303 313 3.519510 TCCAATCACCCCTGACTAAAGAG 59.480 47.826 0.00 0.00 0.00 2.85
304 314 3.519510 CCAATCACCCCTGACTAAAGAGA 59.480 47.826 0.00 0.00 0.00 3.10
305 315 4.383552 CCAATCACCCCTGACTAAAGAGAG 60.384 50.000 0.00 0.00 0.00 3.20
306 316 3.827817 TCACCCCTGACTAAAGAGAGA 57.172 47.619 0.00 0.00 0.00 3.10
307 317 3.432378 TCACCCCTGACTAAAGAGAGAC 58.568 50.000 0.00 0.00 0.00 3.36
308 318 3.076182 TCACCCCTGACTAAAGAGAGACT 59.924 47.826 0.00 0.00 0.00 3.24
309 319 4.291513 TCACCCCTGACTAAAGAGAGACTA 59.708 45.833 0.00 0.00 0.00 2.59
310 320 4.642885 CACCCCTGACTAAAGAGAGACTAG 59.357 50.000 0.00 0.00 0.00 2.57
311 321 4.540906 ACCCCTGACTAAAGAGAGACTAGA 59.459 45.833 0.00 0.00 0.00 2.43
312 322 5.015391 ACCCCTGACTAAAGAGAGACTAGAA 59.985 44.000 0.00 0.00 0.00 2.10
313 323 5.358725 CCCCTGACTAAAGAGAGACTAGAAC 59.641 48.000 0.00 0.00 0.00 3.01
314 324 6.184789 CCCTGACTAAAGAGAGACTAGAACT 58.815 44.000 0.00 0.00 0.00 3.01
315 325 7.340256 CCCTGACTAAAGAGAGACTAGAACTA 58.660 42.308 0.00 0.00 0.00 2.24
316 326 7.497909 CCCTGACTAAAGAGAGACTAGAACTAG 59.502 44.444 0.00 7.24 39.04 2.57
368 378 7.803279 GGAACCCTACTAAAATGTGGATTAG 57.197 40.000 0.00 0.00 35.67 1.73
369 379 7.344134 GGAACCCTACTAAAATGTGGATTAGT 58.656 38.462 3.93 3.93 43.05 2.24
370 380 7.498239 GGAACCCTACTAAAATGTGGATTAGTC 59.502 40.741 1.78 0.00 40.53 2.59
371 381 6.896883 ACCCTACTAAAATGTGGATTAGTCC 58.103 40.000 0.00 0.00 40.53 3.85
372 382 6.677076 ACCCTACTAAAATGTGGATTAGTCCT 59.323 38.462 5.79 0.00 45.32 3.85
373 383 7.147532 ACCCTACTAAAATGTGGATTAGTCCTC 60.148 40.741 5.79 2.58 45.32 3.71
374 384 7.071321 CCCTACTAAAATGTGGATTAGTCCTCT 59.929 40.741 5.79 0.00 45.32 3.69
375 385 8.145122 CCTACTAAAATGTGGATTAGTCCTCTC 58.855 40.741 5.79 0.00 45.32 3.20
376 386 7.741554 ACTAAAATGTGGATTAGTCCTCTCT 57.258 36.000 5.79 0.00 45.32 3.10
377 387 7.787028 ACTAAAATGTGGATTAGTCCTCTCTC 58.213 38.462 5.79 0.00 45.32 3.20
378 388 6.882768 AAAATGTGGATTAGTCCTCTCTCT 57.117 37.500 5.79 0.00 45.32 3.10
379 389 6.478512 AAATGTGGATTAGTCCTCTCTCTC 57.521 41.667 5.79 0.00 45.32 3.20
380 390 3.904717 TGTGGATTAGTCCTCTCTCTCC 58.095 50.000 5.79 0.00 45.32 3.71
381 391 3.529734 TGTGGATTAGTCCTCTCTCTCCT 59.470 47.826 5.79 0.00 45.32 3.69
382 392 4.142038 GTGGATTAGTCCTCTCTCTCCTC 58.858 52.174 5.79 0.00 45.32 3.71
383 393 3.788708 TGGATTAGTCCTCTCTCTCCTCA 59.211 47.826 5.79 0.00 45.32 3.86
384 394 4.418526 TGGATTAGTCCTCTCTCTCCTCAT 59.581 45.833 5.79 0.00 45.32 2.90
385 395 5.103301 TGGATTAGTCCTCTCTCTCCTCATT 60.103 44.000 5.79 0.00 45.32 2.57
386 396 5.838521 GGATTAGTCCTCTCTCTCCTCATTT 59.161 44.000 0.00 0.00 41.60 2.32
387 397 7.007723 GGATTAGTCCTCTCTCTCCTCATTTA 58.992 42.308 0.00 0.00 41.60 1.40
388 398 7.507616 GGATTAGTCCTCTCTCTCCTCATTTAA 59.492 40.741 0.00 0.00 41.60 1.52
389 399 7.648039 TTAGTCCTCTCTCTCCTCATTTAAC 57.352 40.000 0.00 0.00 0.00 2.01
390 400 5.837829 AGTCCTCTCTCTCCTCATTTAACT 58.162 41.667 0.00 0.00 0.00 2.24
391 401 5.891551 AGTCCTCTCTCTCCTCATTTAACTC 59.108 44.000 0.00 0.00 0.00 3.01
392 402 5.068591 GTCCTCTCTCTCCTCATTTAACTCC 59.931 48.000 0.00 0.00 0.00 3.85
393 403 5.043732 TCCTCTCTCTCCTCATTTAACTCCT 60.044 44.000 0.00 0.00 0.00 3.69
394 404 5.301805 CCTCTCTCTCCTCATTTAACTCCTC 59.698 48.000 0.00 0.00 0.00 3.71
395 405 6.086011 TCTCTCTCCTCATTTAACTCCTCT 57.914 41.667 0.00 0.00 0.00 3.69
396 406 6.498538 TCTCTCTCCTCATTTAACTCCTCTT 58.501 40.000 0.00 0.00 0.00 2.85
397 407 6.605594 TCTCTCTCCTCATTTAACTCCTCTTC 59.394 42.308 0.00 0.00 0.00 2.87
398 408 6.498538 TCTCTCCTCATTTAACTCCTCTTCT 58.501 40.000 0.00 0.00 0.00 2.85
399 409 6.957020 TCTCTCCTCATTTAACTCCTCTTCTT 59.043 38.462 0.00 0.00 0.00 2.52
400 410 7.456269 TCTCTCCTCATTTAACTCCTCTTCTTT 59.544 37.037 0.00 0.00 0.00 2.52
401 411 8.666129 TCTCCTCATTTAACTCCTCTTCTTTA 57.334 34.615 0.00 0.00 0.00 1.85
402 412 9.101325 TCTCCTCATTTAACTCCTCTTCTTTAA 57.899 33.333 0.00 0.00 0.00 1.52
403 413 9.157104 CTCCTCATTTAACTCCTCTTCTTTAAC 57.843 37.037 0.00 0.00 0.00 2.01
404 414 8.656806 TCCTCATTTAACTCCTCTTCTTTAACA 58.343 33.333 0.00 0.00 0.00 2.41
405 415 8.722394 CCTCATTTAACTCCTCTTCTTTAACAC 58.278 37.037 0.00 0.00 0.00 3.32
406 416 9.273016 CTCATTTAACTCCTCTTCTTTAACACA 57.727 33.333 0.00 0.00 0.00 3.72
407 417 9.793259 TCATTTAACTCCTCTTCTTTAACACAT 57.207 29.630 0.00 0.00 0.00 3.21
408 418 9.831737 CATTTAACTCCTCTTCTTTAACACATG 57.168 33.333 0.00 0.00 0.00 3.21
409 419 5.948992 AACTCCTCTTCTTTAACACATGC 57.051 39.130 0.00 0.00 0.00 4.06
410 420 3.997021 ACTCCTCTTCTTTAACACATGCG 59.003 43.478 0.00 0.00 0.00 4.73
411 421 4.245660 CTCCTCTTCTTTAACACATGCGA 58.754 43.478 0.00 0.00 0.00 5.10
