Multiple sequence alignment - TraesCS1B01G275000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G275000 chr1B 100.000 3619 0 0 1 3619 482450150 482453768 0.000000e+00 6684.0
1 TraesCS1B01G275000 chr1B 97.761 134 2 1 340 472 613039586 613039453 2.810000e-56 230.0
2 TraesCS1B01G275000 chr1B 94.000 150 6 2 337 485 372226377 372226524 1.310000e-54 224.0
3 TraesCS1B01G275000 chr1A 93.756 3219 121 33 465 3619 459946442 459949644 0.000000e+00 4758.0
4 TraesCS1B01G275000 chr1D 97.288 1475 39 1 2146 3619 360388389 360389863 0.000000e+00 2501.0
5 TraesCS1B01G275000 chr1D 93.337 1666 62 17 527 2148 360386418 360388078 0.000000e+00 2416.0
6 TraesCS1B01G275000 chr3A 96.454 141 3 2 333 472 598561815 598561954 7.810000e-57 231.0
7 TraesCS1B01G275000 chr3A 87.958 191 23 0 1000 1190 651584498 651584688 3.640000e-55 226.0
8 TraesCS1B01G275000 chr3A 91.549 71 6 0 1300 1370 651585303 651585373 8.270000e-17 99.0
9 TraesCS1B01G275000 chr3A 84.286 70 7 2 245 313 610447104 610447170 8.390000e-07 65.8
10 TraesCS1B01G275000 chr5B 95.804 143 4 2 335 476 18076954 18077095 2.810000e-56 230.0
11 TraesCS1B01G275000 chr5B 95.804 143 4 2 338 479 711836947 711837088 2.810000e-56 230.0
12 TraesCS1B01G275000 chr5B 97.059 136 2 2 339 473 626068825 626068691 1.010000e-55 228.0
13 TraesCS1B01G275000 chr5B 85.897 78 8 3 241 317 470649498 470649423 3.000000e-11 80.5
14 TraesCS1B01G275000 chr7B 96.377 138 3 2 333 469 141907227 141907363 3.640000e-55 226.0
15 TraesCS1B01G275000 chr7B 84.848 66 9 1 245 310 663073706 663073642 8.390000e-07 65.8
16 TraesCS1B01G275000 chr3B 87.958 191 23 0 1000 1190 679642967 679643157 3.640000e-55 226.0
17 TraesCS1B01G275000 chr3B 92.810 153 7 3 343 494 40625521 40625372 6.080000e-53 219.0
18 TraesCS1B01G275000 chr3B 91.549 71 6 0 1300 1370 679643602 679643672 8.270000e-17 99.0
19 TraesCS1B01G275000 chr3B 85.294 68 8 1 245 312 815172383 815172318 6.480000e-08 69.4
20 TraesCS1B01G275000 chr2B 95.745 141 2 3 343 482 190237164 190237301 1.310000e-54 224.0
21 TraesCS1B01G275000 chr3D 87.435 191 24 0 1000 1190 516382180 516382370 1.690000e-53 220.0
22 TraesCS1B01G275000 chr3D 91.549 71 6 0 1300 1370 516382802 516382872 8.270000e-17 99.0
23 TraesCS1B01G275000 chr3D 90.000 60 6 0 167 226 403694767 403694826 1.080000e-10 78.7
24 TraesCS1B01G275000 chr3D 92.857 42 3 0 253 294 568492019 568491978 1.080000e-05 62.1
25 TraesCS1B01G275000 chr5A 86.765 68 8 1 245 312 28709966 28710032 1.390000e-09 75.0
26 TraesCS1B01G275000 chr2D 86.765 68 7 2 245 312 207560271 207560336 1.390000e-09 75.0
27 TraesCS1B01G275000 chr5D 84.058 69 9 2 245 312 40721115 40721182 8.390000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G275000 chr1B 482450150 482453768 3618 False 6684.0 6684 100.0000 1 3619 1 chr1B.!!$F2 3618
1 TraesCS1B01G275000 chr1A 459946442 459949644 3202 False 4758.0 4758 93.7560 465 3619 1 chr1A.!!$F1 3154
2 TraesCS1B01G275000 chr1D 360386418 360389863 3445 False 2458.5 2501 95.3125 527 3619 2 chr1D.!!$F1 3092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
364 365 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
1406 1467 0.040067 CAGCGGTTTCTTTCAGCACC 60.040 55.0 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1351 0.106819 GATCCTTGGCAGCCTGACAT 60.107 55.0 14.15 0.0 33.90 3.06 R
1574 1644 0.317770 CAAACGTTGAAGCGCCACAT 60.318 50.0 2.29 0.0 34.88 3.21 R
3144 3548 0.250234 CGGTGAAGATGCTTGAGGGA 59.750 55.0 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.902308 TTGCGTCCGACCTACATG 57.098 55.556 0.00 0.00 0.00 3.21
18 19 1.447140 TTGCGTCCGACCTACATGC 60.447 57.895 0.00 0.00 0.00 4.06
19 20 2.954868 GCGTCCGACCTACATGCG 60.955 66.667 0.00 0.00 0.00 4.73
20 21 2.795973 CGTCCGACCTACATGCGA 59.204 61.111 0.00 0.00 0.00 5.10
21 22 1.359117 CGTCCGACCTACATGCGAT 59.641 57.895 0.00 0.00 0.00 4.58
22 23 0.248907 CGTCCGACCTACATGCGATT 60.249 55.000 0.00 0.00 0.00 3.34
23 24 1.801395 CGTCCGACCTACATGCGATTT 60.801 52.381 0.00 0.00 0.00 2.17
24 25 2.277084 GTCCGACCTACATGCGATTTT 58.723 47.619 0.00 0.00 0.00 1.82
25 26 2.284417 GTCCGACCTACATGCGATTTTC 59.716 50.000 0.00 0.00 0.00 2.29
26 27 2.167693 TCCGACCTACATGCGATTTTCT 59.832 45.455 0.00 0.00 0.00 2.52
27 28 2.285220 CCGACCTACATGCGATTTTCTG 59.715 50.000 0.00 0.00 0.00 3.02
28 29 3.186909 CGACCTACATGCGATTTTCTGA 58.813 45.455 0.00 0.00 0.00 3.27
29 30 3.804325 CGACCTACATGCGATTTTCTGAT 59.196 43.478 0.00 0.00 0.00 2.90
30 31 4.982295 CGACCTACATGCGATTTTCTGATA 59.018 41.667 0.00 0.00 0.00 2.15
31 32 5.462068 CGACCTACATGCGATTTTCTGATAA 59.538 40.000 0.00 0.00 0.00 1.75
32 33 6.019075 CGACCTACATGCGATTTTCTGATAAA 60.019 38.462 0.00 0.00 0.00 1.40
33 34 7.465379 CGACCTACATGCGATTTTCTGATAAAA 60.465 37.037 0.00 0.00 0.00 1.52
34 35 8.225603 ACCTACATGCGATTTTCTGATAAAAT 57.774 30.769 0.00 0.00 32.98 1.82
35 36 8.131100 ACCTACATGCGATTTTCTGATAAAATG 58.869 33.333 0.00 0.00 30.68 2.32
36 37 8.344831 CCTACATGCGATTTTCTGATAAAATGA 58.655 33.333 0.00 0.00 30.68 2.57
37 38 9.888878 CTACATGCGATTTTCTGATAAAATGAT 57.111 29.630 0.00 0.00 30.68 2.45
39 40 9.669353 ACATGCGATTTTCTGATAAAATGATAC 57.331 29.630 0.00 0.00 30.68 2.24
40 41 8.834212 CATGCGATTTTCTGATAAAATGATACG 58.166 33.333 0.71 0.00 30.68 3.06
41 42 8.137210 TGCGATTTTCTGATAAAATGATACGA 57.863 30.769 0.71 0.00 30.68 3.43
42 43 8.773645 TGCGATTTTCTGATAAAATGATACGAT 58.226 29.630 0.71 0.00 30.68 3.73
43 44 9.599322 GCGATTTTCTGATAAAATGATACGATT 57.401 29.630 0.71 0.00 30.68 3.34
63 64 7.420800 ACGATTTTCTGATAAATGATCCTTGC 58.579 34.615 0.00 0.00 33.07 4.01
64 65 7.284034 ACGATTTTCTGATAAATGATCCTTGCT 59.716 33.333 0.00 0.00 33.07 3.91
65 66 7.802251 CGATTTTCTGATAAATGATCCTTGCTC 59.198 37.037 0.00 0.00 33.07 4.26
66 67 7.943079 TTTTCTGATAAATGATCCTTGCTCA 57.057 32.000 0.00 0.00 33.07 4.26
67 68 7.943079 TTTCTGATAAATGATCCTTGCTCAA 57.057 32.000 0.00 0.00 33.07 3.02
68 69 7.563888 TTCTGATAAATGATCCTTGCTCAAG 57.436 36.000 2.74 2.74 38.14 3.02
69 70 6.656902 TCTGATAAATGATCCTTGCTCAAGT 58.343 36.000 8.60 0.00 36.72 3.16
70 71 7.795047 TCTGATAAATGATCCTTGCTCAAGTA 58.205 34.615 8.60 0.00 36.72 2.24
71 72 7.712639 TCTGATAAATGATCCTTGCTCAAGTAC 59.287 37.037 8.60 0.00 36.72 2.73
72 73 7.337938 TGATAAATGATCCTTGCTCAAGTACA 58.662 34.615 8.60 6.13 36.72 2.90
73 74 7.828717 TGATAAATGATCCTTGCTCAAGTACAA 59.171 33.333 8.60 0.00 36.72 2.41
74 75 8.757982 ATAAATGATCCTTGCTCAAGTACAAT 57.242 30.769 8.60 0.00 36.72 2.71
75 76 7.472334 AAATGATCCTTGCTCAAGTACAATT 57.528 32.000 8.60 3.36 36.72 2.32
76 77 7.472334 AATGATCCTTGCTCAAGTACAATTT 57.528 32.000 8.60 0.00 36.72 1.82
77 78 6.500684 TGATCCTTGCTCAAGTACAATTTC 57.499 37.500 8.60 0.00 36.72 2.17
78 79 5.122239 TGATCCTTGCTCAAGTACAATTTCG 59.878 40.000 8.60 0.00 36.72 3.46
79 80 4.385825 TCCTTGCTCAAGTACAATTTCGT 58.614 39.130 8.60 0.00 36.72 3.85
