Multiple sequence alignment - TraesCS1B01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G274700 chr1B 100.000 4105 0 0 1 4105 482163043 482167147 0.000000e+00 7581.0
1 TraesCS1B01G274700 chr1B 91.294 425 34 2 1 422 426868173 426867749 9.890000e-161 577.0
2 TraesCS1B01G274700 chr1D 94.420 2957 98 27 430 3342 360092836 360095769 0.000000e+00 4484.0
3 TraesCS1B01G274700 chr5B 95.106 1410 57 5 984 2383 615201342 615199935 0.000000e+00 2211.0
4 TraesCS1B01G274700 chr5B 93.323 674 23 8 3388 4055 106156477 106157134 0.000000e+00 976.0
5 TraesCS1B01G274700 chr5B 86.916 428 39 10 2909 3322 615199162 615198738 8.040000e-127 464.0
6 TraesCS1B01G274700 chr5B 82.517 143 17 6 783 923 615203545 615203409 7.210000e-23 119.0
7 TraesCS1B01G274700 chr1A 95.327 1391 56 3 990 2371 537356828 537355438 0.000000e+00 2200.0
8 TraesCS1B01G274700 chr1A 91.142 429 35 2 1 427 19976028 19975601 2.750000e-161 579.0
9 TraesCS1B01G274700 chr1A 91.121 214 16 3 2911 3122 537354797 537354585 1.870000e-73 287.0
10 TraesCS1B01G274700 chr1A 86.000 250 23 7 3082 3322 537354583 537354337 1.460000e-64 257.0
11 TraesCS1B01G274700 chr1A 83.394 277 26 5 2449 2706 537355064 537354789 5.300000e-59 239.0
12 TraesCS1B01G274700 chr1A 92.466 146 8 2 677 822 537357072 537356930 5.380000e-49 206.0
13 TraesCS1B01G274700 chr1A 97.727 44 1 0 2396 2439 537355486 537355443 4.400000e-10 76.8
14 TraesCS1B01G274700 chr5D 94.654 1403 69 5 984 2383 496589611 496588212 0.000000e+00 2170.0
15 TraesCS1B01G274700 chr5D 88.084 428 34 10 2909 3322 496587386 496586962 3.690000e-135 492.0
16 TraesCS1B01G274700 chr5A 93.379 1465 71 14 842 2296 620563273 620561825 0.000000e+00 2145.0
17 TraesCS1B01G274700 chr5A 87.059 425 39 11 2909 3322 620561122 620560703 2.230000e-127 466.0
18 TraesCS1B01G274700 chr2A 83.518 813 126 8 982 1789 385906100 385906909 0.000000e+00 752.0
19 TraesCS1B01G274700 chr7B 92.000 425 32 2 1 424 161567831 161568254 2.730000e-166 595.0
20 TraesCS1B01G274700 chr7B 91.395 430 34 2 1 427 79722655 79723084 1.640000e-163 586.0
21 TraesCS1B01G274700 chr7B 90.805 435 35 3 1 430 21681039 21680605 9.890000e-161 577.0
22 TraesCS1B01G274700 chr7B 86.872 358 41 5 2029 2383 421501187 421500833 2.970000e-106 396.0
23 TraesCS1B01G274700 chr7B 85.434 357 46 5 2029 2382 632609558 632609911 2.330000e-97 366.0
24 TraesCS1B01G274700 chr4B 92.000 425 32 2 1 424 55128693 55129116 2.730000e-166 595.0
25 TraesCS1B01G274700 chr2B 92.037 427 29 4 1 424 548604472 548604896 2.730000e-166 595.0
26 TraesCS1B01G274700 chr2B 90.930 430 35 4 1 427 250774741 250774313 3.560000e-160 575.0
27 TraesCS1B01G274700 chr2B 90.741 432 39 1 1 431 620267228 620267659 3.560000e-160 575.0
28 TraesCS1B01G274700 chr3B 82.421 347 39 12 3718 4052 114728370 114728706 2.420000e-72 283.0
29 TraesCS1B01G274700 chr6B 83.607 122 18 2 461 582 227722231 227722112 3.350000e-21 113.0
30 TraesCS1B01G274700 chr7D 93.617 47 1 2 490 536 600975711 600975667 7.360000e-08 69.4
31 TraesCS1B01G274700 chr2D 100.000 30 0 0 648 677 155056695 155056666 5.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G274700 chr1B 482163043 482167147 4104 False 7581.000000 7581 100.000000 1 4105 1 chr1B.!!$F1 4104
1 TraesCS1B01G274700 chr1D 360092836 360095769 2933 False 4484.000000 4484 94.420000 430 3342 1 chr1D.!!$F1 2912
2 TraesCS1B01G274700 chr5B 106156477 106157134 657 False 976.000000 976 93.323000 3388 4055 1 chr5B.!!$F1 667
3 TraesCS1B01G274700 chr5B 615198738 615203545 4807 True 931.333333 2211 88.179667 783 3322 3 chr5B.!!$R1 2539
4 TraesCS1B01G274700 chr1A 537354337 537357072 2735 True 544.300000 2200 91.005833 677 3322 6 chr1A.!!$R2 2645
5 TraesCS1B01G274700 chr5D 496586962 496589611 2649 True 1331.000000 2170 91.369000 984 3322 2 chr5D.!!$R1 2338
6 TraesCS1B01G274700 chr5A 620560703 620563273 2570 True 1305.500000 2145 90.219000 842 3322 2 chr5A.!!$R1 2480
7 TraesCS1B01G274700 chr2A 385906100 385906909 809 False 752.000000 752 83.518000 982 1789 1 chr2A.!!$F1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.042131 AGGGGTGTTATCTCCACGGA 59.958 55.000 0.00 0.00 35.94 4.69 F
296 297 0.464452 GGGGTGTTATCTCCACGGAG 59.536 60.000 6.77 6.77 43.21 4.63 F
466 467 0.605319 GAATGTCACAGCCGGTCCAA 60.605 55.000 1.90 0.00 0.00 3.53 F
910 939 1.982395 GCCAAACCCTAACCCTGCC 60.982 63.158 0.00 0.00 0.00 4.85 F
1761 3816 2.593436 CACCTTGGCCGGTTCGTT 60.593 61.111 1.90 0.00 34.29 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 3174 1.592400 CGAGCCTGTGGACGAAGGTA 61.592 60.000 0.0 0.0 35.86 3.08 R
1989 4044 1.829222 CCGAAGTAGGGGTTGAGCTTA 59.171 52.381 0.0 0.0 0.00 3.09 R
2107 4162 2.025887 AGATGGCAAAGGTTAGGGAGTG 60.026 50.000 0.0 0.0 0.00 3.51 R
2662 5122 2.027192 ACCGAGACAAGTGGCATACAAT 60.027 45.455 0.0 0.0 0.00 2.71 R
3748 6443 0.038159 ACAGGACTGTTACTCTGCGC 60.038 55.000 0.0 0.0 41.83 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.168291 GGAGAAGCCGGAGCCCAG 62.168 72.222 5.05 0.00 41.25 4.45
37 38 3.077556 GAGAAGCCGGAGCCCAGA 61.078 66.667 5.05 0.00 41.25 3.86
38 39 3.080121 AGAAGCCGGAGCCCAGAG 61.080 66.667 5.05 0.00 41.25 3.35
39 40 3.077556 GAAGCCGGAGCCCAGAGA 61.078 66.667 5.05 0.00 41.25 3.10
40 41 3.378399 GAAGCCGGAGCCCAGAGAC 62.378 68.421 5.05 0.00 41.25 3.36
41 42 4.704103 AGCCGGAGCCCAGAGACA 62.704 66.667 5.05 0.00 41.25 3.41
42 43 4.459089 GCCGGAGCCCAGAGACAC 62.459 72.222 5.05 0.00 0.00 3.67
43 44 2.681778 CCGGAGCCCAGAGACACT 60.682 66.667 0.00 0.00 0.00 3.55
44 45 2.575993 CGGAGCCCAGAGACACTG 59.424 66.667 0.00 0.00 45.36 3.66
52 53 3.371021 AGAGACACTGACGGCTGG 58.629 61.111 0.00 0.00 0.00 4.85
53 54 2.262915 GAGACACTGACGGCTGGG 59.737 66.667 0.00 0.00 0.00 4.45
54 55 2.524394 AGACACTGACGGCTGGGT 60.524 61.111 1.13 1.13 31.70 4.51
55 56 2.048127 GACACTGACGGCTGGGTC 60.048 66.667 15.28 15.28 38.86 4.46
56 57 3.591254 GACACTGACGGCTGGGTCC 62.591 68.421 19.20 1.89 39.63 4.46
57 58 3.314331 CACTGACGGCTGGGTCCT 61.314 66.667 0.00 0.00 36.07 3.85
58 59 1.982395 CACTGACGGCTGGGTCCTA 60.982 63.158 0.00 0.00 36.07 2.94
59 60 1.682684 ACTGACGGCTGGGTCCTAG 60.683 63.158 0.00 0.00 36.07 3.02
60 61 2.363795 TGACGGCTGGGTCCTAGG 60.364 66.667 0.82 0.82 36.07 3.02
61 62 2.043248 GACGGCTGGGTCCTAGGA 60.043 66.667 7.62 7.62 0.00 2.94
62 63 2.363925 ACGGCTGGGTCCTAGGAC 60.364 66.667 30.72 30.72 43.87 3.85
70 71 4.029472 GTCCTAGGACCAGCCGAA 57.971 61.111 28.87 0.00 43.43 4.30
71 72 2.517609 GTCCTAGGACCAGCCGAAT 58.482 57.895 28.87 0.00 43.43 3.34
72 73 0.831307 GTCCTAGGACCAGCCGAATT 59.169 55.000 28.87 0.00 43.43 2.17
73 74 2.037144 GTCCTAGGACCAGCCGAATTA 58.963 52.381 28.87 0.00 43.43 1.40
74 75 2.037144 TCCTAGGACCAGCCGAATTAC 58.963 52.381 7.62 0.00 43.43 1.89
75 76 1.070289 CCTAGGACCAGCCGAATTACC 59.930 57.143 1.05 0.00 43.43 2.85
76 77 1.760613 CTAGGACCAGCCGAATTACCA 59.239 52.381 0.00 0.00 43.43 3.25
77 78 1.213296 AGGACCAGCCGAATTACCAT 58.787 50.000 0.00 0.00 43.43 3.55
78 79 1.564348 AGGACCAGCCGAATTACCATT 59.436 47.619 0.00 0.00 43.43 3.16
79 80 1.676006 GGACCAGCCGAATTACCATTG 59.324 52.381 0.00 0.00 0.00 2.82
80 81 2.365582 GACCAGCCGAATTACCATTGT 58.634 47.619 0.00 0.00 0.00 2.71
81 82 3.537580 GACCAGCCGAATTACCATTGTA 58.462 45.455 0.00 0.00 0.00 2.41
82 83 3.275999 ACCAGCCGAATTACCATTGTAC 58.724 45.455 0.00 0.00 0.00 2.90
83 84 2.616842 CCAGCCGAATTACCATTGTACC 59.383 50.000 0.00 0.00 0.00 3.34
84 85 2.616842 CAGCCGAATTACCATTGTACCC 59.383 50.000 0.00 0.00 0.00 3.69
85 86 1.951602 GCCGAATTACCATTGTACCCC 59.048 52.381 0.00 0.00 0.00 4.95
86 87 2.422377 GCCGAATTACCATTGTACCCCT 60.422 50.000 0.00 0.00 0.00 4.79
87 88 3.211045 CCGAATTACCATTGTACCCCTG 58.789 50.000 0.00 0.00 0.00 4.45
88 89 3.211045 CGAATTACCATTGTACCCCTGG 58.789 50.000 4.41 4.41 36.09 4.45
89 90 3.562182 GAATTACCATTGTACCCCTGGG 58.438 50.000 5.50 5.50 42.03 4.45
102 103 2.897823 CCCTGGGGATAGGCCTATAT 57.102 55.000 25.49 6.47 36.47 0.86
104 105 4.295905 CCCTGGGGATAGGCCTATATAA 57.704 50.000 25.49 10.47 36.47 0.98
105 106 4.641868 CCCTGGGGATAGGCCTATATAAA 58.358 47.826 25.49 10.82 36.47 1.40
106 107 4.412528 CCCTGGGGATAGGCCTATATAAAC 59.587 50.000 25.49 12.21 36.47 2.01
107 108 4.412528 CCTGGGGATAGGCCTATATAAACC 59.587 50.000 25.49 20.07 36.66 3.27
108 109 4.377134 TGGGGATAGGCCTATATAAACCC 58.623 47.826 27.71 27.71 36.66 4.11