412 422 4.245660 TCCTCTTCTTTAACACATGCGAG 58.754 43.478 0.00 0.00 0.00 5.03
413 423 3.997021 CCTCTTCTTTAACACATGCGAGT 59.003 43.478 0.00 0.00 0.00 4.18
414 424 4.452455 CCTCTTCTTTAACACATGCGAGTT 59.548 41.667 0.00 0.00 0.00 3.01
415 425 5.389935 CCTCTTCTTTAACACATGCGAGTTC 60.390 44.000 0.00 0.00 0.00 3.01
416 426 4.149922 TCTTCTTTAACACATGCGAGTTCG 59.850 41.667 0.00 0.00 43.27 3.95
417 427 2.734606 TCTTTAACACATGCGAGTTCGG 59.265 45.455 3.50 0.00 40.23 4.30
418 428 1.434555 TTAACACATGCGAGTTCGGG 58.565 50.000 3.50 0.00 40.23 5.14
419 429 0.604073 TAACACATGCGAGTTCGGGA 59.396 50.000 3.50 0.00 40.23 5.14
420 430 0.036388 AACACATGCGAGTTCGGGAT 60.036 50.000 3.50 0.00 40.23 3.85
421 431 0.036388 ACACATGCGAGTTCGGGATT 60.036 50.000 3.50 0.00 40.23 3.01
422 432 0.374758 CACATGCGAGTTCGGGATTG 59.625 55.000 3.50 0.00 40.23 2.67
423 433 0.744414 ACATGCGAGTTCGGGATTGG 60.744 55.000 3.50 0.00 40.23 3.16
424 434 0.461870 CATGCGAGTTCGGGATTGGA 60.462 55.000 3.50 0.00 40.23 3.53
425 435 0.179073 ATGCGAGTTCGGGATTGGAG 60.179 55.000 3.50 0.00 40.23 3.86
426 436 1.521681 GCGAGTTCGGGATTGGAGG 60.522 63.158 3.50 0.00 40.23 4.30
427 437 1.144057 CGAGTTCGGGATTGGAGGG 59.856 63.158 0.00 0.00 35.37 4.30
428 438 1.614241 CGAGTTCGGGATTGGAGGGT 61.614 60.000 0.00 0.00 35.37 4.34
429 439 0.618981 GAGTTCGGGATTGGAGGGTT 59.381 55.000 0.00 0.00 0.00 4.11
430 440 1.004394 GAGTTCGGGATTGGAGGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
431 441 1.173913 GTTCGGGATTGGAGGGTTTG 58.826 55.000 0.00 0.00 0.00 2.93
432 442 0.039035 TTCGGGATTGGAGGGTTTGG 59.961 55.000 0.00 0.00 0.00 3.28
433 443 0.842905 TCGGGATTGGAGGGTTTGGA 60.843 55.000 0.00 0.00 0.00 3.53
434 444 0.394352 CGGGATTGGAGGGTTTGGAG 60.394 60.000 0.00 0.00 0.00 3.86
435 445 0.033109 GGGATTGGAGGGTTTGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
436 446 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
437 447 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
438 448 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
439 449 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
440 450 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
441 451 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
442 452 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
443 453 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
444 454 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
445 455 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
446 456 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
447 457 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
448 458 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
449 459 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
450 460 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
451 461 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
452 462 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
455 465 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
456 466 9.507329 TGGAGGATAATAAATGCTCATTAACTC 57.493 33.333 8.48 0.00 38.10 3.01
457 467 9.507329 GGAGGATAATAAATGCTCATTAACTCA 57.493 33.333 8.48 0.00 38.10 3.41
499 509 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
500 510 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
501 511 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
502 512 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
503 513 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
504 514 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
505 515 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
506 516 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
507 517 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
508 518 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
509 519 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
510 520 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
511 521 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
512 522 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
513 523 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
514 524 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
515 525 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
516 526 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
517 527 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
518 528 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
519 529 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
520 530 5.429130 GCTAGCAAGTTTTAGTCCCACTAT 58.571 41.667 10.63 0.00 29.64 2.12
521 531 5.880887 GCTAGCAAGTTTTAGTCCCACTATT 59.119 40.000 10.63 0.00 29.64 1.73