80 81 4.451096 TCCTTGCTCAAGTACAATTTCGTC 59.549 41.667 8.60 0.00 36.72 4.20
81 82 4.383774 TTGCTCAAGTACAATTTCGTCG 57.616 40.909 0.00 0.00 0.00 5.12
82 83 2.156891 TGCTCAAGTACAATTTCGTCGC 59.843 45.455 0.00 0.00 0.00 5.19
83 84 2.156891 GCTCAAGTACAATTTCGTCGCA 59.843 45.455 0.00 0.00 0.00 5.10
84 85 3.722123 CTCAAGTACAATTTCGTCGCAC 58.278 45.455 0.00 0.00 0.00 5.34
85 86 3.124560 TCAAGTACAATTTCGTCGCACA 58.875 40.909 0.00 0.00 0.00 4.57
86 87 3.556365 TCAAGTACAATTTCGTCGCACAA 59.444 39.130 0.00 0.00 0.00 3.33
87 88 3.788434 AGTACAATTTCGTCGCACAAG 57.212 42.857 0.00 0.00 0.00 3.16
88 89 2.096417 AGTACAATTTCGTCGCACAAGC 60.096 45.455 0.00 0.00 37.42 4.01
89 90 0.660488 ACAATTTCGTCGCACAAGCA 59.340 45.000 0.00 0.00 42.27 3.91
90 91 1.266718 ACAATTTCGTCGCACAAGCAT 59.733 42.857 0.00 0.00 42.27 3.79
91 92 1.906966 CAATTTCGTCGCACAAGCATC 59.093 47.619 0.00 0.00 42.27 3.91
92 93 0.095245 ATTTCGTCGCACAAGCATCG 59.905 50.000 0.00 0.00 42.27 3.84
93 94 1.218875 TTTCGTCGCACAAGCATCGT 61.219 50.000 0.00 0.00 42.27 3.73
94 95 0.387494 TTCGTCGCACAAGCATCGTA 60.387 50.000 0.00 0.00 42.27 3.43
95 96 0.179148 TCGTCGCACAAGCATCGTAT 60.179 50.000 0.00 0.00 42.27 3.06
96 97 0.645355 CGTCGCACAAGCATCGTATT 59.355 50.000 0.00 0.00 42.27 1.89
97 98 1.849829 CGTCGCACAAGCATCGTATTA 59.150 47.619 0.00 0.00 42.27 0.98
98 99 2.280445 CGTCGCACAAGCATCGTATTAA 59.720 45.455 0.00 0.00 42.27 1.40
99 100 3.241836 CGTCGCACAAGCATCGTATTAAA 60.242 43.478 0.00 0.00 42.27 1.52
100 101 4.643953 GTCGCACAAGCATCGTATTAAAA 58.356 39.130 0.00 0.00 42.27 1.52
101 102 5.083389 GTCGCACAAGCATCGTATTAAAAA 58.917 37.500 0.00 0.00 42.27 1.94
102 103 5.737290 GTCGCACAAGCATCGTATTAAAAAT 59.263 36.000 0.00 0.00 42.27 1.82
103 104 6.250527 GTCGCACAAGCATCGTATTAAAAATT 59.749 34.615 0.00 0.00 42.27 1.82
104 105 6.250315 TCGCACAAGCATCGTATTAAAAATTG 59.750 34.615 0.00 0.00 42.27 2.32
105 106 6.033407 CGCACAAGCATCGTATTAAAAATTGT 59.967 34.615 0.00 0.00 42.27 2.71
106 107 7.383361 GCACAAGCATCGTATTAAAAATTGTC 58.617 34.615 0.00 0.00 41.58 3.18
107 108 7.591407 CACAAGCATCGTATTAAAAATTGTCG 58.409 34.615 0.00 0.00 0.00 4.35
108 109 6.745450 ACAAGCATCGTATTAAAAATTGTCGG 59.255 34.615 0.00 0.00 0.00 4.79
109 110 6.671614 AGCATCGTATTAAAAATTGTCGGA 57.328 33.333 0.00 0.00 0.00 4.55
110 111 6.483687 AGCATCGTATTAAAAATTGTCGGAC 58.516 36.000 0.00 0.00 0.00 4.79
111 112 5.391433 GCATCGTATTAAAAATTGTCGGACG 59.609 40.000 3.34 0.00 0.00 4.79
112 113 6.471839 CATCGTATTAAAAATTGTCGGACGT 58.528 36.000 3.34 0.00 0.00 4.34
113 114 5.845576 TCGTATTAAAAATTGTCGGACGTG 58.154 37.500 0.00 0.00 0.00 4.49
114 115 5.404968 TCGTATTAAAAATTGTCGGACGTGT 59.595 36.000 0.00 0.00 0.00 4.49
115 116 6.584184 TCGTATTAAAAATTGTCGGACGTGTA 59.416 34.615 0.00 0.00 0.00 2.90
116 117 6.890870 CGTATTAAAAATTGTCGGACGTGTAG 59.109 38.462 0.00 0.00 0.00 2.74
117 118 3.531262 AAAAATTGTCGGACGTGTAGC 57.469 42.857 0.00 0.00 0.00 3.58
118 119 2.157834 AAATTGTCGGACGTGTAGCA 57.842 45.000 0.00 0.00 0.00 3.49
119 120 1.425412 AATTGTCGGACGTGTAGCAC 58.575 50.000 0.00 0.00 0.00 4.40
120 121 0.315886 ATTGTCGGACGTGTAGCACA 59.684 50.000 0.00 0.00 33.40 4.57
121 122 0.595567 TTGTCGGACGTGTAGCACAC 60.596 55.000 0.00 8.75 45.26 3.82
122 123 1.285023 GTCGGACGTGTAGCACACT 59.715 57.895 14.60 5.10 46.46 3.55
123 124 0.518636 GTCGGACGTGTAGCACACTA 59.481 55.000 14.60 0.00 46.46 2.74
124 125 1.069022 GTCGGACGTGTAGCACACTAA 60.069 52.381 14.60 0.00 46.46 2.24
125 126 1.069022 TCGGACGTGTAGCACACTAAC 60.069 52.381 14.60 7.73 46.46 2.34
126 127 1.335233 CGGACGTGTAGCACACTAACA 60.335 52.381 14.60 0.00 46.46 2.41
127 128 2.056577 GGACGTGTAGCACACTAACAC 58.943 52.381 14.60 0.00 46.46 3.32
128 129 2.288030 GGACGTGTAGCACACTAACACT 60.288 50.000 14.60 0.00 46.46 3.55
129 130 2.724690 GACGTGTAGCACACTAACACTG 59.275 50.000 14.60 3.55 46.46 3.66
130 131 1.455786 CGTGTAGCACACTAACACTGC 59.544 52.381 14.60 0.00 46.46 4.40
131 132 2.755650 GTGTAGCACACTAACACTGCT 58.244 47.619 10.87 0.00 45.27 4.24
132 133 2.731976 GTGTAGCACACTAACACTGCTC 59.268 50.000 10.87 0.00 45.27 4.26
133 134 2.288825 TGTAGCACACTAACACTGCTCC 60.289 50.000 0.00 0.00 40.47 4.70
134 135 0.035458 AGCACACTAACACTGCTCCC 59.965 55.000 0.00 0.00 36.50 4.30
135 136 0.250295 GCACACTAACACTGCTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
136 137 1.512926 CACACTAACACTGCTCCCAC 58.487 55.000 0.00 0.00 0.00 4.61
137 138 1.128200 ACACTAACACTGCTCCCACA 58.872 50.000 0.00 0.00 0.00 4.17
138 139 1.488812 ACACTAACACTGCTCCCACAA 59.511 47.619 0.00 0.00 0.00 3.33
139 140 2.146342 CACTAACACTGCTCCCACAAG 58.854 52.381 0.00 0.00 0.00 3.16
140 141 2.047061 ACTAACACTGCTCCCACAAGA 58.953 47.619 0.00 0.00 0.00 3.02
141 142 2.639839 ACTAACACTGCTCCCACAAGAT 59.360 45.455 0.00 0.00 0.00 2.40
142 143 2.664402 AACACTGCTCCCACAAGATT 57.336 45.000 0.00 0.00 0.00 2.40
143 144 3.788227 AACACTGCTCCCACAAGATTA 57.212 42.857 0.00 0.00 0.00 1.75
144 145 3.059352 ACACTGCTCCCACAAGATTAC 57.941 47.619 0.00 0.00 0.00 1.89
145 146 2.639839 ACACTGCTCCCACAAGATTACT 59.360 45.455 0.00 0.00 0.00 2.24
146 147 3.005554 CACTGCTCCCACAAGATTACTG 58.994 50.000 0.00 0.00 0.00 2.74
147 148 2.012673 CTGCTCCCACAAGATTACTGC 58.987 52.381 0.00 0.00 0.00 4.40
148 149 1.340017 TGCTCCCACAAGATTACTGCC 60.340 52.381 0.00 0.00 0.00 4.85
149 150 1.340017 GCTCCCACAAGATTACTGCCA 60.340 52.381 0.00 0.00 0.00 4.92
150 151 2.879756 GCTCCCACAAGATTACTGCCAA 60.880 50.000 0.00 0.00 0.00 4.52
151 152 3.012518 CTCCCACAAGATTACTGCCAAG 58.987 50.000 0.00 0.00 0.00 3.61
152 153 2.094675 CCCACAAGATTACTGCCAAGG 58.905 52.381 0.00 0.00 0.00 3.61
153 154 2.290896 CCCACAAGATTACTGCCAAGGA 60.291 50.000 0.00 0.00 0.00 3.36
154 155 2.749621 CCACAAGATTACTGCCAAGGAC 59.250 50.000 0.00 0.00 0.00 3.85
155 156 2.749621 CACAAGATTACTGCCAAGGACC 59.250 50.000 0.00 0.00 0.00 4.46
156 157 2.375174 ACAAGATTACTGCCAAGGACCA 59.625 45.455 0.00 0.00 0.00 4.02
157 158 3.010584 ACAAGATTACTGCCAAGGACCAT 59.989 43.478 0.00 0.00 0.00 3.55
158 159 3.287867 AGATTACTGCCAAGGACCATG 57.712 47.619 0.00 0.00 0.00 3.66
159 160 2.846206 AGATTACTGCCAAGGACCATGA 59.154 45.455 0.00 0.00 0.00 3.07
160 161 2.787473 TTACTGCCAAGGACCATGAG 57.213 50.000 0.00 0.00 0.00 2.90
161 162 0.911769 TACTGCCAAGGACCATGAGG 59.088 55.000 0.00 0.00 42.21 3.86
176 177 5.227569 CCATGAGGTATATGTGGTAAGCA 57.772 43.478 0.00 0.00 0.00 3.91
177 178 5.620206 CCATGAGGTATATGTGGTAAGCAA 58.380 41.667 0.00 0.00 0.00 3.91
178 179 6.061441 CCATGAGGTATATGTGGTAAGCAAA 58.939 40.000 0.00 0.00 0.00 3.68
179 180 6.545666 CCATGAGGTATATGTGGTAAGCAAAA 59.454 38.462 0.00 0.00 0.00 2.44
180 181 7.231317 CCATGAGGTATATGTGGTAAGCAAAAT 59.769 37.037 0.00 0.00 0.00 1.82
181 182 7.801716 TGAGGTATATGTGGTAAGCAAAATC 57.198 36.000 0.00 0.00 0.00 2.17