109 110 3.720526 GGGGATAGGCCTATATAAACCCC 59.279 52.174 34.16 34.16 45.89 4.95
110 111 4.642938 GGGATAGGCCTATATAAACCCCT 58.357 47.826 27.01 6.35 36.66 4.79
111 112 5.044451 GGGATAGGCCTATATAAACCCCTT 58.956 45.833 27.01 5.88 36.66 3.95
112 113 6.215031 GGGATAGGCCTATATAAACCCCTTA 58.785 44.000 27.01 1.60 36.66 2.69
113 114 6.329460 GGGATAGGCCTATATAAACCCCTTAG 59.671 46.154 27.01 0.00 36.66 2.18
114 115 6.329460 GGATAGGCCTATATAAACCCCTTAGG 59.671 46.154 25.49 0.00 43.78 2.69
130 131 3.698765 GGGTCACCCATGCAAAGG 58.301 61.111 8.52 3.89 44.65 3.11
137 138 3.912899 CCCATGCAAAGGGTTCAAC 57.087 52.632 17.30 0.00 41.61 3.18
138 139 0.321346 CCCATGCAAAGGGTTCAACC 59.679 55.000 17.30 0.00 41.61 3.77
152 153 5.310720 GGTTCAACCCATTTAGATCACAC 57.689 43.478 0.00 0.00 30.04 3.82
153 154 4.764823 GGTTCAACCCATTTAGATCACACA 59.235 41.667 0.00 0.00 30.04 3.72
154 155 5.335661 GGTTCAACCCATTTAGATCACACAC 60.336 44.000 0.00 0.00 30.04 3.82
155 156 4.979335 TCAACCCATTTAGATCACACACA 58.021 39.130 0.00 0.00 0.00 3.72
156 157 4.759693 TCAACCCATTTAGATCACACACAC 59.240 41.667 0.00 0.00 0.00 3.82
157 158 3.686016 ACCCATTTAGATCACACACACC 58.314 45.455 0.00 0.00 0.00 4.16
158 159 3.016736 CCCATTTAGATCACACACACCC 58.983 50.000 0.00 0.00 0.00 4.61
159 160 3.561097 CCCATTTAGATCACACACACCCA 60.561 47.826 0.00 0.00 0.00 4.51
160 161 4.272489 CCATTTAGATCACACACACCCAT 58.728 43.478 0.00 0.00 0.00 4.00
161 162 5.436175 CCATTTAGATCACACACACCCATA 58.564 41.667 0.00 0.00 0.00 2.74
162 163 5.528690 CCATTTAGATCACACACACCCATAG 59.471 44.000 0.00 0.00 0.00 2.23
163 164 2.698855 AGATCACACACACCCATAGC 57.301 50.000 0.00 0.00 0.00 2.97
164 165 2.191400 AGATCACACACACCCATAGCT 58.809 47.619 0.00 0.00 0.00 3.32
165 166 3.374764 AGATCACACACACCCATAGCTA 58.625 45.455 0.00 0.00 0.00 3.32
166 167 3.774766 AGATCACACACACCCATAGCTAA 59.225 43.478 0.00 0.00 0.00 3.09
167 168 3.610040 TCACACACACCCATAGCTAAG 57.390 47.619 0.00 0.00 0.00 2.18
168 169 2.236146 TCACACACACCCATAGCTAAGG 59.764 50.000 8.09 8.09 0.00 2.69
169 170 2.236146 CACACACACCCATAGCTAAGGA 59.764 50.000 16.64 0.00 0.00 3.36
170 171 2.501723 ACACACACCCATAGCTAAGGAG 59.498 50.000 16.64 11.99 0.00 3.69
171 172 2.766263 CACACACCCATAGCTAAGGAGA 59.234 50.000 16.64 0.00 0.00 3.71
172 173 3.197766 CACACACCCATAGCTAAGGAGAA 59.802 47.826 16.64 0.00 0.00 2.87
173 174 3.452627 ACACACCCATAGCTAAGGAGAAG 59.547 47.826 16.64 10.19 0.00 2.85
174 175 2.436173 ACACCCATAGCTAAGGAGAAGC 59.564 50.000 16.64 0.00 40.40 3.86
175 176 2.435805 CACCCATAGCTAAGGAGAAGCA 59.564 50.000 16.64 0.00 42.62 3.91
176 177 2.703007 ACCCATAGCTAAGGAGAAGCAG 59.297 50.000 16.64 0.41 42.62 4.24
177 178 2.968574 CCCATAGCTAAGGAGAAGCAGA 59.031 50.000 16.64 0.00 42.62 4.26
178 179 3.006752 CCCATAGCTAAGGAGAAGCAGAG 59.993 52.174 16.64 0.00 42.62 3.35
179 180 3.554752 CCATAGCTAAGGAGAAGCAGAGC 60.555 52.174 9.49 0.00 42.62 4.09
180 181 1.864669 AGCTAAGGAGAAGCAGAGCT 58.135 50.000 0.00 0.00 42.62 4.09
181 182 3.025322 AGCTAAGGAGAAGCAGAGCTA 57.975 47.619 0.00 0.00 42.62 3.32
182 183 2.958355 AGCTAAGGAGAAGCAGAGCTAG 59.042 50.000 0.00 0.00 42.62 3.42
183 184 2.545742 GCTAAGGAGAAGCAGAGCTAGC 60.546 54.545 6.62 6.62 38.25 3.42
184 185 1.864669 AAGGAGAAGCAGAGCTAGCT 58.135 50.000 19.45 19.45 45.97 3.32
185 186 1.113788 AGGAGAAGCAGAGCTAGCTG 58.886 55.000 24.99 11.14 42.53 4.24
193 194 1.938625 CAGAGCTAGCTGCCTTCTTC 58.061 55.000 24.99 4.96 44.23 2.87
194 195 0.829990 AGAGCTAGCTGCCTTCTTCC 59.170 55.000 24.99 3.83 44.23 3.46
195 196 0.829990 GAGCTAGCTGCCTTCTTCCT 59.170 55.000 24.99 0.00 44.23 3.36
196 197 0.829990 AGCTAGCTGCCTTCTTCCTC 59.170 55.000 18.57 0.00 44.23 3.71
197 198 0.179059 GCTAGCTGCCTTCTTCCTCC 60.179 60.000 7.70 0.00 35.15 4.30
198 199 1.494960 CTAGCTGCCTTCTTCCTCCT 58.505 55.000 0.00 0.00 0.00 3.69
199 200 1.412343 CTAGCTGCCTTCTTCCTCCTC 59.588 57.143 0.00 0.00 0.00 3.71
200 201 0.252650 AGCTGCCTTCTTCCTCCTCT 60.253 55.000 0.00 0.00 0.00 3.69
201 202 1.007721 AGCTGCCTTCTTCCTCCTCTA 59.992 52.381 0.00 0.00 0.00 2.43
202 203 1.412343 GCTGCCTTCTTCCTCCTCTAG 59.588 57.143 0.00 0.00 0.00 2.43
203 204 1.412343 CTGCCTTCTTCCTCCTCTAGC 59.588 57.143 0.00 0.00 0.00 3.42
204 205 0.756294 GCCTTCTTCCTCCTCTAGCC 59.244 60.000 0.00 0.00 0.00 3.93
205 206 1.419381 CCTTCTTCCTCCTCTAGCCC 58.581 60.000 0.00 0.00 0.00 5.19
206 207 1.036707 CTTCTTCCTCCTCTAGCCCG 58.963 60.000 0.00 0.00 0.00 6.13
207 208 0.629596 TTCTTCCTCCTCTAGCCCGA 59.370 55.000 0.00 0.00 0.00 5.14
208 209 0.629596 TCTTCCTCCTCTAGCCCGAA 59.370 55.000 0.00 0.00 0.00 4.30
209 210 0.747852 CTTCCTCCTCTAGCCCGAAC 59.252 60.000 0.00 0.00 0.00 3.95
210 211 1.035932 TTCCTCCTCTAGCCCGAACG 61.036 60.000 0.00 0.00 0.00 3.95
211 212 2.491022 CCTCCTCTAGCCCGAACGG 61.491 68.421 6.25 6.25 0.00 4.44
220 221 2.125512 CCCGAACGGCTCAAGGAG 60.126 66.667 7.80 0.00 0.00 3.69
240 241 5.415415 GAGCATCCTTGTACTTGCTATTG 57.585 43.478 0.00 0.00 44.98 1.90
241 242 5.102953 AGCATCCTTGTACTTGCTATTGA 57.897 39.130 0.00 0.00 43.28 2.57
242 243 5.688807 AGCATCCTTGTACTTGCTATTGAT 58.311 37.500 0.00 0.00 43.28 2.57
243 244 5.762218 AGCATCCTTGTACTTGCTATTGATC 59.238 40.000 0.00 0.00 43.28 2.92
244 245 5.528690 GCATCCTTGTACTTGCTATTGATCA 59.471 40.000 0.00 0.00 32.41 2.92
245 246 6.206243 GCATCCTTGTACTTGCTATTGATCAT 59.794 38.462 0.00 0.00 32.41 2.45
246 247 7.388776 GCATCCTTGTACTTGCTATTGATCATA 59.611 37.037 0.00 0.00 32.41 2.15
247 248 8.933807 CATCCTTGTACTTGCTATTGATCATAG 58.066 37.037 0.00 2.22 38.41 2.23
248 249 8.023021 TCCTTGTACTTGCTATTGATCATAGT 57.977 34.615 0.00 0.00 37.74 2.12
249 250 7.928167 TCCTTGTACTTGCTATTGATCATAGTG 59.072 37.037 0.00 0.03 37.74 2.74
250 251 7.928167 CCTTGTACTTGCTATTGATCATAGTGA 59.072 37.037 0.00 0.00 37.74 3.41
251 252 9.486497 CTTGTACTTGCTATTGATCATAGTGAT 57.514 33.333 0.00 0.00 40.34 3.06
252 253 8.822652 TGTACTTGCTATTGATCATAGTGATG 57.177 34.615 0.00 0.00 37.20 3.07
253 254 6.798315 ACTTGCTATTGATCATAGTGATGC 57.202 37.500 0.00 0.00 37.20 3.91
254 255 5.407691 ACTTGCTATTGATCATAGTGATGCG 59.592 40.000 0.00 0.00 37.20 4.73
255 256 3.681417 TGCTATTGATCATAGTGATGCGC 59.319 43.478 0.00 0.00 37.20 6.09
256 257 3.681417 GCTATTGATCATAGTGATGCGCA 59.319 43.478 14.96 14.96 37.20 6.09
257 258 4.201695 GCTATTGATCATAGTGATGCGCAG 60.202 45.833 18.32 0.00 37.20 5.18
258 259 3.457610 TTGATCATAGTGATGCGCAGA 57.542 42.857 18.32 5.90 37.20 4.26
259 260 2.747436 TGATCATAGTGATGCGCAGAC 58.253 47.619 18.32 15.31 37.20 3.51
260 261 2.064762 GATCATAGTGATGCGCAGACC 58.935 52.381 18.32 8.32 37.20 3.85
261 262 0.104855 TCATAGTGATGCGCAGACCC 59.895 55.000 18.32 3.83 32.62 4.46
262 263 0.882042 CATAGTGATGCGCAGACCCC 60.882 60.000 18.32 6.18 0.00 4.95
263 264 2.369257 ATAGTGATGCGCAGACCCCG 62.369 60.000 18.32 0.00 0.00 5.73
271 272 3.741476 GCAGACCCCGCAAAGCAG 61.741 66.667 0.00 0.00 0.00 4.24
272 273 3.058160 CAGACCCCGCAAAGCAGG 61.058 66.667 0.00 0.00 0.00 4.85
273 274 3.249189 AGACCCCGCAAAGCAGGA 61.249 61.111 2.47 0.00 0.00 3.86
274 275 2.044946 GACCCCGCAAAGCAGGAT 60.045 61.111 2.47 0.00 0.00 3.24
275 276 1.678970 GACCCCGCAAAGCAGGATT 60.679 57.895 2.47 0.00 0.00 3.01
276 277 0.393808 GACCCCGCAAAGCAGGATTA 60.394 55.000 2.47 0.00 0.00 1.75
277 278 0.394352 ACCCCGCAAAGCAGGATTAG 60.394 55.000 2.47 0.00 0.00 1.73
278 279 1.103398 CCCCGCAAAGCAGGATTAGG 61.103 60.000 0.00 0.00 0.00 2.69
279 280 1.103398 CCCGCAAAGCAGGATTAGGG 61.103 60.000 0.00 0.00 0.00 3.53
280 281 1.103398 CCGCAAAGCAGGATTAGGGG 61.103 60.000 0.00 0.00 0.00 4.79
281 282 0.394352 CGCAAAGCAGGATTAGGGGT 60.394 55.000 0.00 0.00 0.00 4.95
282 283 1.106285 GCAAAGCAGGATTAGGGGTG 58.894 55.000 0.00 0.00 0.00 4.61
283 284 1.616994 GCAAAGCAGGATTAGGGGTGT 60.617 52.381 0.00 0.00 0.00 4.16
284 285 2.807676 CAAAGCAGGATTAGGGGTGTT 58.192 47.619 0.00 0.00 0.00 3.32
285 286 3.876156 GCAAAGCAGGATTAGGGGTGTTA 60.876 47.826 0.00 0.00 0.00 2.41
286 287 4.536765 CAAAGCAGGATTAGGGGTGTTAT 58.463 43.478 0.00 0.00 0.00 1.89
287 288 4.439253 AAGCAGGATTAGGGGTGTTATC 57.561 45.455 0.00 0.00 0.00 1.75
288 289 3.669949 AGCAGGATTAGGGGTGTTATCT 58.330 45.455 0.00 0.00 0.00 1.98
289 290 3.648545 AGCAGGATTAGGGGTGTTATCTC 59.351 47.826 0.00 0.00 0.00 2.75
290 291 3.244596 GCAGGATTAGGGGTGTTATCTCC 60.245 52.174 0.00 0.00 0.00 3.71
291 292 3.973973 CAGGATTAGGGGTGTTATCTCCA 59.026 47.826 0.00 0.00 0.00 3.86
