Multiple sequence alignment - TraesCS1B01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G274600 chr1B 100.000 7690 0 0 1 7690 481869723 481862034 0.000000e+00 14201.0
1 TraesCS1B01G274600 chr1B 84.211 76 8 3 7605 7677 209135570 209135644 3.850000e-08 71.3
2 TraesCS1B01G274600 chr1D 94.600 5000 154 40 2449 7355 359842938 359837962 0.000000e+00 7631.0
3 TraesCS1B01G274600 chr1D 95.035 1430 59 10 1026 2452 359844398 359842978 0.000000e+00 2237.0
4 TraesCS1B01G274600 chr1D 95.395 304 4 2 696 989 359845054 359844751 6.980000e-130 475.0
5 TraesCS1B01G274600 chr1D 92.537 268 16 2 7352 7615 359835324 359835057 1.570000e-101 381.0
6 TraesCS1B01G274600 chr1D 79.304 575 58 24 1 519 63896646 63896077 5.710000e-91 346.0
7 TraesCS1B01G274600 chr1D 100.000 28 0 0 7612 7639 248113963 248113990 1.400000e-02 52.8
8 TraesCS1B01G274600 chr1A 93.131 4557 257 34 2449 6978 459312226 459307699 0.000000e+00 6630.0
9 TraesCS1B01G274600 chr1A 93.270 1055 51 13 781 1817 459313883 459312831 0.000000e+00 1537.0
10 TraesCS1B01G274600 chr1A 92.759 580 28 8 1874 2451 459312833 459312266 0.000000e+00 826.0
11 TraesCS1B01G274600 chr1A 85.556 270 22 12 254 511 129001476 129001740 4.570000e-67 267.0
12 TraesCS1B01G274600 chr1A 90.141 142 13 1 550 690 129001823 129001964 4.740000e-42 183.0
13 TraesCS1B01G274600 chr1A 96.364 55 2 0 7138 7192 459307485 459307431 2.960000e-14 91.6
14 TraesCS1B01G274600 chr1A 86.076 79 9 2 4896 4973 494445067 494445144 4.950000e-12 84.2
15 TraesCS1B01G274600 chr2D 88.261 460 36 9 79 523 438246534 438246078 1.140000e-147 534.0
16 TraesCS1B01G274600 chr7D 79.945 733 83 44 1 692 379773937 379774646 1.500000e-131 481.0
17 TraesCS1B01G274600 chr7D 82.377 244 29 10 6 243 546774962 546774727 4.710000e-47 200.0
18 TraesCS1B01G274600 chr5D 83.553 456 33 11 1 416 520582906 520583359 9.360000e-104 388.0
19 TraesCS1B01G274600 chr5D 87.383 214 17 7 254 463 27263988 27264195 3.590000e-58 237.0
20 TraesCS1B01G274600 chr2B 77.574 709 114 19 1718 2398 23373938 23374629 3.370000e-103 387.0
21 TraesCS1B01G274600 chr2B 81.600 250 31 13 1 243 446063257 446063016 7.880000e-45 193.0
22 TraesCS1B01G274600 chr4B 80.686 554 42 19 1 524 605797994 605797476 3.390000e-98 370.0
23 TraesCS1B01G274600 chr4B 82.305 243 33 9 7 244 364932340 364932103 1.310000e-47 202.0
24 TraesCS1B01G274600 chr4B 90.972 144 13 0 548 691 605797408 605797265 2.190000e-45 195.0
25 TraesCS1B01G274600 chr2A 81.466 491 43 18 62 524 90511783 90511313 7.340000e-95 359.0
26 TraesCS1B01G274600 chr6A 81.184 473 48 12 59 491 144498952 144499423 7.390000e-90 342.0
27 TraesCS1B01G274600 chr6A 83.884 242 30 8 5 242 595412683 595412919 1.000000e-53 222.0
28 TraesCS1B01G274600 chr4A 79.406 471 57 30 1 442 526645949 526645490 5.830000e-76 296.0
29 TraesCS1B01G274600 chr3A 81.327 407 36 23 1 371 502516256 502515854 2.100000e-75 294.0
30 TraesCS1B01G274600 chr3A 93.007 143 10 0 548 690 391883902 391884044 7.820000e-50 209.0
31 TraesCS1B01G274600 chr3A 92.308 143 11 0 548 690 391885021 391885163 3.640000e-48 204.0
32 TraesCS1B01G274600 chr7B 88.073 218 22 3 248 463 501942161 501942376 9.900000e-64 255.0
33 TraesCS1B01G274600 chr7B 87.560 209 22 3 249 455 501940851 501941057 9.970000e-59 239.0
34 TraesCS1B01G274600 chr7B 90.210 143 13 1 551 693 708506237 708506096 1.320000e-42 185.0
35 TraesCS1B01G274600 chr3D 88.208 212 18 6 254 463 328015357 328015151 5.960000e-61 246.0
36 TraesCS1B01G274600 chr5B 82.773 238 29 11 9 240 678299236 678299467 1.310000e-47 202.0
37 TraesCS1B01G274600 chr6D 92.199 141 10 1 557 696 313029066 313028926 1.690000e-46 198.0
38 TraesCS1B01G274600 chr3B 90.541 148 13 1 550 696 734595732 734595585 2.190000e-45 195.0
39 TraesCS1B01G274600 chr5A 90.210 143 10 2 550 692 552555767 552555905 4.740000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G274600 chr1B 481862034 481869723 7689 True 14201.00 14201 100.00000 1 7690 1 chr1B.!!$R1 7689
1 TraesCS1B01G274600 chr1D 359835057 359845054 9997 True 2681.00 7631 94.39175 696 7615 4 chr1D.!!$R2 6919
2 TraesCS1B01G274600 chr1D 63896077 63896646 569 True 346.00 346 79.30400 1 519 1 chr1D.!!$R1 518
3 TraesCS1B01G274600 chr1A 459307431 459313883 6452 True 2271.15 6630 93.88100 781 7192 4 chr1A.!!$R1 6411
4 TraesCS1B01G274600 chr7D 379773937 379774646 709 False 481.00 481 79.94500 1 692 1 chr7D.!!$F1 691
5 TraesCS1B01G274600 chr2B 23373938 23374629 691 False 387.00 387 77.57400 1718 2398 1 chr2B.!!$F1 680
6 TraesCS1B01G274600 chr4B 605797265 605797994 729 True 282.50 370 85.82900 1 691 2 chr4B.!!$R2 690
7 TraesCS1B01G274600 chr3A 391883902 391885163 1261 False 206.50 209 92.65750 548 690 2 chr3A.!!$F1 142
8 TraesCS1B01G274600 chr7B 501940851 501942376 1525 False 247.00 255 87.81650 248 463 2 chr7B.!!$F1 215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 2021 0.180406 GCCCACGATGTATGAAGGGT 59.820 55.000 0.00 0.0 38.56 4.34 F
989 2264 1.309347 CTCCTCAGGAGCCTCCTCA 59.691 63.158 11.26 0.0 45.66 3.86 F
1823 3420 1.600638 TCTGCTGTCCAGATGCCTG 59.399 57.895 0.00 0.0 45.44 4.85 F
2488 4159 2.749621 GTCACATGCCTAGGAACTTTGG 59.250 50.000 14.75 0.0 41.75 3.28 F
3912 5607 0.101759 CTTGCCCTGAATGCCAATCG 59.898 55.000 0.00 0.0 0.00 3.34 F
4211 5912 3.024547 CCAGACTCCTCTTATCGGTTCA 58.975 50.000 0.00 0.0 0.00 3.18 F
6027 7732 0.880278 TTCGTGTGCTGCTTGACTCC 60.880 55.000 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 4146 0.991920 TGGCCTCCAAAGTTCCTAGG 59.008 55.000 3.32 0.82 0.00 3.02 R
2809 4503 2.672961 TAGGACGCCTGAAGTTCATG 57.327 50.000 5.91 4.82 34.61 3.07 R
3774 5469 1.268899 ACACCTGACCTTCGAGTAACG 59.731 52.381 0.00 0.00 44.09 3.18 R
4158 5856 1.595993 TTTCCTCTCCTGGACGAGCG 61.596 60.000 14.17 9.66 35.58 5.03 R
5169 6871 1.002502 AGCTTACCTTCCGCCAACC 60.003 57.895 0.00 0.00 0.00 3.77 R
6154 7870 0.955428 GAGAACTGCATTCGGTGGCA 60.955 55.000 0.00 0.00 42.69 4.92 R