182 183 7.573710 TGAGGTATATGTGGTAAGCAAAATCT 58.426 34.615 0.00 0.00 0.00 2.40
183 184 8.710239 TGAGGTATATGTGGTAAGCAAAATCTA 58.290 33.333 0.00 0.00 0.00 1.98
184 185 9.726438 GAGGTATATGTGGTAAGCAAAATCTAT 57.274 33.333 0.00 0.00 0.00 1.98
185 186 9.507329 AGGTATATGTGGTAAGCAAAATCTATG 57.493 33.333 0.00 0.00 0.00 2.23
186 187 9.502091 GGTATATGTGGTAAGCAAAATCTATGA 57.498 33.333 0.00 0.00 0.00 2.15
223 224 9.686683 ATGATGATTTAGGTTGTTAGCTTTACT 57.313 29.630 0.00 0.00 33.36 2.24
224 225 9.515226 TGATGATTTAGGTTGTTAGCTTTACTT 57.485 29.630 0.00 0.00 33.36 2.24
227 228 9.959749 TGATTTAGGTTGTTAGCTTTACTTTTG 57.040 29.630 0.00 0.00 33.36 2.44
230 231 8.741603 TTAGGTTGTTAGCTTTACTTTTGAGT 57.258 30.769 0.00 0.00 33.36 3.41
231 232 7.640597 AGGTTGTTAGCTTTACTTTTGAGTT 57.359 32.000 0.00 0.00 0.00 3.01
232 233 8.063200 AGGTTGTTAGCTTTACTTTTGAGTTT 57.937 30.769 0.00 0.00 0.00 2.66
233 234 8.528643 AGGTTGTTAGCTTTACTTTTGAGTTTT 58.471 29.630 0.00 0.00 0.00 2.43
234 235 8.592155 GGTTGTTAGCTTTACTTTTGAGTTTTG 58.408 33.333 0.00 0.00 0.00 2.44
235 236 9.349145 GTTGTTAGCTTTACTTTTGAGTTTTGA 57.651 29.630 0.00 0.00 0.00 2.69
236 237 9.915629 TTGTTAGCTTTACTTTTGAGTTTTGAA 57.084 25.926 0.00 0.00 0.00 2.69
237 238 9.915629 TGTTAGCTTTACTTTTGAGTTTTGAAA 57.084 25.926 0.00 0.00 0.00 2.69
251 252 9.781834 TTGAGTTTTGAAAAGTACATACTTGTG 57.218 29.630 5.08 0.00 45.17 3.33
252 253 8.402472 TGAGTTTTGAAAAGTACATACTTGTGG 58.598 33.333 5.08 0.00 45.17 4.17
253 254 8.288689 AGTTTTGAAAAGTACATACTTGTGGT 57.711 30.769 5.08 0.00 45.17 4.16
254 255 8.188139 AGTTTTGAAAAGTACATACTTGTGGTG 58.812 33.333 5.08 0.00 45.17 4.17
255 256 7.633193 TTTGAAAAGTACATACTTGTGGTGT 57.367 32.000 5.08 0.00 45.17 4.16
256 257 7.633193 TTGAAAAGTACATACTTGTGGTGTT 57.367 32.000 5.08 0.00 45.17 3.32
257 258 7.254227 TGAAAAGTACATACTTGTGGTGTTC 57.746 36.000 5.08 5.23 45.17 3.18
258 259 7.051623 TGAAAAGTACATACTTGTGGTGTTCT 58.948 34.615 5.08 0.00 45.17 3.01
259 260 7.554835 TGAAAAGTACATACTTGTGGTGTTCTT 59.445 33.333 5.08 6.95 45.17 2.52
260 261 7.875327 AAAGTACATACTTGTGGTGTTCTTT 57.125 32.000 5.08 13.86 45.17 2.52
261 262 6.861065 AGTACATACTTGTGGTGTTCTTTG 57.139 37.500 0.00 0.00 36.53 2.77
262 263 6.354130 AGTACATACTTGTGGTGTTCTTTGT 58.646 36.000 0.00 0.00 36.53 2.83
263 264 7.502696 AGTACATACTTGTGGTGTTCTTTGTA 58.497 34.615 0.00 0.00 36.53 2.41
264 265 6.613755 ACATACTTGTGGTGTTCTTTGTAC 57.386 37.500 0.00 0.00 33.85 2.90
265 266 6.354130 ACATACTTGTGGTGTTCTTTGTACT 58.646 36.000 0.00 0.00 33.85 2.73
266 267 7.502696 ACATACTTGTGGTGTTCTTTGTACTA 58.497 34.615 0.00 0.00 33.85 1.82
267 268 7.988599 ACATACTTGTGGTGTTCTTTGTACTAA 59.011 33.333 0.00 0.00 33.85 2.24
268 269 6.673154 ACTTGTGGTGTTCTTTGTACTAAC 57.327 37.500 0.00 0.00 0.00 2.34
269 270 6.412214 ACTTGTGGTGTTCTTTGTACTAACT 58.588 36.000 0.00 0.00 0.00 2.24
270 271 6.882678 ACTTGTGGTGTTCTTTGTACTAACTT 59.117 34.615 0.00 0.00 0.00 2.66
271 272 6.671614 TGTGGTGTTCTTTGTACTAACTTG 57.328 37.500 0.00 0.00 0.00 3.16
272 273 6.408035 TGTGGTGTTCTTTGTACTAACTTGA 58.592 36.000 0.00 0.00 0.00 3.02
273 274 6.314400 TGTGGTGTTCTTTGTACTAACTTGAC 59.686 38.462 0.00 0.00 0.00 3.18
274 275 6.314400 GTGGTGTTCTTTGTACTAACTTGACA 59.686 38.462 0.00 0.00 0.00 3.58
275 276 6.537301 TGGTGTTCTTTGTACTAACTTGACAG 59.463 38.462 0.00 0.00 0.00 3.51
276 277 6.537660 GGTGTTCTTTGTACTAACTTGACAGT 59.462 38.462 0.00 0.00 33.11 3.55
277 278 7.065443 GGTGTTCTTTGTACTAACTTGACAGTT 59.935 37.037 0.00 0.00 45.73 3.16
278 279 7.903431 GTGTTCTTTGTACTAACTTGACAGTTG 59.097 37.037 0.00 0.00 43.54 3.16
279 280 7.820386 TGTTCTTTGTACTAACTTGACAGTTGA 59.180 33.333 0.00 0.00 43.54 3.18
280 281 8.827677 GTTCTTTGTACTAACTTGACAGTTGAT 58.172 33.333 0.00 0.00 43.54 2.57
281 282 8.589335 TCTTTGTACTAACTTGACAGTTGATC 57.411 34.615 0.00 0.00 43.54 2.92
282 283 8.201464 TCTTTGTACTAACTTGACAGTTGATCA 58.799 33.333 0.00 0.00 43.54 2.92
283 284 8.725405 TTTGTACTAACTTGACAGTTGATCAA 57.275 30.769 3.38 3.38 43.54 2.57
284 285 8.902540 TTGTACTAACTTGACAGTTGATCAAT 57.097 30.769 12.12 0.00 43.54 2.57
285 286 9.990360 TTGTACTAACTTGACAGTTGATCAATA 57.010 29.630 12.12 0.00 43.54 1.90
286 287 9.639601 TGTACTAACTTGACAGTTGATCAATAG 57.360 33.333 12.12 9.76 43.54 1.73
287 288 9.856488 GTACTAACTTGACAGTTGATCAATAGA 57.144 33.333 12.12 0.00 43.54 1.98
289 290 9.950496 ACTAACTTGACAGTTGATCAATAGAAT 57.050 29.630 12.12 0.00 43.54 2.40
291 292 7.621428 ACTTGACAGTTGATCAATAGAATGG 57.379 36.000 12.12 3.74 35.57 3.16
292 293 7.397221 ACTTGACAGTTGATCAATAGAATGGA 58.603 34.615 12.12 0.00 35.57 3.41
293 294 7.884877 ACTTGACAGTTGATCAATAGAATGGAA 59.115 33.333 12.12 3.74 35.57 3.53
294 295 7.854557 TGACAGTTGATCAATAGAATGGAAG 57.145 36.000 12.12 0.00 0.00 3.46
295 296 7.397221 TGACAGTTGATCAATAGAATGGAAGT 58.603 34.615 12.12 0.00 0.00 3.01
296 297 7.884877 TGACAGTTGATCAATAGAATGGAAGTT 59.115 33.333 12.12 0.00 0.00 2.66
297 298 9.383519 GACAGTTGATCAATAGAATGGAAGTTA 57.616 33.333 12.12 0.00 0.00 2.24
298 299 9.911788 ACAGTTGATCAATAGAATGGAAGTTAT 57.088 29.630 12.12 0.00 0.00 1.89
332 333 5.632034 AAAGAGTACATAATCCACCCTCC 57.368 43.478 0.00 0.00 0.00 4.30
333 334 4.280789 AGAGTACATAATCCACCCTCCA 57.719 45.455 0.00 0.00 0.00 3.86
334 335 4.631234 AGAGTACATAATCCACCCTCCAA 58.369 43.478 0.00 0.00 0.00 3.53
335 336 5.036916 AGAGTACATAATCCACCCTCCAAA 58.963 41.667 0.00 0.00 0.00 3.28
336 337 5.491078 AGAGTACATAATCCACCCTCCAAAA 59.509 40.000 0.00 0.00 0.00 2.44
337 338 6.011981 AGAGTACATAATCCACCCTCCAAAAA 60.012 38.462 0.00 0.00 0.00 1.94
338 339 5.949952 AGTACATAATCCACCCTCCAAAAAC 59.050 40.000 0.00 0.00 0.00 2.43
339 340 4.746466 ACATAATCCACCCTCCAAAAACA 58.254 39.130 0.00 0.00 0.00 2.83
340 341 5.151454 ACATAATCCACCCTCCAAAAACAA 58.849 37.500 0.00 0.00 0.00 2.83
341 342 5.245977 ACATAATCCACCCTCCAAAAACAAG 59.754 40.000 0.00 0.00 0.00 3.16
342 343 2.838637 TCCACCCTCCAAAAACAAGT 57.161 45.000 0.00 0.00 0.00 3.16
343 344 3.955524 TCCACCCTCCAAAAACAAGTA 57.044 42.857 0.00 0.00 0.00 2.24
344 345 3.558033 TCCACCCTCCAAAAACAAGTAC 58.442 45.455 0.00 0.00 0.00 2.73
345 346 3.203487 TCCACCCTCCAAAAACAAGTACT 59.797 43.478 0.00 0.00 0.00 2.73
346 347 3.568430 CCACCCTCCAAAAACAAGTACTC 59.432 47.826 0.00 0.00 0.00 2.59
347 348 3.568430 CACCCTCCAAAAACAAGTACTCC 59.432 47.826 0.00 0.00 0.00 3.85
348 349 3.154710 CCCTCCAAAAACAAGTACTCCC 58.845 50.000 0.00 0.00 0.00 4.30
349 350 3.181433 CCCTCCAAAAACAAGTACTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
350 351 4.072839 CCTCCAAAAACAAGTACTCCCTC 58.927 47.826 0.00 0.00 0.00 4.30
351 352 4.072839 CTCCAAAAACAAGTACTCCCTCC 58.927 47.826 0.00 0.00 0.00 4.30
352 353 2.812011 CCAAAAACAAGTACTCCCTCCG 59.188 50.000 0.00 0.00 0.00 4.63
353 354 3.473625 CAAAAACAAGTACTCCCTCCGT 58.526 45.455 0.00 0.00 0.00 4.69
354 355 3.397849 AAAACAAGTACTCCCTCCGTC 57.602 47.619 0.00 0.00 0.00 4.79