292 293 3.974642 AGGATTAGGGGTGTTATCTCCAC 59.025 47.826 0.00 0.00 0.00 4.02
293 294 3.244112 GGATTAGGGGTGTTATCTCCACG 60.244 52.174 0.00 0.00 35.94 4.94
294 295 1.784358 TAGGGGTGTTATCTCCACGG 58.216 55.000 0.00 0.00 35.94 4.94
295 296 0.042131 AGGGGTGTTATCTCCACGGA 59.958 55.000 0.00 0.00 35.94 4.69
296 297 0.464452 GGGGTGTTATCTCCACGGAG 59.536 60.000 6.77 6.77 43.21 4.63
310 311 3.787001 GGAGAGCCCCGAACCTGG 61.787 72.222 0.00 0.00 0.00 4.45
318 319 1.600638 CCCGAACCTGGGTAAGACC 59.399 63.158 0.00 0.00 44.76 3.85
327 328 3.752339 GGTAAGACCCGGCGTCGT 61.752 66.667 9.28 14.36 46.92 4.34
328 329 2.259511 GTAAGACCCGGCGTCGTT 59.740 61.111 9.28 0.00 46.92 3.85
329 330 1.373371 GTAAGACCCGGCGTCGTTT 60.373 57.895 9.28 8.92 46.92 3.60
330 331 1.373246 TAAGACCCGGCGTCGTTTG 60.373 57.895 9.28 0.00 46.92 2.93
337 338 3.343421 GGCGTCGTTTGCGGTCTT 61.343 61.111 0.00 0.00 38.89 3.01
338 339 2.629763 GCGTCGTTTGCGGTCTTT 59.370 55.556 0.00 0.00 38.89 2.52
339 340 1.438222 GCGTCGTTTGCGGTCTTTC 60.438 57.895 0.00 0.00 38.89 2.62
340 341 1.203313 CGTCGTTTGCGGTCTTTCC 59.797 57.895 0.00 0.00 38.89 3.13
341 342 1.219522 CGTCGTTTGCGGTCTTTCCT 61.220 55.000 0.00 0.00 38.89 3.36
342 343 1.787012 GTCGTTTGCGGTCTTTCCTA 58.213 50.000 0.00 0.00 38.89 2.94
343 344 1.458445 GTCGTTTGCGGTCTTTCCTAC 59.542 52.381 0.00 0.00 38.89 3.18
344 345 1.342174 TCGTTTGCGGTCTTTCCTACT 59.658 47.619 0.00 0.00 38.89 2.57
345 346 1.725164 CGTTTGCGGTCTTTCCTACTC 59.275 52.381 0.00 0.00 0.00 2.59
346 347 2.074576 GTTTGCGGTCTTTCCTACTCC 58.925 52.381 0.00 0.00 0.00 3.85
347 348 0.611714 TTGCGGTCTTTCCTACTCCC 59.388 55.000 0.00 0.00 0.00 4.30
348 349 1.141234 GCGGTCTTTCCTACTCCCG 59.859 63.158 0.00 0.00 38.45 5.14
349 350 1.141234 CGGTCTTTCCTACTCCCGC 59.859 63.158 0.00 0.00 0.00 6.13
350 351 1.321074 CGGTCTTTCCTACTCCCGCT 61.321 60.000 0.00 0.00 0.00 5.52
351 352 0.903236 GGTCTTTCCTACTCCCGCTT 59.097 55.000 0.00 0.00 0.00 4.68
352 353 1.278413 GGTCTTTCCTACTCCCGCTTT 59.722 52.381 0.00 0.00 0.00 3.51
353 354 2.290134 GGTCTTTCCTACTCCCGCTTTT 60.290 50.000 0.00 0.00 0.00 2.27
354 355 3.055602 GGTCTTTCCTACTCCCGCTTTTA 60.056 47.826 0.00 0.00 0.00 1.52
355 356 4.182339 GTCTTTCCTACTCCCGCTTTTAG 58.818 47.826 0.00 0.00 0.00 1.85
356 357 4.081807 GTCTTTCCTACTCCCGCTTTTAGA 60.082 45.833 0.00 0.00 0.00 2.10
357 358 4.159879 TCTTTCCTACTCCCGCTTTTAGAG 59.840 45.833 0.00 0.00 0.00 2.43
367 368 2.882742 GCTTTTAGAGCCTGACAACG 57.117 50.000 0.00 0.00 46.01 4.10
368 369 2.143925 GCTTTTAGAGCCTGACAACGT 58.856 47.619 0.00 0.00 46.01 3.99
369 370 2.548480 GCTTTTAGAGCCTGACAACGTT 59.452 45.455 0.00 0.00 46.01 3.99
370 371 3.364068 GCTTTTAGAGCCTGACAACGTTC 60.364 47.826 0.00 0.00 46.01 3.95
371 372 3.746045 TTTAGAGCCTGACAACGTTCT 57.254 42.857 0.00 0.00 0.00 3.01
372 373 4.859304 TTTAGAGCCTGACAACGTTCTA 57.141 40.909 0.00 0.00 0.00 2.10
373 374 5.401531 TTTAGAGCCTGACAACGTTCTAT 57.598 39.130 0.00 0.00 0.00 1.98
374 375 3.963428 AGAGCCTGACAACGTTCTATT 57.037 42.857 0.00 0.00 0.00 1.73
375 376 3.589988 AGAGCCTGACAACGTTCTATTG 58.410 45.455 0.00 0.00 0.00 1.90
376 377 3.258372 AGAGCCTGACAACGTTCTATTGA 59.742 43.478 0.00 0.00 0.00 2.57
377 378 3.326747 AGCCTGACAACGTTCTATTGAC 58.673 45.455 0.00 0.00 0.00 3.18
378 379 2.415512 GCCTGACAACGTTCTATTGACC 59.584 50.000 0.00 0.00 0.00 4.02
379 380 3.000727 CCTGACAACGTTCTATTGACCC 58.999 50.000 0.00 0.00 0.00 4.46
380 381 3.000727 CTGACAACGTTCTATTGACCCC 58.999 50.000 0.00 0.00 0.00 4.95
381 382 2.289819 TGACAACGTTCTATTGACCCCC 60.290 50.000 0.00 0.00 0.00 5.40
382 383 1.982958 ACAACGTTCTATTGACCCCCT 59.017 47.619 0.00 0.00 0.00 4.79
383 384 3.175594 ACAACGTTCTATTGACCCCCTA 58.824 45.455 0.00 0.00 0.00 3.53
384 385 3.055602 ACAACGTTCTATTGACCCCCTAC 60.056 47.826 0.00 0.00 0.00 3.18
385 386 2.823959 ACGTTCTATTGACCCCCTACA 58.176 47.619 0.00 0.00 0.00 2.74
386 387 3.381335 ACGTTCTATTGACCCCCTACAT 58.619 45.455 0.00 0.00 0.00 2.29
387 388 3.134081 ACGTTCTATTGACCCCCTACATG 59.866 47.826 0.00 0.00 0.00 3.21
388 389 3.386726 CGTTCTATTGACCCCCTACATGA 59.613 47.826 0.00 0.00 0.00 3.07
389 390 4.040461 CGTTCTATTGACCCCCTACATGAT 59.960 45.833 0.00 0.00 0.00 2.45
390 391 5.454755 CGTTCTATTGACCCCCTACATGATT 60.455 44.000 0.00 0.00 0.00 2.57
391 392 6.239487 CGTTCTATTGACCCCCTACATGATTA 60.239 42.308 0.00 0.00 0.00 1.75
392 393 6.935240 TCTATTGACCCCCTACATGATTAG 57.065 41.667 0.00 0.00 0.00 1.73
393 394 3.857157 TTGACCCCCTACATGATTAGC 57.143 47.619 0.00 0.00 0.00 3.09
394 395 2.054799 TGACCCCCTACATGATTAGCC 58.945 52.381 0.00 0.00 0.00 3.93
395 396 2.054799 GACCCCCTACATGATTAGCCA 58.945 52.381 0.00 0.00 0.00 4.75
396 397 1.774856 ACCCCCTACATGATTAGCCAC 59.225 52.381 0.00 0.00 0.00 5.01
397 398 1.774254 CCCCCTACATGATTAGCCACA 59.226 52.381 0.00 0.00 0.00 4.17
398 399 2.376518 CCCCCTACATGATTAGCCACAT 59.623 50.000 0.00 0.00 0.00 3.21
399 400 3.181429 CCCCCTACATGATTAGCCACATT 60.181 47.826 0.00 0.00 0.00 2.71
400 401 4.473444 CCCCTACATGATTAGCCACATTT 58.527 43.478 0.00 0.00 0.00 2.32
401 402 4.895297 CCCCTACATGATTAGCCACATTTT 59.105 41.667 0.00 0.00 0.00 1.82
402 403 5.221303 CCCCTACATGATTAGCCACATTTTG 60.221 44.000 0.00 0.00 0.00 2.44
414 415 3.956233 CCACATTTTGGCATATGTCGAG 58.044 45.455 11.48 3.54 39.07 4.04
415 416 3.243168 CCACATTTTGGCATATGTCGAGG 60.243 47.826 11.48 7.78 39.07 4.63
416 417 3.627123 CACATTTTGGCATATGTCGAGGA 59.373 43.478 11.48 0.00 32.88 3.71
417 418 4.096231 CACATTTTGGCATATGTCGAGGAA 59.904 41.667 11.48 0.00 32.88 3.36
418 419 4.704540 ACATTTTGGCATATGTCGAGGAAA 59.295 37.500 2.28 2.15 29.23 3.13
419 420 5.360714 ACATTTTGGCATATGTCGAGGAAAT 59.639 36.000 2.28 4.29 29.23 2.17
420 421 6.545666 ACATTTTGGCATATGTCGAGGAAATA 59.454 34.615 2.28 0.00 29.23 1.40
421 422 6.371809 TTTTGGCATATGTCGAGGAAATAC 57.628 37.500 2.28 0.00 0.00 1.89
422 423 4.002906 TGGCATATGTCGAGGAAATACC 57.997 45.455 2.28 0.00 39.35 2.73
423 424 3.389656 TGGCATATGTCGAGGAAATACCA 59.610 43.478 2.28 0.00 42.04 3.25
424 425 4.041567 TGGCATATGTCGAGGAAATACCAT 59.958 41.667 2.28 0.00 42.04 3.55
425 426 4.393062 GGCATATGTCGAGGAAATACCATG 59.607 45.833 4.29 0.00 42.04 3.66
426 427 5.237815 GCATATGTCGAGGAAATACCATGA 58.762 41.667 4.29 0.00 42.04 3.07
427 428 5.877012 GCATATGTCGAGGAAATACCATGAT 59.123 40.000 4.29 0.00 42.04 2.45
428 429 7.041721 GCATATGTCGAGGAAATACCATGATA 58.958 38.462 4.29 0.00 42.04 2.15
448 449 5.878669 TGATAGTACTAGCTCTTGTGTTCGA 59.121 40.000 18.38 0.00 0.00 3.71
456 457 2.543848 GCTCTTGTGTTCGAATGTCACA 59.456 45.455 14.12 14.12 39.76 3.58
466 467 0.605319 GAATGTCACAGCCGGTCCAA 60.605 55.000 1.90 0.00 0.00 3.53
479 480 5.241506 CAGCCGGTCCAACATTATTCATAAT 59.758 40.000 1.90 0.00 33.44 1.28
577 581 3.953775 CGTTGACAGTGGGCCCCT 61.954 66.667 22.27 13.66 0.00 4.79
578 582 2.282462 GTTGACAGTGGGCCCCTG 60.282 66.667 28.88 28.88 36.01 4.45
579 583 2.776526 TTGACAGTGGGCCCCTGT 60.777 61.111 33.56 33.56 45.52 4.00
601 625 7.495606 CCTGTCACATTATACAGCTGAATACAA 59.504 37.037 23.35 7.06 41.45 2.41
602 626 8.962884 TGTCACATTATACAGCTGAATACAAT 57.037 30.769 23.35 9.08 0.00 2.71
615 639 7.227314 CAGCTGAATACAATATAGAAAGCACCA 59.773 37.037 8.42 0.00 0.00 4.17
631 655 5.791336 AGCACCATATATGAACGAGAAGA 57.209 39.130 14.54 0.00 0.00 2.87
689 713 8.357402 GTGTATTTACCTCTTGAAACAACCATT 58.643 33.333 0.00 0.00 0.00 3.16
692 716 8.706322 ATTTACCTCTTGAAACAACCATTACT 57.294 30.769 0.00 0.00 0.00 2.24
693 717 8.528044 TTTACCTCTTGAAACAACCATTACTT 57.472 30.769 0.00 0.00 0.00 2.24
910 939 1.982395 GCCAAACCCTAACCCTGCC 60.982 63.158 0.00 0.00 0.00 4.85
924 2968 5.922960 AACCCTGCCATCCATATAAACTA 57.077 39.130 0.00 0.00 0.00 2.24
925 2969 5.505181 ACCCTGCCATCCATATAAACTAG 57.495 43.478 0.00 0.00 0.00 2.57
927 2971 4.265073 CCTGCCATCCATATAAACTAGCC 58.735 47.826 0.00 0.00 0.00 3.93
933 2978 5.485353 CCATCCATATAAACTAGCCTCTCCA 59.515 44.000 0.00 0.00 0.00 3.86
934 2979 6.157645 CCATCCATATAAACTAGCCTCTCCAT 59.842 42.308 0.00 0.00 0.00 3.41
957 3002 3.465403 CTGTCCAGCCTCTCCCCG 61.465 72.222 0.00 0.00 0.00 5.73
1119 3174 3.441011 GATCCGCCCCGACGTCATT 62.441 63.158 17.16 0.00 0.00 2.57
1620 3675 4.590487 CGCAGGTACATCAACCGT 57.410 55.556 0.00 0.00 44.77 4.83
1761 3816 2.593436 CACCTTGGCCGGTTCGTT 60.593 61.111 1.90 0.00 34.29 3.85
1989 4044 2.986306 GAATGCTGCTGCCGTGCTT 61.986 57.895 13.47 0.00 38.71 3.91