7192 8985 0.034089 ATGCTTGGGTGGAGTAAGCC 60.034 55.000 0.00 0.00 44.60 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 93 7.062848 GGAAGCACAAACATTTTATGAAAACG 58.937 34.615 0.00 0.00 32.37 3.60
57 95 8.635877 AAGCACAAACATTTTATGAAAACGTA 57.364 26.923 0.00 0.00 32.37 3.57
58 96 8.635877 AGCACAAACATTTTATGAAAACGTAA 57.364 26.923 0.00 0.00 32.37 3.18
59 97 9.088512 AGCACAAACATTTTATGAAAACGTAAA 57.911 25.926 0.00 0.00 32.37 2.01
60 98 9.856803 GCACAAACATTTTATGAAAACGTAAAT 57.143 25.926 0.00 0.00 32.37 1.40
111 149 7.693536 CAGCATTTCAAAGGTTTTGAACTTTTC 59.306 33.333 14.55 5.35 38.44 2.29
118 157 8.527810 TCAAAGGTTTTGAACTTTTCTGTGTAT 58.472 29.630 1.98 0.00 38.44 2.29
270 1455 6.198216 AGGAACATTTTTCGAAAATGTGAACG 59.802 34.615 28.56 11.78 46.62 3.95
271 1456 5.309652 ACATTTTTCGAAAATGTGAACGC 57.690 34.783 28.56 0.00 45.86 4.84
418 1623 9.462606 AGAAAAGGAGTAAAAAGAAAGAACAGA 57.537 29.630 0.00 0.00 0.00 3.41
431 1636 8.964476 AAGAAAGAACAGAATAAGACTGTGAA 57.036 30.769 0.00 0.00 46.01 3.18
432 1637 8.600449 AGAAAGAACAGAATAAGACTGTGAAG 57.400 34.615 0.00 0.00 46.01 3.02
433 1638 8.424918 AGAAAGAACAGAATAAGACTGTGAAGA 58.575 33.333 0.00 0.00 46.01 2.87
438 1643 9.439537 GAACAGAATAAGACTGTGAAGAAAAAC 57.560 33.333 0.00 0.00 46.01 2.43
439 1644 7.931275 ACAGAATAAGACTGTGAAGAAAAACC 58.069 34.615 0.00 0.00 45.19 3.27
441 1646 8.072567 CAGAATAAGACTGTGAAGAAAAACCAG 58.927 37.037 0.00 0.00 0.00 4.00
442 1647 7.775561 AGAATAAGACTGTGAAGAAAAACCAGT 59.224 33.333 0.00 0.00 38.98 4.00
444 1649 6.927294 AAGACTGTGAAGAAAAACCAGTAG 57.073 37.500 0.00 0.00 36.56 2.57
445 1650 6.235231 AGACTGTGAAGAAAAACCAGTAGA 57.765 37.500 0.00 0.00 36.56 2.59
447 1652 7.110155 AGACTGTGAAGAAAAACCAGTAGAAA 58.890 34.615 0.00 0.00 36.56 2.52
448 1653 7.281100 AGACTGTGAAGAAAAACCAGTAGAAAG 59.719 37.037 0.00 0.00 36.56 2.62
451 1656 7.758495 TGTGAAGAAAAACCAGTAGAAAGAAC 58.242 34.615 0.00 0.00 0.00 3.01
455 1660 9.634163 GAAGAAAAACCAGTAGAAAGAACAAAA 57.366 29.630 0.00 0.00 0.00 2.44
456 1661 9.639601 AAGAAAAACCAGTAGAAAGAACAAAAG 57.360 29.630 0.00 0.00 0.00 2.27
457 1662 8.803235 AGAAAAACCAGTAGAAAGAACAAAAGT 58.197 29.630 0.00 0.00 0.00 2.66
459 1664 9.772973 AAAAACCAGTAGAAAGAACAAAAGTTT 57.227 25.926 0.00 0.00 0.00 2.66
460 1665 9.772973 AAAACCAGTAGAAAGAACAAAAGTTTT 57.227 25.926 0.00 0.00 0.00 2.43
461 1666 9.772973 AAACCAGTAGAAAGAACAAAAGTTTTT 57.227 25.926 0.00 0.00 0.00 1.94
481 1686 3.810310 TTGGAATTTCCGCAAACTTGT 57.190 38.095 10.79 0.00 40.17 3.16
482 1687 3.810310 TGGAATTTCCGCAAACTTGTT 57.190 38.095 10.79 0.00 40.17 2.83
486 1691 6.106673 TGGAATTTCCGCAAACTTGTTTTAA 58.893 32.000 10.79 0.00 40.17 1.52
487 1692 6.256757 TGGAATTTCCGCAAACTTGTTTTAAG 59.743 34.615 10.79 0.00 40.17 1.85
488 1693 6.256975 GGAATTTCCGCAAACTTGTTTTAAGT 59.743 34.615 0.00 0.00 0.00 2.24
491 1696 7.422878 TTTCCGCAAACTTGTTTTAAGTTTT 57.577 28.000 13.37 0.14 45.20 2.43
492 1697 6.396459 TCCGCAAACTTGTTTTAAGTTTTG 57.604 33.333 13.37 9.82 45.20 2.44
493 1698 5.927115 TCCGCAAACTTGTTTTAAGTTTTGT 59.073 32.000 13.37 0.00 45.20 2.83
494 1699 6.089685 TCCGCAAACTTGTTTTAAGTTTTGTC 59.910 34.615 13.37 6.85 45.20 3.18
496 1701 6.399144 CGCAAACTTGTTTTAAGTTTTGTCGT 60.399 34.615 13.37 0.00 45.20 4.34
498 1703 7.265286 GCAAACTTGTTTTAAGTTTTGTCGTTG 59.735 33.333 13.37 4.95 45.20 4.10
499 1704 6.384178 ACTTGTTTTAAGTTTTGTCGTTGC 57.616 33.333 0.00 0.00 0.00 4.17
502 1707 7.170151 ACTTGTTTTAAGTTTTGTCGTTGCTTT 59.830 29.630 0.00 0.00 0.00 3.51
503 1708 7.409465 TGTTTTAAGTTTTGTCGTTGCTTTT 57.591 28.000 0.00 0.00 0.00 2.27
504 1709 7.284351 TGTTTTAAGTTTTGTCGTTGCTTTTG 58.716 30.769 0.00 0.00 0.00 2.44
505 1710 6.396459 TTTAAGTTTTGTCGTTGCTTTTGG 57.604 33.333 0.00 0.00 0.00 3.28
508 1713 4.311606 AGTTTTGTCGTTGCTTTTGGTTT 58.688 34.783 0.00 0.00 0.00 3.27
509 1714 4.387559 AGTTTTGTCGTTGCTTTTGGTTTC 59.612 37.500 0.00 0.00 0.00 2.78
510 1715 3.859411 TTGTCGTTGCTTTTGGTTTCT 57.141 38.095 0.00 0.00 0.00 2.52
513 1718 3.690139 TGTCGTTGCTTTTGGTTTCTGTA 59.310 39.130 0.00 0.00 0.00 2.74
514 1719 4.156190 TGTCGTTGCTTTTGGTTTCTGTAA 59.844 37.500 0.00 0.00 0.00 2.41
515 1720 4.733405 GTCGTTGCTTTTGGTTTCTGTAAG 59.267 41.667 0.00 0.00 0.00 2.34
519 1724 6.237463 CGTTGCTTTTGGTTTCTGTAAGTTTC 60.237 38.462 0.00 0.00 33.76 2.78
520 1725 5.336744 TGCTTTTGGTTTCTGTAAGTTTCG 58.663 37.500 0.00 0.00 33.76 3.46
521 1726 4.206404 GCTTTTGGTTTCTGTAAGTTTCGC 59.794 41.667 0.00 0.00 33.76 4.70
522 1727 4.966965 TTTGGTTTCTGTAAGTTTCGCA 57.033 36.364 0.00 0.00 33.76 5.10
524 1729 4.742438 TGGTTTCTGTAAGTTTCGCATC 57.258 40.909 0.00 0.00 33.76 3.91
526 1731 3.424433 GGTTTCTGTAAGTTTCGCATCCG 60.424 47.826 0.00 0.00 33.76 4.18
527 1732 1.355971 TCTGTAAGTTTCGCATCCGC 58.644 50.000 0.00 0.00 33.76 5.54
528 1733 1.075542 CTGTAAGTTTCGCATCCGCA 58.924 50.000 0.00 0.00 38.40 5.69
529 1734 1.061131 CTGTAAGTTTCGCATCCGCAG 59.939 52.381 0.00 0.00 38.40 5.18
542 1747 2.734723 CGCAGGTCAGTCACGGTG 60.735 66.667 0.56 0.56 0.00 4.94
543 1748 2.357517 GCAGGTCAGTCACGGTGG 60.358 66.667 8.50 0.00 0.00 4.61
544 1749 2.357517 CAGGTCAGTCACGGTGGC 60.358 66.667 4.16 4.16 0.00 5.01
546 1751 1.228769 AGGTCAGTCACGGTGGCTA 60.229 57.895 15.86 1.49 26.99 3.93
547 1752 0.614979 AGGTCAGTCACGGTGGCTAT 60.615 55.000 15.86 0.00 26.99 2.97
549 1754 0.525668 GTCAGTCACGGTGGCTATCG 60.526 60.000 15.86 0.00 36.23 2.92
550 1755 1.226974 CAGTCACGGTGGCTATCGG 60.227 63.158 15.86 0.00 33.84 4.18
551 1756 1.681327 AGTCACGGTGGCTATCGGT 60.681 57.895 14.61 0.00 33.84 4.69
561 1826 0.680061 GGCTATCGGTTCGATCCCTT 59.320 55.000 6.94 0.00 43.45 3.95
700 1965 3.596362 GGAATTCCCTCCTGTTGGG 57.404 57.895 14.03 0.00 45.90 4.12
756 2021 0.180406 GCCCACGATGTATGAAGGGT 59.820 55.000 0.00 0.00 38.56 4.34
989 2264 1.309347 CTCCTCAGGAGCCTCCTCA 59.691 63.158 11.26 0.00 45.66 3.86
1014 2289 4.929707 CGGATGGTAAGCGGCCCC 62.930 72.222 0.00 0.00 0.00 5.80