522 532 6.374613 GCTAGCAAGTTTTAGTCCCACTATTT 59.625 38.462 10.63 0.00 29.64 1.40
523 533 7.094334 GCTAGCAAGTTTTAGTCCCACTATTTT 60.094 37.037 10.63 0.00 29.64 1.82
524 534 7.597288 AGCAAGTTTTAGTCCCACTATTTTT 57.403 32.000 0.00 0.00 29.64 1.94
525 535 8.700439 AGCAAGTTTTAGTCCCACTATTTTTA 57.300 30.769 0.00 0.00 29.64 1.52
526 536 8.793592 AGCAAGTTTTAGTCCCACTATTTTTAG 58.206 33.333 0.00 0.00 29.64 1.85
527 537 8.573885 GCAAGTTTTAGTCCCACTATTTTTAGT 58.426 33.333 0.00 0.00 29.64 2.24
529 539 9.856162 AAGTTTTAGTCCCACTATTTTTAGTCA 57.144 29.630 0.00 0.00 29.64 3.41
532 542 8.801882 TTTAGTCCCACTATTTTTAGTCATGG 57.198 34.615 0.00 0.00 29.64 3.66
533 543 5.755849 AGTCCCACTATTTTTAGTCATGGG 58.244 41.667 0.00 0.00 34.08 4.00
534 544 5.491078 AGTCCCACTATTTTTAGTCATGGGA 59.509 40.000 4.97 4.97 37.44 4.37
535 545 5.589050 GTCCCACTATTTTTAGTCATGGGAC 59.411 44.000 20.52 20.52 45.42 4.46
548 558 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
549 559 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
550 560 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
551 561 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
552 562 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
553 563 4.196971 GGGACTAAAACGTATCCAAGCAT 58.803 43.478 0.00 0.00 32.45 3.79
554 564 4.272748 GGGACTAAAACGTATCCAAGCATC 59.727 45.833 0.00 0.00 32.45 3.91
555 565 4.272748 GGACTAAAACGTATCCAAGCATCC 59.727 45.833 0.00 0.00 0.00 3.51
556 566 5.099042 ACTAAAACGTATCCAAGCATCCT 57.901 39.130 0.00 0.00 0.00 3.24
557 567 5.116882 ACTAAAACGTATCCAAGCATCCTC 58.883 41.667 0.00 0.00 0.00 3.71
623 634 7.678218 GCAGAAGCATTAAACTCACTAATCCAG 60.678 40.741 0.00 0.00 41.58 3.86
627 638 8.079211 AGCATTAAACTCACTAATCCAGAGTA 57.921 34.615 0.00 0.00 41.45 2.59
651 662 1.063327 CACGTCAAACAAAGCGGCA 59.937 52.632 1.45 0.00 0.00 5.69
677 688 3.570212 GCCACCACCACCACCTCT 61.570 66.667 0.00 0.00 0.00 3.69
679 690 1.228245 CCACCACCACCACCTCTTG 60.228 63.158 0.00 0.00 0.00 3.02
860 881 6.464222 CACATTTTACTCCAACCACTCTCTA 58.536 40.000 0.00 0.00 0.00 2.43
861 882 6.591834 CACATTTTACTCCAACCACTCTCTAG 59.408 42.308 0.00 0.00 0.00 2.43
862 883 4.803098 TTTACTCCAACCACTCTCTAGC 57.197 45.455 0.00 0.00 0.00 3.42
863 884 2.310779 ACTCCAACCACTCTCTAGCA 57.689 50.000 0.00 0.00 0.00 3.49
864 885 2.826488 ACTCCAACCACTCTCTAGCAT 58.174 47.619 0.00 0.00 0.00 3.79
865 886 3.177228 ACTCCAACCACTCTCTAGCATT 58.823 45.455 0.00 0.00 0.00 3.56
866 887 3.055530 ACTCCAACCACTCTCTAGCATTG 60.056 47.826 0.00 0.00 0.00 2.82
867 888 2.012673 CCAACCACTCTCTAGCATTGC 58.987 52.381 0.00 0.00 0.00 3.56
868 889 2.355513 CCAACCACTCTCTAGCATTGCT 60.356 50.000 16.63 16.63 43.41 3.91
869 890 2.935201 CAACCACTCTCTAGCATTGCTC 59.065 50.000 15.81 0.00 40.44 4.26
870 891 1.484240 ACCACTCTCTAGCATTGCTCC 59.516 52.381 15.81 0.00 40.44 4.70
871 892 1.761784 CCACTCTCTAGCATTGCTCCT 59.238 52.381 15.81 0.00 40.44 3.69
872 893 2.224018 CCACTCTCTAGCATTGCTCCTC 60.224 54.545 15.81 0.00 40.44 3.71
873 894 2.038659 ACTCTCTAGCATTGCTCCTCC 58.961 52.381 15.81 0.00 40.44 4.30
874 895 1.344114 CTCTCTAGCATTGCTCCTCCC 59.656 57.143 15.81 0.00 40.44 4.30
875 896 0.396060 CTCTAGCATTGCTCCTCCCC 59.604 60.000 15.81 0.00 40.44 4.81
876 897 1.070445 CTAGCATTGCTCCTCCCCG 59.930 63.158 15.81 0.00 40.44 5.73
902 923 3.123804 CCGCTATCTGCACGAGTATTTT 58.876 45.455 0.00 0.00 43.06 1.82
935 956 1.186917 TCCTCCCAACGTAAGCCGAA 61.187 55.000 0.00 0.00 45.62 4.30
936 957 0.739813 CCTCCCAACGTAAGCCGAAG 60.740 60.000 0.00 0.00 45.62 3.79
948 969 4.016706 CCGAAGCCGACCCCTGTT 62.017 66.667 0.00 0.00 38.22 3.16
951 972 2.852075 AAGCCGACCCCTGTTCCA 60.852 61.111 0.00 0.00 0.00 3.53
952 973 3.192103 AAGCCGACCCCTGTTCCAC 62.192 63.158 0.00 0.00 0.00 4.02
955 976 1.003718 CCGACCCCTGTTCCACTTC 60.004 63.158 0.00 0.00 0.00 3.01
956 977 1.003718 CGACCCCTGTTCCACTTCC 60.004 63.158 0.00 0.00 0.00 3.46
957 978 1.764571 CGACCCCTGTTCCACTTCCA 61.765 60.000 0.00 0.00 0.00 3.53
958 979 0.250770 GACCCCTGTTCCACTTCCAC 60.251 60.000 0.00 0.00 0.00 4.02
959 980 1.074951 CCCCTGTTCCACTTCCACC 59.925 63.158 0.00 0.00 0.00 4.61
960 981 1.715019 CCCCTGTTCCACTTCCACCA 61.715 60.000 0.00 0.00 0.00 4.17
961 982 0.537371 CCCTGTTCCACTTCCACCAC 60.537 60.000 0.00 0.00 0.00 4.16
962 983 0.537371 CCTGTTCCACTTCCACCACC 60.537 60.000 0.00 0.00 0.00 4.61
963 984 0.537371 CTGTTCCACTTCCACCACCC 60.537 60.000 0.00 0.00 0.00 4.61
964 985 1.599797 GTTCCACTTCCACCACCCG 60.600 63.158 0.00 0.00 0.00 5.28
965 986 3.485346 TTCCACTTCCACCACCCGC 62.485 63.158 0.00 0.00 0.00 6.13
1006 1027 4.751093 TGCTCGCCGAAATGCCGA 62.751 61.111 0.00 0.00 0.00 5.54