2317 4382 5.960113 TGCACATTTCCATATGTTTGTACC 58.040 37.500 1.24 0.00 36.64 3.34
2485 4901 6.788243 TCAGTTCATAGCTGCATGTTTAATG 58.212 36.000 1.02 4.70 34.21 1.90
2499 4916 9.579768 TGCATGTTTAATGTTTGTATCCATAAC 57.420 29.630 0.00 0.00 0.00 1.89
2631 5091 6.710295 GGCATGCCATACCGAATATATGATTA 59.290 38.462 32.08 0.00 32.66 1.75
2659 5119 7.285172 CCAGTATCCAATATGATTGGTTTGTGA 59.715 37.037 15.98 0.00 40.40 3.58
2660 5120 8.347771 CAGTATCCAATATGATTGGTTTGTGAG 58.652 37.037 15.98 1.53 40.40 3.51
2662 5122 5.015515 TCCAATATGATTGGTTTGTGAGCA 58.984 37.500 15.98 0.00 40.40 4.26
2681 5142 3.663464 CATTGTATGCCACTTGTCTCG 57.337 47.619 0.00 0.00 0.00 4.04
2868 5336 6.319141 ACAAGCTAAGGTTTGATTGAGTTC 57.681 37.500 8.74 0.00 37.16 3.01
3038 5663 1.218316 GAAGGCCTGGTACCAGACG 59.782 63.158 38.35 25.07 46.30 4.18
3168 5855 6.651225 TGATTTTGTCATTACCGTGTCATGTA 59.349 34.615 0.00 0.00 0.00 2.29
3180 5867 4.625742 CCGTGTCATGTAATCGATTATCCC 59.374 45.833 20.21 8.92 0.00 3.85
3196 5883 0.252197 TCCCGAGTCTGAGACATCGA 59.748 55.000 25.17 10.44 36.28 3.59
3307 5997 5.846473 GTCGTTAGTTCAGATTTTGAGTTGC 59.154 40.000 0.00 0.00 37.07 4.17
3344 6034 6.754702 ATATATACTCTGTCGTAATGCCGT 57.245 37.500 0.00 0.00 0.00 5.68
3345 6035 3.795623 ATACTCTGTCGTAATGCCGTT 57.204 42.857 0.00 0.00 0.00 4.44
3346 6036 2.450609 ACTCTGTCGTAATGCCGTTT 57.549 45.000 0.00 0.00 0.00 3.60
3347 6037 2.066262 ACTCTGTCGTAATGCCGTTTG 58.934 47.619 0.00 0.00 0.00 2.93
3348 6038 2.288579 ACTCTGTCGTAATGCCGTTTGA 60.289 45.455 0.00 0.00 0.00 2.69
3349 6039 2.930040 CTCTGTCGTAATGCCGTTTGAT 59.070 45.455 0.00 0.00 0.00 2.57
3350 6040 4.109766 CTCTGTCGTAATGCCGTTTGATA 58.890 43.478 0.00 0.00 0.00 2.15
3351 6041 4.689071 TCTGTCGTAATGCCGTTTGATAT 58.311 39.130 0.00 0.00 0.00 1.63
3352 6042 5.113383 TCTGTCGTAATGCCGTTTGATATT 58.887 37.500 0.00 0.00 0.00 1.28
3353 6043 5.006261 TCTGTCGTAATGCCGTTTGATATTG 59.994 40.000 0.00 0.00 0.00 1.90
3354 6044 4.632251 TGTCGTAATGCCGTTTGATATTGT 59.368 37.500 0.00 0.00 0.00 2.71
3355 6045 5.122554 TGTCGTAATGCCGTTTGATATTGTT 59.877 36.000 0.00 0.00 0.00 2.83
3356 6046 6.025280 GTCGTAATGCCGTTTGATATTGTTT 58.975 36.000 0.00 0.00 0.00 2.83
3357 6047 6.525280 GTCGTAATGCCGTTTGATATTGTTTT 59.475 34.615 0.00 0.00 0.00 2.43
3358 6048 6.743627 TCGTAATGCCGTTTGATATTGTTTTC 59.256 34.615 0.00 0.00 0.00 2.29
3359 6049 6.020995 CGTAATGCCGTTTGATATTGTTTTCC 60.021 38.462 0.00 0.00 0.00 3.13
3360 6050 4.181309 TGCCGTTTGATATTGTTTTCCC 57.819 40.909 0.00 0.00 0.00 3.97
3361 6051 3.574396 TGCCGTTTGATATTGTTTTCCCA 59.426 39.130 0.00 0.00 0.00 4.37
3362 6052 4.173256 GCCGTTTGATATTGTTTTCCCAG 58.827 43.478 0.00 0.00 0.00 4.45
3363 6053 4.321675 GCCGTTTGATATTGTTTTCCCAGT 60.322 41.667 0.00 0.00 0.00 4.00
3364 6054 5.778862 CCGTTTGATATTGTTTTCCCAGTT 58.221 37.500 0.00 0.00 0.00 3.16
3365 6055 6.220201 CCGTTTGATATTGTTTTCCCAGTTT 58.780 36.000 0.00 0.00 0.00 2.66
3366 6056 6.145371 CCGTTTGATATTGTTTTCCCAGTTTG 59.855 38.462 0.00 0.00 0.00 2.93
3367 6057 6.699642 CGTTTGATATTGTTTTCCCAGTTTGT 59.300 34.615 0.00 0.00 0.00 2.83
3368 6058 7.863375 CGTTTGATATTGTTTTCCCAGTTTGTA 59.137 33.333 0.00 0.00 0.00 2.41
3369 6059 8.974408 GTTTGATATTGTTTTCCCAGTTTGTAC 58.026 33.333 0.00 0.00 0.00 2.90
3370 6060 7.222000 TGATATTGTTTTCCCAGTTTGTACC 57.778 36.000 0.00 0.00 0.00 3.34
3371 6061 7.007723 TGATATTGTTTTCCCAGTTTGTACCT 58.992 34.615 0.00 0.00 0.00 3.08
3372 6062 5.784578 ATTGTTTTCCCAGTTTGTACCTC 57.215 39.130 0.00 0.00 0.00 3.85
3373 6063 4.513406 TGTTTTCCCAGTTTGTACCTCT 57.487 40.909 0.00 0.00 0.00 3.69
3374 6064 4.862371 TGTTTTCCCAGTTTGTACCTCTT 58.138 39.130 0.00 0.00 0.00 2.85
3375 6065 6.003859 TGTTTTCCCAGTTTGTACCTCTTA 57.996 37.500 0.00 0.00 0.00 2.10
3376 6066 6.607019 TGTTTTCCCAGTTTGTACCTCTTAT 58.393 36.000 0.00 0.00 0.00 1.73
3377 6067 7.064229 TGTTTTCCCAGTTTGTACCTCTTATT 58.936 34.615 0.00 0.00 0.00 1.40
3378 6068 7.562088 TGTTTTCCCAGTTTGTACCTCTTATTT 59.438 33.333 0.00 0.00 0.00 1.40
3379 6069 9.070179 GTTTTCCCAGTTTGTACCTCTTATTTA 57.930 33.333 0.00 0.00 0.00 1.40
3380 6070 8.857694 TTTCCCAGTTTGTACCTCTTATTTAG 57.142 34.615 0.00 0.00 0.00 1.85
3381 6071 7.801893 TCCCAGTTTGTACCTCTTATTTAGA 57.198 36.000 0.00 0.00 0.00 2.10
3474 6164 6.742559 TTCTGAACTTGGTTACTACTTCCT 57.257 37.500 0.00 0.00 0.00 3.36
3475 6165 6.097915 TCTGAACTTGGTTACTACTTCCTG 57.902 41.667 0.00 0.00 0.00 3.86
3535 6226 1.048601 TTTGGGTTGCGGGCATAAAA 58.951 45.000 0.00 0.00 0.00 1.52
3537 6228 1.254284 TGGGTTGCGGGCATAAAAGG 61.254 55.000 0.00 0.00 0.00 3.11
3538 6229 1.153647 GGTTGCGGGCATAAAAGGC 60.154 57.895 0.00 0.00 0.00 4.35
3557 6249 1.878102 GCGAAAAGCTCCAGGTTGAGA 60.878 52.381 0.00 0.00 44.04 3.27
3558 6250 2.072298 CGAAAAGCTCCAGGTTGAGAG 58.928 52.381 0.00 0.00 35.72 3.20
3585 6277 9.872721 CAAGTAATCTGAGCATACATATCTGAT 57.127 33.333 0.00 0.00 34.34 2.90
3646 6338 1.293062 AGTCATCACAAGCCCAGGAT 58.707 50.000 0.00 0.00 0.00 3.24
3648 6340 0.394762 TCATCACAAGCCCAGGATGC 60.395 55.000 0.00 0.00 37.61 3.91
3649 6341 0.681887 CATCACAAGCCCAGGATGCA 60.682 55.000 0.00 0.00 31.77 3.96
3650 6342 0.682209 ATCACAAGCCCAGGATGCAC 60.682 55.000 0.00 0.00 31.97 4.57
3651 6343 1.604308 CACAAGCCCAGGATGCACA 60.604 57.895 0.00 0.00 31.97 4.57
3652 6344 1.604593 ACAAGCCCAGGATGCACAC 60.605 57.895 0.00 0.00 31.97 3.82
3653 6345 1.604308 CAAGCCCAGGATGCACACA 60.604 57.895 0.00 0.00 31.97 3.72
3654 6346 1.604593 AAGCCCAGGATGCACACAC 60.605 57.895 0.00 0.00 31.97 3.82
3655 6347 2.282391 GCCCAGGATGCACACACA 60.282 61.111 0.00 0.00 31.97 3.72
3656 6348 1.902918 GCCCAGGATGCACACACAA 60.903 57.895 0.00 0.00 31.97 3.33
3657 6349 1.462731 GCCCAGGATGCACACACAAA 61.463 55.000 0.00 0.00 31.97 2.83
3658 6350 1.039068 CCCAGGATGCACACACAAAA 58.961 50.000 0.00 0.00 31.97 2.44
3659 6351 1.619827 CCCAGGATGCACACACAAAAT 59.380 47.619 0.00 0.00 31.97 1.82
3660 6352 2.610976 CCCAGGATGCACACACAAAATG 60.611 50.000 0.00 0.00 31.97 2.32
3661 6353 2.610976 CCAGGATGCACACACAAAATGG 60.611 50.000 0.00 0.00 31.97 3.16
3662 6354 2.296752 CAGGATGCACACACAAAATGGA 59.703 45.455 0.00 0.00 0.00 3.41
3671 6363 2.162208 CACACAAAATGGATCTGTCGGG 59.838 50.000 0.00 0.00 0.00 5.14
3748 6443 5.640189 TGGGTCTAGTTTTCTAAGAGTCG 57.360 43.478 0.00 0.00 31.45 4.18
3809 6504 1.069090 GAGTCGGTGTCCACAGCAA 59.931 57.895 9.44 0.00 44.00 3.91
3815 6510 1.540363 CGGTGTCCACAGCAAAGTAGT 60.540 52.381 9.44 0.00 44.00 2.73
3864 6559 3.056588 TGCATCACAACAGATACAGCA 57.943 42.857 0.00 0.00 0.00 4.41
3882 6577 9.319143 GATACAGCAAAACATTATACAGAGACT 57.681 33.333 0.00 0.00 0.00 3.24
3924 6619 3.426292 GGCCGCTCAAACTGAAACTTATC 60.426 47.826 0.00 0.00 0.00 1.75
3961 6656 1.635844 CAAGCGACGGTACAGCATAA 58.364 50.000 0.00 0.00 0.00 1.90
4014 6709 0.329596 AGGTCACCCAGCCAATCTTC 59.670 55.000 0.00 0.00 0.00 2.87
4055 6750 8.803235 TCTAAGAGAGCAAGAAACACATAAGTA 58.197 33.333 0.00 0.00 0.00 2.24
4056 6751 7.659652 AAGAGAGCAAGAAACACATAAGTAC 57.340 36.000 0.00 0.00 0.00 2.73
4057 6752 6.759272 AGAGAGCAAGAAACACATAAGTACA 58.241 36.000 0.00 0.00 0.00 2.90
4058 6753 7.217200 AGAGAGCAAGAAACACATAAGTACAA 58.783 34.615 0.00 0.00 0.00 2.41
4059 6754 7.171678 AGAGAGCAAGAAACACATAAGTACAAC 59.828 37.037 0.00 0.00 0.00 3.32
4060 6755 6.765989 AGAGCAAGAAACACATAAGTACAACA 59.234 34.615 0.00 0.00 0.00 3.33
4061 6756 6.959361 AGCAAGAAACACATAAGTACAACAG 58.041 36.000 0.00 0.00 0.00 3.16
4062 6757 5.625311 GCAAGAAACACATAAGTACAACAGC 59.375 40.000 0.00 0.00 0.00 4.40
4063 6758 5.591643 AGAAACACATAAGTACAACAGCG 57.408 39.130 0.00 0.00 0.00 5.18
4064 6759 5.294356 AGAAACACATAAGTACAACAGCGA 58.706 37.500 0.00 0.00 0.00 4.93
4065 6760 5.405571 AGAAACACATAAGTACAACAGCGAG 59.594 40.000 0.00 0.00 0.00 5.03
4066 6761 3.585862 ACACATAAGTACAACAGCGAGG 58.414 45.455 0.00 0.00 0.00 4.63
4067 6762 2.930040 CACATAAGTACAACAGCGAGGG 59.070 50.000 0.00 0.00 0.00 4.30
4068 6763 2.829720 ACATAAGTACAACAGCGAGGGA 59.170 45.455 0.00 0.00 0.00 4.20
4069 6764 3.259876 ACATAAGTACAACAGCGAGGGAA 59.740 43.478 0.00 0.00 0.00 3.97
4070 6765 2.922740 AAGTACAACAGCGAGGGAAA 57.077 45.000 0.00 0.00 0.00 3.13
4071 6766 2.165319 AGTACAACAGCGAGGGAAAC 57.835 50.000 0.00 0.00 0.00 2.78
4072 6767 1.692519 AGTACAACAGCGAGGGAAACT 59.307 47.619 0.00 0.00 0.00 2.66
4073 6768 2.895404 AGTACAACAGCGAGGGAAACTA 59.105 45.455 0.00 0.00 0.00 2.24