1036 2627 2.122189 CCCCATCCTCCCCTCTCC 60.122 72.222 0.00 0.00 0.00 3.71
1359 2950 3.757493 ACGACTACCTCAAGTAAGACAGG 59.243 47.826 0.00 0.00 0.00 4.00
1484 3075 3.552604 TGGTTATTCAGCGACTTTTGC 57.447 42.857 0.00 0.00 0.00 3.68
1665 3261 8.494433 TCTGCTAACCTCCTGTATTGAATATTT 58.506 33.333 0.00 0.00 0.00 1.40
1671 3267 8.762481 ACCTCCTGTATTGAATATTTAAACCC 57.238 34.615 0.00 0.00 0.00 4.11
1676 3272 8.296713 CCTGTATTGAATATTTAAACCCGATGG 58.703 37.037 0.00 0.00 37.80 3.51
1693 3289 4.438744 CCGATGGTTCTGCTTGGTAATTTC 60.439 45.833 0.00 0.00 0.00 2.17
1799 3396 7.451255 TGGTTGTCTGAATAGGATTTGTTGATT 59.549 33.333 0.00 0.00 0.00 2.57
1801 3398 9.774742 GTTGTCTGAATAGGATTTGTTGATTAC 57.225 33.333 0.00 0.00 0.00 1.89
1823 3420 1.600638 TCTGCTGTCCAGATGCCTG 59.399 57.895 0.00 0.00 45.44 4.85
1838 3435 2.778299 TGCCTGGTATTGTTCAGTCAC 58.222 47.619 0.00 0.00 0.00 3.67
1858 3459 7.116376 CAGTCACGTACACAAATTAACTGATCT 59.884 37.037 0.00 0.00 34.89 2.75
1945 3546 8.028354 TGGAAACTGCATTGTTGAGTAATAATG 58.972 33.333 0.00 0.00 43.90 1.90
1975 3576 8.568676 TTGCTATACAGTTTGCTATTTGGTTA 57.431 30.769 0.00 0.00 0.00 2.85
2089 3693 6.754675 GTGAAGTTCTTGCTAGTCCTCTTATC 59.245 42.308 4.17 0.00 0.00 1.75
2090 3694 5.862678 AGTTCTTGCTAGTCCTCTTATCC 57.137 43.478 0.00 0.00 0.00 2.59
2100 3726 3.523972 AGTCCTCTTATCCTTTTCCACCC 59.476 47.826 0.00 0.00 0.00 4.61
2304 3930 3.749954 GCTTCATGATCAGGGTAATGGCT 60.750 47.826 7.64 0.00 0.00 4.75
2335 3961 9.654663 ACACAGTTCTTATTTTCTATGGAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
2401 4028 5.474532 TCTGTTTGAATTGCTGCTTGAGTAT 59.525 36.000 0.00 0.00 0.00 2.12
2461 4132 9.387123 GTGTAGAATGTTCTTTCAAGTTTGATC 57.613 33.333 0.00 0.00 38.70 2.92
2475 4146 4.726416 AGTTTGATCGAAATGTCACATGC 58.274 39.130 0.00 0.00 0.00 4.06
2488 4159 2.749621 GTCACATGCCTAGGAACTTTGG 59.250 50.000 14.75 0.00 41.75 3.28
2497 4168 2.808906 AGGAACTTTGGAGGCCATAC 57.191 50.000 5.01 0.00 27.25 2.39
2507 4178 4.183223 TGGAGGCCATACAATAATGCTT 57.817 40.909 5.01 0.00 0.00 3.91
2508 4179 4.545678 TGGAGGCCATACAATAATGCTTT 58.454 39.130 5.01 0.00 0.00 3.51
2509 4180 4.584325 TGGAGGCCATACAATAATGCTTTC 59.416 41.667 5.01 0.00 0.00 2.62
2510 4181 4.021981 GGAGGCCATACAATAATGCTTTCC 60.022 45.833 5.01 0.00 0.00 3.13
2511 4182 3.897505 AGGCCATACAATAATGCTTTCCC 59.102 43.478 5.01 0.00 0.00 3.97
2512 4183 3.006859 GGCCATACAATAATGCTTTCCCC 59.993 47.826 0.00 0.00 0.00 4.81
2513 4184 3.006859 GCCATACAATAATGCTTTCCCCC 59.993 47.826 0.00 0.00 0.00 5.40
2590 4276 8.044060 TGTCTCCATTTATCAAAAGATGTGAC 57.956 34.615 0.00 0.00 0.00 3.67
2613 4299 9.613428 TGACGTATCTTCAAAAATTAGGATCAT 57.387 29.630 0.00 0.00 0.00 2.45
2664 4358 7.500227 TGGATTTGCTTGAGGATCTTAGTTATG 59.500 37.037 0.00 0.00 34.92 1.90
2672 4366 8.798975 TTGAGGATCTTAGTTATGGTATCCTT 57.201 34.615 0.00 0.00 42.49 3.36
2673 4367 8.195165 TGAGGATCTTAGTTATGGTATCCTTG 57.805 38.462 0.00 0.00 42.49 3.61
2754 4448 8.449251 ACATAAAAAGCAAATGTTTGGATGTT 57.551 26.923 7.51 0.00 38.57 2.71
2809 4503 3.808466 TGTGCAGATACAGATGAGGAC 57.192 47.619 0.00 0.00 0.00 3.85
2929 4623 3.024547 TCCTAGTTCACCTGGAAGATCG 58.975 50.000 0.00 0.00 35.82 3.69
3053 4747 3.670055 GCATTTGGTGTTGATTCTGTTCG 59.330 43.478 0.00 0.00 0.00 3.95
3411 5105 8.976353 TGGTTATAACAATTGGCATCTTGTAAT 58.024 29.630 17.16 5.14 34.61 1.89
3680 5374 9.620660 GTAAAGAACATACCTTTTTACCATGTG 57.379 33.333 0.00 0.00 35.65 3.21
3774 5469 2.122783 TGATTCGAATTGGGGGTGTC 57.877 50.000 12.81 0.00 0.00 3.67
3870 5565 2.613223 GGGTCCTTTCTTCCAGAACTCG 60.613 54.545 0.00 0.00 33.26 4.18
3912 5607 0.101759 CTTGCCCTGAATGCCAATCG 59.898 55.000 0.00 0.00 0.00 3.34
4011 5709 7.145323 TGCATGATATTGATCTTTCTGCATTG 58.855 34.615 0.00 0.00 33.30 2.82
4158 5856 5.585445 ACTTCTGAATGATCTGATTGACTGC 59.415 40.000 0.00 0.00 34.06 4.40
4198 5899 6.094186 GGAAATTGTAATGTTCTCCAGACTCC 59.906 42.308 0.00 0.00 0.00 3.85
4200 5901 5.407407 TTGTAATGTTCTCCAGACTCCTC 57.593 43.478 0.00 0.00 0.00 3.71
4203 5904 6.253758 TGTAATGTTCTCCAGACTCCTCTTA 58.746 40.000 0.00 0.00 0.00 2.10
4204 5905 6.897966 TGTAATGTTCTCCAGACTCCTCTTAT 59.102 38.462 0.00 0.00 0.00 1.73
4205 5906 6.478512 AATGTTCTCCAGACTCCTCTTATC 57.521 41.667 0.00 0.00 0.00 1.75
4211 5912 3.024547 CCAGACTCCTCTTATCGGTTCA 58.975 50.000 0.00 0.00 0.00 3.18
4245 5946 7.584987 ACTGTAGAAAGCACACATTGATTAAC 58.415 34.615 0.00 0.00 30.58 2.01
4272 5973 4.511826 GCTTATCCATTTCAGGAGGTTACG 59.488 45.833 0.00 0.00 41.90 3.18
5025 6727 9.027129 CATGATTAGCATTTAATGTTTCACAGG 57.973 33.333 6.81 1.51 34.15 4.00
5082 6784 4.080356 TGCAGGGTAAGTATTCATGAAGCT 60.080 41.667 14.54 11.34 0.00 3.74
5124 6826 5.300034 CAGCATATCAAAGGCAGGAATTGTA 59.700 40.000 0.00 0.00 0.00 2.41
5130 6832 5.076182 TCAAAGGCAGGAATTGTAACATCA 58.924 37.500 0.00 0.00 0.00 3.07
5175 6877 4.662961 GCAGCAAACCCGGTTGGC 62.663 66.667 20.66 20.66 42.30 4.52
5226 6928 6.166982 GCTAGTTATACTGGCCTTCCTATTG 58.833 44.000 3.32 0.00 45.53 1.90
5258 6960 7.194607 TCTTGATTCTCAACATGTTGACTTC 57.805 36.000 32.36 26.32 43.90 3.01
5287 6989 5.709011 ATGATTCTTCGAAGACATTCACG 57.291 39.130 27.03 0.00 34.32 4.35
5646 7350 6.321181 TCAAAGTTGCACCTCTAACAAAATCT 59.679 34.615 0.00 0.00 0.00 2.40
5925 7630 3.117169 TCCCCATTGCAGTAAGGCATATT 60.117 43.478 0.00 0.00 44.48 1.28
5997 7702 5.659463 AGCTATGTGTCTCAAGAAGATGTC 58.341 41.667 0.00 0.00 36.11 3.06
6027 7732 0.880278 TTCGTGTGCTGCTTGACTCC 60.880 55.000 0.00 0.00 0.00 3.85
6148 7864 7.707893 GCCTAAAGTATATGTTGGTTCGAACTA 59.292 37.037 26.32 19.22 0.00 2.24
6154 7870 8.092687 AGTATATGTTGGTTCGAACTAAAGTGT 58.907 33.333 25.97 17.71 31.01 3.55
6157 7873 2.215196 TGGTTCGAACTAAAGTGTGCC 58.785 47.619 26.32 7.64 0.00 5.01
6161 7877 0.511221 CGAACTAAAGTGTGCCACCG 59.489 55.000 0.00 0.00 34.49 4.94
6173 7889 0.955428 TGCCACCGAATGCAGTTCTC 60.955 55.000 0.00 0.00 34.56 2.87
6181 7897 2.280183 CGAATGCAGTTCTCTTAGCGAC 59.720 50.000 0.00 0.00 34.56 5.19