1035 1056 3.854669 CTCCGCATCCTCCCGCTT 61.855 66.667 0.00 0.00 0.00 4.68
1788 1809 3.006430 TGTCAGTCCTCGCATTCTTTGTA 59.994 43.478 0.00 0.00 0.00 2.41
1815 1836 1.166531 AGACAAGGCACGCCAAGAAC 61.167 55.000 11.35 2.97 38.92 3.01
1833 1854 2.240493 ACAAGAAGAGGAACCACACG 57.760 50.000 0.00 0.00 0.00 4.49
1895 1916 0.037017 CCCAACACCGGGTCAATACA 59.963 55.000 6.32 0.00 41.83 2.29
1905 1926 3.259064 CGGGTCAATACAGTTCGACATT 58.741 45.455 0.00 0.00 0.00 2.71
1941 1962 1.445582 GACGGACAACTTCGCGGAT 60.446 57.895 6.13 0.00 0.00 4.18
1983 2004 0.600057 GGTTCGGAGTTGTCTACCGT 59.400 55.000 0.00 0.00 45.71 4.83
2181 2202 3.255149 AGATGTTCCTCGTGTACGACTTT 59.745 43.478 2.55 0.00 44.22 2.66
2216 2237 1.535015 GCTCGAGGAGTTCATCTTCCG 60.535 57.143 15.58 0.00 30.30 4.30
2268 2289 3.308878 GACATGGGCACAACGTCGC 62.309 63.158 6.17 0.00 0.00 5.19
2295 2316 6.610830 ACATAATAATGGATGTGGCAAAAGGA 59.389 34.615 0.00 0.00 37.43 3.36
2514 2535 4.963318 TGGACAATTGACAGAGAAGAGT 57.037 40.909 13.59 0.00 0.00 3.24
2790 2811 0.250234 CGGTGAAGATGCTTGAGGGA 59.750 55.000 0.00 0.00 0.00 4.20
2898 2919 2.044806 CTTCCCCGGCTATCAGTGGG 62.045 65.000 0.00 0.00 41.56 4.61
2991 3013 5.692204 CAGAGTTGTGTGTCGATACTTCTTT 59.308 40.000 13.73 0.00 0.00 2.52
3056 3078 4.619973 TGGCATTCATGTCAAACTTTGTC 58.380 39.130 1.44 0.00 39.82 3.18
3132 3158 4.980434 GCAGCAATTATACAAGCATCTTGG 59.020 41.667 10.80 0.00 0.00 3.61
3251 3279 5.535753 AGGTTTCACAAGGAAATTGAAGG 57.464 39.130 0.00 0.00 46.55 3.46
3311 3339 4.778143 GGCCGTGGCAGGATTCGT 62.778 66.667 13.76 0.00 44.11 3.85
3425 3453 1.422531 GAGCTCCATCTCCCTCATGT 58.577 55.000 0.87 0.00 0.00 3.21
3426 3454 1.767681 GAGCTCCATCTCCCTCATGTT 59.232 52.381 0.87 0.00 0.00 2.71
3568 3597 8.668510 ACCTATGCAGTGAATTCTGTTATTAG 57.331 34.615 7.05 2.32 37.70 1.73
3615 3644 3.437049 GGTAGAGGTGATTCAGTTTGCAC 59.563 47.826 0.00 0.00 0.00 4.57
3674 3704 2.840651 AGCAAGGAACTATGTAGTGGCT 59.159 45.455 0.00 0.00 38.49 4.75
3730 3760 4.272018 CAGCCACATTAAGTACTGATCAGC 59.728 45.833 22.83 7.43 36.29 4.26
3772 3802 7.326063 GCAACATTGTACTAAAACCAAGATCAC 59.674 37.037 0.00 0.00 0.00 3.06
3807 4150 8.168725 AGGATATGATTATGCTCCATTTCACTT 58.831 33.333 4.44 0.00 31.44 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.491152 CGTAGTCCAGATTGCAATCTATAAAAG 58.509 37.037 35.25 23.37 43.65 2.27
19 20 7.438160 CACGTAGTCCAGATTGCAATCTATAAA 59.562 37.037 35.25 20.42 41.17 1.40
21 22 6.447162 CACGTAGTCCAGATTGCAATCTATA 58.553 40.000 35.25 24.75 41.17 1.31
22 23 5.292765 CACGTAGTCCAGATTGCAATCTAT 58.707 41.667 35.25 24.18 41.17 1.98
23 24 4.682787 CACGTAGTCCAGATTGCAATCTA 58.317 43.478 35.25 21.94 41.17 1.98
30 31 0.172578 TCCGCACGTAGTCCAGATTG 59.827 55.000 0.00 0.00 41.61 2.67
34 35 0.806868 TTACTCCGCACGTAGTCCAG 59.193 55.000 0.00 0.00 41.61 3.86
37 38 5.004156 CACTTATTTTACTCCGCACGTAGTC 59.996 44.000 0.00 0.00 41.61 2.59
43 44 6.663944 AGATTCACTTATTTTACTCCGCAC 57.336 37.500 0.00 0.00 0.00 5.34
45 46 7.491696 AGTGTAGATTCACTTATTTTACTCCGC 59.508 37.037 0.00 0.00 44.92 5.54
57 58 8.108551 ACGTAGTTTAGAGTGTAGATTCACTT 57.891 34.615 0.00 0.00 43.61 3.16
189 199 7.801783 CCATAAACTTTTTCTGACGAGGTAAAC 59.198 37.037 0.00 0.00 0.00 2.01
196 206 4.138290 TGGCCATAAACTTTTTCTGACGA 58.862 39.130 0.00 0.00 0.00 4.20
197 207 4.497473 TGGCCATAAACTTTTTCTGACG 57.503 40.909 0.00 0.00 0.00 4.35
198 208 5.783111 ACATGGCCATAAACTTTTTCTGAC 58.217 37.500 20.30 0.00 0.00 3.51
199 209 6.418057 AACATGGCCATAAACTTTTTCTGA 57.582 33.333 20.30 0.00 0.00 3.27
200 210 6.073112 CCAAACATGGCCATAAACTTTTTCTG 60.073 38.462 20.30 5.36 0.00 3.02
202 212 5.994668 TCCAAACATGGCCATAAACTTTTTC 59.005 36.000 20.30 0.00 0.00 2.29
205 215 5.338300 GGATCCAAACATGGCCATAAACTTT 60.338 40.000 20.30 10.61 0.00 2.66
215 225 0.826062 CCCTTGGATCCAAACATGGC 59.174 55.000 26.87 0.00 35.33 4.40
216 226 2.102578 GTCCCTTGGATCCAAACATGG 58.897 52.381 26.87 22.64 35.33 3.66
217 227 3.091633 AGTCCCTTGGATCCAAACATG 57.908 47.619 26.87 15.43 35.33 3.21
218 228 5.472301 AATAGTCCCTTGGATCCAAACAT 57.528 39.130 26.87 14.85 35.33 2.71
219 229 4.946160 AATAGTCCCTTGGATCCAAACA 57.054 40.909 26.87 11.56 35.33 2.83
220 230 6.605471 AAAAATAGTCCCTTGGATCCAAAC 57.395 37.500 26.87 21.44 35.33 2.93
221 231 7.475299 ACTAAAAATAGTCCCTTGGATCCAAA 58.525 34.615 26.87 12.39 35.33 3.28
222 232 7.036863 AGACTAAAAATAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.66 3.53
223 233 6.447084 AGACTAAAAATAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.66 3.41
224 234 6.768381 CAGACTAAAAATAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.66 3.36