4074 6769 2.165319 ACAACAGCGAGGGAAACTAC 57.835 50.000 0.00 0.00 0.00 2.73
4075 6770 1.414919 ACAACAGCGAGGGAAACTACA 59.585 47.619 0.00 0.00 0.00 2.74
4076 6771 1.798813 CAACAGCGAGGGAAACTACAC 59.201 52.381 0.00 0.00 0.00 2.90
4077 6772 0.320697 ACAGCGAGGGAAACTACACC 59.679 55.000 0.00 0.00 0.00 4.16
4078 6773 0.608640 CAGCGAGGGAAACTACACCT 59.391 55.000 0.00 0.00 37.31 4.00
4079 6774 0.896226 AGCGAGGGAAACTACACCTC 59.104 55.000 0.00 0.00 45.73 3.85
4080 6775 0.896226 GCGAGGGAAACTACACCTCT 59.104 55.000 8.17 0.00 46.74 3.69
4081 6776 1.404315 GCGAGGGAAACTACACCTCTG 60.404 57.143 8.17 3.65 46.74 3.35
4082 6777 2.168496 CGAGGGAAACTACACCTCTGA 58.832 52.381 8.17 0.00 46.74 3.27
4083 6778 2.761208 CGAGGGAAACTACACCTCTGAT 59.239 50.000 8.17 0.00 46.74 2.90
4084 6779 3.181485 CGAGGGAAACTACACCTCTGATC 60.181 52.174 8.17 0.00 46.74 2.92
4085 6780 3.769844 GAGGGAAACTACACCTCTGATCA 59.230 47.826 0.00 0.00 45.73 2.92
4086 6781 4.168101 AGGGAAACTACACCTCTGATCAA 58.832 43.478 0.00 0.00 0.00 2.57
4087 6782 4.223923 AGGGAAACTACACCTCTGATCAAG 59.776 45.833 0.00 0.00 0.00 3.02
4088 6783 4.223032 GGGAAACTACACCTCTGATCAAGA 59.777 45.833 0.00 0.00 0.00 3.02
4089 6784 5.280011 GGGAAACTACACCTCTGATCAAGAA 60.280 44.000 0.00 0.00 33.37 2.52
4090 6785 6.410540 GGAAACTACACCTCTGATCAAGAAT 58.589 40.000 0.00 0.00 33.37 2.40
4091 6786 7.364762 GGGAAACTACACCTCTGATCAAGAATA 60.365 40.741 0.00 0.00 33.37 1.75
4092 6787 8.207545 GGAAACTACACCTCTGATCAAGAATAT 58.792 37.037 0.00 0.00 33.37 1.28
4093 6788 9.606631 GAAACTACACCTCTGATCAAGAATATT 57.393 33.333 0.00 0.00 33.37 1.28
4094 6789 9.965902 AAACTACACCTCTGATCAAGAATATTT 57.034 29.630 0.00 0.00 33.37 1.40
4095 6790 9.965902 AACTACACCTCTGATCAAGAATATTTT 57.034 29.630 0.00 0.00 33.37 1.82
4096 6791 9.965902 ACTACACCTCTGATCAAGAATATTTTT 57.034 29.630 0.00 0.00 33.37 1.94
4099 6794 8.883731 ACACCTCTGATCAAGAATATTTTTACG 58.116 33.333 0.00 0.00 33.37 3.18
4100 6795 8.338259 CACCTCTGATCAAGAATATTTTTACGG 58.662 37.037 0.00 0.00 33.37 4.02
4101 6796 8.047310 ACCTCTGATCAAGAATATTTTTACGGT 58.953 33.333 0.00 0.00 33.37 4.83
4102 6797 8.893727 CCTCTGATCAAGAATATTTTTACGGTT 58.106 33.333 0.00 0.00 33.37 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.168291 CTGGGCTCCGGCTTCTCC 62.168 72.222 0.00 0.00 38.73 3.71
20 21 3.077556 TCTGGGCTCCGGCTTCTC 61.078 66.667 0.00 0.00 38.73 2.87
21 22 3.080121 CTCTGGGCTCCGGCTTCT 61.080 66.667 0.00 0.00 38.73 2.85
22 23 3.077556 TCTCTGGGCTCCGGCTTC 61.078 66.667 0.00 0.00 38.73 3.86
23 24 3.394836 GTCTCTGGGCTCCGGCTT 61.395 66.667 0.00 0.00 38.73 4.35
24 25 4.704103 TGTCTCTGGGCTCCGGCT 62.704 66.667 0.00 0.00 38.73 5.52
25 26 4.459089 GTGTCTCTGGGCTCCGGC 62.459 72.222 0.00 0.00 37.82 6.13
26 27 2.681778 AGTGTCTCTGGGCTCCGG 60.682 66.667 0.00 0.00 0.00 5.14
27 28 1.979155 TCAGTGTCTCTGGGCTCCG 60.979 63.158 2.21 0.00 43.76 4.63
28 29 1.594310 GTCAGTGTCTCTGGGCTCC 59.406 63.158 2.21 0.00 43.76 4.70
29 30 1.214062 CGTCAGTGTCTCTGGGCTC 59.786 63.158 2.21 0.00 43.76 4.70
30 31 2.279069 CCGTCAGTGTCTCTGGGCT 61.279 63.158 2.21 0.00 43.76 5.19
31 32 2.262915 CCGTCAGTGTCTCTGGGC 59.737 66.667 2.21 0.00 43.76 5.36
32 33 2.262915 GCCGTCAGTGTCTCTGGG 59.737 66.667 2.21 0.00 43.76 4.45
33 34 1.080230 CAGCCGTCAGTGTCTCTGG 60.080 63.158 2.21 0.00 43.76 3.86
34 35 1.080230 CCAGCCGTCAGTGTCTCTG 60.080 63.158 0.00 0.00 44.85 3.35
35 36 2.279069 CCCAGCCGTCAGTGTCTCT 61.279 63.158 0.00 0.00 0.00 3.10
36 37 2.262915 CCCAGCCGTCAGTGTCTC 59.737 66.667 0.00 0.00 0.00 3.36
37 38 2.524394 ACCCAGCCGTCAGTGTCT 60.524 61.111 0.00 0.00 0.00 3.41
38 39 2.048127 GACCCAGCCGTCAGTGTC 60.048 66.667 0.00 0.00 32.74 3.67
39 40 2.725127 TAGGACCCAGCCGTCAGTGT 62.725 60.000 0.00 0.00 34.24 3.55
40 41 1.949847 CTAGGACCCAGCCGTCAGTG 61.950 65.000 0.00 0.00 34.24 3.66
41 42 1.682684 CTAGGACCCAGCCGTCAGT 60.683 63.158 0.00 0.00 34.24 3.41
42 43 2.427245 CCTAGGACCCAGCCGTCAG 61.427 68.421 1.05 0.00 34.24 3.51
43 44 2.363795 CCTAGGACCCAGCCGTCA 60.364 66.667 1.05 0.00 34.24 4.35
44 45 2.043248 TCCTAGGACCCAGCCGTC 60.043 66.667 7.62 0.00 0.00 4.79
45 46 2.363925 GTCCTAGGACCCAGCCGT 60.364 66.667 28.87 0.00 39.08 5.68
53 54 0.831307 AATTCGGCTGGTCCTAGGAC 59.169 55.000 30.72 30.72 43.87 3.85
54 55 2.037144 GTAATTCGGCTGGTCCTAGGA 58.963 52.381 7.62 7.62 0.00 2.94
55 56 1.070289 GGTAATTCGGCTGGTCCTAGG 59.930 57.143 0.82 0.82 0.00 3.02
56 57 1.760613 TGGTAATTCGGCTGGTCCTAG 59.239 52.381 0.00 0.00 0.00 3.02
57 58 1.868713 TGGTAATTCGGCTGGTCCTA 58.131 50.000 0.00 0.00 0.00 2.94
58 59 1.213296 ATGGTAATTCGGCTGGTCCT 58.787 50.000 0.00 0.00 0.00 3.85
59 60 1.676006 CAATGGTAATTCGGCTGGTCC 59.324 52.381 0.00 0.00 0.00 4.46
60 61 2.365582 ACAATGGTAATTCGGCTGGTC 58.634 47.619 0.00 0.00 0.00 4.02
61 62 2.507407 ACAATGGTAATTCGGCTGGT 57.493 45.000 0.00 0.00 0.00 4.00
62 63 2.616842 GGTACAATGGTAATTCGGCTGG 59.383 50.000 0.00 0.00 0.00 4.85
63 64 2.616842 GGGTACAATGGTAATTCGGCTG 59.383 50.000 0.00 0.00 0.00 4.85
64 65 2.422377 GGGGTACAATGGTAATTCGGCT 60.422 50.000 0.00 0.00 0.00 5.52
65 66 1.951602 GGGGTACAATGGTAATTCGGC 59.048 52.381 0.00 0.00 0.00 5.54
66 67 3.211045 CAGGGGTACAATGGTAATTCGG 58.789 50.000 0.00 0.00 0.00 4.30
67 68 3.211045 CCAGGGGTACAATGGTAATTCG 58.789 50.000 0.00 0.00 0.00 3.34
68 69 3.562182 CCCAGGGGTACAATGGTAATTC 58.438 50.000 0.00 0.00 31.85 2.17
69 70 2.246327 CCCCAGGGGTACAATGGTAATT 59.754 50.000 18.09 0.00 38.25 1.40
70 71 1.856920 CCCCAGGGGTACAATGGTAAT 59.143 52.381 18.09 0.00 38.25 1.89
71 72 1.203583 TCCCCAGGGGTACAATGGTAA 60.204 52.381 25.52 0.00 44.74 2.85
72 73 0.422313 TCCCCAGGGGTACAATGGTA 59.578 55.000 25.52 0.00 44.74 3.25
73 74 0.254107 ATCCCCAGGGGTACAATGGT 60.254 55.000 25.52 0.00 44.74 3.55
74 75 1.705186 CTATCCCCAGGGGTACAATGG 59.295 57.143 25.52 8.68 44.74 3.16
75 76 1.705186 CCTATCCCCAGGGGTACAATG 59.295 57.143 25.52 9.66 44.74 2.82
76 77 2.051039 GCCTATCCCCAGGGGTACAAT 61.051 57.143 25.52 13.03 44.74 2.71
77 78 0.696485 GCCTATCCCCAGGGGTACAA 60.696 60.000 25.52 5.04 44.74 2.41
78 79 1.074014 GCCTATCCCCAGGGGTACA 60.074 63.158 25.52 5.48 44.74 2.90
79 80 1.846584 GGCCTATCCCCAGGGGTAC 60.847 68.421 25.52 10.14 44.74 3.34
80 81 0.710518 TAGGCCTATCCCCAGGGGTA 60.711 60.000 25.52 14.64 44.74 3.69
81 82 1.396680 ATAGGCCTATCCCCAGGGGT 61.397 60.000 25.52 14.27 44.74 4.95
82 83 0.722676 TATAGGCCTATCCCCAGGGG 59.277 60.000 28.75 20.55 46.11 4.79
83 84 2.897823 ATATAGGCCTATCCCCAGGG 57.102 55.000 28.75 0.00 36.10 4.45
84 85 4.412528 GGTTTATATAGGCCTATCCCCAGG 59.587 50.000 28.75 0.00 38.86 4.45
85 86 4.412528 GGGTTTATATAGGCCTATCCCCAG 59.587 50.000 28.75 0.00 34.51 4.45
86 87 4.377134 GGGTTTATATAGGCCTATCCCCA 58.623 47.826 28.75 12.04 34.51 4.96
87 88 3.720526 GGGGTTTATATAGGCCTATCCCC 59.279 52.174 34.16 34.16 44.02 4.81
88 89 4.642938 AGGGGTTTATATAGGCCTATCCC 58.357 47.826 28.75 28.13 34.51 3.85
89 90 6.329460 CCTAAGGGGTTTATATAGGCCTATCC 59.671 46.154 28.75 21.48 0.00 2.59
90 91 7.376335 CCTAAGGGGTTTATATAGGCCTATC 57.624 44.000 28.75 13.75 0.00 2.08
120 121 3.912899 GGTTGAACCCTTTGCATGG 57.087 52.632 2.08 0.00 30.04 3.66
130 131 4.764823 TGTGTGATCTAAATGGGTTGAACC 59.235 41.667 5.62 5.62 37.60 3.62
131 132 5.240623 TGTGTGTGATCTAAATGGGTTGAAC 59.759 40.000 0.00 0.00 0.00 3.18
132 133 5.240623 GTGTGTGTGATCTAAATGGGTTGAA 59.759 40.000 0.00 0.00 0.00 2.69
133 134 4.759693 GTGTGTGTGATCTAAATGGGTTGA 59.240 41.667 0.00 0.00 0.00 3.18
134 135 4.082787 GGTGTGTGTGATCTAAATGGGTTG 60.083 45.833 0.00 0.00 0.00 3.77
135 136 4.079253 GGTGTGTGTGATCTAAATGGGTT 58.921 43.478 0.00 0.00 0.00 4.11
136 137 3.561313 GGGTGTGTGTGATCTAAATGGGT 60.561 47.826 0.00 0.00 0.00 4.51
137 138 3.016736 GGGTGTGTGTGATCTAAATGGG 58.983 50.000 0.00 0.00 0.00 4.00
138 139 3.684908 TGGGTGTGTGTGATCTAAATGG 58.315 45.455 0.00 0.00 0.00 3.16
139 140 5.008019 GCTATGGGTGTGTGTGATCTAAATG 59.992 44.000 0.00 0.00 0.00 2.32
140 141 5.104360 AGCTATGGGTGTGTGTGATCTAAAT 60.104 40.000 0.00 0.00 0.00 1.40
141 142 4.225042 AGCTATGGGTGTGTGTGATCTAAA 59.775 41.667 0.00 0.00 0.00 1.85
142 143 3.774766 AGCTATGGGTGTGTGTGATCTAA 59.225 43.478 0.00 0.00 0.00 2.10
143 144 3.374764 AGCTATGGGTGTGTGTGATCTA 58.625 45.455 0.00 0.00 0.00 1.98
144 145 2.191400 AGCTATGGGTGTGTGTGATCT 58.809 47.619 0.00 0.00 0.00 2.75
145 146 2.698855 AGCTATGGGTGTGTGTGATC 57.301 50.000 0.00 0.00 0.00 2.92