6184 7900 4.720649 ATGCAGTTCTCTTAGCGACTAA 57.279 40.909 0.00 0.00 0.00 2.24
6186 7902 3.119459 TGCAGTTCTCTTAGCGACTAAGG 60.119 47.826 19.61 13.40 42.43 2.69
6196 7912 5.880332 TCTTAGCGACTAAGGCATTCATTTT 59.120 36.000 19.61 0.00 42.43 1.82
6200 7916 5.126061 AGCGACTAAGGCATTCATTTTCATT 59.874 36.000 0.00 0.00 0.00 2.57
6206 7922 5.873179 AGGCATTCATTTTCATTGCTTTG 57.127 34.783 0.00 0.00 33.86 2.77
6208 7924 4.696402 GGCATTCATTTTCATTGCTTTGGA 59.304 37.500 0.00 0.00 33.86 3.53
6271 7987 3.262420 TCTCGCATCTCTTTTTGCCTAC 58.738 45.455 0.00 0.00 35.41 3.18
6275 7991 3.505836 GCATCTCTTTTTGCCTACTTGC 58.494 45.455 0.00 0.00 32.66 4.01
6280 7997 4.275936 TCTCTTTTTGCCTACTTGCAGTTC 59.724 41.667 0.00 0.00 43.21 3.01
6436 8155 2.733671 CGCACGCCTGACTCATGTG 61.734 63.158 0.00 0.00 0.00 3.21
6533 8252 3.120752 GCAATACTGCTGCATGTCTATCG 60.121 47.826 1.31 0.00 45.74 2.92
6534 8253 4.053983 CAATACTGCTGCATGTCTATCGT 58.946 43.478 1.31 0.00 0.00 3.73
6620 8343 1.807573 GCCGTTCTTCTCCAGCTCG 60.808 63.158 0.00 0.00 0.00 5.03
6638 8361 2.311294 GCACTTCAGCGACAACAGT 58.689 52.632 0.00 0.00 0.00 3.55
6656 8379 1.766496 AGTTTTGTCCTGGACGAAGGA 59.234 47.619 24.61 12.21 44.35 3.36
6709 8432 1.620819 ACAACTCAATCGACCTCAGCT 59.379 47.619 0.00 0.00 0.00 4.24
6718 8441 1.607801 CGACCTCAGCTGATGACCCA 61.608 60.000 23.72 0.00 33.22 4.51
6750 8473 4.689612 ACAGCTACCTCTTTGTTCAAGA 57.310 40.909 0.00 0.00 39.39 3.02
6761 8484 5.240891 TCTTTGTTCAAGAGCTAGTGATGG 58.759 41.667 0.00 0.00 36.51 3.51
6811 8546 1.142474 GGCAAAATGACTGCTTGTGC 58.858 50.000 0.00 0.00 39.82 4.57
6827 8562 4.695455 GCTTGTGCCTGTTTTATGAGAGTA 59.305 41.667 0.00 0.00 0.00 2.59
6853 8588 7.829211 ACTGATATTGGTGTACTGTTTGCTATT 59.171 33.333 0.00 0.00 0.00 1.73
6872 8607 0.555769 TTGAAACCCTTGTGCCTCCT 59.444 50.000 0.00 0.00 0.00 3.69
7008 8747 1.733402 TTGGAACGCCAGCAACCAAG 61.733 55.000 0.00 0.00 46.91 3.61
7066 8805 3.476552 GTTGTCTTCATGGAGGTGTGAA 58.523 45.455 0.00 0.00 33.63 3.18
7092 8831 3.553511 GGCTCAGAAACTGACATGATACG 59.446 47.826 0.00 0.00 35.39 3.06
7118 8857 3.375782 GCAGTGAAATAATGCCCATCC 57.624 47.619 0.00 0.00 44.23 3.51
7127 8866 1.463674 AATGCCCATCCGAAGTGAAC 58.536 50.000 0.00 0.00 0.00 3.18
7130 8869 1.087501 GCCCATCCGAAGTGAACTTC 58.912 55.000 12.30 12.30 46.63 3.01
7192 8985 2.428171 ACAAATTCCATGATGAAGCCCG 59.572 45.455 0.00 0.00 0.00 6.13
7193 8986 1.696063 AATTCCATGATGAAGCCCGG 58.304 50.000 0.00 0.00 0.00 5.73
7194 8987 0.825010 ATTCCATGATGAAGCCCGGC 60.825 55.000 0.00 0.00 0.00 6.13
7216 9032 1.296392 CTCCACCCAAGCATCGTCA 59.704 57.895 0.00 0.00 0.00 4.35
7249 9066 1.003355 CGCTTCCTCTTCAAGGCCA 60.003 57.895 5.01 0.00 45.78 5.36
7250 9067 1.023513 CGCTTCCTCTTCAAGGCCAG 61.024 60.000 5.01 0.00 45.78 4.85
7251 9068 1.311651 GCTTCCTCTTCAAGGCCAGC 61.312 60.000 5.01 0.00 45.78 4.85
7252 9069 1.003355 TTCCTCTTCAAGGCCAGCG 60.003 57.895 5.01 0.00 45.78 5.18
7253 9070 2.437359 CCTCTTCAAGGCCAGCGG 60.437 66.667 5.01 0.00 38.67 5.52
7254 9071 2.348998 CTCTTCAAGGCCAGCGGT 59.651 61.111 5.01 0.00 0.00 5.68
7255 9072 1.302832 CTCTTCAAGGCCAGCGGTT 60.303 57.895 5.01 0.00 0.00 4.44
7256 9073 1.301677 CTCTTCAAGGCCAGCGGTTC 61.302 60.000 5.01 0.00 0.00 3.62
7257 9074 1.600636 CTTCAAGGCCAGCGGTTCA 60.601 57.895 5.01 0.00 0.00 3.18
7260 9077 0.960364 TCAAGGCCAGCGGTTCAATC 60.960 55.000 5.01 0.00 0.00 2.67
7261 9078 0.962356 CAAGGCCAGCGGTTCAATCT 60.962 55.000 5.01 0.00 0.00 2.40
7262 9079 0.678048 AAGGCCAGCGGTTCAATCTC 60.678 55.000 5.01 0.00 0.00 2.75
7266 9097 1.677217 GCCAGCGGTTCAATCTCTCTT 60.677 52.381 0.00 0.00 0.00 2.85
7292 9123 1.134098 CATTAACCCATGGCGAGTCCT 60.134 52.381 6.09 0.00 35.26 3.85
7298 9129 1.270518 CCCATGGCGAGTCCTAGAATG 60.271 57.143 6.09 0.00 35.26 2.67
7299 9130 1.506493 CATGGCGAGTCCTAGAATGC 58.494 55.000 0.00 0.00 35.26 3.56
7304 9135 2.622436 GCGAGTCCTAGAATGCTGTTT 58.378 47.619 0.00 0.00 0.00 2.83
7330 9161 3.822735 CTCCATTGCCCACGATGATATTT 59.177 43.478 0.00 0.00 39.73 1.40
7350 9181 3.685139 TGTGGAGGCTTAGAAGACTTG 57.315 47.619 0.00 0.00 46.71 3.16
7355 11829 3.262151 GGAGGCTTAGAAGACTTGAGGTT 59.738 47.826 0.00 0.00 46.71 3.50
7414 11888 4.430388 TGGGGTCCTTCCACTTGT 57.570 55.556 0.00 0.00 41.02 3.16
7429 11907 0.035439 CTTGTATGGCCACCGGAGTT 60.035 55.000 8.16 0.00 0.00 3.01
7430 11908 0.035820 TTGTATGGCCACCGGAGTTC 60.036 55.000 8.16 0.00 0.00 3.01
7438 11916 2.048127 ACCGGAGTTCAAGAGCGC 60.048 61.111 9.46 0.00 0.00 5.92
7439 11917 2.048222 CCGGAGTTCAAGAGCGCA 60.048 61.111 11.47 0.00 0.00 6.09
7453 11931 4.510038 AGAGCGCAAGAAAATTTGTCAT 57.490 36.364 11.47 0.00 43.02 3.06
7461 11939 6.593072 GCAAGAAAATTTGTCATGGTTTAGC 58.407 36.000 0.00 0.00 0.00 3.09
7497 11975 2.042104 ACTTAGTCGGTCGACAAACG 57.958 50.000 22.81 12.07 46.76 3.60
7498 11976 1.334054 CTTAGTCGGTCGACAAACGG 58.666 55.000 22.81 6.81 46.76 4.44
7538 12016 1.153449 CCGTCCATAAGAAGGCGCA 60.153 57.895 10.83 0.00 37.32 6.09
7539 12017 1.429148 CCGTCCATAAGAAGGCGCAC 61.429 60.000 10.83 0.00 37.32 5.34
7546 12024 3.201290 CATAAGAAGGCGCACTCAATCT 58.799 45.455 10.83 1.27 0.00 2.40
7583 12061 1.866015 TGTGGGAGGTATGGTGAGAG 58.134 55.000 0.00 0.00 0.00 3.20
7615 12093 4.306245 ACCGTTTGGGAGGTGAGA 57.694 55.556 0.00 0.00 39.66 3.27
7616 12094 2.058675 ACCGTTTGGGAGGTGAGAG 58.941 57.895 0.00 0.00 39.66 3.20
7617 12095 1.376037 CCGTTTGGGAGGTGAGAGC 60.376 63.158 0.00 0.00 38.47 4.09
7618 12096 1.371183 CGTTTGGGAGGTGAGAGCA 59.629 57.895 0.00 0.00 0.00 4.26
7619 12097 0.036010 CGTTTGGGAGGTGAGAGCAT 60.036 55.000 0.00 0.00 0.00 3.79
7620 12098 1.743996 GTTTGGGAGGTGAGAGCATC 58.256 55.000 0.00 0.00 0.00 3.91
7631 12109 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
7632 12110 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
7633 12111 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
7634 12112 2.579201 CATCTCCAGCCGTTCGGT 59.421 61.111 12.81 0.00 0.00 4.69