225 235 7.496263 GTCAGACTAAAAATAGTCCCTTGGATC 59.504 40.741 11.35 0.00 45.66 3.36
226 236 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
227 237 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
228 238 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
229 239 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
263 273 4.974645 TGGAACTTTAGCCTCTGAAAGA 57.025 40.909 1.60 0.00 43.69 2.52
264 274 5.707298 TGATTGGAACTTTAGCCTCTGAAAG 59.293 40.000 0.00 0.00 38.40 2.62
265 275 5.473504 GTGATTGGAACTTTAGCCTCTGAAA 59.526 40.000 0.00 0.00 0.00 2.69
266 276 5.003804 GTGATTGGAACTTTAGCCTCTGAA 58.996 41.667 0.00 0.00 0.00 3.02
267 277 4.565652 GGTGATTGGAACTTTAGCCTCTGA 60.566 45.833 0.00 0.00 0.00 3.27
268 278 3.691609 GGTGATTGGAACTTTAGCCTCTG 59.308 47.826 0.00 0.00 0.00 3.35
269 279 3.308473 GGGTGATTGGAACTTTAGCCTCT 60.308 47.826 0.00 0.00 0.00 3.69
270 280 3.017442 GGGTGATTGGAACTTTAGCCTC 58.983 50.000 0.00 0.00 0.00 4.70
271 281 2.291605 GGGGTGATTGGAACTTTAGCCT 60.292 50.000 0.00 0.00 0.00 4.58
272 282 2.100197 GGGGTGATTGGAACTTTAGCC 58.900 52.381 0.00 0.00 0.00 3.93
273 283 2.755103 CAGGGGTGATTGGAACTTTAGC 59.245 50.000 0.00 0.00 0.00 3.09
274 284 4.010349 GTCAGGGGTGATTGGAACTTTAG 58.990 47.826 0.00 0.00 0.00 1.85
275 285 3.655777 AGTCAGGGGTGATTGGAACTTTA 59.344 43.478 0.00 0.00 0.00 1.85
276 286 2.447047 AGTCAGGGGTGATTGGAACTTT 59.553 45.455 0.00 0.00 0.00 2.66
277 287 2.065799 AGTCAGGGGTGATTGGAACTT 58.934 47.619 0.00 0.00 0.00 2.66
278 288 1.747444 AGTCAGGGGTGATTGGAACT 58.253 50.000 0.00 0.00 0.00 3.01
279 289 3.713826 TTAGTCAGGGGTGATTGGAAC 57.286 47.619 0.00 0.00 0.00 3.62
280 290 3.913799 TCTTTAGTCAGGGGTGATTGGAA 59.086 43.478 0.00 0.00 0.00 3.53
281 291 3.519510 CTCTTTAGTCAGGGGTGATTGGA 59.480 47.826 0.00 0.00 0.00 3.53
282 292 3.519510 TCTCTTTAGTCAGGGGTGATTGG 59.480 47.826 0.00 0.00 0.00 3.16
283 293 4.467795 TCTCTCTTTAGTCAGGGGTGATTG 59.532 45.833 0.00 0.00 0.00 2.67
284 294 4.468153 GTCTCTCTTTAGTCAGGGGTGATT 59.532 45.833 0.00 0.00 0.00 2.57
285 295 4.027437 GTCTCTCTTTAGTCAGGGGTGAT 58.973 47.826 0.00 0.00 0.00 3.06
286 296 3.076182 AGTCTCTCTTTAGTCAGGGGTGA 59.924 47.826 0.00 0.00 0.00 4.02
287 297 3.436243 AGTCTCTCTTTAGTCAGGGGTG 58.564 50.000 0.00 0.00 0.00 4.61
288 298 3.837399 AGTCTCTCTTTAGTCAGGGGT 57.163 47.619 0.00 0.00 0.00 4.95
289 299 5.118729 TCTAGTCTCTCTTTAGTCAGGGG 57.881 47.826 0.00 0.00 0.00 4.79
290 300 6.184789 AGTTCTAGTCTCTCTTTAGTCAGGG 58.815 44.000 0.00 0.00 0.00 4.45
291 301 8.044908 ACTAGTTCTAGTCTCTCTTTAGTCAGG 58.955 40.741 6.67 0.00 0.00 3.86
292 302 9.095065 GACTAGTTCTAGTCTCTCTTTAGTCAG 57.905 40.741 24.28 0.00 42.29 3.51
329 339 7.302948 AGTAGGGTTCCCTTGACTAAATTTTT 58.697 34.615 16.05 0.00 37.64 1.94
330 340 6.860034 AGTAGGGTTCCCTTGACTAAATTTT 58.140 36.000 16.05 0.00 37.64 1.82
331 341 6.464530 AGTAGGGTTCCCTTGACTAAATTT 57.535 37.500 16.05 0.00 37.64 1.82
332 342 7.578458 TTAGTAGGGTTCCCTTGACTAAATT 57.422 36.000 21.55 3.82 35.77 1.82
333 343 7.578458 TTTAGTAGGGTTCCCTTGACTAAAT 57.422 36.000 26.19 10.07 39.64 1.40
334 344 7.391388 TTTTAGTAGGGTTCCCTTGACTAAA 57.609 36.000 26.19 26.19 41.09 1.85
335 345 7.017850 ACATTTTAGTAGGGTTCCCTTGACTAA 59.982 37.037 20.63 20.63 36.37 2.24
336 346 6.502863 ACATTTTAGTAGGGTTCCCTTGACTA 59.497 38.462 16.05 14.56 37.64 2.59
337 347 5.312443 ACATTTTAGTAGGGTTCCCTTGACT 59.688 40.000 16.05 15.52 37.64 3.41
338 348 5.414765 CACATTTTAGTAGGGTTCCCTTGAC 59.585 44.000 16.05 9.02 37.64 3.18
339 349 5.515886 CCACATTTTAGTAGGGTTCCCTTGA 60.516 44.000 16.05 0.00 37.64 3.02
340 350 4.705023 CCACATTTTAGTAGGGTTCCCTTG 59.295 45.833 16.05 8.59 37.64 3.61
341 351 4.604490 TCCACATTTTAGTAGGGTTCCCTT 59.396 41.667 16.05 1.48 37.64 3.95
342 352 4.180723 TCCACATTTTAGTAGGGTTCCCT 58.819 43.478 15.19 15.19 40.06 4.20
343 353 4.579647 TCCACATTTTAGTAGGGTTCCC 57.420 45.455 0.00 0.00 0.00 3.97
344 354 7.344134 ACTAATCCACATTTTAGTAGGGTTCC 58.656 38.462 0.00 0.00 36.99 3.62
345 355 7.498239 GGACTAATCCACATTTTAGTAGGGTTC 59.502 40.741 0.00 0.00 45.47 3.62
346 356 7.344134 GGACTAATCCACATTTTAGTAGGGTT 58.656 38.462 0.00 0.00 45.47 4.11
347 357 6.896883 GGACTAATCCACATTTTAGTAGGGT 58.103 40.000 0.00 0.00 45.47 4.34
362 372 4.447138 TGAGGAGAGAGAGGACTAATCC 57.553 50.000 0.00 0.00 46.69 3.01
363 373 6.976934 AAATGAGGAGAGAGAGGACTAATC 57.023 41.667 0.00 0.00 0.00 1.75
364 374 8.065007 AGTTAAATGAGGAGAGAGAGGACTAAT 58.935 37.037 0.00 0.00 0.00 1.73
365 375 7.415086 AGTTAAATGAGGAGAGAGAGGACTAA 58.585 38.462 0.00 0.00 0.00 2.24
366 376 6.975949 AGTTAAATGAGGAGAGAGAGGACTA 58.024 40.000 0.00 0.00 0.00 2.59
367 377 5.837829 AGTTAAATGAGGAGAGAGAGGACT 58.162 41.667 0.00 0.00 0.00 3.85