146 147 3.118261 CCTTAGCTATGGGTGTGTGTGAT 60.118 47.826 16.29 0.00 0.00 3.06
147 148 2.236146 CCTTAGCTATGGGTGTGTGTGA 59.764 50.000 16.29 0.00 0.00 3.58
148 149 2.236146 TCCTTAGCTATGGGTGTGTGTG 59.764 50.000 22.03 0.00 0.00 3.82
149 150 2.501723 CTCCTTAGCTATGGGTGTGTGT 59.498 50.000 22.03 0.00 0.00 3.72
150 151 2.766263 TCTCCTTAGCTATGGGTGTGTG 59.234 50.000 22.03 8.71 0.00 3.82
151 152 3.116096 TCTCCTTAGCTATGGGTGTGT 57.884 47.619 22.03 0.00 0.00 3.72
152 153 3.742640 GCTTCTCCTTAGCTATGGGTGTG 60.743 52.174 22.03 12.92 35.74 3.82
153 154 2.436173 GCTTCTCCTTAGCTATGGGTGT 59.564 50.000 22.03 0.00 35.74 4.16
154 155 2.435805 TGCTTCTCCTTAGCTATGGGTG 59.564 50.000 22.03 15.93 39.38 4.61
155 156 2.703007 CTGCTTCTCCTTAGCTATGGGT 59.297 50.000 22.03 0.00 39.38 4.51
156 157 2.968574 TCTGCTTCTCCTTAGCTATGGG 59.031 50.000 22.03 14.49 39.38 4.00
157 158 3.554752 GCTCTGCTTCTCCTTAGCTATGG 60.555 52.174 17.66 17.66 39.38 2.74
158 159 3.321682 AGCTCTGCTTCTCCTTAGCTATG 59.678 47.826 0.00 0.00 38.48 2.23
159 160 3.575805 AGCTCTGCTTCTCCTTAGCTAT 58.424 45.455 0.00 0.00 38.48 2.97
160 161 3.025322 AGCTCTGCTTCTCCTTAGCTA 57.975 47.619 0.00 0.00 38.48 3.32
161 162 1.864669 AGCTCTGCTTCTCCTTAGCT 58.135 50.000 0.00 0.00 39.38 3.32
162 163 2.545742 GCTAGCTCTGCTTCTCCTTAGC 60.546 54.545 7.70 0.00 40.44 3.09
163 164 2.958355 AGCTAGCTCTGCTTCTCCTTAG 59.042 50.000 12.68 0.00 40.44 2.18
164 165 2.692557 CAGCTAGCTCTGCTTCTCCTTA 59.307 50.000 16.15 0.00 40.44 2.69
165 166 1.481772 CAGCTAGCTCTGCTTCTCCTT 59.518 52.381 16.15 0.00 40.44 3.36
166 167 1.113788 CAGCTAGCTCTGCTTCTCCT 58.886 55.000 16.15 0.00 40.44 3.69
167 168 3.665544 CAGCTAGCTCTGCTTCTCC 57.334 57.895 16.15 0.00 40.44 3.71
174 175 1.473080 GGAAGAAGGCAGCTAGCTCTG 60.473 57.143 16.15 6.97 44.79 3.35
175 176 0.829990 GGAAGAAGGCAGCTAGCTCT 59.170 55.000 16.15 7.26 44.79 4.09
176 177 0.829990 AGGAAGAAGGCAGCTAGCTC 59.170 55.000 16.15 9.87 44.79 4.09
177 178 0.829990 GAGGAAGAAGGCAGCTAGCT 59.170 55.000 12.68 12.68 44.79 3.32
178 179 0.179059 GGAGGAAGAAGGCAGCTAGC 60.179 60.000 6.62 6.62 44.65 3.42
179 180 1.412343 GAGGAGGAAGAAGGCAGCTAG 59.588 57.143 0.00 0.00 0.00 3.42
180 181 1.007721 AGAGGAGGAAGAAGGCAGCTA 59.992 52.381 0.00 0.00 0.00 3.32
181 182 0.252650 AGAGGAGGAAGAAGGCAGCT 60.253 55.000 0.00 0.00 0.00 4.24
182 183 1.412343 CTAGAGGAGGAAGAAGGCAGC 59.588 57.143 0.00 0.00 0.00 5.25
183 184 1.412343 GCTAGAGGAGGAAGAAGGCAG 59.588 57.143 0.00 0.00 0.00 4.85
184 185 1.490574 GCTAGAGGAGGAAGAAGGCA 58.509 55.000 0.00 0.00 0.00 4.75
185 186 0.756294 GGCTAGAGGAGGAAGAAGGC 59.244 60.000 0.00 0.00 0.00 4.35
186 187 1.419381 GGGCTAGAGGAGGAAGAAGG 58.581 60.000 0.00 0.00 0.00 3.46
187 188 1.036707 CGGGCTAGAGGAGGAAGAAG 58.963 60.000 0.00 0.00 0.00 2.85
188 189 0.629596 TCGGGCTAGAGGAGGAAGAA 59.370 55.000 0.00 0.00 0.00 2.52
189 190 0.629596 TTCGGGCTAGAGGAGGAAGA 59.370 55.000 0.00 0.00 0.00 2.87
190 191 0.747852 GTTCGGGCTAGAGGAGGAAG 59.252 60.000 0.00 0.00 0.00 3.46
191 192 1.035932 CGTTCGGGCTAGAGGAGGAA 61.036 60.000 0.00 0.00 0.00 3.36
192 193 1.453379 CGTTCGGGCTAGAGGAGGA 60.453 63.158 0.00 0.00 0.00 3.71
193 194 2.491022 CCGTTCGGGCTAGAGGAGG 61.491 68.421 3.04 0.00 0.00 4.30
194 195 3.121019 CCGTTCGGGCTAGAGGAG 58.879 66.667 3.04 0.00 0.00 3.69
203 204 2.125512 CTCCTTGAGCCGTTCGGG 60.126 66.667 13.16 0.00 39.58 5.14
217 218 2.409948 AGCAAGTACAAGGATGCTCC 57.590 50.000 0.00 0.00 45.49 4.70
218 219 5.118990 TCAATAGCAAGTACAAGGATGCTC 58.881 41.667 11.60 0.00 45.49 4.26
220 221 5.528690 TGATCAATAGCAAGTACAAGGATGC 59.471 40.000 0.00 0.00 39.06 3.91
221 222 7.741027 ATGATCAATAGCAAGTACAAGGATG 57.259 36.000 0.00 0.00 0.00 3.51
222 223 8.654997 ACTATGATCAATAGCAAGTACAAGGAT 58.345 33.333 0.00 0.00 41.91 3.24
223 224 7.928167 CACTATGATCAATAGCAAGTACAAGGA 59.072 37.037 0.00 0.00 41.91 3.36
224 225 7.928167 TCACTATGATCAATAGCAAGTACAAGG 59.072 37.037 0.00 0.00 41.91 3.61
225 226 8.877808 TCACTATGATCAATAGCAAGTACAAG 57.122 34.615 0.00 0.00 41.91 3.16
226 227 9.264719 CATCACTATGATCAATAGCAAGTACAA 57.735 33.333 0.00 0.00 41.91 2.41
227 228 7.386025 GCATCACTATGATCAATAGCAAGTACA 59.614 37.037 0.00 0.00 41.91 2.90
228 229 7.411264 CGCATCACTATGATCAATAGCAAGTAC 60.411 40.741 0.00 0.00 41.91 2.73
229 230 6.587608 CGCATCACTATGATCAATAGCAAGTA 59.412 38.462 0.00 0.00 41.91 2.24
230 231 5.407691 CGCATCACTATGATCAATAGCAAGT 59.592 40.000 0.00 0.00 41.91 3.16
231 232 5.670588 GCGCATCACTATGATCAATAGCAAG 60.671 44.000 0.30 0.00 41.91 4.01
232 233 4.152938 GCGCATCACTATGATCAATAGCAA 59.847 41.667 0.30 0.00 41.91 3.91
233 234 3.681417 GCGCATCACTATGATCAATAGCA 59.319 43.478 0.30 0.00 41.91 3.49
234 235 3.681417 TGCGCATCACTATGATCAATAGC 59.319 43.478 5.66 0.00 41.91 2.97
235 236 5.061933 GTCTGCGCATCACTATGATCAATAG 59.938 44.000 12.24 5.16 43.54 1.73
236 237 4.925646 GTCTGCGCATCACTATGATCAATA 59.074 41.667 12.24 0.00 34.28 1.90
237 238 3.744942 GTCTGCGCATCACTATGATCAAT 59.255 43.478 12.24 0.00 34.28 2.57
238 239 3.126073 GTCTGCGCATCACTATGATCAA 58.874 45.455 12.24 0.00 34.28 2.57
239 240 2.546584 GGTCTGCGCATCACTATGATCA 60.547 50.000 12.24 0.00 34.28 2.92
240 241 2.064762 GGTCTGCGCATCACTATGATC 58.935 52.381 12.24 0.00 34.28 2.92
241 242 1.270518 GGGTCTGCGCATCACTATGAT 60.271 52.381 12.24 0.00 37.65 2.45
242 243 0.104855 GGGTCTGCGCATCACTATGA 59.895 55.000 12.24 0.00 34.84 2.15
243 244 0.882042 GGGGTCTGCGCATCACTATG 60.882 60.000 12.24 0.00 36.09 2.23
244 245 1.447643 GGGGTCTGCGCATCACTAT 59.552 57.895 12.24 0.00 0.00 2.12
245 246 2.900273 GGGGTCTGCGCATCACTA 59.100 61.111 12.24 0.00 0.00 2.74
246 247 4.457496 CGGGGTCTGCGCATCACT 62.457 66.667 12.24 0.00 0.00 3.41
254 255 3.741476 CTGCTTTGCGGGGTCTGC 61.741 66.667 0.00 0.00 0.00 4.26
255 256 2.826777 ATCCTGCTTTGCGGGGTCTG 62.827 60.000 16.31 0.00 46.97 3.51
256 257 2.142292 AATCCTGCTTTGCGGGGTCT 62.142 55.000 16.31 0.84 46.97 3.85
257 258 0.393808 TAATCCTGCTTTGCGGGGTC 60.394 55.000 16.31 0.00 46.97 4.46
261 262 1.103398 CCCCTAATCCTGCTTTGCGG 61.103 60.000 0.00 0.00 34.23 5.69
262 263 0.394352 ACCCCTAATCCTGCTTTGCG 60.394 55.000 0.00 0.00 0.00 4.85
263 264 1.106285 CACCCCTAATCCTGCTTTGC 58.894 55.000 0.00 0.00 0.00 3.68
264 265 2.514458 ACACCCCTAATCCTGCTTTG 57.486 50.000 0.00 0.00 0.00 2.77
265 266 4.478686 AGATAACACCCCTAATCCTGCTTT 59.521 41.667 0.00 0.00 0.00 3.51
266 267 4.047883 AGATAACACCCCTAATCCTGCTT 58.952 43.478 0.00 0.00 0.00 3.91
267 268 3.648545 GAGATAACACCCCTAATCCTGCT 59.351 47.826 0.00 0.00 0.00 4.24
268 269 3.244596 GGAGATAACACCCCTAATCCTGC 60.245 52.174 0.00 0.00 0.00 4.85
269 270 3.973973 TGGAGATAACACCCCTAATCCTG 59.026 47.826 0.00 0.00 0.00 3.86
270 271 3.974642 GTGGAGATAACACCCCTAATCCT 59.025 47.826 0.00 0.00 32.80 3.24
271 272 3.244112 CGTGGAGATAACACCCCTAATCC 60.244 52.174 0.00 0.00 35.46 3.01
272 273 3.244112 CCGTGGAGATAACACCCCTAATC 60.244 52.174 0.00 0.00 35.46 1.75
273 274 2.704065 CCGTGGAGATAACACCCCTAAT 59.296 50.000 0.00 0.00 35.46 1.73
274 275 2.112998 CCGTGGAGATAACACCCCTAA 58.887 52.381 0.00 0.00 35.46 2.69
275 276 1.288633 TCCGTGGAGATAACACCCCTA 59.711 52.381 0.00 0.00 35.46 3.53
276 277 0.042131 TCCGTGGAGATAACACCCCT 59.958 55.000 0.00 0.00 35.46 4.79
277 278 0.464452 CTCCGTGGAGATAACACCCC 59.536 60.000 10.50 0.00 44.53 4.95
278 279 1.481871 TCTCCGTGGAGATAACACCC 58.518 55.000 14.57 0.00 45.26 4.61
293 294 3.787001 CCAGGTTCGGGGCTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
294 295 3.787001 CCCAGGTTCGGGGCTCTC 61.787 72.222 0.00 0.00 43.21 3.20
310 311 2.770132 AAACGACGCCGGGTCTTACC 62.770 60.000 17.48 0.00 43.79 2.85
311 312 1.373371 AAACGACGCCGGGTCTTAC 60.373 57.895 17.48 0.00 43.79 2.34
312 313 1.373246 CAAACGACGCCGGGTCTTA 60.373 57.895 17.48 0.00 43.79 2.10
313 314 2.663852 CAAACGACGCCGGGTCTT 60.664 61.111 17.48 8.42 43.79 3.01
320 321 2.759519 GAAAGACCGCAAACGACGCC 62.760 60.000 0.00 0.00 43.93 5.68
321 322 1.438222 GAAAGACCGCAAACGACGC 60.438 57.895 0.00 0.00 43.93 5.19
322 323 1.203313 GGAAAGACCGCAAACGACG 59.797 57.895 0.00 0.00 43.93 5.12
323 324 1.458445 GTAGGAAAGACCGCAAACGAC 59.542 52.381 0.00 0.00 43.93 4.34
324 325 1.342174 AGTAGGAAAGACCGCAAACGA 59.658 47.619 0.00 0.00 43.93 3.85
325 326 1.725164 GAGTAGGAAAGACCGCAAACG 59.275 52.381 0.00 0.00 44.74 3.60
326 327 2.074576 GGAGTAGGAAAGACCGCAAAC 58.925 52.381 0.00 0.00 44.74 2.93