7635 12113 1.519455 CATCTCCAGCCGTTCGGTC 60.519 63.158 12.81 5.49 0.00 4.79
7636 12114 2.722201 ATCTCCAGCCGTTCGGTCC 61.722 63.158 12.81 0.00 0.00 4.46
7637 12115 4.452733 CTCCAGCCGTTCGGTCCC 62.453 72.222 12.81 0.00 0.00 4.46
7639 12117 4.760047 CCAGCCGTTCGGTCCCAG 62.760 72.222 12.81 0.00 0.00 4.45
7640 12118 4.760047 CAGCCGTTCGGTCCCAGG 62.760 72.222 12.81 0.00 0.00 4.45
7642 12120 3.782443 GCCGTTCGGTCCCAGGAT 61.782 66.667 12.81 0.00 0.00 3.24
7643 12121 2.186903 CCGTTCGGTCCCAGGATG 59.813 66.667 2.82 0.00 0.00 3.51
7644 12122 2.511600 CGTTCGGTCCCAGGATGC 60.512 66.667 0.00 0.00 31.97 3.91
7645 12123 2.124695 GTTCGGTCCCAGGATGCC 60.125 66.667 0.00 0.00 31.97 4.40
7646 12124 3.781307 TTCGGTCCCAGGATGCCG 61.781 66.667 8.98 8.98 44.95 5.69
7648 12126 3.781307 CGGTCCCAGGATGCCGAA 61.781 66.667 9.55 0.00 46.33 4.30
7649 12127 2.674754 GGTCCCAGGATGCCGAAA 59.325 61.111 0.00 0.00 31.97 3.46
7650 12128 1.001393 GGTCCCAGGATGCCGAAAA 60.001 57.895 0.00 0.00 31.97 2.29
7651 12129 0.610785 GGTCCCAGGATGCCGAAAAA 60.611 55.000 0.00 0.00 31.97 1.94
7652 12130 0.811281 GTCCCAGGATGCCGAAAAAG 59.189 55.000 0.00 0.00 31.97 2.27
7653 12131 0.323360 TCCCAGGATGCCGAAAAAGG 60.323 55.000 0.00 0.00 31.97 3.11
7654 12132 1.322538 CCCAGGATGCCGAAAAAGGG 61.323 60.000 0.00 0.00 31.97 3.95
7660 12138 2.671963 GCCGAAAAAGGGCCGTCT 60.672 61.111 0.00 0.00 44.97 4.18
7661 12139 2.978018 GCCGAAAAAGGGCCGTCTG 61.978 63.158 0.00 0.00 44.97 3.51
7662 12140 2.332654 CCGAAAAAGGGCCGTCTGG 61.333 63.158 0.00 0.00 38.77 3.86
7663 12141 2.332654 CGAAAAAGGGCCGTCTGGG 61.333 63.158 0.00 0.00 39.58 4.45
7664 12142 1.977009 GAAAAAGGGCCGTCTGGGG 60.977 63.158 0.00 0.00 35.78 4.96
7672 12150 4.760047 CCGTCTGGGGCTGAACCG 62.760 72.222 0.00 0.00 40.62 4.44
7673 12151 4.760047 CGTCTGGGGCTGAACCGG 62.760 72.222 0.00 0.00 40.62 5.28
7679 12157 4.770874 GGGCTGAACCGGCGCTTA 62.771 66.667 7.64 0.00 43.83 3.09
7680 12158 3.497031 GGCTGAACCGGCGCTTAC 61.497 66.667 7.64 0.00 36.46 2.34
7681 12159 2.434359 GCTGAACCGGCGCTTACT 60.434 61.111 7.64 0.00 0.00 2.24
7682 12160 2.033194 GCTGAACCGGCGCTTACTT 61.033 57.895 7.64 0.00 0.00 2.24
7683 12161 1.574702 GCTGAACCGGCGCTTACTTT 61.575 55.000 7.64 0.00 0.00 2.66
7684 12162 0.872388 CTGAACCGGCGCTTACTTTT 59.128 50.000 7.64 0.00 0.00 2.27
7685 12163 0.589223 TGAACCGGCGCTTACTTTTG 59.411 50.000 7.64 0.00 0.00 2.44
7686 12164 0.869730 GAACCGGCGCTTACTTTTGA 59.130 50.000 7.64 0.00 0.00 2.69
7687 12165 0.589708 AACCGGCGCTTACTTTTGAC 59.410 50.000 7.64 0.00 0.00 3.18
7688 12166 1.131826 CCGGCGCTTACTTTTGACG 59.868 57.895 7.64 0.00 0.00 4.35
7689 12167 1.562575 CCGGCGCTTACTTTTGACGT 61.563 55.000 7.64 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 35 1.342819 TGCTTCCAAATTTGTTCGGGG 59.657 47.619 16.73 0.64 0.00 5.73
62 100 7.757624 GCTGAAAATGTACCGGATTTCATAAAA 59.242 33.333 9.46 0.00 40.03 1.52
63 101 7.094162 TGCTGAAAATGTACCGGATTTCATAAA 60.094 33.333 9.46 3.38 40.03 1.40
64 102 6.375736 TGCTGAAAATGTACCGGATTTCATAA 59.624 34.615 9.46 5.53 40.03 1.90
65 103 5.883115 TGCTGAAAATGTACCGGATTTCATA 59.117 36.000 9.46 6.48 40.03 2.15
66 104 4.704540 TGCTGAAAATGTACCGGATTTCAT 59.295 37.500 9.46 3.96 40.03 2.57
68 106 4.695217 TGCTGAAAATGTACCGGATTTC 57.305 40.909 9.46 10.97 33.48 2.17
111 149 8.955061 ATTCAAAAATTGTTCTCGATACACAG 57.045 30.769 0.43 0.00 0.00 3.66
118 157 9.579768 TTCTCAAAATTCAAAAATTGTTCTCGA 57.420 25.926 0.00 0.00 35.27 4.04
139 178 8.596271 TGTTCAGTTTCGTAAATATGTTCTCA 57.404 30.769 0.00 0.00 0.00 3.27
243 283 6.800543 TCACATTTTCGAAAAATGTTCCTGA 58.199 32.000 25.77 17.97 45.52 3.86
246 286 6.344032 CGTTCACATTTTCGAAAAATGTTCC 58.656 36.000 25.77 16.37 45.52 3.62
250 290 5.559694 AGCGTTCACATTTTCGAAAAATG 57.440 34.783 25.77 24.04 41.91 2.32
262 1447 8.437360 TCATATTTCTGAAATAGCGTTCACAT 57.563 30.769 22.86 6.29 36.83 3.21
404 1609 9.396022 TCACAGTCTTATTCTGTTCTTTCTTTT 57.604 29.630 0.00 0.00 43.14 2.27
405 1610 8.964476 TCACAGTCTTATTCTGTTCTTTCTTT 57.036 30.769 0.00 0.00 43.14 2.52
407 1612 8.424918 TCTTCACAGTCTTATTCTGTTCTTTCT 58.575 33.333 0.00 0.00 43.14 2.52
408 1613 8.594881 TCTTCACAGTCTTATTCTGTTCTTTC 57.405 34.615 0.00 0.00 43.14 2.62
412 1617 9.439537 GTTTTTCTTCACAGTCTTATTCTGTTC 57.560 33.333 0.00 0.00 43.14 3.18
415 1620 7.930217 TGGTTTTTCTTCACAGTCTTATTCTG 58.070 34.615 0.00 0.00 38.68 3.02
417 1622 7.931275 ACTGGTTTTTCTTCACAGTCTTATTC 58.069 34.615 0.00 0.00 37.86 1.75
418 1623 7.881775 ACTGGTTTTTCTTCACAGTCTTATT 57.118 32.000 0.00 0.00 37.86 1.40
420 1625 7.788026 TCTACTGGTTTTTCTTCACAGTCTTA 58.212 34.615 0.00 0.00 41.99 2.10
421 1626 6.650120 TCTACTGGTTTTTCTTCACAGTCTT 58.350 36.000 0.00 0.00 41.99 3.01
425 1630 7.553881 TCTTTCTACTGGTTTTTCTTCACAG 57.446 36.000 0.00 0.00 35.40 3.66
427 1632 7.758495 TGTTCTTTCTACTGGTTTTTCTTCAC 58.242 34.615 0.00 0.00 0.00 3.18
428 1633 7.931578 TGTTCTTTCTACTGGTTTTTCTTCA 57.068 32.000 0.00 0.00 0.00 3.02
431 1636 8.803235 ACTTTTGTTCTTTCTACTGGTTTTTCT 58.197 29.630 0.00 0.00 0.00 2.52
432 1637 8.981724 ACTTTTGTTCTTTCTACTGGTTTTTC 57.018 30.769 0.00 0.00 0.00 2.29
433 1638 9.772973 AAACTTTTGTTCTTTCTACTGGTTTTT 57.227 25.926 0.00 0.00 42.67 1.94
459 1664 4.508662 ACAAGTTTGCGGAAATTCCAAAA 58.491 34.783 13.04 9.03 35.91 2.44
460 1665 4.130286 ACAAGTTTGCGGAAATTCCAAA 57.870 36.364 13.04 3.22 35.91 3.28
461 1666 3.810310 ACAAGTTTGCGGAAATTCCAA 57.190 38.095 13.04 0.00 35.91 3.53
462 1667 3.810310 AACAAGTTTGCGGAAATTCCA 57.190 38.095 13.04 0.00 35.91 3.53
467 1672 7.041984 ACAAAACTTAAAACAAGTTTGCGGAAA 60.042 29.630 14.04 0.00 46.33 3.13
468 1673 6.424207 ACAAAACTTAAAACAAGTTTGCGGAA 59.576 30.769 14.04 0.00 46.33 4.30
469 1674 5.927115 ACAAAACTTAAAACAAGTTTGCGGA 59.073 32.000 14.04 0.00 46.33 5.54
470 1675 6.159419 ACAAAACTTAAAACAAGTTTGCGG 57.841 33.333 14.04 10.17 46.33 5.69
471 1676 5.943573 CGACAAAACTTAAAACAAGTTTGCG 59.056 36.000 14.04 13.62 46.33 4.85