355 356 1.264295 AACAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
356 357 0.964358 ACAAGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
357 358 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
358 359 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
359 360 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
360 361 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
361 362 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
362 363 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
363 364 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
364 365 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
365 366 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
366 367 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
367 368 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
368 369 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
369 370 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
370 371 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
371 372 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
372 373 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
373 374 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
374 375 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
375 376 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
376 377 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
377 378 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
378 379 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
379 380 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
380 381 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
388 389 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
389 390 9.880157 CTTGTCATCAAAATGAATAAAAGGGAT 57.120 29.630 0.00 0.00 43.42 3.85
390 391 9.656040 TTGTCATCAAAATGAATAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
391 392 8.814931 TGTCATCAAAATGAATAAAAGGGATGT 58.185 29.630 0.00 0.00 43.42 3.06
431 432 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
432 433 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
433 434 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
434 435 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
435 436 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
436 437 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
437 438 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
438 439 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
439 440 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
440 441 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
441 442 6.232692 ACATCCCTTTTTGTCCATTTTGATG 58.767 36.000 0.00 0.00 33.80 3.07
442 443 6.043012 ACATCCCTTTTTGTCCATTTTGATGA 59.957 34.615 0.00 0.00 32.39 2.92
443 444 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
444 445 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
445 446 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
446 447 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
447 448 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
448 449 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
449 450 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
450 451 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
451 452 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
452 453 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
453 454 9.829507 TTGTCCATTTTGATGACAAGTATTTTT 57.170 25.926 0.00 0.00 37.32 1.94
454 455 9.258826 TGTCCATTTTGATGACAAGTATTTTTG 57.741 29.630 0.00 0.00 37.32 2.44
455 456 8.711457 GTCCATTTTGATGACAAGTATTTTTGG 58.289 33.333 0.00 0.00 37.32 3.28
456 457 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
457 458 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
458 459 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
459 460 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
460 461 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
461 462 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
462 463 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
463 464 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
504 506 2.038863 TTACTGCCAAGGAGAAGGGA 57.961 50.000 0.00 0.00 0.00 4.20
505 507 2.038863 TACTGCCAAGGAGAAGGGAA 57.961 50.000 0.00 0.00 0.00 3.97
531 533 8.884124 AAAAAGGGAGTCTATGAATCAATGAA 57.116 30.769 0.00 0.00 0.00 2.57
532 534 9.484806 AAAAAGGGAGTCTATGAATCAATGAAT 57.515 29.630 0.00 0.00 0.00 2.57
576 578 1.614413 ACGCTCCCCGCAAAAATAAAA 59.386 42.857 0.00 0.00 41.76 1.52
579 581 2.028476 GCTCCCCGCAAAAATAAAAGGT 60.028 45.455 0.00 0.00 38.92 3.50
580 582 3.584834 CTCCCCGCAAAAATAAAAGGTG 58.415 45.455 0.00 0.00 0.00 4.00
583 585 4.101119 TCCCCGCAAAAATAAAAGGTGAAA 59.899 37.500 0.00 0.00 0.00 2.69
584 586 4.816925 CCCCGCAAAAATAAAAGGTGAAAA 59.183 37.500 0.00 0.00 0.00 2.29
585 587 5.471797 CCCCGCAAAAATAAAAGGTGAAAAT 59.528 36.000 0.00 0.00 0.00 1.82
586 588 6.369799 CCCGCAAAAATAAAAGGTGAAAATG 58.630 36.000 0.00 0.00 0.00 2.32
675 685 2.684499 GGAGCCCCTTCCCTCCAAG 61.684 68.421 1.98 0.00 45.55 3.61
676 686 1.925972 GAGCCCCTTCCCTCCAAGT 60.926 63.158 0.00 0.00 0.00 3.16
678 688 2.985116 GCCCCTTCCCTCCAAGTCC 61.985 68.421 0.00 0.00 0.00 3.85
819 834 1.214305 TGGCAGCCACCCTCCTTTAT 61.214 55.000 11.22 0.00 0.00 1.40
928 947 0.545309 TCCACAGAGACAAGGGAGGG 60.545 60.000 0.00 0.00 0.00 4.30
936 955 0.978667 GACAAGGGAGGGAGGAGTCC 60.979 65.000 0.00 0.00 43.05 3.85
1240 1278 3.523564 ACCCTTTATGCTTCTAGCCAAGA 59.476 43.478 0.00 0.00 41.51 3.02
1259 1297 5.530543 CCAAGAGCTCTGTTTCTTCTTCTTT 59.469 40.000 19.06 0.00 31.53 2.52
1294 1351 2.586425 AGCTGCTAACTTTGCCTTTGA 58.414 42.857 0.00 0.00 0.00 2.69
1307 1368 0.609957 CCTTTGATGTCAGGCTGCCA 60.610 55.000 22.65 4.75 0.00 4.92
1340 1401 0.903454 AGTACCAGACCAACTCCGGG 60.903 60.000 0.00 0.00 0.00 5.73
1406 1467 0.040067 CAGCGGTTTCTTTCAGCACC 60.040 55.000 0.00 0.00 0.00 5.01
1452 1513 6.070251 AGTCTGAAAACCCTGGAAATGTTTTT 60.070 34.615 11.22 1.29 41.01 1.94
1574 1644 8.084073 CAGCTTTGATTTCTTTCCAATTCTACA 58.916 33.333 0.00 0.00 0.00 2.74
1577 1647 9.918630 CTTTGATTTCTTTCCAATTCTACATGT 57.081 29.630 2.69 2.69 0.00 3.21
1581 1651 3.689161 TCTTTCCAATTCTACATGTGGCG 59.311 43.478 9.11 0.00 0.00 5.69
1588 1658 1.438651 TCTACATGTGGCGCTTCAAC 58.561 50.000 9.11 1.47 0.00 3.18
1607 1677 7.274904 GCTTCAACGTTTGTATGAGTATGACTA 59.725 37.037 0.00 0.00 0.00 2.59
1717 1788 2.669569 CACCAACGGCCAGACCAG 60.670 66.667 2.24 0.00 39.03 4.00
1749 1824 4.263727 ACAAGATGGTAATGCAGGGTGTAA 60.264 41.667 0.00 0.00 0.00 2.41
1752 1827 4.949856 AGATGGTAATGCAGGGTGTAAAAG 59.050 41.667 0.00 0.00 0.00 2.27
1777 1852 4.388485 TCAGAGCTTGCAAGTGTTTCATA 58.612 39.130 26.55 9.48 0.00 2.15