368 378 5.068591 GGAGTTAAATGAGGAGAGAGAGGAC 59.931 48.000 0.00 0.00 0.00 3.85
369 379 5.043732 AGGAGTTAAATGAGGAGAGAGAGGA 60.044 44.000 0.00 0.00 0.00 3.71
370 380 5.208121 AGGAGTTAAATGAGGAGAGAGAGG 58.792 45.833 0.00 0.00 0.00 3.69
371 381 6.129179 AGAGGAGTTAAATGAGGAGAGAGAG 58.871 44.000 0.00 0.00 0.00 3.20
372 382 6.086011 AGAGGAGTTAAATGAGGAGAGAGA 57.914 41.667 0.00 0.00 0.00 3.10
373 383 6.607198 AGAAGAGGAGTTAAATGAGGAGAGAG 59.393 42.308 0.00 0.00 0.00 3.20
374 384 6.498538 AGAAGAGGAGTTAAATGAGGAGAGA 58.501 40.000 0.00 0.00 0.00 3.10
375 385 6.790232 AGAAGAGGAGTTAAATGAGGAGAG 57.210 41.667 0.00 0.00 0.00 3.20
376 386 7.560796 AAAGAAGAGGAGTTAAATGAGGAGA 57.439 36.000 0.00 0.00 0.00 3.71
377 387 9.157104 GTTAAAGAAGAGGAGTTAAATGAGGAG 57.843 37.037 0.00 0.00 0.00 3.69
378 388 8.656806 TGTTAAAGAAGAGGAGTTAAATGAGGA 58.343 33.333 0.00 0.00 0.00 3.71
379 389 8.722394 GTGTTAAAGAAGAGGAGTTAAATGAGG 58.278 37.037 0.00 0.00 0.00 3.86
380 390 9.273016 TGTGTTAAAGAAGAGGAGTTAAATGAG 57.727 33.333 0.00 0.00 0.00 2.90
381 391 9.793259 ATGTGTTAAAGAAGAGGAGTTAAATGA 57.207 29.630 0.00 0.00 0.00 2.57
382 392 9.831737 CATGTGTTAAAGAAGAGGAGTTAAATG 57.168 33.333 0.00 0.00 0.00 2.32
383 393 8.515414 GCATGTGTTAAAGAAGAGGAGTTAAAT 58.485 33.333 0.00 0.00 0.00 1.40
384 394 7.307751 CGCATGTGTTAAAGAAGAGGAGTTAAA 60.308 37.037 0.00 0.00 0.00 1.52
385 395 6.147164 CGCATGTGTTAAAGAAGAGGAGTTAA 59.853 38.462 0.00 0.00 0.00 2.01
386 396 5.637810 CGCATGTGTTAAAGAAGAGGAGTTA 59.362 40.000 0.00 0.00 0.00 2.24
387 397 4.452455 CGCATGTGTTAAAGAAGAGGAGTT 59.548 41.667 0.00 0.00 0.00 3.01
388 398 3.997021 CGCATGTGTTAAAGAAGAGGAGT 59.003 43.478 0.00 0.00 0.00 3.85
389 399 4.245660 TCGCATGTGTTAAAGAAGAGGAG 58.754 43.478 6.09 0.00 0.00 3.69
390 400 4.245660 CTCGCATGTGTTAAAGAAGAGGA 58.754 43.478 6.09 0.00 0.00 3.71
391 401 3.997021 ACTCGCATGTGTTAAAGAAGAGG 59.003 43.478 6.09 0.00 0.00 3.69
392 402 5.597813 AACTCGCATGTGTTAAAGAAGAG 57.402 39.130 6.09 0.00 30.46 2.85
393 403 4.149922 CGAACTCGCATGTGTTAAAGAAGA 59.850 41.667 6.09 0.00 32.29 2.87
394 404 4.386230 CGAACTCGCATGTGTTAAAGAAG 58.614 43.478 6.09 0.00 32.29 2.85
395 405 3.185594 CCGAACTCGCATGTGTTAAAGAA 59.814 43.478 6.09 0.00 38.18 2.52
396 406 2.734606 CCGAACTCGCATGTGTTAAAGA 59.265 45.455 6.09 0.00 38.18 2.52
397 407 2.159707 CCCGAACTCGCATGTGTTAAAG 60.160 50.000 6.09 0.00 38.18 1.85
398 408 1.801771 CCCGAACTCGCATGTGTTAAA 59.198 47.619 6.09 0.00 38.18 1.52
399 409 1.001068 TCCCGAACTCGCATGTGTTAA 59.999 47.619 6.09 0.00 38.18 2.01
400 410 0.604073 TCCCGAACTCGCATGTGTTA 59.396 50.000 6.09 0.00 38.18 2.41
401 411 0.036388 ATCCCGAACTCGCATGTGTT 60.036 50.000 6.09 3.50 38.18 3.32
402 412 0.036388 AATCCCGAACTCGCATGTGT 60.036 50.000 6.09 0.00 38.18 3.72
403 413 0.374758 CAATCCCGAACTCGCATGTG 59.625 55.000 0.00 0.00 38.18 3.21
404 414 0.744414 CCAATCCCGAACTCGCATGT 60.744 55.000 0.00 0.00 38.18 3.21
405 415 0.461870 TCCAATCCCGAACTCGCATG 60.462 55.000 0.00 0.00 38.18 4.06
406 416 0.179073 CTCCAATCCCGAACTCGCAT 60.179 55.000 0.00 0.00 38.18 4.73
407 417 1.218047 CTCCAATCCCGAACTCGCA 59.782 57.895 0.00 0.00 38.18 5.10
408 418 1.521681 CCTCCAATCCCGAACTCGC 60.522 63.158 0.00 0.00 38.18 5.03
409 419 1.144057 CCCTCCAATCCCGAACTCG 59.856 63.158 0.00 0.00 39.44 4.18
410 420 0.618981 AACCCTCCAATCCCGAACTC 59.381 55.000 0.00 0.00 0.00 3.01
411 421 1.073098 AAACCCTCCAATCCCGAACT 58.927 50.000 0.00 0.00 0.00 3.01
412 422 1.173913 CAAACCCTCCAATCCCGAAC 58.826 55.000 0.00 0.00 0.00 3.95
413 423 0.039035 CCAAACCCTCCAATCCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
414 424 0.842905 TCCAAACCCTCCAATCCCGA 60.843 55.000 0.00 0.00 0.00 5.14
415 425 0.394352 CTCCAAACCCTCCAATCCCG 60.394 60.000 0.00 0.00 0.00 5.14
416 426 0.033109 CCTCCAAACCCTCCAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
417 427 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
418 428 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
419 429 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
420 430 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
421 431 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
422 432 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
423 433 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
424 434 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
425 435 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
426 436 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
429 439 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
430 440 9.507329 GAGTTAATGAGCATTTATTATCCTCCA 57.493 33.333 0.52 0.00 32.50 3.86