473 1678 7.265286 GCAACGACAAAACTTAAAACAAGTTTG 59.735 33.333 14.04 11.07 46.33 2.93
475 1680 6.643360 AGCAACGACAAAACTTAAAACAAGTT 59.357 30.769 0.00 0.00 41.82 2.66
476 1681 6.153756 AGCAACGACAAAACTTAAAACAAGT 58.846 32.000 0.00 0.00 0.00 3.16
477 1682 6.626199 AGCAACGACAAAACTTAAAACAAG 57.374 33.333 0.00 0.00 0.00 3.16
481 1686 6.424207 ACCAAAAGCAACGACAAAACTTAAAA 59.576 30.769 0.00 0.00 0.00 1.52
482 1687 5.927115 ACCAAAAGCAACGACAAAACTTAAA 59.073 32.000 0.00 0.00 0.00 1.52
486 1691 3.586100 ACCAAAAGCAACGACAAAACT 57.414 38.095 0.00 0.00 0.00 2.66
487 1692 4.387559 AGAAACCAAAAGCAACGACAAAAC 59.612 37.500 0.00 0.00 0.00 2.43
488 1693 4.387256 CAGAAACCAAAAGCAACGACAAAA 59.613 37.500 0.00 0.00 0.00 2.44
490 1695 3.057174 ACAGAAACCAAAAGCAACGACAA 60.057 39.130 0.00 0.00 0.00 3.18
491 1696 2.490115 ACAGAAACCAAAAGCAACGACA 59.510 40.909 0.00 0.00 0.00 4.35
492 1697 3.145212 ACAGAAACCAAAAGCAACGAC 57.855 42.857 0.00 0.00 0.00 4.34
493 1698 4.396790 ACTTACAGAAACCAAAAGCAACGA 59.603 37.500 0.00 0.00 0.00 3.85
494 1699 4.668289 ACTTACAGAAACCAAAAGCAACG 58.332 39.130 0.00 0.00 0.00 4.10
496 1701 5.802956 CGAAACTTACAGAAACCAAAAGCAA 59.197 36.000 0.00 0.00 0.00 3.91
498 1703 4.206404 GCGAAACTTACAGAAACCAAAAGC 59.794 41.667 0.00 0.00 0.00 3.51
499 1704 5.336744 TGCGAAACTTACAGAAACCAAAAG 58.663 37.500 0.00 0.00 0.00 2.27
502 1707 4.023536 GGATGCGAAACTTACAGAAACCAA 60.024 41.667 0.00 0.00 0.00 3.67
503 1708 3.500680 GGATGCGAAACTTACAGAAACCA 59.499 43.478 0.00 0.00 0.00 3.67
504 1709 3.424433 CGGATGCGAAACTTACAGAAACC 60.424 47.826 0.00 0.00 0.00 3.27
505 1710 3.732943 CGGATGCGAAACTTACAGAAAC 58.267 45.455 0.00 0.00 0.00 2.78
508 1713 1.355971 GCGGATGCGAAACTTACAGA 58.644 50.000 12.10 0.00 0.00 3.41
509 1714 3.877801 GCGGATGCGAAACTTACAG 57.122 52.632 12.10 0.00 0.00 2.74
520 1725 2.103042 GTGACTGACCTGCGGATGC 61.103 63.158 0.00 0.00 43.20 3.91
521 1726 1.807165 CGTGACTGACCTGCGGATG 60.807 63.158 0.00 0.00 0.00 3.51
522 1727 2.573869 CGTGACTGACCTGCGGAT 59.426 61.111 0.00 0.00 0.00 4.18
524 1729 3.991051 ACCGTGACTGACCTGCGG 61.991 66.667 0.00 0.00 46.83 5.69
526 1731 2.357517 CCACCGTGACTGACCTGC 60.358 66.667 0.00 0.00 0.00 4.85
527 1732 1.532604 TAGCCACCGTGACTGACCTG 61.533 60.000 0.00 0.00 0.00 4.00
528 1733 0.614979 ATAGCCACCGTGACTGACCT 60.615 55.000 0.00 0.00 0.00 3.85
529 1734 0.179108 GATAGCCACCGTGACTGACC 60.179 60.000 0.00 0.00 0.00 4.02
530 1735 0.525668 CGATAGCCACCGTGACTGAC 60.526 60.000 0.00 0.00 0.00 3.51
531 1736 1.663379 CCGATAGCCACCGTGACTGA 61.663 60.000 0.00 0.00 0.00 3.41
532 1737 1.226974 CCGATAGCCACCGTGACTG 60.227 63.158 0.00 0.00 0.00 3.51
533 1738 1.255667 AACCGATAGCCACCGTGACT 61.256 55.000 0.00 0.00 0.00 3.41
534 1739 0.804933 GAACCGATAGCCACCGTGAC 60.805 60.000 0.00 0.00 0.00 3.67
535 1740 1.514087 GAACCGATAGCCACCGTGA 59.486 57.895 0.00 0.00 0.00 4.35
536 1741 1.876714 CGAACCGATAGCCACCGTG 60.877 63.158 0.00 0.00 0.00 4.94
537 1742 1.389609 ATCGAACCGATAGCCACCGT 61.390 55.000 0.00 0.00 45.13 4.83
538 1743 0.663568 GATCGAACCGATAGCCACCG 60.664 60.000 1.57 0.00 47.00 4.94
539 1744 0.319641 GGATCGAACCGATAGCCACC 60.320 60.000 0.00 0.00 47.00 4.61
540 1745 0.319641 GGGATCGAACCGATAGCCAC 60.320 60.000 5.55 0.00 47.00 5.01
541 1746 0.469331 AGGGATCGAACCGATAGCCA 60.469 55.000 5.55 0.00 47.00 4.75
542 1747 0.680061 AAGGGATCGAACCGATAGCC 59.320 55.000 5.55 0.78 47.00 3.93
543 1748 1.784525 CAAGGGATCGAACCGATAGC 58.215 55.000 5.55 0.00 47.00 2.97
544 1749 1.784525 GCAAGGGATCGAACCGATAG 58.215 55.000 5.55 0.00 47.00 2.08
547 1752 2.183300 CGCAAGGGATCGAACCGA 59.817 61.111 5.55 0.00 41.13 4.69
692 1957 1.528309 GTGTGACCCACCCAACAGG 60.528 63.158 0.00 0.00 38.18 4.00
693 1958 4.157607 GTGTGACCCACCCAACAG 57.842 61.111 0.00 0.00 38.18 3.16
700 1965 0.400594 AAGCCTAAGGTGTGACCCAC 59.599 55.000 0.00 0.00 39.75 4.61
779 2044 4.404654 GCCGAAAGCCTTGTGCCG 62.405 66.667 0.00 0.00 42.71 5.69
989 2264 2.364579 TTACCATCCGCGGGGTCT 60.365 61.111 26.68 8.83 38.60 3.85
1014 2289 2.122189 GGGGAGGATGGGGGAGAG 60.122 72.222 0.00 0.00 0.00 3.20
1359 2950 0.173708 AATCTCCAGCTCGGACGTTC 59.826 55.000 0.00 0.00 39.64 3.95
1392 2983 4.007659 ACCTAAACGCTGTCCCAAATAAG 58.992 43.478 0.00 0.00 0.00 1.73
1484 3075 3.643763 CAATCCCTAGATTCTCGAACCG 58.356 50.000 0.00 0.00 40.89 4.44
1671 3267 4.396166 AGAAATTACCAAGCAGAACCATCG 59.604 41.667 0.00 0.00 0.00 3.84
1676 3272 4.280929 ACCCAAGAAATTACCAAGCAGAAC 59.719 41.667 0.00 0.00 0.00 3.01
1679 3275 4.871933 AACCCAAGAAATTACCAAGCAG 57.128 40.909 0.00 0.00 0.00 4.24
1684 3280 9.762381 ACTGAAATATAACCCAAGAAATTACCA 57.238 29.630 0.00 0.00 0.00 3.25
1799 3396 2.354103 GCATCTGGACAGCAGACAAGTA 60.354 50.000 0.00 0.00 0.00 2.24
1801 3398 1.085091 GCATCTGGACAGCAGACAAG 58.915 55.000 0.00 0.00 0.00 3.16
1821 3418 4.384846 GTGTACGTGACTGAACAATACCAG 59.615 45.833 0.00 0.00 36.53 4.00
1823 3420 4.300803 TGTGTACGTGACTGAACAATACC 58.699 43.478 0.00 0.00 0.00 2.73
1858 3459 5.068987 AGCAAAACTGCAGGACAATAGAAAA 59.931 36.000 19.93 0.00 37.25 2.29
1945 3546 7.992180 AATAGCAAACTGTATAGCAAAATGC 57.008 32.000 0.00 0.00 45.46 3.56
2062 3666 4.021544 AGAGGACTAGCAAGAACTTCACAG 60.022 45.833 0.00 0.00 0.00 3.66
2089 3693 1.069049 CACTGCAAAGGGTGGAAAAGG 59.931 52.381 0.00 0.00 0.00 3.11
2090 3694 2.031120 TCACTGCAAAGGGTGGAAAAG 58.969 47.619 4.21 0.00 34.57 2.27
2100 3726 5.327091 CATTCTTCGGTAATCACTGCAAAG 58.673 41.667 0.00 0.00 0.00 2.77
2304 3930 8.783093 CCATAGAAAATAAGAACTGTGTGTGAA 58.217 33.333 0.00 0.00 0.00 3.18
2357 3984 6.711277 ACAGACAGAATATAAGTGCAAAGGA 58.289 36.000 0.00 0.00 0.00 3.36
2378 4005 3.973657 ACTCAAGCAGCAATTCAAACAG 58.026 40.909 0.00 0.00 0.00 3.16
2438 4065 8.601845 TCGATCAAACTTGAAAGAACATTCTA 57.398 30.769 0.00 0.00 41.13 2.10
2439 4066 7.496529 TCGATCAAACTTGAAAGAACATTCT 57.503 32.000 0.00 0.00 41.13 2.40
2446 4117 7.132213 GTGACATTTCGATCAAACTTGAAAGA 58.868 34.615 0.00 0.00 41.13 2.52