1779 1854 5.122869 TCAGAGCTTGCAAGTGTTTCATATC 59.877 40.000 26.55 6.78 0.00 1.63
1924 2000 4.104102 TCCTTCTGTACACCATGGAGTTTT 59.896 41.667 21.47 0.00 0.00 2.43
2095 2178 7.365497 TCAGTCTAGAATTAATCATCCTGCA 57.635 36.000 0.00 0.00 0.00 4.41
2162 2558 2.867109 AATCATATCCTCCAAGGGCG 57.133 50.000 0.00 0.00 35.59 6.13
2175 2571 1.613437 CAAGGGCGTGATCTTGGTTTT 59.387 47.619 0.00 0.00 37.35 2.43
2182 2578 4.453136 GGCGTGATCTTGGTTTTAGTACAA 59.547 41.667 0.00 0.00 0.00 2.41
2260 2656 7.764443 GTCATCTACTCAGCAACCAAATAACTA 59.236 37.037 0.00 0.00 0.00 2.24
2319 2716 0.940126 GCATGCCTGTCTTCATACCG 59.060 55.000 6.36 0.00 0.00 4.02
2366 2763 6.314784 CAGTCCAATTGAATAACCGAAACTC 58.685 40.000 7.12 0.00 0.00 3.01
2508 2906 2.601666 AGGACGACCTGAGCAGCA 60.602 61.111 5.39 0.00 45.92 4.41
2509 2907 2.210013 AGGACGACCTGAGCAGCAA 61.210 57.895 5.39 0.00 45.92 3.91
2623 3021 1.271379 GCAGGAAGACAAGTAGGCCAA 60.271 52.381 5.01 0.00 0.00 4.52
2700 3098 4.724399 TGCTACCTTCAATTTCCTTGTGA 58.276 39.130 0.00 0.00 36.20 3.58
2878 3282 1.526575 ATGGCCAAGGTGCGAAAGTG 61.527 55.000 10.96 0.00 0.00 3.16
2890 3294 3.542310 GTGCGAAAGTGACAAAGTTTGAC 59.458 43.478 22.23 16.11 31.28 3.18
2891 3295 3.189495 TGCGAAAGTGACAAAGTTTGACA 59.811 39.130 22.23 18.55 31.28 3.58
3036 3440 4.479158 TGTCCCCATTATCCATTAAAGGC 58.521 43.478 0.00 0.00 29.02 4.35
3144 3548 4.835615 GGTATCTCTGGTATGTCCATGTCT 59.164 45.833 0.00 0.00 46.12 3.41
3420 3824 0.306840 CGCCGAAGCTATAGACGTCA 59.693 55.000 19.50 4.13 36.60 4.35
3456 3860 0.384477 GTCCATAGAGCGCGTACTCG 60.384 60.000 8.43 0.00 41.77 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.447140 GCATGTAGGTCGGACGCAA 60.447 57.895 1.43 0.00 0.00 4.85
1 2 2.183300 GCATGTAGGTCGGACGCA 59.817 61.111 1.43 1.88 0.00 5.24
2 3 2.679132 ATCGCATGTAGGTCGGACGC 62.679 60.000 1.43 0.00 0.00 5.19
3 4 0.248907 AATCGCATGTAGGTCGGACG 60.249 55.000 1.43 0.00 0.00 4.79
4 5 1.935933 AAATCGCATGTAGGTCGGAC 58.064 50.000 0.00 0.00 0.00 4.79
5 6 2.167693 AGAAAATCGCATGTAGGTCGGA 59.832 45.455 0.00 0.00 0.00 4.55
6 7 2.285220 CAGAAAATCGCATGTAGGTCGG 59.715 50.000 0.00 0.00 0.00 4.79
7 8 3.186909 TCAGAAAATCGCATGTAGGTCG 58.813 45.455 0.00 0.00 0.00 4.79
8 9 6.844696 TTATCAGAAAATCGCATGTAGGTC 57.155 37.500 0.00 0.00 0.00 3.85
9 10 7.624360 TTTTATCAGAAAATCGCATGTAGGT 57.376 32.000 0.00 0.00 0.00 3.08
10 11 8.344831 TCATTTTATCAGAAAATCGCATGTAGG 58.655 33.333 0.00 0.00 0.00 3.18
11 12 9.888878 ATCATTTTATCAGAAAATCGCATGTAG 57.111 29.630 0.00 0.00 0.00 2.74
13 14 9.669353 GTATCATTTTATCAGAAAATCGCATGT 57.331 29.630 0.00 0.00 0.00 3.21
14 15 8.834212 CGTATCATTTTATCAGAAAATCGCATG 58.166 33.333 0.00 0.00 0.00 4.06
15 16 8.773645 TCGTATCATTTTATCAGAAAATCGCAT 58.226 29.630 0.00 0.00 0.00 4.73
16 17 8.137210 TCGTATCATTTTATCAGAAAATCGCA 57.863 30.769 0.00 0.00 0.00 5.10
17 18 9.599322 AATCGTATCATTTTATCAGAAAATCGC 57.401 29.630 0.00 0.00 0.00 4.58
37 38 8.559536 GCAAGGATCATTTATCAGAAAATCGTA 58.440 33.333 0.00 0.00 36.20 3.43
38 39 7.284034 AGCAAGGATCATTTATCAGAAAATCGT 59.716 33.333 0.00 0.00 36.20 3.73
39 40 7.646314 AGCAAGGATCATTTATCAGAAAATCG 58.354 34.615 0.00 0.00 36.20 3.34
40 41 8.627403 TGAGCAAGGATCATTTATCAGAAAATC 58.373 33.333 0.00 0.00 36.20 2.17
41 42 8.529424 TGAGCAAGGATCATTTATCAGAAAAT 57.471 30.769 0.00 0.00 36.20 1.82
42 43 7.943079 TGAGCAAGGATCATTTATCAGAAAA 57.057 32.000 0.00 0.00 36.20 2.29
43 44 7.613022 ACTTGAGCAAGGATCATTTATCAGAAA 59.387 33.333 14.14 0.00 42.53 2.52
44 45 7.114754 ACTTGAGCAAGGATCATTTATCAGAA 58.885 34.615 14.14 0.00 42.53 3.02
45 46 6.656902 ACTTGAGCAAGGATCATTTATCAGA 58.343 36.000 14.14 0.00 42.53 3.27
46 47 6.939132 ACTTGAGCAAGGATCATTTATCAG 57.061 37.500 14.14 0.00 42.53 2.90
47 48 7.337938 TGTACTTGAGCAAGGATCATTTATCA 58.662 34.615 14.14 0.00 42.53 2.15
48 49 7.792374 TGTACTTGAGCAAGGATCATTTATC 57.208 36.000 14.14 0.00 42.53 1.75
49 50 8.757982 ATTGTACTTGAGCAAGGATCATTTAT 57.242 30.769 14.14 0.00 42.53 1.40
50 51 8.579850 AATTGTACTTGAGCAAGGATCATTTA 57.420 30.769 14.14 0.00 42.53 1.40
51 52 7.472334 AATTGTACTTGAGCAAGGATCATTT 57.528 32.000 14.14 9.26 42.53 2.32
52 53 7.472334 AAATTGTACTTGAGCAAGGATCATT 57.528 32.000 14.14 5.90 42.53 2.57
53 54 6.183360 CGAAATTGTACTTGAGCAAGGATCAT 60.183 38.462 14.14 0.35 42.53 2.45
54 55 5.122239 CGAAATTGTACTTGAGCAAGGATCA 59.878 40.000 14.14 7.43 42.53 2.92
55 56 5.122396 ACGAAATTGTACTTGAGCAAGGATC 59.878 40.000 14.14 0.00 42.53 3.36
56 57 5.003804 ACGAAATTGTACTTGAGCAAGGAT 58.996 37.500 14.14 0.00 42.53 3.24
57 58 4.385825 ACGAAATTGTACTTGAGCAAGGA 58.614 39.130 14.14 3.03 42.53 3.36
58 59 4.666655 CGACGAAATTGTACTTGAGCAAGG 60.667 45.833 14.14 0.00 42.53 3.61
59 60 4.386230 CGACGAAATTGTACTTGAGCAAG 58.614 43.478 8.60 8.60 43.79 4.01
60 61 3.363575 GCGACGAAATTGTACTTGAGCAA 60.364 43.478 0.00 0.00 0.00 3.91
61 62 2.156891 GCGACGAAATTGTACTTGAGCA 59.843 45.455 0.00 0.00 0.00 4.26
62 63 2.156891 TGCGACGAAATTGTACTTGAGC 59.843 45.455 0.00 0.00 0.00 4.26
63 64 3.183574 TGTGCGACGAAATTGTACTTGAG 59.816 43.478 0.00 0.00 0.00 3.02
64 65 3.124560 TGTGCGACGAAATTGTACTTGA 58.875 40.909 0.00 0.00 0.00 3.02
65 66 3.513462 TGTGCGACGAAATTGTACTTG 57.487 42.857 0.00 0.00 0.00 3.16
66 67 3.606153 GCTTGTGCGACGAAATTGTACTT 60.606 43.478 0.00 0.00 0.00 2.24
67 68 2.096417 GCTTGTGCGACGAAATTGTACT 60.096 45.455 0.00 0.00 0.00 2.73
68 69 2.230864 GCTTGTGCGACGAAATTGTAC 58.769 47.619 0.00 0.00 0.00 2.90
69 70 1.867865 TGCTTGTGCGACGAAATTGTA 59.132 42.857 0.00 0.00 43.34 2.41
70 71 0.660488 TGCTTGTGCGACGAAATTGT 59.340 45.000 0.00 0.00 43.34 2.71
71 72 1.906966 GATGCTTGTGCGACGAAATTG 59.093 47.619 0.00 0.00 43.34 2.32
72 73 1.464023 CGATGCTTGTGCGACGAAATT 60.464 47.619 0.00 0.00 43.34 1.82
73 74 0.095245 CGATGCTTGTGCGACGAAAT 59.905 50.000 0.00 0.00 43.34 2.17
74 75 1.218875 ACGATGCTTGTGCGACGAAA 61.219 50.000 0.00 0.00 43.34 3.46
75 76 0.387494 TACGATGCTTGTGCGACGAA 60.387 50.000 0.00 0.00 43.34 3.85
76 77 0.179148 ATACGATGCTTGTGCGACGA 60.179 50.000 0.00 0.00 43.34 4.20
77 78 0.645355 AATACGATGCTTGTGCGACG 59.355 50.000 0.00 0.00 43.34 5.12
78 79 3.918258 TTAATACGATGCTTGTGCGAC 57.082 42.857 0.00 0.00 43.34 5.19
79 80 4.930463 TTTTAATACGATGCTTGTGCGA 57.070 36.364 0.00 0.00 43.34 5.10
80 81 6.033407 ACAATTTTTAATACGATGCTTGTGCG 59.967 34.615 0.00 0.00 43.34 5.34
81 82 7.276953 ACAATTTTTAATACGATGCTTGTGC 57.723 32.000 0.00 0.00 40.20 4.57
82 83 7.253288 CCGACAATTTTTAATACGATGCTTGTG 60.253 37.037 0.00 0.00 0.00 3.33
83 84 6.745450 CCGACAATTTTTAATACGATGCTTGT 59.255 34.615 0.00 0.00 0.00 3.16
84 85 6.964370 TCCGACAATTTTTAATACGATGCTTG 59.036 34.615 0.00 0.00 0.00 4.01
85 86 6.964934 GTCCGACAATTTTTAATACGATGCTT 59.035 34.615 0.00 0.00 0.00 3.91
86 87 6.483687 GTCCGACAATTTTTAATACGATGCT 58.516 36.000 0.00 0.00 0.00 3.79