431 441 9.507329 TGAGTTAATGAGCATTTATTATCCTCC 57.493 33.333 0.52 0.00 32.50 4.30
477 487 1.212688 CCTCACCCATGCTTGGATACA 59.787 52.381 19.85 0.49 46.92 2.29
478 488 1.972872 CCTCACCCATGCTTGGATAC 58.027 55.000 19.85 0.00 46.92 2.24
479 489 0.183492 GCCTCACCCATGCTTGGATA 59.817 55.000 19.85 4.10 46.92 2.59
480 490 1.076485 GCCTCACCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
481 491 0.913934 TAGCCTCACCCATGCTTGGA 60.914 55.000 19.85 0.00 46.92 3.53
482 492 0.465097 CTAGCCTCACCCATGCTTGG 60.465 60.000 11.68 11.68 43.23 3.61
483 493 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
484 494 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
485 495 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
486 496 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
487 497 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
488 498 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
489 499 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
490 500 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
491 501 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
492 502 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
493 503 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
494 504 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
495 505 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
496 506 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
497 507 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
498 508 7.923414 AAATAGTGGGACTAAAACTTGCTAG 57.077 36.000 0.00 0.00 33.89 3.42
499 509 8.700439 AAAAATAGTGGGACTAAAACTTGCTA 57.300 30.769 0.00 0.00 33.89 3.49
500 510 7.597288 AAAAATAGTGGGACTAAAACTTGCT 57.403 32.000 0.00 0.00 33.89 3.91
501 511 8.573885 ACTAAAAATAGTGGGACTAAAACTTGC 58.426 33.333 0.00 0.00 33.89 4.01
503 513 9.856162 TGACTAAAAATAGTGGGACTAAAACTT 57.144 29.630 0.00 0.00 33.89 2.66
506 516 9.238368 CCATGACTAAAAATAGTGGGACTAAAA 57.762 33.333 0.00 0.00 33.89 1.52
507 517 7.832187 CCCATGACTAAAAATAGTGGGACTAAA 59.168 37.037 1.30 0.00 34.46 1.85
508 518 7.183112 TCCCATGACTAAAAATAGTGGGACTAA 59.817 37.037 6.15 0.00 35.88 2.24
509 519 6.674861 TCCCATGACTAAAAATAGTGGGACTA 59.325 38.462 6.15 0.00 35.88 2.59
510 520 5.491078 TCCCATGACTAAAAATAGTGGGACT 59.509 40.000 6.15 0.00 35.88 3.85
511 521 5.589050 GTCCCATGACTAAAAATAGTGGGAC 59.411 44.000 20.89 20.89 45.42 4.46
512 522 5.751586 GTCCCATGACTAAAAATAGTGGGA 58.248 41.667 6.15 6.15 37.44 4.37
524 534 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
526 536 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
527 537 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
528 538 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
529 539 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
530 540 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
531 541 3.602483 TGCTTGGATACGTTTTAGTCCC 58.398 45.455 0.00 0.00 42.51 4.46
532 542 4.272748 GGATGCTTGGATACGTTTTAGTCC 59.727 45.833 0.00 0.00 42.51 3.85
533 543 5.116882 AGGATGCTTGGATACGTTTTAGTC 58.883 41.667 0.00 0.00 42.51 2.59
534 544 5.099042 AGGATGCTTGGATACGTTTTAGT 57.901 39.130 0.00 0.00 42.51 2.24
535 545 5.360591 AGAGGATGCTTGGATACGTTTTAG 58.639 41.667 0.00 0.00 42.51 1.85
536 546 5.353394 AGAGGATGCTTGGATACGTTTTA 57.647 39.130 0.00 0.00 42.51 1.52
537 547 4.222124 AGAGGATGCTTGGATACGTTTT 57.778 40.909 0.00 0.00 42.51 2.43
538 548 3.914426 AGAGGATGCTTGGATACGTTT 57.086 42.857 0.00 0.00 42.51 3.60
539 549 4.345257 ACATAGAGGATGCTTGGATACGTT 59.655 41.667 0.00 0.00 39.39 3.99
540 550 3.898123 ACATAGAGGATGCTTGGATACGT 59.102 43.478 0.00 0.00 39.39 3.57
541 551 4.527509 ACATAGAGGATGCTTGGATACG 57.472 45.455 0.00 0.00 39.39 3.06
542 552 6.597832 ACTACATAGAGGATGCTTGGATAC 57.402 41.667 0.00 0.00 39.39 2.24
543 553 7.618019 AAACTACATAGAGGATGCTTGGATA 57.382 36.000 0.00 0.00 39.39 2.59
544 554 6.506538 AAACTACATAGAGGATGCTTGGAT 57.493 37.500 0.00 0.00 39.39 3.41
545 555 5.957771 AAACTACATAGAGGATGCTTGGA 57.042 39.130 0.00 0.00 39.39 3.53
546 556 6.115446 TGAAAACTACATAGAGGATGCTTGG 58.885 40.000 0.00 0.00 39.39 3.61
547 557 7.615582 TTGAAAACTACATAGAGGATGCTTG 57.384 36.000 0.00 0.00 39.39 4.01
548 558 7.665559 TGTTTGAAAACTACATAGAGGATGCTT 59.334 33.333 7.39 0.00 38.17 3.91
549 559 7.168219 TGTTTGAAAACTACATAGAGGATGCT 58.832 34.615 7.39 0.00 38.17 3.79
550 560 7.334421 TCTGTTTGAAAACTACATAGAGGATGC 59.666 37.037 7.39 0.00 38.17 3.91
551 561 8.777865 TCTGTTTGAAAACTACATAGAGGATG 57.222 34.615 7.39 0.00 39.35 3.51
552 562 9.388506 CATCTGTTTGAAAACTACATAGAGGAT 57.611 33.333 7.39 0.00 39.59 3.24