2447 4118 6.912051 TGTGACATTTCGATCAAACTTGAAAG 59.088 34.615 0.00 0.00 41.13 2.62
2461 4132 2.905075 TCCTAGGCATGTGACATTTCG 58.095 47.619 2.96 0.00 0.00 3.46
2475 4146 0.991920 TGGCCTCCAAAGTTCCTAGG 59.008 55.000 3.32 0.82 0.00 3.02
2488 4159 4.021981 GGGAAAGCATTATTGTATGGCCTC 60.022 45.833 3.32 0.00 0.00 4.70
2565 4236 7.148423 CGTCACATCTTTTGATAAATGGAGACA 60.148 37.037 0.00 0.00 40.80 3.41
2664 4358 6.879458 GTCATAACCATCCATACAAGGATACC 59.121 42.308 0.00 0.00 46.54 2.73
2672 4366 6.070251 ACTCACAAGTCATAACCATCCATACA 60.070 38.462 0.00 0.00 0.00 2.29
2673 4367 6.349300 ACTCACAAGTCATAACCATCCATAC 58.651 40.000 0.00 0.00 0.00 2.39
2785 4479 4.020307 TCCTCATCTGTATCTGCACAAACA 60.020 41.667 0.00 0.00 0.00 2.83
2787 4481 4.020307 TGTCCTCATCTGTATCTGCACAAA 60.020 41.667 0.00 0.00 0.00 2.83
2809 4503 2.672961 TAGGACGCCTGAAGTTCATG 57.327 50.000 5.91 4.82 34.61 3.07
3038 4732 8.922676 TCTAGAAAATACGAACAGAATCAACAC 58.077 33.333 0.00 0.00 0.00 3.32
3082 4776 1.963515 GGCCCTTCAAACATGAGTTGT 59.036 47.619 0.00 0.00 41.53 3.32
3125 4819 4.458989 TCATCCTGCAGAAAATACAACCAC 59.541 41.667 17.39 0.00 0.00 4.16
3774 5469 1.268899 ACACCTGACCTTCGAGTAACG 59.731 52.381 0.00 0.00 44.09 3.18
3870 5565 3.072038 ACCCAACCCTTACTTCAGTGTAC 59.928 47.826 0.00 0.00 0.00 2.90
3912 5607 6.575162 ATGTTGACAGTAAATGGACCTTTC 57.425 37.500 0.00 0.00 0.00 2.62
4011 5709 6.238759 GGAAAATAGTTCAGTCATGCATACCC 60.239 42.308 0.00 0.00 0.00 3.69
4158 5856 1.595993 TTTCCTCTCCTGGACGAGCG 61.596 60.000 14.17 9.66 35.58 5.03
4245 5946 2.547211 CTCCTGAAATGGATAAGCAGCG 59.453 50.000 0.00 0.00 35.30 5.18
4272 5973 7.039270 GGTCAAAATTGTTTGTGTATATCCCC 58.961 38.462 0.00 0.00 43.90 4.81
4757 6459 5.703130 AGAACAAGAGTTAGTGGAGAATTGC 59.297 40.000 0.00 0.00 38.30 3.56
5082 6784 4.842574 TGCTGATACTTTGTTGCTCCATA 58.157 39.130 0.00 0.00 0.00 2.74
5124 6826 2.417933 GCATCGAGCTTGAAGTGATGTT 59.582 45.455 7.99 0.00 38.87 2.71
5130 6832 1.270518 ACACTGCATCGAGCTTGAAGT 60.271 47.619 7.99 4.28 45.94 3.01
5169 6871 1.002502 AGCTTACCTTCCGCCAACC 60.003 57.895 0.00 0.00 0.00 3.77
5175 6877 3.306166 CACGTAATTCAGCTTACCTTCCG 59.694 47.826 0.00 0.00 0.00 4.30
5287 6989 5.098211 GGATCTGTTAGCTCAACATTTTGC 58.902 41.667 0.00 0.00 45.96 3.68
5311 7013 8.664798 CAGAGGACATCAAAACGTGAAATAATA 58.335 33.333 0.00 0.00 40.50 0.98
5622 7326 6.507023 AGATTTTGTTAGAGGTGCAACTTTG 58.493 36.000 5.31 0.00 36.74 2.77
5646 7350 3.074390 TGAGAAAGGATCTGGCAAAGGAA 59.926 43.478 0.00 0.00 38.96 3.36
5925 7630 6.259387 CCTCAGACATTCGAATGATTGATTCA 59.741 38.462 37.75 19.33 40.67 2.57
5997 7702 1.425031 CACACGAATGGCCATGTCG 59.575 57.895 31.23 31.23 40.56 4.35
6027 7732 5.244626 ACCAAATTTCTGGGTTGAGATGAAG 59.755 40.000 1.33 0.00 41.16 3.02
6154 7870 0.955428 GAGAACTGCATTCGGTGGCA 60.955 55.000 0.00 0.00 42.69 4.92
6157 7873 2.349886 GCTAAGAGAACTGCATTCGGTG 59.650 50.000 0.00 0.00 42.69 4.94
6161 7877 3.516615 AGTCGCTAAGAGAACTGCATTC 58.483 45.455 0.00 0.00 37.62 2.67
6173 7889 5.741388 AAATGAATGCCTTAGTCGCTAAG 57.259 39.130 15.47 15.47 42.00 2.18
6181 7897 7.413657 CCAAAGCAATGAAAATGAATGCCTTAG 60.414 37.037 0.00 0.00 37.73 2.18
6184 7900 4.698304 CCAAAGCAATGAAAATGAATGCCT 59.302 37.500 0.00 0.00 37.73 4.75
6186 7902 5.866335 TCCAAAGCAATGAAAATGAATGC 57.134 34.783 0.00 0.00 37.28 3.56
6196 7912 5.132502 TCAAGACTTCTTCCAAAGCAATGA 58.867 37.500 0.00 0.00 33.11 2.57
6200 7916 5.869579 AGTATCAAGACTTCTTCCAAAGCA 58.130 37.500 0.00 0.00 33.11 3.91
6237 7953 5.021033 AGATGCGAGATTTTGACTCTGAT 57.979 39.130 0.00 0.00 32.87 2.90
6253 7969 3.751621 CAAGTAGGCAAAAAGAGATGCG 58.248 45.455 0.00 0.00 43.47 4.73
6271 7987 6.555315 ACAGAAGTTTGTTAAGAACTGCAAG 58.445 36.000 10.71 6.53 37.41 4.01
6275 7991 7.693951 CAGACAACAGAAGTTTGTTAAGAACTG 59.306 37.037 5.24 0.00 39.17 3.16
6280 7997 5.879237 TGCAGACAACAGAAGTTTGTTAAG 58.121 37.500 3.99 0.00 39.17 1.85
6436 8155 3.263425 TCAGGTCATCCACTTTAACCTCC 59.737 47.826 0.00 0.00 38.27 4.30
6530 8249 1.252175 AGCACACTGACAGAGACGAT 58.748 50.000 10.08 0.00 0.00 3.73
6620 8343 0.657840 AACTGTTGTCGCTGAAGTGC 59.342 50.000 0.00 0.00 0.00 4.40
6656 8379 0.107456 GATGCCTGATGATCCCACGT 59.893 55.000 0.00 0.00 0.00 4.49
6709 8432 3.244840 TGTTCATCACACATGGGTCATCA 60.245 43.478 0.00 0.00 0.00 3.07
6718 8441 3.517100 AGAGGTAGCTGTTCATCACACAT 59.483 43.478 0.00 0.00 0.00 3.21
6751 8474 4.954875 ACATTTCTAGCTCCATCACTAGC 58.045 43.478 0.00 0.00 36.60 3.42
6752 8475 5.069648 TGGACATTTCTAGCTCCATCACTAG 59.930 44.000 0.00 0.00 37.76 2.57
6753 8476 4.962362 TGGACATTTCTAGCTCCATCACTA 59.038 41.667 0.00 0.00 0.00 2.74
6754 8477 3.776969 TGGACATTTCTAGCTCCATCACT 59.223 43.478 0.00 0.00 0.00 3.41
6755 8478 3.873952 GTGGACATTTCTAGCTCCATCAC 59.126 47.826 0.00 0.00 35.26 3.06
6756 8479 3.776969 AGTGGACATTTCTAGCTCCATCA 59.223 43.478 0.00 0.00 35.26 3.07
6757 8480 4.414337 AGTGGACATTTCTAGCTCCATC 57.586 45.455 0.00 0.00 35.26 3.51
6758 8481 4.018960 ACAAGTGGACATTTCTAGCTCCAT 60.019 41.667 0.00 0.00 35.26 3.41
6759 8482 3.327757 ACAAGTGGACATTTCTAGCTCCA 59.672 43.478 0.00 0.00 0.00 3.86
6760 8483 3.944087 ACAAGTGGACATTTCTAGCTCC 58.056 45.455 0.00 0.00 0.00 4.70
6761 8484 5.578727 CACTACAAGTGGACATTTCTAGCTC 59.421 44.000 0.00 0.00 42.35 4.09
6811 8546 9.265901 CCAATATCAGTACTCTCATAAAACAGG 57.734 37.037 0.00 0.00 0.00 4.00
6827 8562 5.560724 AGCAAACAGTACACCAATATCAGT 58.439 37.500 0.00 0.00 0.00 3.41
6853 8588 0.555769 AGGAGGCACAAGGGTTTCAA 59.444 50.000 0.00 0.00 0.00 2.69
6872 8607 4.558226 ACAGACATCTCTAAATGCCACA 57.442 40.909 0.00 0.00 0.00 4.17
7028 8767 1.134340 CAACCAATTGGATGCCATGGG 60.134 52.381 31.22 1.45 37.83 4.00
7066 8805 5.426689 TCATGTCAGTTTCTGAGCCTTAT 57.573 39.130 0.00 0.00 41.46 1.73
7092 8831 1.268743 GCATTATTTCACTGCCTCCGC 60.269 52.381 0.00 0.00 0.00 5.54
7127 8866 1.002087 ACACCCCTTTGCGAGTAGAAG 59.998 52.381 0.00 0.00 0.00 2.85