327 328 1.002773 GGGAGTAGGAAAGACCGCAAA 59.997 52.381 0.00 0.00 44.74 3.68
328 329 0.611714 GGGAGTAGGAAAGACCGCAA 59.388 55.000 0.00 0.00 44.74 4.85
329 330 1.601419 CGGGAGTAGGAAAGACCGCA 61.601 60.000 0.00 0.00 44.74 5.69
330 331 1.141234 CGGGAGTAGGAAAGACCGC 59.859 63.158 0.00 0.00 44.74 5.68
331 332 1.141234 GCGGGAGTAGGAAAGACCG 59.859 63.158 0.00 0.00 44.74 4.79
332 333 0.903236 AAGCGGGAGTAGGAAAGACC 59.097 55.000 0.00 0.00 39.35 3.85
333 334 2.764439 AAAGCGGGAGTAGGAAAGAC 57.236 50.000 0.00 0.00 0.00 3.01
334 335 4.091549 TCTAAAAGCGGGAGTAGGAAAGA 58.908 43.478 0.00 0.00 0.00 2.52
335 336 4.434520 CTCTAAAAGCGGGAGTAGGAAAG 58.565 47.826 0.00 0.00 0.00 2.62
336 337 3.369157 GCTCTAAAAGCGGGAGTAGGAAA 60.369 47.826 0.00 0.00 42.21 3.13
337 338 2.167900 GCTCTAAAAGCGGGAGTAGGAA 59.832 50.000 0.00 0.00 42.21 3.36
338 339 1.755380 GCTCTAAAAGCGGGAGTAGGA 59.245 52.381 0.00 0.00 42.21 2.94
339 340 2.226602 GCTCTAAAAGCGGGAGTAGG 57.773 55.000 0.00 0.00 42.21 3.18
349 350 4.058817 AGAACGTTGTCAGGCTCTAAAAG 58.941 43.478 5.00 0.00 0.00 2.27
350 351 4.067972 AGAACGTTGTCAGGCTCTAAAA 57.932 40.909 5.00 0.00 0.00 1.52
351 352 3.746045 AGAACGTTGTCAGGCTCTAAA 57.254 42.857 5.00 0.00 0.00 1.85
352 353 5.047590 TCAATAGAACGTTGTCAGGCTCTAA 60.048 40.000 5.00 0.00 0.00 2.10
353 354 4.461431 TCAATAGAACGTTGTCAGGCTCTA 59.539 41.667 5.00 0.00 0.00 2.43
354 355 3.258372 TCAATAGAACGTTGTCAGGCTCT 59.742 43.478 5.00 0.00 0.00 4.09
355 356 3.368236 GTCAATAGAACGTTGTCAGGCTC 59.632 47.826 5.00 0.00 0.00 4.70
356 357 3.326747 GTCAATAGAACGTTGTCAGGCT 58.673 45.455 5.00 0.00 0.00 4.58
357 358 2.415512 GGTCAATAGAACGTTGTCAGGC 59.584 50.000 5.00 0.00 0.00 4.85
358 359 3.000727 GGGTCAATAGAACGTTGTCAGG 58.999 50.000 5.00 0.00 29.93 3.86
359 360 3.000727 GGGGTCAATAGAACGTTGTCAG 58.999 50.000 5.00 0.00 29.93 3.51
360 361 2.289819 GGGGGTCAATAGAACGTTGTCA 60.290 50.000 5.00 0.00 29.93 3.58
361 362 2.027469 AGGGGGTCAATAGAACGTTGTC 60.027 50.000 5.00 0.00 29.93 3.18
362 363 1.982958 AGGGGGTCAATAGAACGTTGT 59.017 47.619 5.00 3.64 29.93 3.32
363 364 2.781681 AGGGGGTCAATAGAACGTTG 57.218 50.000 5.00 0.00 29.93 4.10
364 365 3.175594 TGTAGGGGGTCAATAGAACGTT 58.824 45.455 0.00 0.00 29.93 3.99
365 366 2.823959 TGTAGGGGGTCAATAGAACGT 58.176 47.619 0.00 0.00 29.93 3.99
366 367 3.386726 TCATGTAGGGGGTCAATAGAACG 59.613 47.826 0.00 0.00 29.93 3.95
367 368 5.568620 ATCATGTAGGGGGTCAATAGAAC 57.431 43.478 0.00 0.00 0.00 3.01
368 369 6.239887 GCTAATCATGTAGGGGGTCAATAGAA 60.240 42.308 0.00 0.00 0.00 2.10
369 370 5.248477 GCTAATCATGTAGGGGGTCAATAGA 59.752 44.000 0.00 0.00 0.00 1.98
370 371 5.491982 GCTAATCATGTAGGGGGTCAATAG 58.508 45.833 0.00 0.00 0.00 1.73
371 372 4.288626 GGCTAATCATGTAGGGGGTCAATA 59.711 45.833 0.00 0.00 0.00 1.90
372 373 3.074538 GGCTAATCATGTAGGGGGTCAAT 59.925 47.826 0.00 0.00 0.00 2.57
373 374 2.441750 GGCTAATCATGTAGGGGGTCAA 59.558 50.000 0.00 0.00 0.00 3.18
374 375 2.054799 GGCTAATCATGTAGGGGGTCA 58.945 52.381 0.00 0.00 0.00 4.02
375 376 2.054799 TGGCTAATCATGTAGGGGGTC 58.945 52.381 0.00 0.00 0.00 4.46
376 377 1.774856 GTGGCTAATCATGTAGGGGGT 59.225 52.381 0.00 0.00 0.00 4.95
377 378 1.774254 TGTGGCTAATCATGTAGGGGG 59.226 52.381 0.00 0.00 0.00 5.40
378 379 3.795688 ATGTGGCTAATCATGTAGGGG 57.204 47.619 0.00 0.00 0.00 4.79
379 380 5.221303 CCAAAATGTGGCTAATCATGTAGGG 60.221 44.000 0.00 0.00 41.72 3.53
380 381 5.835257 CCAAAATGTGGCTAATCATGTAGG 58.165 41.667 0.00 0.00 41.72 3.18
394 395 3.627123 TCCTCGACATATGCCAAAATGTG 59.373 43.478 1.58 0.00 36.48 3.21
395 396 3.884895 TCCTCGACATATGCCAAAATGT 58.115 40.909 1.58 0.00 39.00 2.71
396 397 4.898829 TTCCTCGACATATGCCAAAATG 57.101 40.909 1.58 0.00 0.00 2.32
397 398 6.016276 GGTATTTCCTCGACATATGCCAAAAT 60.016 38.462 1.58 4.00 0.00 1.82
398 399 5.298276 GGTATTTCCTCGACATATGCCAAAA 59.702 40.000 1.58 0.00 0.00 2.44
399 400 4.819630 GGTATTTCCTCGACATATGCCAAA 59.180 41.667 1.58 0.00 0.00 3.28
400 401 4.141597 TGGTATTTCCTCGACATATGCCAA 60.142 41.667 1.58 0.00 37.07 4.52
401 402 3.389656 TGGTATTTCCTCGACATATGCCA 59.610 43.478 1.58 0.00 37.07 4.92
402 403 4.002906 TGGTATTTCCTCGACATATGCC 57.997 45.455 1.58 0.00 37.07 4.40
403 404 5.237815 TCATGGTATTTCCTCGACATATGC 58.762 41.667 1.58 0.00 37.07 3.14
404 405 8.253810 ACTATCATGGTATTTCCTCGACATATG 58.746 37.037 0.00 0.00 37.07 1.78
405 406 8.367660 ACTATCATGGTATTTCCTCGACATAT 57.632 34.615 0.00 0.00 37.07 1.78
406 407 7.776618 ACTATCATGGTATTTCCTCGACATA 57.223 36.000 0.00 0.00 37.07 2.29
407 408 6.672266 ACTATCATGGTATTTCCTCGACAT 57.328 37.500 0.00 0.00 37.07 3.06
408 409 6.776116 AGTACTATCATGGTATTTCCTCGACA 59.224 38.462 0.00 0.00 37.07 4.35
409 410 7.216973 AGTACTATCATGGTATTTCCTCGAC 57.783 40.000 0.00 0.00 37.07 4.20
410 411 7.120873 GCTAGTACTATCATGGTATTTCCTCGA 59.879 40.741 2.33 0.00 37.07 4.04
411 412 7.121463 AGCTAGTACTATCATGGTATTTCCTCG 59.879 40.741 2.33 0.00 37.07 4.63
412 413 8.356000 AGCTAGTACTATCATGGTATTTCCTC 57.644 38.462 2.33 0.00 37.07 3.71
413 414 8.174085 AGAGCTAGTACTATCATGGTATTTCCT 58.826 37.037 2.33 0.00 37.07 3.36
414 415 8.356000 AGAGCTAGTACTATCATGGTATTTCC 57.644 38.462 2.33 0.00 0.00 3.13
415 416 9.632807 CAAGAGCTAGTACTATCATGGTATTTC 57.367 37.037 2.33 0.00 0.00 2.17
416 417 9.148879 ACAAGAGCTAGTACTATCATGGTATTT 57.851 33.333 2.33 0.00 0.00 1.40
417 418 8.580720 CACAAGAGCTAGTACTATCATGGTATT 58.419 37.037 2.33 0.00 0.00 1.89
418 419 7.726291 ACACAAGAGCTAGTACTATCATGGTAT 59.274 37.037 2.33 0.00 0.00 2.73
419 420 7.061054 ACACAAGAGCTAGTACTATCATGGTA 58.939 38.462 2.33 0.00 0.00 3.25
420 421 5.894393 ACACAAGAGCTAGTACTATCATGGT 59.106 40.000 2.33 0.00 0.00 3.55
421 422 6.398234 ACACAAGAGCTAGTACTATCATGG 57.602 41.667 2.33 0.77 0.00 3.66
422 423 6.634837 CGAACACAAGAGCTAGTACTATCATG 59.365 42.308 2.33 5.26 0.00 3.07
423 424 6.542735 TCGAACACAAGAGCTAGTACTATCAT 59.457 38.462 2.33 0.00 0.00 2.45
424 425 5.878669 TCGAACACAAGAGCTAGTACTATCA 59.121 40.000 2.33 0.00 0.00 2.15
425 426 6.360844 TCGAACACAAGAGCTAGTACTATC 57.639 41.667 2.33 0.00 0.00 2.08
426 427 6.754702 TTCGAACACAAGAGCTAGTACTAT 57.245 37.500 2.33 0.00 0.00 2.12
427 428 6.150641 ACATTCGAACACAAGAGCTAGTACTA 59.849 38.462 0.00 1.89 0.00 1.82
428 429 5.047943 ACATTCGAACACAAGAGCTAGTACT 60.048 40.000 0.00 0.00 0.00 2.73
448 449 0.889186 GTTGGACCGGCTGTGACATT 60.889 55.000 0.00 0.00 0.00 2.71
456 457 2.799126 TGAATAATGTTGGACCGGCT 57.201 45.000 0.00 0.00 0.00 5.52
508 509 5.833131 TCTTCAGAAAGCACCCTTGTATTTT 59.167 36.000 0.00 0.00 32.18 1.82
562 566 2.776526 ACAGGGGCCCACTGTCAA 60.777 61.111 29.96 0.00 45.50 3.18
576 580 8.424274 TTGTATTCAGCTGTATAATGTGACAG 57.576 34.615 14.67 0.00 44.88 3.51
577 581 8.962884 ATTGTATTCAGCTGTATAATGTGACA 57.037 30.769 14.67 6.92 0.00 3.58
601 625 9.809096 CTCGTTCATATATGGTGCTTTCTATAT 57.191 33.333 12.78 0.00 0.00 0.86
602 626 9.020731 TCTCGTTCATATATGGTGCTTTCTATA 57.979 33.333 12.78 0.00 0.00 1.31
603 627 7.896811 TCTCGTTCATATATGGTGCTTTCTAT 58.103 34.615 12.78 0.00 0.00 1.98
615 639 9.653287 TCAAACTTGTTCTTCTCGTTCATATAT 57.347 29.630 0.00 0.00 0.00 0.86
626 650 5.440610 ACTGGTCATCAAACTTGTTCTTCT 58.559 37.500 0.00 0.00 0.00 2.85
631 655 6.998074 TCATAGAACTGGTCATCAAACTTGTT 59.002 34.615 0.00 0.00 0.00 2.83
910 939 6.611613 TGGAGAGGCTAGTTTATATGGATG 57.388 41.667 0.00 0.00 0.00 3.51
924 2968 2.366167 AGGGCGAATGGAGAGGCT 60.366 61.111 0.00 0.00 0.00 4.58
925 2969 2.203126 CAGGGCGAATGGAGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
927 2971 1.144936 GGACAGGGCGAATGGAGAG 59.855 63.158 0.00 0.00 0.00 3.20
933 2978 3.011517 AGGCTGGACAGGGCGAAT 61.012 61.111 1.01 0.00 0.00 3.34
934 2979 3.706373 GAGGCTGGACAGGGCGAA 61.706 66.667 0.00 0.00 0.00 4.70
1119 3174 1.592400 CGAGCCTGTGGACGAAGGTA 61.592 60.000 0.00 0.00 35.86 3.08
1761 3816 2.836636 AGGCAGACTCAGTCCAGATA 57.163 50.000 0.00 0.00 32.18 1.98
1989 4044 1.829222 CCGAAGTAGGGGTTGAGCTTA 59.171 52.381 0.00 0.00 0.00 3.09
2107 4162 2.025887 AGATGGCAAAGGTTAGGGAGTG 60.026 50.000 0.00 0.00 0.00 3.51
2317 4382 3.627123 TGAATCAGGCATTCCATACAACG 59.373 43.478 0.00 0.00 40.44 4.10
2485 4901 6.980051 AGAACCTTCGTTATGGATACAAAC 57.020 37.500 0.00 0.00 41.31 2.93
2499 4916 6.787085 AGACTAACAAATCAAGAACCTTCG 57.213 37.500 0.00 0.00 0.00 3.79
2529 4972 8.055181 ACCATCCATACTGATGAACTAACAAAT 58.945 33.333 2.70 0.00 43.94 2.32