553 563 8.593679 TCATCTGTTTGAAAACTACATAGAGGA 58.406 33.333 7.39 5.72 39.59 3.71
554 564 8.777865 TCATCTGTTTGAAAACTACATAGAGG 57.222 34.615 7.39 3.75 39.59 3.69
555 565 8.386606 GCTCATCTGTTTGAAAACTACATAGAG 58.613 37.037 7.39 7.86 39.59 2.43
556 566 7.334421 GGCTCATCTGTTTGAAAACTACATAGA 59.666 37.037 7.39 2.26 39.59 1.98
557 567 7.119699 TGGCTCATCTGTTTGAAAACTACATAG 59.880 37.037 7.39 2.02 39.59 2.23
623 634 0.505655 GTTTGACGTGGCGTGTACTC 59.494 55.000 0.00 0.00 41.37 2.59
627 638 0.098025 CTTTGTTTGACGTGGCGTGT 59.902 50.000 0.00 0.00 41.37 4.49
651 662 2.594592 GGTGGTGGCTGCGACTTT 60.595 61.111 14.39 0.00 0.00 2.66
677 688 1.529713 GAAGGTGGCCGGAAACCAA 60.530 57.895 23.50 0.00 39.39 3.67
679 690 2.675423 GGAAGGTGGCCGGAAACC 60.675 66.667 16.23 16.23 36.66 3.27
680 691 3.053896 CGGAAGGTGGCCGGAAAC 61.054 66.667 5.05 0.96 44.87 2.78
752 766 2.285069 TATGACGGTGGGGCCTGT 60.285 61.111 0.84 0.00 34.25 4.00
756 770 2.504519 GGAGTATGACGGTGGGGC 59.495 66.667 0.00 0.00 0.00 5.80
757 771 2.812499 CGGAGTATGACGGTGGGG 59.188 66.667 0.00 0.00 0.00 4.96
758 772 2.106332 GCGGAGTATGACGGTGGG 59.894 66.667 0.00 0.00 0.00 4.61
761 775 4.203076 GGCGCGGAGTATGACGGT 62.203 66.667 8.83 0.00 0.00 4.83
837 858 5.568620 AGAGAGTGGTTGGAGTAAAATGT 57.431 39.130 0.00 0.00 0.00 2.71
860 881 4.496336 GCGGGGAGGAGCAATGCT 62.496 66.667 7.79 7.79 43.88 3.79
862 883 4.883354 GGGCGGGGAGGAGCAATG 62.883 72.222 0.00 0.00 34.54 2.82
892 913 2.099427 GCGAGAGAGGGAAAATACTCGT 59.901 50.000 0.00 0.00 45.45 4.18
902 923 1.529796 GAGGAGAGCGAGAGAGGGA 59.470 63.158 0.00 0.00 0.00 4.20
935 956 3.637273 GTGGAACAGGGGTCGGCT 61.637 66.667 0.00 0.00 41.80 5.52
936 957 3.192103 AAGTGGAACAGGGGTCGGC 62.192 63.158 0.00 0.00 41.80 5.54
945 966 1.534697 GGGTGGTGGAAGTGGAACA 59.465 57.895 0.00 0.00 41.43 3.18
946 967 1.599797 CGGGTGGTGGAAGTGGAAC 60.600 63.158 0.00 0.00 0.00 3.62
947 968 2.833227 CGGGTGGTGGAAGTGGAA 59.167 61.111 0.00 0.00 0.00 3.53
948 969 3.948719 GCGGGTGGTGGAAGTGGA 61.949 66.667 0.00 0.00 0.00 4.02
976 997 4.626081 GAGCAGGTGGTGTGCGGT 62.626 66.667 0.00 0.00 46.06 5.68
1583 1604 1.546476 CGGTGAGGTAGAAGCAGTTCT 59.454 52.381 0.00 0.00 45.48 3.01
1788 1809 1.813513 CGTGCCTTGTCTTTCTCCAT 58.186 50.000 0.00 0.00 0.00 3.41
1815 1836 2.526304 TCGTGTGGTTCCTCTTCTTG 57.474 50.000 0.00 0.00 0.00 3.02
1895 1916 1.148310 CAACTCGGCAATGTCGAACT 58.852 50.000 12.08 0.00 39.77 3.01
1905 1926 2.429930 CCCTTGGACAACTCGGCA 59.570 61.111 0.00 0.00 0.00 5.69
1941 1962 2.183300 CGGCCGATGAGGTTTCGA 59.817 61.111 24.07 0.00 43.70 3.71
1995 2016 2.040544 GGCAACCACAGACCCATCG 61.041 63.158 0.00 0.00 0.00 3.84
2151 2172 0.250234 CGAGGAACATCTGCTTCCCA 59.750 55.000 0.00 0.00 38.42 4.37
2181 2202 0.320683 CGAGCGATCCATTGGGCATA 60.321 55.000 2.09 0.00 0.00 3.14
2216 2237 0.176910 GCTGCTTCCTACTCTGTCCC 59.823 60.000 0.00 0.00 0.00 4.46
2268 2289 7.225145 CCTTTTGCCACATCCATTATTATGTTG 59.775 37.037 0.00 0.00 34.12 3.33
2292 2313 5.311649 ACCATAATGCAGATATTCCAGTCCT 59.688 40.000 0.00 0.00 0.00 3.85
2295 2316 5.945310 ACACCATAATGCAGATATTCCAGT 58.055 37.500 0.00 0.00 0.00 4.00
2478 2499 0.384477 GTCCATAGAGCGCGTACTCG 60.384 60.000 8.43 0.00 41.77 4.18
2514 2535 0.306840 CGCCGAAGCTATAGACGTCA 59.693 55.000 19.50 4.13 36.60 4.35
2790 2811 4.835615 GGTATCTCTGGTATGTCCATGTCT 59.164 45.833 0.00 0.00 46.12 3.41
2898 2919 4.479158 TGTCCCCATTATCCATTAAAGGC 58.521 43.478 0.00 0.00 29.02 4.35
2991 3013 9.060347 GCCTCATTCAGAAAGTCAATATAATCA 57.940 33.333 0.00 0.00 0.00 2.57
3043 3065 3.189495 TGCGAAAGTGACAAAGTTTGACA 59.811 39.130 22.23 18.55 31.28 3.58
3044 3066 3.542310 GTGCGAAAGTGACAAAGTTTGAC 59.458 43.478 22.23 16.11 31.28 3.18
3056 3078 1.526575 ATGGCCAAGGTGCGAAAGTG 61.527 55.000 10.96 0.00 0.00 3.16
3234 3262 4.724399 TGCTACCTTCAATTTCCTTGTGA 58.276 39.130 0.00 0.00 36.20 3.58
3311 3339 1.271379 GCAGGAAGACAAGTAGGCCAA 60.271 52.381 5.01 0.00 0.00 4.52
3425 3453 2.210013 AGGACGACCTGAGCAGCAA 61.210 57.895 5.39 0.00 45.92 3.91
3426 3454 2.601666 AGGACGACCTGAGCAGCA 60.602 61.111 5.39 0.00 45.92 4.41
3568 3597 6.314784 CAGTCCAATTGAATAACCGAAACTC 58.685 40.000 7.12 0.00 0.00 3.01
3615 3644 0.940126 GCATGCCTGTCTTCATACCG 59.060 55.000 6.36 0.00 0.00 4.02
3674 3704 7.764443 GTCATCTACTCAGCAACCAAATAACTA 59.236 37.037 0.00 0.00 0.00 2.24
3752 3782 4.453136 GGCGTGATCTTGGTTTTAGTACAA 59.547 41.667 0.00 0.00 0.00 2.41
3759 3789 1.613437 CAAGGGCGTGATCTTGGTTTT 59.387 47.619 0.00 0.00 37.35 2.43
3772 3802 2.867109 AATCATATCCTCCAAGGGCG 57.133 50.000 0.00 0.00 35.59 6.13
3839 4182 7.365497 TCAGTCTAGAATTAATCATCCTGCA 57.635 36.000 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.