7130 8869 2.754946 TAACACCCCTTTGCGAGTAG 57.245 50.000 0.00 0.00 0.00 2.57
7133 8872 1.821216 ACATAACACCCCTTTGCGAG 58.179 50.000 0.00 0.00 0.00 5.03
7192 8985 0.034089 ATGCTTGGGTGGAGTAAGCC 60.034 55.000 0.00 0.00 44.60 4.35
7193 8986 1.383523 GATGCTTGGGTGGAGTAAGC 58.616 55.000 0.00 0.00 45.23 3.09
7194 8987 1.066143 ACGATGCTTGGGTGGAGTAAG 60.066 52.381 0.00 0.00 0.00 2.34
7197 9013 1.296715 GACGATGCTTGGGTGGAGT 59.703 57.895 0.00 0.00 0.00 3.85
7216 9032 1.474077 GAAGCGGTGAAGGCAATGAAT 59.526 47.619 0.00 0.00 0.00 2.57
7249 9066 1.277557 AGCAAGAGAGATTGAACCGCT 59.722 47.619 0.00 0.00 31.55 5.52
7250 9067 1.663135 GAGCAAGAGAGATTGAACCGC 59.337 52.381 0.00 0.00 31.55 5.68
7251 9068 2.275318 GGAGCAAGAGAGATTGAACCG 58.725 52.381 0.00 0.00 31.55 4.44
7252 9069 2.026822 TGGGAGCAAGAGAGATTGAACC 60.027 50.000 0.00 0.00 31.55 3.62
7253 9070 3.340814 TGGGAGCAAGAGAGATTGAAC 57.659 47.619 0.00 0.00 31.55 3.18
7254 9071 4.581309 AATGGGAGCAAGAGAGATTGAA 57.419 40.909 0.00 0.00 31.55 2.69
7255 9072 5.431765 GTTAATGGGAGCAAGAGAGATTGA 58.568 41.667 0.00 0.00 31.55 2.57
7256 9073 4.578105 GGTTAATGGGAGCAAGAGAGATTG 59.422 45.833 0.00 0.00 0.00 2.67
7257 9074 4.385754 GGGTTAATGGGAGCAAGAGAGATT 60.386 45.833 0.00 0.00 0.00 2.40
7260 9077 2.239654 TGGGTTAATGGGAGCAAGAGAG 59.760 50.000 0.00 0.00 0.00 3.20
7261 9078 2.274542 TGGGTTAATGGGAGCAAGAGA 58.725 47.619 0.00 0.00 0.00 3.10
7262 9079 2.806945 TGGGTTAATGGGAGCAAGAG 57.193 50.000 0.00 0.00 0.00 2.85
7266 9097 0.396974 GCCATGGGTTAATGGGAGCA 60.397 55.000 15.13 0.00 46.24 4.26
7292 9123 3.138884 TGGAGCACAAACAGCATTCTA 57.861 42.857 0.00 0.00 0.00 2.10
7298 9129 0.668401 GGCAATGGAGCACAAACAGC 60.668 55.000 0.00 0.00 35.83 4.40
7299 9130 0.037975 GGGCAATGGAGCACAAACAG 60.038 55.000 0.00 0.00 38.00 3.16
7330 9161 3.239449 TCAAGTCTTCTAAGCCTCCACA 58.761 45.455 0.00 0.00 0.00 4.17
7348 9179 1.603456 TGCGATGAAGCAAACCTCAA 58.397 45.000 0.00 0.00 45.06 3.02
7400 11874 1.682087 GGCCATACAAGTGGAAGGACC 60.682 57.143 0.00 0.00 42.02 4.46
7412 11886 1.195442 TGAACTCCGGTGGCCATACA 61.195 55.000 9.72 0.00 0.00 2.29
7413 11887 0.035820 TTGAACTCCGGTGGCCATAC 60.036 55.000 9.72 4.17 0.00 2.39
7414 11888 0.251916 CTTGAACTCCGGTGGCCATA 59.748 55.000 9.72 0.00 0.00 2.74
7429 11907 4.202000 TGACAAATTTTCTTGCGCTCTTGA 60.202 37.500 9.73 0.00 0.00 3.02
7430 11908 4.043750 TGACAAATTTTCTTGCGCTCTTG 58.956 39.130 9.73 3.16 0.00 3.02
7438 11916 7.712264 TGCTAAACCATGACAAATTTTCTTG 57.288 32.000 0.00 0.00 0.00 3.02
7439 11917 9.423061 GTATGCTAAACCATGACAAATTTTCTT 57.577 29.630 0.00 0.00 0.00 2.52
7453 11931 1.638589 AGGGCTTGGTATGCTAAACCA 59.361 47.619 2.02 1.83 45.26 3.67
7461 11939 0.541863 AGTTCGGAGGGCTTGGTATG 59.458 55.000 0.00 0.00 0.00 2.39
7497 11975 2.341452 GACAAGGTGTCCAAAGGCC 58.659 57.895 0.00 0.00 41.37 5.19
7546 12024 3.205338 CACATCACTCACAACCTCAACA 58.795 45.455 0.00 0.00 0.00 3.33
7602 12080 1.556911 GAGATGCTCTCACCTCCCAAA 59.443 52.381 7.93 0.00 42.90 3.28
7615 12093 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
7616 12094 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
7617 12095 1.519455 GACCGAACGGCTGGAGATG 60.519 63.158 13.32 0.00 39.32 2.90
7618 12096 2.722201 GGACCGAACGGCTGGAGAT 61.722 63.158 13.32 0.00 39.32 2.75
7619 12097 3.379445 GGACCGAACGGCTGGAGA 61.379 66.667 13.32 0.00 39.32 3.71
7620 12098 4.452733 GGGACCGAACGGCTGGAG 62.453 72.222 13.32 0.00 39.32 3.86
7622 12100 4.760047 CTGGGACCGAACGGCTGG 62.760 72.222 13.32 0.00 39.32 4.85
7623 12101 4.760047 CCTGGGACCGAACGGCTG 62.760 72.222 13.32 0.00 39.32 4.85
7625 12103 3.782443 ATCCTGGGACCGAACGGC 61.782 66.667 13.32 6.19 39.32 5.68
7626 12104 2.186903 CATCCTGGGACCGAACGG 59.813 66.667 11.83 11.83 42.03 4.44
7627 12105 2.511600 GCATCCTGGGACCGAACG 60.512 66.667 0.00 0.00 0.00 3.95
7628 12106 2.124695 GGCATCCTGGGACCGAAC 60.125 66.667 0.00 0.00 0.00 3.95
7631 12109 2.813226 TTTTCGGCATCCTGGGACCG 62.813 60.000 14.26 14.26 46.97 4.79
7632 12110 0.610785 TTTTTCGGCATCCTGGGACC 60.611 55.000 0.00 0.00 0.00 4.46
7633 12111 0.811281 CTTTTTCGGCATCCTGGGAC 59.189 55.000 0.00 0.00 0.00 4.46
7634 12112 0.323360 CCTTTTTCGGCATCCTGGGA 60.323 55.000 0.00 0.00 0.00 4.37
7635 12113 1.322538 CCCTTTTTCGGCATCCTGGG 61.323 60.000 0.00 0.00 0.00 4.45
7636 12114 1.948721 GCCCTTTTTCGGCATCCTGG 61.949 60.000 0.00 0.00 46.27 4.45
7637 12115 1.512694 GCCCTTTTTCGGCATCCTG 59.487 57.895 0.00 0.00 46.27 3.86
7638 12116 4.018409 GCCCTTTTTCGGCATCCT 57.982 55.556 0.00 0.00 46.27 3.24
7643 12121 2.671963 AGACGGCCCTTTTTCGGC 60.672 61.111 0.00 0.00 46.29 5.54
7644 12122 2.332654 CCAGACGGCCCTTTTTCGG 61.333 63.158 0.00 0.00 0.00 4.30
7645 12123 2.332654 CCCAGACGGCCCTTTTTCG 61.333 63.158 0.00 0.00 0.00 3.46
7646 12124 1.977009 CCCCAGACGGCCCTTTTTC 60.977 63.158 0.00 0.00 0.00 2.29
7647 12125 2.117423 CCCCAGACGGCCCTTTTT 59.883 61.111 0.00 0.00 0.00 1.94
7648 12126 4.678743 GCCCCAGACGGCCCTTTT 62.679 66.667 0.00 0.00 43.66 2.27
7655 12133 4.760047 CGGTTCAGCCCCAGACGG 62.760 72.222 0.00 0.00 0.00 4.79
7656 12134 4.760047 CCGGTTCAGCCCCAGACG 62.760 72.222 0.00 0.00 0.00 4.18
7662 12140 4.770874 TAAGCGCCGGTTCAGCCC 62.771 66.667 4.18 0.00 0.00 5.19
7663 12141 3.497031 GTAAGCGCCGGTTCAGCC 61.497 66.667 4.18 0.00 0.00 4.85
7664 12142 1.574702 AAAGTAAGCGCCGGTTCAGC 61.575 55.000 4.18 4.12 0.00 4.26
7665 12143 0.872388 AAAAGTAAGCGCCGGTTCAG 59.128 50.000 4.18 0.00 0.00 3.02
7666 12144 0.589223 CAAAAGTAAGCGCCGGTTCA 59.411 50.000 4.18 0.00 0.00 3.18
7667 12145 0.869730 TCAAAAGTAAGCGCCGGTTC 59.130 50.000 4.18 0.00 0.00 3.62
7668 12146 0.589708 GTCAAAAGTAAGCGCCGGTT 59.410 50.000 6.80 6.80 0.00 4.44
7669 12147 1.562575 CGTCAAAAGTAAGCGCCGGT 61.563 55.000 2.29 0.00 0.00 5.28
7670 12148 1.131826 CGTCAAAAGTAAGCGCCGG 59.868 57.895 2.29 0.00 0.00 6.13
7671 12149 1.857364 ACGTCAAAAGTAAGCGCCG 59.143 52.632 2.29 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.