2631 5091 7.619302 ACAAACCAATCATATTGGATACTGGTT 59.381 33.333 22.29 9.14 44.45 3.67
2662 5122 2.027192 ACCGAGACAAGTGGCATACAAT 60.027 45.455 0.00 0.00 0.00 2.71
2673 5134 4.511826 AGCTTAAAGACAAACCGAGACAAG 59.488 41.667 0.00 0.00 0.00 3.16
2681 5142 4.686091 GGCAATCAAGCTTAAAGACAAACC 59.314 41.667 0.00 0.00 34.17 3.27
2730 5192 4.356405 TGTCCTTCAAGAAGATTCAGCA 57.644 40.909 11.25 0.00 40.79 4.41
2766 5232 9.358406 ACAATATTGCCTCAGATTTCAATATCA 57.642 29.630 15.48 0.00 39.69 2.15
2771 5237 9.638239 GTTAAACAATATTGCCTCAGATTTCAA 57.362 29.630 15.48 1.18 0.00 2.69
2811 5279 8.621532 AAGCACTAACAGTAGATTTCAAATGA 57.378 30.769 0.00 0.00 0.00 2.57
2821 5289 6.995511 AACAAACAAAGCACTAACAGTAGA 57.004 33.333 0.00 0.00 0.00 2.59
2822 5290 7.690228 TGTAACAAACAAAGCACTAACAGTAG 58.310 34.615 0.00 0.00 34.29 2.57
3038 5663 3.313803 TGTAGTCGCTGTCAGAGATCATC 59.686 47.826 9.64 0.00 0.00 2.92
3168 5855 4.216687 GTCTCAGACTCGGGATAATCGATT 59.783 45.833 16.15 16.15 36.01 3.34
3180 5867 2.115595 GCATTCGATGTCTCAGACTCG 58.884 52.381 16.21 16.21 35.89 4.18
3196 5883 4.326504 AAACAGCTAGCAAAACAGCATT 57.673 36.364 18.83 0.00 40.36 3.56
3335 6025 6.254804 GGGAAAACAATATCAAACGGCATTAC 59.745 38.462 0.00 0.00 0.00 1.89
3337 6027 5.175127 GGGAAAACAATATCAAACGGCATT 58.825 37.500 0.00 0.00 0.00 3.56
3339 6029 3.574396 TGGGAAAACAATATCAAACGGCA 59.426 39.130 0.00 0.00 0.00 5.69
3340 6030 4.173256 CTGGGAAAACAATATCAAACGGC 58.827 43.478 0.00 0.00 0.00 5.68
3341 6031 5.385509 ACTGGGAAAACAATATCAAACGG 57.614 39.130 0.00 0.00 0.00 4.44
3343 6033 8.974408 GTACAAACTGGGAAAACAATATCAAAC 58.026 33.333 0.00 0.00 0.00 2.93
3344 6034 8.145122 GGTACAAACTGGGAAAACAATATCAAA 58.855 33.333 0.00 0.00 0.00 2.69
3345 6035 7.507616 AGGTACAAACTGGGAAAACAATATCAA 59.492 33.333 0.00 0.00 0.00 2.57
3346 6036 7.007723 AGGTACAAACTGGGAAAACAATATCA 58.992 34.615 0.00 0.00 0.00 2.15
3347 6037 7.393515 AGAGGTACAAACTGGGAAAACAATATC 59.606 37.037 0.00 0.00 0.00 1.63
3348 6038 7.238710 AGAGGTACAAACTGGGAAAACAATAT 58.761 34.615 0.00 0.00 0.00 1.28
3349 6039 6.607019 AGAGGTACAAACTGGGAAAACAATA 58.393 36.000 0.00 0.00 0.00 1.90
3350 6040 5.454966 AGAGGTACAAACTGGGAAAACAAT 58.545 37.500 0.00 0.00 0.00 2.71
3351 6041 4.862371 AGAGGTACAAACTGGGAAAACAA 58.138 39.130 0.00 0.00 0.00 2.83
3352 6042 4.513406 AGAGGTACAAACTGGGAAAACA 57.487 40.909 0.00 0.00 0.00 2.83
3353 6043 7.520451 AATAAGAGGTACAAACTGGGAAAAC 57.480 36.000 0.00 0.00 0.00 2.43
3354 6044 9.292195 CTAAATAAGAGGTACAAACTGGGAAAA 57.708 33.333 0.00 0.00 0.00 2.29
3355 6045 8.662255 TCTAAATAAGAGGTACAAACTGGGAAA 58.338 33.333 0.00 0.00 0.00 3.13
3356 6046 8.209802 TCTAAATAAGAGGTACAAACTGGGAA 57.790 34.615 0.00 0.00 0.00 3.97
3357 6047 7.801893 TCTAAATAAGAGGTACAAACTGGGA 57.198 36.000 0.00 0.00 0.00 4.37
3371 6061 3.264964 ACCAAACGGCCCTCTAAATAAGA 59.735 43.478 0.00 0.00 0.00 2.10
3372 6062 3.377172 CACCAAACGGCCCTCTAAATAAG 59.623 47.826 0.00 0.00 0.00 1.73
3373 6063 3.244981 ACACCAAACGGCCCTCTAAATAA 60.245 43.478 0.00 0.00 0.00 1.40
3374 6064 2.306512 ACACCAAACGGCCCTCTAAATA 59.693 45.455 0.00 0.00 0.00 1.40
3375 6065 1.074889 ACACCAAACGGCCCTCTAAAT 59.925 47.619 0.00 0.00 0.00 1.40
3376 6066 0.475044 ACACCAAACGGCCCTCTAAA 59.525 50.000 0.00 0.00 0.00 1.85
3377 6067 1.350071 TACACCAAACGGCCCTCTAA 58.650 50.000 0.00 0.00 0.00 2.10
3378 6068 1.350071 TTACACCAAACGGCCCTCTA 58.650 50.000 0.00 0.00 0.00 2.43
3379 6069 0.696501 ATTACACCAAACGGCCCTCT 59.303 50.000 0.00 0.00 0.00 3.69
3380 6070 0.808755 CATTACACCAAACGGCCCTC 59.191 55.000 0.00 0.00 0.00 4.30
3381 6071 1.248101 GCATTACACCAAACGGCCCT 61.248 55.000 0.00 0.00 0.00 5.19
3382 6072 1.214325 GCATTACACCAAACGGCCC 59.786 57.895 0.00 0.00 0.00 5.80
3383 6073 1.214325 GGCATTACACCAAACGGCC 59.786 57.895 0.00 0.00 0.00 6.13
3384 6074 0.530288 ATGGCATTACACCAAACGGC 59.470 50.000 0.00 0.00 41.49 5.68
3385 6075 1.815613 TCATGGCATTACACCAAACGG 59.184 47.619 0.00 0.00 41.49 4.44
3386 6076 3.119531 ACATCATGGCATTACACCAAACG 60.120 43.478 0.00 0.00 41.49 3.60
3439 6129 7.150783 ACCAAGTTCAGAAAATATCAGCTTC 57.849 36.000 0.00 0.00 0.00 3.86
3535 6226 0.890996 CAACCTGGAGCTTTTCGCCT 60.891 55.000 0.00 0.00 40.39 5.52
3537 6228 0.519077 CTCAACCTGGAGCTTTTCGC 59.481 55.000 0.00 0.00 39.57 4.70
3538 6229 2.072298 CTCTCAACCTGGAGCTTTTCG 58.928 52.381 0.00 0.00 34.84 3.46
3553 6245 4.750021 ATGCTCAGATTACTTGCTCTCA 57.250 40.909 0.00 0.00 0.00 3.27
3557 6249 7.818446 CAGATATGTATGCTCAGATTACTTGCT 59.182 37.037 0.00 0.00 0.00 3.91
3558 6250 7.816513 TCAGATATGTATGCTCAGATTACTTGC 59.183 37.037 0.00 0.00 0.00 4.01
3646 6338 2.957680 ACAGATCCATTTTGTGTGTGCA 59.042 40.909 0.00 0.00 0.00 4.57
3648 6340 3.365264 CCGACAGATCCATTTTGTGTGTG 60.365 47.826 0.00 0.00 0.00 3.82
3649 6341 2.813754 CCGACAGATCCATTTTGTGTGT 59.186 45.455 0.00 0.00 0.00 3.72
3650 6342 2.162208 CCCGACAGATCCATTTTGTGTG 59.838 50.000 0.00 0.00 0.00 3.82
3651 6343 2.224769 ACCCGACAGATCCATTTTGTGT 60.225 45.455 0.00 0.00 0.00 3.72
3652 6344 2.436417 ACCCGACAGATCCATTTTGTG 58.564 47.619 0.00 0.00 0.00 3.33
3653 6345 2.879103 ACCCGACAGATCCATTTTGT 57.121 45.000 0.00 0.00 0.00 2.83
3654 6346 3.758554 AGAAACCCGACAGATCCATTTTG 59.241 43.478 0.00 0.00 0.00 2.44
3655 6347 4.010349 GAGAAACCCGACAGATCCATTTT 58.990 43.478 0.00 0.00 0.00 1.82
3656 6348 3.610911 GAGAAACCCGACAGATCCATTT 58.389 45.455 0.00 0.00 0.00 2.32
3657 6349 2.092914 GGAGAAACCCGACAGATCCATT 60.093 50.000 0.00 0.00 0.00 3.16
3658 6350 1.486726 GGAGAAACCCGACAGATCCAT 59.513 52.381 0.00 0.00 0.00 3.41
3659 6351 0.902531 GGAGAAACCCGACAGATCCA 59.097 55.000 0.00 0.00 0.00 3.41
3660 6352 3.762674 GGAGAAACCCGACAGATCC 57.237 57.895 0.00 0.00 0.00 3.36
3671 6363 4.096532 GCTTGGTTAGCTAATGGGAGAAAC 59.903 45.833 9.88 0.00 46.77 2.78
3714 6406 5.700402 AACTAGACCCAAGTGATTGCTAT 57.300 39.130 0.00 0.00 0.00 2.97
3732 6424 3.189910 TCTGCGCGACTCTTAGAAAACTA 59.810 43.478 12.10 0.00 0.00 2.24
3748 6443 0.038159 ACAGGACTGTTACTCTGCGC 60.038 55.000 0.00 0.00 41.83 6.09
3769 6464 2.434359 CCCGGGAAGCTCGTGTTC 60.434 66.667 18.48 0.00 0.00 3.18
3788 6483 1.210413 CTGTGGACACCGACTCGAG 59.790 63.158 11.84 11.84 0.00 4.04
3809 6504 6.150140 GCTTGAATGTGAATTCCAGACTACTT 59.850 38.462 2.27 0.00 0.00 2.24
3815 6510 3.765381 TGGCTTGAATGTGAATTCCAGA 58.235 40.909 2.27 0.00 0.00 3.86
3864 6559 7.936847 TGTCAACCAGTCTCTGTATAATGTTTT 59.063 33.333 0.00 0.00 0.00 2.43
3882 6577 3.815809 CCTTGGTAAACTCTGTCAACCA 58.184 45.455 0.00 0.00 38.42 3.67
3900 6595 0.668535 GTTTCAGTTTGAGCGGCCTT 59.331 50.000 0.00 0.00 0.00 4.35
3902 6597 0.668535 AAGTTTCAGTTTGAGCGGCC 59.331 50.000 0.00 0.00 0.00 6.13
3961 6656 0.400594 AAGAGGTTGTAAAGGGCGCT 59.599 50.000 7.64 0.00 0.00 5.92
4014 6709 3.808728 TCTTAGAATCCTGCCGAATTGG 58.191 45.455 0.00 0.00 42.50 3.16
4055 6750 1.414919 TGTAGTTTCCCTCGCTGTTGT 59.585 47.619 0.00 0.00 0.00 3.32
4056 6751 1.798813 GTGTAGTTTCCCTCGCTGTTG 59.201 52.381 0.00 0.00 0.00 3.33
4057 6752 1.270678 GGTGTAGTTTCCCTCGCTGTT 60.271 52.381 0.00 0.00 0.00 3.16
4058 6753 0.320697 GGTGTAGTTTCCCTCGCTGT 59.679 55.000 0.00 0.00 0.00 4.40
4059 6754 0.608640 AGGTGTAGTTTCCCTCGCTG 59.391 55.000 0.00 0.00 0.00 5.18
4060 6755 0.896226 GAGGTGTAGTTTCCCTCGCT 59.104 55.000 0.00 0.00 35.79 4.93
4061 6756 3.437746 GAGGTGTAGTTTCCCTCGC 57.562 57.895 0.00 0.00 35.79 5.03
4063 6758 3.769844 TGATCAGAGGTGTAGTTTCCCTC 59.230 47.826 0.00 0.00 44.22 4.30
4064 6759 3.791320 TGATCAGAGGTGTAGTTTCCCT 58.209 45.455 0.00 0.00 0.00 4.20
4065 6760 4.223032 TCTTGATCAGAGGTGTAGTTTCCC 59.777 45.833 0.00 0.00 0.00 3.97
4066 6761 5.407407 TCTTGATCAGAGGTGTAGTTTCC 57.593 43.478 0.00 0.00 0.00 3.13
4067 6762 9.606631 AATATTCTTGATCAGAGGTGTAGTTTC 57.393 33.333 0.00 0.00 31.12 2.78
4068 6763 9.965902 AAATATTCTTGATCAGAGGTGTAGTTT 57.034 29.630 0.00 0.00 31.12 2.66
4069 6764 9.965902 AAAATATTCTTGATCAGAGGTGTAGTT 57.034 29.630 0.00 0.00 31.12 2.24
4070 6765 9.965902 AAAAATATTCTTGATCAGAGGTGTAGT 57.034 29.630 0.00 0.00 31.12 2.73
4073 6768 8.883731 CGTAAAAATATTCTTGATCAGAGGTGT 58.116 33.333 0.00 0.00 31.12 4.16
4074 6769 8.338259 CCGTAAAAATATTCTTGATCAGAGGTG 58.662 37.037 0.00 0.00 31.12 4.00
4075 6770 8.047310 ACCGTAAAAATATTCTTGATCAGAGGT 58.953 33.333 0.00 0.00 31.12 3.85
4076 6771 8.438676 ACCGTAAAAATATTCTTGATCAGAGG 57.561 34.615 0.00 0.00 31.12 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.