87 88 5.391433 CGTCCGACAATTTTTAATACGATGC 59.609 40.000 0.00 0.00 0.00 3.91
88 89 6.406896 CACGTCCGACAATTTTTAATACGATG 59.593 38.462 0.00 0.00 0.00 3.84
89 90 6.091169 ACACGTCCGACAATTTTTAATACGAT 59.909 34.615 0.00 0.00 0.00 3.73
90 91 5.404968 ACACGTCCGACAATTTTTAATACGA 59.595 36.000 0.00 0.00 0.00 3.43
91 92 5.610975 ACACGTCCGACAATTTTTAATACG 58.389 37.500 0.00 0.00 0.00 3.06
92 93 6.679919 GCTACACGTCCGACAATTTTTAATAC 59.320 38.462 0.00 0.00 0.00 1.89
93 94 6.368243 TGCTACACGTCCGACAATTTTTAATA 59.632 34.615 0.00 0.00 0.00 0.98
94 95 5.179742 TGCTACACGTCCGACAATTTTTAAT 59.820 36.000 0.00 0.00 0.00 1.40
95 96 4.510711 TGCTACACGTCCGACAATTTTTAA 59.489 37.500 0.00 0.00 0.00 1.52
96 97 4.056740 TGCTACACGTCCGACAATTTTTA 58.943 39.130 0.00 0.00 0.00 1.52
97 98 2.873472 TGCTACACGTCCGACAATTTTT 59.127 40.909 0.00 0.00 0.00 1.94
98 99 2.222445 GTGCTACACGTCCGACAATTTT 59.778 45.455 0.00 0.00 0.00 1.82
99 100 1.796459 GTGCTACACGTCCGACAATTT 59.204 47.619 0.00 0.00 0.00 1.82
100 101 1.269883 TGTGCTACACGTCCGACAATT 60.270 47.619 0.00 0.00 37.14 2.32
101 102 0.315886 TGTGCTACACGTCCGACAAT 59.684 50.000 0.00 0.00 37.14 2.71
102 103 0.595567 GTGTGCTACACGTCCGACAA 60.596 55.000 0.00 0.00 39.53 3.18
103 104 1.008194 GTGTGCTACACGTCCGACA 60.008 57.895 0.00 0.00 39.53 4.35
104 105 3.838468 GTGTGCTACACGTCCGAC 58.162 61.111 4.12 0.00 39.53 4.79
116 117 0.250295 TGGGAGCAGTGTTAGTGTGC 60.250 55.000 0.00 0.00 37.48 4.57
117 118 1.202639 TGTGGGAGCAGTGTTAGTGTG 60.203 52.381 0.00 0.00 0.00 3.82
118 119 1.128200 TGTGGGAGCAGTGTTAGTGT 58.872 50.000 0.00 0.00 0.00 3.55
119 120 2.146342 CTTGTGGGAGCAGTGTTAGTG 58.854 52.381 0.00 0.00 0.00 2.74
120 121 2.047061 TCTTGTGGGAGCAGTGTTAGT 58.953 47.619 0.00 0.00 0.00 2.24
121 122 2.839486 TCTTGTGGGAGCAGTGTTAG 57.161 50.000 0.00 0.00 0.00 2.34
122 123 3.788227 AATCTTGTGGGAGCAGTGTTA 57.212 42.857 0.00 0.00 0.00 2.41
123 124 2.664402 AATCTTGTGGGAGCAGTGTT 57.336 45.000 0.00 0.00 0.00 3.32
124 125 2.639839 AGTAATCTTGTGGGAGCAGTGT 59.360 45.455 0.00 0.00 0.00 3.55
125 126 3.005554 CAGTAATCTTGTGGGAGCAGTG 58.994 50.000 0.00 0.00 0.00 3.66
126 127 2.616510 GCAGTAATCTTGTGGGAGCAGT 60.617 50.000 0.00 0.00 0.00 4.40
127 128 2.012673 GCAGTAATCTTGTGGGAGCAG 58.987 52.381 0.00 0.00 0.00 4.24
128 129 1.340017 GGCAGTAATCTTGTGGGAGCA 60.340 52.381 0.00 0.00 0.00 4.26
129 130 1.340017 TGGCAGTAATCTTGTGGGAGC 60.340 52.381 0.00 0.00 0.00 4.70
130 131 2.787473 TGGCAGTAATCTTGTGGGAG 57.213 50.000 0.00 0.00 0.00 4.30
131 132 2.290896 CCTTGGCAGTAATCTTGTGGGA 60.291 50.000 0.00 0.00 0.00 4.37
132 133 2.094675 CCTTGGCAGTAATCTTGTGGG 58.905 52.381 0.00 0.00 0.00 4.61
133 134 2.749621 GTCCTTGGCAGTAATCTTGTGG 59.250 50.000 0.00 0.00 0.00 4.17
134 135 2.749621 GGTCCTTGGCAGTAATCTTGTG 59.250 50.000 0.00 0.00 0.00 3.33
135 136 2.375174 TGGTCCTTGGCAGTAATCTTGT 59.625 45.455 0.00 0.00 0.00 3.16
136 137 3.071874 TGGTCCTTGGCAGTAATCTTG 57.928 47.619 0.00 0.00 0.00 3.02
137 138 3.266772 TCATGGTCCTTGGCAGTAATCTT 59.733 43.478 4.99 0.00 0.00 2.40
138 139 2.846206 TCATGGTCCTTGGCAGTAATCT 59.154 45.455 4.99 0.00 0.00 2.40
139 140 3.209410 CTCATGGTCCTTGGCAGTAATC 58.791 50.000 4.99 0.00 0.00 1.75
140 141 2.092212 CCTCATGGTCCTTGGCAGTAAT 60.092 50.000 4.99 0.00 0.00 1.89
141 142 1.281867 CCTCATGGTCCTTGGCAGTAA 59.718 52.381 4.99 0.00 0.00 2.24
142 143 0.911769 CCTCATGGTCCTTGGCAGTA 59.088 55.000 4.99 0.00 0.00 2.74
143 144 1.136329 ACCTCATGGTCCTTGGCAGT 61.136 55.000 4.99 0.00 44.78 4.40
144 145 0.911769 TACCTCATGGTCCTTGGCAG 59.088 55.000 4.99 0.00 44.78 4.85
145 146 1.595311 ATACCTCATGGTCCTTGGCA 58.405 50.000 4.99 0.00 44.78 4.92
146 147 3.073062 ACATATACCTCATGGTCCTTGGC 59.927 47.826 4.99 0.00 44.78 4.52
147 148 4.505566 CCACATATACCTCATGGTCCTTGG 60.506 50.000 4.99 0.00 44.78 3.61
148 149 4.103153 ACCACATATACCTCATGGTCCTTG 59.897 45.833 0.00 0.00 44.78 3.61
149 150 4.307259 ACCACATATACCTCATGGTCCTT 58.693 43.478 0.00 0.00 44.78 3.36
150 151 3.941629 ACCACATATACCTCATGGTCCT 58.058 45.455 0.00 0.00 44.78 3.85
151 152 5.794894 CTTACCACATATACCTCATGGTCC 58.205 45.833 0.00 0.00 44.78 4.46
152 153 5.221641 TGCTTACCACATATACCTCATGGTC 60.222 44.000 0.00 0.00 44.78 4.02
154 155 5.227569 TGCTTACCACATATACCTCATGG 57.772 43.478 0.00 0.00 39.83 3.66
155 156 7.566760 TTTTGCTTACCACATATACCTCATG 57.433 36.000 0.00 0.00 0.00 3.07
156 157 8.220559 AGATTTTGCTTACCACATATACCTCAT 58.779 33.333 0.00 0.00 0.00 2.90
157 158 7.573710 AGATTTTGCTTACCACATATACCTCA 58.426 34.615 0.00 0.00 0.00 3.86
158 159 9.726438 ATAGATTTTGCTTACCACATATACCTC 57.274 33.333 0.00 0.00 0.00 3.85
159 160 9.507329 CATAGATTTTGCTTACCACATATACCT 57.493 33.333 0.00 0.00 0.00 3.08
160 161 9.502091 TCATAGATTTTGCTTACCACATATACC 57.498 33.333 0.00 0.00 0.00 2.73
197 198 9.686683 AGTAAAGCTAACAACCTAAATCATCAT 57.313 29.630 0.00 0.00 0.00 2.45
198 199 9.515226 AAGTAAAGCTAACAACCTAAATCATCA 57.485 29.630 0.00 0.00 0.00 3.07
201 202 9.959749 CAAAAGTAAAGCTAACAACCTAAATCA 57.040 29.630 0.00 0.00 0.00 2.57
204 205 9.181061 ACTCAAAAGTAAAGCTAACAACCTAAA 57.819 29.630 0.00 0.00 32.59 1.85
205 206 8.741603 ACTCAAAAGTAAAGCTAACAACCTAA 57.258 30.769 0.00 0.00 32.59 2.69
206 207 8.741603 AACTCAAAAGTAAAGCTAACAACCTA 57.258 30.769 0.00 0.00 33.48 3.08
207 208 7.640597 AACTCAAAAGTAAAGCTAACAACCT 57.359 32.000 0.00 0.00 33.48 3.50
208 209 8.592155 CAAAACTCAAAAGTAAAGCTAACAACC 58.408 33.333 0.00 0.00 33.48 3.77
209 210 9.349145 TCAAAACTCAAAAGTAAAGCTAACAAC 57.651 29.630 0.00 0.00 33.48 3.32
210 211 9.915629 TTCAAAACTCAAAAGTAAAGCTAACAA 57.084 25.926 0.00 0.00 33.48 2.83
211 212 9.915629 TTTCAAAACTCAAAAGTAAAGCTAACA 57.084 25.926 0.00 0.00 33.48 2.41
225 226 9.781834 CACAAGTATGTACTTTTCAAAACTCAA 57.218 29.630 2.77 0.00 43.57 3.02
226 227 8.402472 CCACAAGTATGTACTTTTCAAAACTCA 58.598 33.333 2.77 0.00 43.57 3.41
227 228 8.403236 ACCACAAGTATGTACTTTTCAAAACTC 58.597 33.333 2.77 0.00 43.57 3.01
228 229 8.188139 CACCACAAGTATGTACTTTTCAAAACT 58.812 33.333 2.77 0.00 43.57 2.66
229 230 7.971722 ACACCACAAGTATGTACTTTTCAAAAC 59.028 33.333 2.77 0.00 43.57 2.43
230 231 8.057536 ACACCACAAGTATGTACTTTTCAAAA 57.942 30.769 2.77 0.00 43.57 2.44
231 232 7.633193 ACACCACAAGTATGTACTTTTCAAA 57.367 32.000 2.77 0.00 43.57 2.69
232 233 7.554835 AGAACACCACAAGTATGTACTTTTCAA 59.445 33.333 2.77 0.00 43.57 2.69
233 234 7.051623 AGAACACCACAAGTATGTACTTTTCA 58.948 34.615 2.77 0.00 43.57 2.69
234 235 7.492352 AGAACACCACAAGTATGTACTTTTC 57.508 36.000 2.77 4.30 43.57 2.29
235 236 7.875327 AAGAACACCACAAGTATGTACTTTT 57.125 32.000 2.77 0.00 43.57 2.27
236 237 7.338449 ACAAAGAACACCACAAGTATGTACTTT 59.662 33.333 2.77 0.00 43.57 2.66
237 238 6.826741 ACAAAGAACACCACAAGTATGTACTT 59.173 34.615 0.00 0.00 46.76 2.24
238 239 6.354130 ACAAAGAACACCACAAGTATGTACT 58.646 36.000 0.00 0.00 37.82 2.73
239 240 6.613755 ACAAAGAACACCACAAGTATGTAC 57.386 37.500 0.00 0.00 37.82 2.90
240 241 7.502696 AGTACAAAGAACACCACAAGTATGTA 58.497 34.615 0.00 0.00 37.82 2.29
241 242 6.354130 AGTACAAAGAACACCACAAGTATGT 58.646 36.000 0.00 0.00 41.61 2.29
242 243 6.861065 AGTACAAAGAACACCACAAGTATG 57.139 37.500 0.00 0.00 0.00 2.39
243 244 8.208903 AGTTAGTACAAAGAACACCACAAGTAT 58.791 33.333 0.00 0.00 0.00 2.12
244 245 7.558604 AGTTAGTACAAAGAACACCACAAGTA 58.441 34.615 0.00 0.00 0.00 2.24
245 246 6.412214 AGTTAGTACAAAGAACACCACAAGT 58.588 36.000 0.00 0.00 0.00 3.16
246 247 6.920569 AGTTAGTACAAAGAACACCACAAG 57.079 37.500 0.00 0.00 0.00 3.16
247 248 6.879993 TCAAGTTAGTACAAAGAACACCACAA 59.120 34.615 0.00 0.00 0.00 3.33
248 249 6.314400 GTCAAGTTAGTACAAAGAACACCACA 59.686 38.462 0.00 0.00 0.00 4.17
249 250 6.314400 TGTCAAGTTAGTACAAAGAACACCAC 59.686 38.462 0.00 0.00 0.00 4.16
250 251 6.408035 TGTCAAGTTAGTACAAAGAACACCA 58.592 36.000 0.00 0.00 0.00 4.17
251 252 6.537660 ACTGTCAAGTTAGTACAAAGAACACC 59.462 38.462 0.00 0.00 30.14 4.16
252 253 7.535489 ACTGTCAAGTTAGTACAAAGAACAC 57.465 36.000 0.00 0.00 30.14 3.32
253 254 7.820386 TCAACTGTCAAGTTAGTACAAAGAACA 59.180 33.333 0.00 0.00 45.07 3.18
254 255 8.193250 TCAACTGTCAAGTTAGTACAAAGAAC 57.807 34.615 0.00 0.00 45.07 3.01
255 256 8.958119 ATCAACTGTCAAGTTAGTACAAAGAA 57.042 30.769 0.00 0.00 45.07 2.52
256 257 8.201464 TGATCAACTGTCAAGTTAGTACAAAGA 58.799 33.333 0.00 0.00 45.07 2.52
257 258 8.365399 TGATCAACTGTCAAGTTAGTACAAAG 57.635 34.615 0.00 0.00 45.07 2.77
258 259 8.725405 TTGATCAACTGTCAAGTTAGTACAAA 57.275 30.769 3.38 0.00 45.07 2.83
259 260 8.902540 ATTGATCAACTGTCAAGTTAGTACAA 57.097 30.769 11.07 0.00 45.07 2.41
260 261 9.639601 CTATTGATCAACTGTCAAGTTAGTACA 57.360 33.333 11.07 0.00 45.07 2.90
261 262 9.856488 TCTATTGATCAACTGTCAAGTTAGTAC 57.144 33.333 11.07 0.00 45.07 2.73
263 264 9.950496 ATTCTATTGATCAACTGTCAAGTTAGT 57.050 29.630 11.07 0.00 45.07 2.24
265 266 9.166173 CCATTCTATTGATCAACTGTCAAGTTA 57.834 33.333 11.07 0.00 45.07 2.24
267 268 7.397221 TCCATTCTATTGATCAACTGTCAAGT 58.603 34.615 11.07 0.00 38.81 3.16
268 269 7.854557 TCCATTCTATTGATCAACTGTCAAG 57.145 36.000 11.07 2.31 38.81 3.02
269 270 7.884877 ACTTCCATTCTATTGATCAACTGTCAA 59.115 33.333 11.07 0.18 39.65 3.18
270 271 7.397221 ACTTCCATTCTATTGATCAACTGTCA 58.603 34.615 11.07 0.00 0.00 3.58
271 272 7.856145 ACTTCCATTCTATTGATCAACTGTC 57.144 36.000 11.07 0.00 0.00 3.51
272 273 9.911788 ATAACTTCCATTCTATTGATCAACTGT 57.088 29.630 11.07 0.00 0.00 3.55
274 275 9.566432 GGATAACTTCCATTCTATTGATCAACT 57.434 33.333 11.07 3.09 44.74 3.16
308 309 6.011981 TGGAGGGTGGATTATGTACTCTTTTT 60.012 38.462 0.00 0.00 0.00 1.94
309 310 5.491078 TGGAGGGTGGATTATGTACTCTTTT 59.509 40.000 0.00 0.00 0.00 2.27
310 311 5.036916 TGGAGGGTGGATTATGTACTCTTT 58.963 41.667 0.00 0.00 0.00 2.52
311 312 4.631234 TGGAGGGTGGATTATGTACTCTT 58.369 43.478 0.00 0.00 0.00 2.85
312 313 4.280789 TGGAGGGTGGATTATGTACTCT 57.719 45.455 0.00 0.00 0.00 3.24
313 314 5.367945 TTTGGAGGGTGGATTATGTACTC 57.632 43.478 0.00 0.00 0.00 2.59
314 315 5.789574 TTTTGGAGGGTGGATTATGTACT 57.210 39.130 0.00 0.00 0.00 2.73
315 316 5.712917 TGTTTTTGGAGGGTGGATTATGTAC 59.287 40.000 0.00 0.00 0.00 2.90
316 317 5.893500 TGTTTTTGGAGGGTGGATTATGTA 58.106 37.500 0.00 0.00 0.00 2.29
317 318 4.746466 TGTTTTTGGAGGGTGGATTATGT 58.254 39.130 0.00 0.00 0.00 2.29
318 319 5.245977 ACTTGTTTTTGGAGGGTGGATTATG 59.754 40.000 0.00 0.00 0.00 1.90
319 320 5.402630 ACTTGTTTTTGGAGGGTGGATTAT 58.597 37.500 0.00 0.00 0.00 1.28
320 321 4.810345 ACTTGTTTTTGGAGGGTGGATTA 58.190 39.130 0.00 0.00 0.00 1.75
321 322 3.653164 ACTTGTTTTTGGAGGGTGGATT 58.347 40.909 0.00 0.00 0.00 3.01
322 323 3.328535 ACTTGTTTTTGGAGGGTGGAT 57.671 42.857 0.00 0.00 0.00 3.41
323 324 2.838637 ACTTGTTTTTGGAGGGTGGA 57.161 45.000 0.00 0.00 0.00 4.02
324 325 3.562182 AGTACTTGTTTTTGGAGGGTGG 58.438 45.455 0.00 0.00 0.00 4.61
325 326 3.568430 GGAGTACTTGTTTTTGGAGGGTG 59.432 47.826 0.00 0.00 0.00 4.61
326 327 3.436035 GGGAGTACTTGTTTTTGGAGGGT 60.436 47.826 0.00 0.00 0.00 4.34
327 328 3.154710 GGGAGTACTTGTTTTTGGAGGG 58.845 50.000 0.00 0.00 0.00 4.30
328 329 4.072839 GAGGGAGTACTTGTTTTTGGAGG 58.927 47.826 0.00 0.00 0.00 4.30
329 330 4.072839 GGAGGGAGTACTTGTTTTTGGAG 58.927 47.826 0.00 0.00 0.00 3.86
330 331 3.495453 CGGAGGGAGTACTTGTTTTTGGA 60.495 47.826 0.00 0.00 0.00 3.53
331 332 2.812011 CGGAGGGAGTACTTGTTTTTGG 59.188 50.000 0.00 0.00 0.00 3.28
332 333 3.473625 ACGGAGGGAGTACTTGTTTTTG 58.526 45.455 0.00 0.00 0.00 2.44
333 334 3.495629 GGACGGAGGGAGTACTTGTTTTT 60.496 47.826 0.00 0.00 0.00 1.94
334 335 2.038164 GGACGGAGGGAGTACTTGTTTT 59.962 50.000 0.00 0.00 0.00 2.43
335 336 1.622312 GGACGGAGGGAGTACTTGTTT 59.378 52.381 0.00 0.00 0.00 2.83
336 337 1.264295 GGACGGAGGGAGTACTTGTT 58.736 55.000 0.00 0.00 0.00 2.83
337 338 0.964358 CGGACGGAGGGAGTACTTGT 60.964 60.000 0.00 0.00 0.00 3.16
338 339 1.664321 CCGGACGGAGGGAGTACTTG 61.664 65.000 4.40 0.00 37.50 3.16
339 340 1.379576 CCGGACGGAGGGAGTACTT 60.380 63.158 4.40 0.00 37.50 2.24
340 341 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
341 342 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
342 343 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
343 344 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
344 345 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
345 346 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
346 347 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
347 348 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
348 349 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
349 350 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
350 351 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
351 352 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
352 353 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
353 354 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
354 355 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
355 356 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
362 363 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
363 364 9.880157 ATCCCTTTTATTCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
364 365 9.656040 CATCCCTTTTATTCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
365 366 8.814931 ACATCCCTTTTATTCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
405 406 9.886132 GACAAAAAGGGATGTATCTAGAACTAA 57.114 33.333 0.00 0.00 0.00 2.24
406 407 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
407 408 7.037586 TGGACAAAAAGGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 0.00 3.01
408 409 7.110155 TGGACAAAAAGGGATGTATCTAGAAC 58.890 38.462 0.00 0.00 0.00 3.01
409 410 7.265599 TGGACAAAAAGGGATGTATCTAGAA 57.734 36.000 0.00 0.00 0.00 2.10
410 411 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
411 412 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
412 413 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
413 414 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
414 415 7.610865 TCAAAATGGACAAAAAGGGATGTATC 58.389 34.615 0.00 0.00 0.00 2.24
415 416 7.552050 TCAAAATGGACAAAAAGGGATGTAT 57.448 32.000 0.00 0.00 0.00 2.29
416 417 6.985653 TCAAAATGGACAAAAAGGGATGTA 57.014 33.333 0.00 0.00 0.00 2.29
417 418 5.885449 TCAAAATGGACAAAAAGGGATGT 57.115 34.783 0.00 0.00 0.00 3.06
418 419 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
419 420 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
420 421 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
421 422 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
422 423 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
423 424 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
424 425 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
425 426 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
426 427 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
427 428 9.829507 AAAAATACTTGTCATCAAAATGGACAA 57.170 25.926 0.00 0.00 34.59 3.18
428 429 9.258826 CAAAAATACTTGTCATCAAAATGGACA 57.741 29.630 0.00 0.00 33.42 4.02
429 430 8.711457 CCAAAAATACTTGTCATCAAAATGGAC 58.289 33.333 0.00 0.00 33.42 4.02
430 431 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
431 432 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
432 433 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
433 434 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
434 435 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
435 436 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
436 437 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
437 438 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
438 439 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
439 440 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
440 441 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
441 442 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
442 443 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
443 444 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
444 445 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
445 446 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
446 447 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
447 448 3.839490 TGTACTCCCTCCGTCCAAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
448 449 2.640826 TGTACTCCCTCCGTCCAAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
449 450 2.048601 TGTACTCCCTCCGTCCAAAAA 58.951 47.619 0.00 0.00 0.00 1.94
450 451 1.719529 TGTACTCCCTCCGTCCAAAA 58.280 50.000 0.00 0.00 0.00 2.44
451 452 1.946984 ATGTACTCCCTCCGTCCAAA 58.053 50.000 0.00 0.00 0.00 3.28
452 453 2.832643 TATGTACTCCCTCCGTCCAA 57.167 50.000 0.00 0.00 0.00 3.53
453 454 2.832643 TTATGTACTCCCTCCGTCCA 57.167 50.000 0.00 0.00 0.00 4.02
454 455 2.561858 GGATTATGTACTCCCTCCGTCC 59.438 54.545 0.00 0.00 0.00 4.79
455 456 3.228453 TGGATTATGTACTCCCTCCGTC 58.772 50.000 0.00 0.00 0.00 4.79
456 457 3.323774 TGGATTATGTACTCCCTCCGT 57.676 47.619 0.00 0.00 0.00 4.69
457 458 3.895656 TCTTGGATTATGTACTCCCTCCG 59.104 47.826 0.00 0.00 0.00 4.63
458 459 5.888982 TTCTTGGATTATGTACTCCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
531 533 9.620259 GTCCTCTCTTCTTTTATTATGGTTCAT 57.380 33.333 0.00 0.00 0.00 2.57
532 534 7.764443 CGTCCTCTCTTCTTTTATTATGGTTCA 59.236 37.037 0.00 0.00 0.00 3.18
605 611 2.170187 CCCCATGTCTCTCTCTTTCCTG 59.830 54.545 0.00 0.00 0.00 3.86
819 834 2.376842 GGGGGAGGATGGGAGGAA 59.623 66.667 0.00 0.00 0.00 3.36
936 955 1.298014 GAGCACCCAAGACCCAGAG 59.702 63.158 0.00 0.00 0.00 3.35
1195 1229 1.305887 GAGGGAGGAACGGGAGGAA 60.306 63.158 0.00 0.00 0.00 3.36
1197 1231 1.758906 GAGAGGGAGGAACGGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
1240 1278 7.467403 CGGTTAAAAAGAAGAAGAAACAGAGCT 60.467 37.037 0.00 0.00 0.00 4.09
1259 1297 1.504359 CAGCTTCGTGACCGGTTAAA 58.496 50.000 9.42 0.00 33.95 1.52
1294 1351 0.106819 GATCCTTGGCAGCCTGACAT 60.107 55.000 14.15 0.00 33.90 3.06
1307 1368 4.468153 GTCTGGTACTTCTCCAAGATCCTT 59.532 45.833 0.00 0.00 34.35 3.36
1340 1401 1.475403 TCTCGTCCCACAGGATCTTC 58.525 55.000 0.00 0.00 46.41 2.87
1406 1467 7.972277 CAGACTCTGAACATTTTTATTGGATGG 59.028 37.037 0.00 0.00 32.44 3.51
1452 1513 1.466167 GCGCTGATGCTCTGAAAAAGA 59.534 47.619 0.00 0.00 36.97 2.52
1473 1534 3.604582 CTTCTTCACCCTGTCAATCTCC 58.395 50.000 0.00 0.00 0.00 3.71
1479 1540 2.368875 GTTCTCCTTCTTCACCCTGTCA 59.631 50.000 0.00 0.00 0.00 3.58
1574 1644 0.317770 CAAACGTTGAAGCGCCACAT 60.318 50.000 2.29 0.00 34.88 3.21
1577 1647 1.069568 CATACAAACGTTGAAGCGCCA 60.070 47.619 2.29 0.00 34.88 5.69
1581 1651 6.090898 AGTCATACTCATACAAACGTTGAAGC 59.909 38.462 0.00 0.00 0.00 3.86
1588 1658 6.415280 GCAGTCTAGTCATACTCATACAAACG 59.585 42.308 0.00 0.00 0.00 3.60
1607 1677 4.827087 CATCAGCCGCCGCAGTCT 62.827 66.667 0.00 0.00 37.52 3.24
1661 1732 4.737177 AGCTCCTTGGGCTGCAGC 62.737 66.667 30.88 30.88 38.73 5.25
1717 1788 1.204146 TACCATCTTGTCCCTGAGGC 58.796 55.000 0.00 0.00 0.00 4.70
1749 1824 3.887716 ACACTTGCAAGCTCTGAATCTTT 59.112 39.130 26.27 0.00 0.00 2.52
1752 1827 3.911661 AACACTTGCAAGCTCTGAATC 57.088 42.857 26.27 0.00 0.00 2.52
1777 1852 8.084073 CAGACAACAATATTCCACAAAACAGAT 58.916 33.333 0.00 0.00 0.00 2.90
1779 1854 7.202526 ACAGACAACAATATTCCACAAAACAG 58.797 34.615 0.00 0.00 0.00 3.16
2127 2210 8.168725 AGGATATGATTATGCTCCATTTCACTT 58.831 33.333 4.44 0.00 31.44 3.16
2162 2558 7.326063 GCAACATTGTACTAAAACCAAGATCAC 59.674 37.037 0.00 0.00 0.00 3.06
2204 2600 4.272018 CAGCCACATTAAGTACTGATCAGC 59.728 45.833 22.83 7.43 36.29 4.26
2260 2656 2.840651 AGCAAGGAACTATGTAGTGGCT 59.159 45.455 0.00 0.00 38.49 4.75
2319 2716 3.437049 GGTAGAGGTGATTCAGTTTGCAC 59.563 47.826 0.00 0.00 0.00 4.57
2366 2763 8.668510 ACCTATGCAGTGAATTCTGTTATTAG 57.331 34.615 7.05 2.32 37.70 1.73
2508 2906 1.767681 GAGCTCCATCTCCCTCATGTT 59.232 52.381 0.87 0.00 0.00 2.71
2509 2907 1.422531 GAGCTCCATCTCCCTCATGT 58.577 55.000 0.87 0.00 0.00 3.21
2623 3021 4.778143 GGCCGTGGCAGGATTCGT 62.778 66.667 13.76 0.00 44.11 3.85
2683 3081 5.535753 AGGTTTCACAAGGAAATTGAAGG 57.464 39.130 0.00 0.00 46.55 3.46
2802 3202 4.980434 GCAGCAATTATACAAGCATCTTGG 59.020 41.667 10.80 0.00 0.00 3.61
2878 3282 4.619973 TGGCATTCATGTCAAACTTTGTC 58.380 39.130 1.44 0.00 39.82 3.18
3036 3440 2.044806 CTTCCCCGGCTATCAGTGGG 62.045 65.000 0.00 0.00 41.56 4.61
3144 3548 0.250234 CGGTGAAGATGCTTGAGGGA 59.750 55.000 0.00 0.00 0.00 4.20
3420 3824 4.963318 TGGACAATTGACAGAGAAGAGT 57.037 40.909 13.59 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.